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Wang L, Lee E, Barlaz MA, de Los Reyes FL. Linking microbial population dynamics in anaerobic bioreactors to food waste type and decomposition stage. WASTE MANAGEMENT (NEW YORK, N.Y.) 2024; 186:77-85. [PMID: 38865907 DOI: 10.1016/j.wasman.2024.06.004] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/11/2024] [Revised: 05/18/2024] [Accepted: 06/06/2024] [Indexed: 06/14/2024]
Abstract
A key question in anaerobic microbial ecology is how microbial communities develop over different stages of waste decomposition and whether these changes are specific to waste types. We destructively sampled over time 26 replicate bioreactors cultivated on fruit/vegetable waste (FVW) and meat waste (MW) based on pre-defined waste components and composition. To characterize community shifts, we examined 16S rRNA genes from both the leachate and solid fractions of the waste. Waste decomposition occurred faster in FVW than MW, as accumulation of ammonia in MW reactors led to inhibition of methanogenesis. We identified population succession during different stages of waste decomposition and linked specific populations to different waste types. Community analyses revealed underrepresentation of methanogens in the leachate fractions, emphasizing the importance of consistent and representative sampling when characterizing microbial communities in solid waste.
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Affiliation(s)
- Ling Wang
- Department of Civil, Construction, and Environmental Engineering, North Carolina State University, Raleigh, NC 27695
| | - Eunyoung Lee
- Department of Civil, Construction, and Environmental Engineering, North Carolina State University, Raleigh, NC 27695
| | - Morton A Barlaz
- Department of Civil, Construction, and Environmental Engineering, North Carolina State University, Raleigh, NC 27695
| | - Francis L de Los Reyes
- Department of Civil, Construction, and Environmental Engineering, North Carolina State University, Raleigh, NC 27695.
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2
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Liu W, Sun C, Li W, Li T, Chen Z, Wang J, Ren Z, Wen X. Sludge composition and characteristics shaped microbial community and further determined process performance: A study on full-scale thermal hydrolysis-anaerobic digestion processes. J Environ Sci (China) 2024; 137:96-107. [PMID: 37980058 DOI: 10.1016/j.jes.2022.12.032] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/20/2022] [Revised: 12/22/2022] [Accepted: 12/25/2022] [Indexed: 11/20/2023]
Abstract
Anaerobic digestion (AD) with thermal hydrolysis (TH) pretreatment is a promising process for excess sludge treatment, while there lacks of the knowledge from full-scale process about the impact of sludge composition and characteristics on microbial community and performance. The sludge physiochemical indices, microbial community and performance data of four full-scale TH-AD plants were characterized, and their relationships was elucidated. The four plants were operated under almost similar total organic loading rate (OLR) but their methanogenesis performance differentiate into two groups, namely superior group (SupG) and the inferior group (InfG). In both groups, TH effectively solubilized particulate organic compounds, meanwhile raised the ammonia nitrogen (NH4+-N) and volatile fatty acid (VFA) concentration. Compared with the SupG, thermal hydrolyzed sludge of InfG had higher level of VFAs, NH4+-N and total chemical oxygen demand (tCOD), which showed higher inhibition effect on microbes, leading to a community with lower diversity, lower abundance of carbohydrate degrading functional guild, higher protein degrading one, and methanogens that adapted to limited substrates, and further declined the methane production rate. Thus, it was recommended that OLR alone was not sufficient for controlling the system in design and operation, the concentration of VFAs, NH4+-N and tCOD should be equally considered. Their higher concentration, together with the higher abundance of Defluviitoga and Proteiniphilum were recommended as indicators for inferior running condition. Our results proposed that microbial communities played a role of bridge between environmental factors and performance, provided implications for engineering ecology and operational regulation for full-scale sludge TH-AD process.
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Affiliation(s)
- Wei Liu
- School of Environment, Tsinghua University, Beijing 100084, China
| | - Chenxiang Sun
- School of Environment, Tsinghua University, Beijing 100084, China; Jinneng Holding Group, Datong, Shanxi 037000, China
| | - Wei Li
- Research and Development Center, Beijing Drainage Group Co. Ltd., Beijing 100124, China; Beijing Dabeinong Science and Technology Group Co., Ltd., Beijing 100080, China
| | - Tianle Li
- School of Environment, Tsinghua University, Beijing 100084, China
| | - Zhan Chen
- School of Environment, Tsinghua University, Beijing 100084, China
| | - Jiawei Wang
- Research and Development Center, Beijing Drainage Group Co. Ltd., Beijing 100124, China
| | - Zhengran Ren
- Research and Development Center, Beijing Drainage Group Co. Ltd., Beijing 100124, China
| | - Xianghua Wen
- School of Environment, Tsinghua University, Beijing 100084, China.
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3
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Bassani I, Bellini R, Vizzarro A, Coti C, Pozzovivo V, Barbieri D, Pirri CF, Verga F, Menin B. Biogeochemical characterization of four depleted gas reservoirs for conversion into underground hydrogen storage. Environ Microbiol 2023; 25:3683-3702. [PMID: 37964633 DOI: 10.1111/1462-2920.16538] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/19/2023] [Accepted: 10/31/2023] [Indexed: 11/16/2023]
Abstract
Depleted gas reservoirs are a valuable option for underground hydrogen storage (UHS). However, different classes of microorganisms, which are capable of using free H2 as a reducing agent for their metabolism, inhabit deep underground formations and can potentially affect the storage. This study integrates metagenomics based on Illumina-NGS sequencing of bacterial and archaeal 16S rRNA and dsrB and mcrA functional genes to unveil the composition and the variability of indigenous microbial populations of four Italian depleted reservoirs. The obtained mcrA sequences allow us to implement the existing taxonomic database for mcrA gene sequences with newly classified sequences obtained from the Italian gas reservoirs. Moreover, the KEGG and COG predictive functional annotation was used to highlight the metabolic pathways potentially associated with hydrogenotrophic metabolisms. The analyses revealed the specificity of each reservoir microbial community, and taxonomic and functional data highlighted the presence of an enriched number of taxa, whose activity depends on both reservoir hydrochemical composition and nutrient availability, of potential relevance in the context of UHS. This study is the very first to address the profiling of the microbial population and allowed us to perform a preliminary assessment of UHS feasibility in Italy.
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Affiliation(s)
- Ilaria Bassani
- Centre for Sustainable Future Technologies, Fondazione Istituto Italiano di Tecnologia, Turin, Italy
| | - Ruggero Bellini
- Centre for Sustainable Future Technologies, Fondazione Istituto Italiano di Tecnologia, Turin, Italy
| | - Arianna Vizzarro
- Centre for Sustainable Future Technologies, Fondazione Istituto Italiano di Tecnologia, Turin, Italy
| | | | | | | | - Candido Fabrizio Pirri
- Centre for Sustainable Future Technologies, Fondazione Istituto Italiano di Tecnologia, Turin, Italy
- Department of Applied Science and Technology, Politecnico di Torino, Turin, Italy
| | - Francesca Verga
- Department of Applied Science and Technology, Politecnico di Torino, Turin, Italy
| | - Barbara Menin
- Centre for Sustainable Future Technologies, Fondazione Istituto Italiano di Tecnologia, Turin, Italy
- National Research Council, Institute of Agricultural Biology and Biotechnology (CNR-IBBA), Milan, Italy
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4
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Clagnan E, Adani F. Influence of feedstock source on the development of polyhydroxyalkanoates-producing mixed microbial cultures in continuously stirred tank reactors. N Biotechnol 2023; 76:90-97. [PMID: 37220837 DOI: 10.1016/j.nbt.2023.05.005] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/21/2023] [Revised: 04/14/2023] [Accepted: 05/20/2023] [Indexed: 05/25/2023]
Abstract
Polyhydroxyalkanoates (PHAs) are the new frontier of bioplastic production; however, research is needed to develop and characterise efficient mixed microbial communities (MMCs) for their application with a multi-feedstock approach. Here, the performance and composition of six MMCs developed from the same inoculum on different feedstocks were investigated through Illumina sequencing to understand community development and identify possible redundancies in terms of genera and PHA metabolism. High PHA production efficiencies (>80% mg CODPHA mg-1 CODOA-consumed) were seen across all samples, but differences in the organic acids (OAs) composition led to different ratios of the monomers poly(3-hydroxybutyrate) (3HB) to poly(3-hydroxyvalerate) (3HV). Communities differed across all feedstocks, with enrichments in specific PHA-producing genera, but analysis of potential enzymatic activity identified a certain degree of functional redundancy, possibly leading to the general high efficiency seen in PHA production from all feedstocks. Leading PHAs producers across all feedstocks were identified in genera such as Thauera, Leadbetterella, Neomegalonema and Amaricoccus.
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Affiliation(s)
- Elisa Clagnan
- Gruppo Ricicla labs., Department of Agricultural and Environmental Sciences - Production, Territory, Agroenergy (DiSAA), University of Milan (Università degli studi di Milano), Via Celoria 2, 20133 Milano, Italy.
| | - Fabrizio Adani
- Gruppo Ricicla labs., Department of Agricultural and Environmental Sciences - Production, Territory, Agroenergy (DiSAA), University of Milan (Università degli studi di Milano), Via Celoria 2, 20133 Milano, Italy.
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5
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Holohan BC, Duarte MS, Szabo-Corbacho MA, Cavaleiro AJ, Salvador AF, Pereira MA, Ziels RM, Frijters CTMJ, Pacheco-Ruiz S, Carballa M, Sousa DZ, Stams AJM, O'Flaherty V, van Lier JB, Alves MM. Principles, Advances, and Perspectives of Anaerobic Digestion of Lipids. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2022; 56:4749-4775. [PMID: 35357187 DOI: 10.1021/acs.est.1c08722] [Citation(s) in RCA: 11] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/14/2023]
Abstract
Several problems associated with the presence of lipids in wastewater treatment plants are usually overcome by removing them ahead of the biological treatment. However, because of their high energy content, waste lipids are interesting yet challenging pollutants in anaerobic wastewater treatment and codigestion processes. The maximal amount of waste lipids that can be sustainably accommodated, and effectively converted to methane in anaerobic reactors, is limited by several problems including adsorption, sludge flotation, washout, and inhibition. These difficulties can be circumvented by appropriate feeding, mixing, and solids separation strategies, provided by suitable reactor technology and operation. In recent years, membrane bioreactors and flotation-based bioreactors have been developed to treat lipid-rich wastewater. In parallel, the increasing knowledge on the diversity of complex microbial communities in anaerobic sludge, and on interspecies microbial interactions, contributed to extend the knowledge and to understand more precisely the limits and constraints influencing the anaerobic biodegradation of lipids in anaerobic reactors. This critical review discusses the most important principles underpinning the degradation process and recent key discoveries and outlines the current knowledge coupling fundamental and applied aspects. A critical assessment of knowledge gaps in the field is also presented by integrating sectorial perspectives of academic researchers and of prominent developers of anaerobic technology.
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Affiliation(s)
- B Conall Holohan
- Microbial Ecology Laboratory, Microbiology, School of Natural Sciences and Ryan Institute, National University of Ireland, Galway H91 TK33, Ireland
- NVP Energy Ltd., IDA Technology and Business Park, Mervue, Galway H91 TK33, Ireland
| | - M Salomé Duarte
- CEB - Centre of Biological Engineering, University of Minho, Campus de Gualtar, 4710-057 Braga, Portugal
- LABBELS - Associate Laboratory, 4710-057 Braga, Guimarães, Portugal
| | - M Alejandra Szabo-Corbacho
- Department of Environmental Engineering and Water Technology, IHE Delft Institute for Water Education, Westvest 7, 2611 AX Delft, The Netherlands
| | - Ana J Cavaleiro
- CEB - Centre of Biological Engineering, University of Minho, Campus de Gualtar, 4710-057 Braga, Portugal
- LABBELS - Associate Laboratory, 4710-057 Braga, Guimarães, Portugal
| | - Andreia F Salvador
- CEB - Centre of Biological Engineering, University of Minho, Campus de Gualtar, 4710-057 Braga, Portugal
- LABBELS - Associate Laboratory, 4710-057 Braga, Guimarães, Portugal
| | - M Alcina Pereira
- CEB - Centre of Biological Engineering, University of Minho, Campus de Gualtar, 4710-057 Braga, Portugal
- LABBELS - Associate Laboratory, 4710-057 Braga, Guimarães, Portugal
| | - Ryan M Ziels
- Department of Civil Engineering, The University of British Columbia, 6250 Applied Science Lane, Vancouver, BC V6T 1Z 4, Canada
| | | | - Santiago Pacheco-Ruiz
- Biothane, Veolia Water Technologies, Tanthofdreef 21, 2623 EW Delft, The Netherlands
| | - Marta Carballa
- CRETUS, Department of Chemical Engineering, Universidad de Santiago de Compostela, 15705 Santiago de Compostela, Spain
| | - Diana Z Sousa
- Laboratory of Microbiology, Wageningen University and Research, 6708 WE, Wageningen, The Netherlands
| | - Alfons J M Stams
- Laboratory of Microbiology, Wageningen University and Research, 6708 WE, Wageningen, The Netherlands
| | - Vincent O'Flaherty
- Microbial Ecology Laboratory, Microbiology, School of Natural Sciences and Ryan Institute, National University of Ireland, Galway H91 TK33, Ireland
| | - Jules B van Lier
- Department of Environmental Engineering and Water Technology, IHE Delft Institute for Water Education, Westvest 7, 2611 AX Delft, The Netherlands
- Section Sanitary Engineering, CEG Faculty, Delft University of Technology, 2628 CN, Delft, The Netherlands
| | - M Madalena Alves
- CEB - Centre of Biological Engineering, University of Minho, Campus de Gualtar, 4710-057 Braga, Portugal
- LABBELS - Associate Laboratory, 4710-057 Braga, Guimarães, Portugal
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6
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Lagoa-Costa B, Kennes C, Veiga MC. Influence of feedstock mix ratio on microbial dynamics during acidogenic fermentation for polyhydroxyalkanoates production. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2022; 303:114132. [PMID: 34863075 DOI: 10.1016/j.jenvman.2021.114132] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/29/2021] [Revised: 10/26/2021] [Accepted: 11/16/2021] [Indexed: 06/13/2023]
Abstract
The nature of microbial populations plays an essential role in the production of volatile fatty acids (VFA) during acidogenesis, the first stage in polyhydroxyalkanoates (PHA) production using mixed cultures. However, the composition of microbial communities is generally affected by substrate alterations. This work aimed to unravel the microbial dynamics in response to a gradual change in the feedstock composition in an acidogenic reactor, with subsequent PHA production. To achieve this, co-digestion of cheese whey and brewery wastewater (BW) was carried out for the production of VFA, in which the ratio of these feedstocks was varied by gradually increasing the proportion of BW from 0 up to 50% of the organic content. Bacteria such as Megasphaera, Bifidobacterium or Caproiciproducens were the most abundant in the first stages of the co-digestion. However, when BW reached 25% of the organic load, new taxa emerged and displaced the former ones; like Selenomonas, Ethanoligenens or an undefined member of the Bacteroidales order. Accordingly, the production of butyric acid dropped from 52 down to 27%, while the production of acetic acid increased from 36 up to 52%. Furthermore, the gradual increase of the BW ratio led to a progressive drop in the degree of acidification, from 72 down to 57%. In a subsequent approach, the VFA-rich streams, obtained from the co-digestion, were used as substrates in PHA accumulation tests. All the tests yielded similar PHA contents, but with slightly different monomeric composition. The overall results confirmed that the microbiome was altered by a gradual change in the feedstock composition and, consequently, the VFA profile and the monomeric composition of the biopolymer also did.
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Affiliation(s)
- Borja Lagoa-Costa
- Chemical Engineering Laboratory, Faculty of Sciences and Centre for Advanced Scientific Research (CICA), University of A Coruña, Rúa da Fraga 10, 15008, A Coruña, Spain
| | - Christian Kennes
- Chemical Engineering Laboratory, Faculty of Sciences and Centre for Advanced Scientific Research (CICA), University of A Coruña, Rúa da Fraga 10, 15008, A Coruña, Spain
| | - María C Veiga
- Chemical Engineering Laboratory, Faculty of Sciences and Centre for Advanced Scientific Research (CICA), University of A Coruña, Rúa da Fraga 10, 15008, A Coruña, Spain.
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7
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Iglesias-Iglesias R, Portela-Grandío A, Treu L, Campanaro S, Kennes C, Veiga MC. Co-digestion of cheese whey with sewage sludge for caproic acid production: Role of microbiome and polyhydroxyalkanoates potential production. BIORESOURCE TECHNOLOGY 2021; 337:125388. [PMID: 34166928 DOI: 10.1016/j.biortech.2021.125388] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/31/2021] [Revised: 06/03/2021] [Accepted: 06/04/2021] [Indexed: 06/13/2023]
Abstract
The main aim of this work was to evaluate the efficiency of producing caproic acid and other volatile fatty acids using a co-digestion between cheese whey and sewage sludge in a continuous reactor. The effect of two different feeding regimes (one and two per day) and three hydraulic retention times (HRT) (15, 10 and 6 days) on the organic acids production were studied. The optimal conditions for the process were 10 days HRT, 2 feeding cycles per day, reaching a maximum degree of acidification of 44%. Under these conditions, the most abundant organic acid was caproic acid. The analysis of the microbial community dynamics in the reactor during the HRT changes revealed a microbiome enriched in organisms involved in caproic acid production. Additionally, the production of polyhydroxyalkanoates using the organic acids stream as feeding was verified in a fed-batch experiment obtaining a copolymer formed by hydroxybutyrate, hydroxyvalerate and hydroxyhexanoate.
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Affiliation(s)
- Ruth Iglesias-Iglesias
- Laboratory of Chemical Engineering, Faculty of Sciences and Centre for Advanced Scientific Research (CICA), University of A Coruña, A Coruña 15008, Spain
| | - Ana Portela-Grandío
- Laboratory of Chemical Engineering, Faculty of Sciences and Centre for Advanced Scientific Research (CICA), University of A Coruña, A Coruña 15008, Spain
| | - Laura Treu
- Department of Biology, University of Padova, Via U. Bassi 58/b, 35121 Padua, Italy
| | - Stefano Campanaro
- Department of Biology, University of Padova, Via U. Bassi 58/b, 35121 Padua, Italy; CRIBI Biotechnology Center, University of Padova, 35131 Padua, Italy
| | - Christian Kennes
- Laboratory of Chemical Engineering, Faculty of Sciences and Centre for Advanced Scientific Research (CICA), University of A Coruña, A Coruña 15008, Spain
| | - Maria C Veiga
- Laboratory of Chemical Engineering, Faculty of Sciences and Centre for Advanced Scientific Research (CICA), University of A Coruña, A Coruña 15008, Spain.
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8
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Wang H, Fotidis IA, Yan Q, Angelidaki I. Feeding strategies of continuous biomethanation processes during increasing organic loading with lipids or glucose for avoiding potential inhibition. BIORESOURCE TECHNOLOGY 2021; 327:124812. [PMID: 33578353 DOI: 10.1016/j.biortech.2021.124812] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/24/2020] [Revised: 01/28/2021] [Accepted: 01/29/2021] [Indexed: 06/12/2023]
Abstract
Anaerobic co-digestion is a promising solution for nutrients balance and improvement of methane production in anaerobic digestion (AD) processes. However, the knowledge about the effects of different co-substrates in manure-based AD, and different feeding strategies, on the process performance and the methanogenic microbiome pathway, are still missing. Therefore, under harsh and slow stepwise increase of organic loading rate (OLR), by addition of lipids and carbohydrates as co-substrates in continuous reactors, this study elucidated their effect on methane production and methanogenic microbiome. The results showed that, when OLR increased by adding lipids, a severe inhibition due to accumulated long-chain fatty acids (LCFA) was observed, while no significant inhibition was obtained by addition of glucose. Additionally, the LCFA inhibition in the reactor fed with lipid was alleviated by slow stepwise feeding strategy that enriched aceticlastic Methanosarcina thermophile and Methanosaeta concilii, and hydrogenotrophic Methanobacterium methanogens.
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Affiliation(s)
- Han Wang
- School of Environmental and Civil Engineering, Jiangnan University, Wuxi 214122, China; Department of Environmental Engineering, Technical University of Denmark, Kgs. Lyngby, Denmark
| | - Ioannis A Fotidis
- Department of Environmental Engineering, Technical University of Denmark, Kgs. Lyngby, Denmark; School of Civil Engineering Southeast University Nanjing, 210096, China.
| | - Qun Yan
- School of Environmental and Civil Engineering, Jiangnan University, Wuxi 214122, China
| | - Irini Angelidaki
- Department of Chemical Engineering, Technical University of Denmark, DK-2800 Kgs. Lyngby, Denmark
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9
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Novakovic J, Kontogianni N, Barampouti EM, Mai S, Moustakas K, Malamis D, Loizidou M. Towards upscaling the valorization of wheat straw residues: alkaline pretreatment using sodium hydroxide, enzymatic hydrolysis and biogas production. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2021; 28:24486-24498. [PMID: 32342419 DOI: 10.1007/s11356-020-08905-y] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/03/2020] [Accepted: 04/15/2020] [Indexed: 06/11/2023]
Abstract
Lignocellulosic biomass is considered as a recalcitrant substrate for anaerobic digestion due to its complex nature that limits its biological degradation. Therefore, suitable preprocessing for the improvement of the performance of conventional anaerobic digestion remains a challenge in the development of anaerobic digestion technology. The physical and chemical characteristics of wheat straw (WS), as a representative lignocellulosic biomass, have a significant impact on the anaerobic digestion process in terms of quantity and quality of the produced biogas. This study aimed at investigating the enzymatic saccharification and detoxification of straw prior to anaerobic digestion with the final objective of enhancing the performance of conventional anaerobic systems of recalcitrant fractions of agricultural waste. The experimental activity was performed in lab and pilot scale treating WS. Alkaline delignification of straw using sodium hydroxide (NaOH) was studied prior to enzymatic hydrolysis for the production of easily biodegradable sugars. After defining the optimum conditions for the pretreatment scheme, the anaerobic digestability of the effluents produced was measured. Finally, the final liquid effluents were fed to a pilot scale anaerobic digester of 0.5 m3 volume, applying an increasing organic loading rate (OLR) regime (in terms of chemical oxygen demand (COD) from 0.2 to 15 kg COD/m3/day). The optimum conditions for the delignification and enzymatic hydrolysis of WS were defined as 0.5 M NaOH at 50 °C for 3-5 h and 15 μL Cellic CTec2/g pretreated straw at 50 °C. It was proven that the resulting liquid effluents could be fed to an anaerobic digester in the ratio that they are produced with satisfactory COD removal efficiencies (over 70%) for OLRs up to 10 kg COD/m3/day. This value is correspondent to a hydraulic retention time of around 7.5 days, much lower than the respective one for untreated straw (over 12 days).
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Affiliation(s)
- Jelica Novakovic
- School of Chemical Engineering, Unit of Environmental Science Technology, National Technical University of Athens, 9 Heroon Polytechniou Str., Zographou Campus, GR-15780, Athens, Greece
| | - Nikoleta Kontogianni
- School of Chemical Engineering, Unit of Environmental Science Technology, National Technical University of Athens, 9 Heroon Polytechniou Str., Zographou Campus, GR-15780, Athens, Greece
| | - Elli Maria Barampouti
- School of Chemical Engineering, Unit of Environmental Science Technology, National Technical University of Athens, 9 Heroon Polytechniou Str., Zographou Campus, GR-15780, Athens, Greece
| | - Sofia Mai
- School of Chemical Engineering, Unit of Environmental Science Technology, National Technical University of Athens, 9 Heroon Polytechniou Str., Zographou Campus, GR-15780, Athens, Greece
| | - Konstantinos Moustakas
- School of Chemical Engineering, Unit of Environmental Science Technology, National Technical University of Athens, 9 Heroon Polytechniou Str., Zographou Campus, GR-15780, Athens, Greece
| | - Dimitris Malamis
- School of Chemical Engineering, Unit of Environmental Science Technology, National Technical University of Athens, 9 Heroon Polytechniou Str., Zographou Campus, GR-15780, Athens, Greece
| | - Maria Loizidou
- School of Chemical Engineering, Unit of Environmental Science Technology, National Technical University of Athens, 9 Heroon Polytechniou Str., Zographou Campus, GR-15780, Athens, Greece.
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10
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Yan W, Vadivelu V, Maspolim Y, Zhou Y. In-situ alkaline enhanced two-stage anaerobic digestion system for waste cooking oil and sewage sludge co-digestion. WASTE MANAGEMENT (NEW YORK, N.Y.) 2021; 120:221-229. [PMID: 33310598 DOI: 10.1016/j.wasman.2020.11.047] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/05/2020] [Revised: 11/15/2020] [Accepted: 11/24/2020] [Indexed: 06/12/2023]
Abstract
Anaerobic digestion is a promising way for resource recovery from waste cooking oil (WCO) due to its high bio-methanation potential. In-situ mild alkaline (pH 8) enhanced two-stage continuous stirred tank reactors (ALK-2-CSTRs) were implemented to explore its efficiency in co-digesting WCO and sewage sludge with stepwise increase of WCO in the co-substrates. Results demonstrate that the ALK-2-CSTRs effectively promoted methane yield from the co-substrates via promoting hydrolysis, long chain fatty acids (LCFAs) degradation and protecting methanogens from exposure to high concentration of LCFAs directly. The maximum methane yield of the ALK-2-CSTRs is 39.2% higher than that of a single stage CSTR system at the optimal feed mixture of 45:55 (WCO:SS [VS]). The thermophilic operation applied to the stage-1 of the ALK-2-CSTRs failed to improve the methane yield when the methanogenic performance was stable; while upon WCO overloaded, the elevated temperature mitigated the deterioration of methanogenesis by stimulating the bioconversion of the toxic LCFAs, especially the unsaturated oleic acid. Microbial community analysis reveals the ALK-2-CSTRs stimulated the growth of lipolytic bacteria and hydrogenotrophic methanogens, which suggests the hydrogenotrophic methanogenic pathway was promoted. Cost evaluation demonstrates the economical superiority of the ALK-2-CSTR over the prevailing strategies developed for enhancing methane yield from the co-substrates.
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Affiliation(s)
- Wangwang Yan
- Advanced Environmental Biotechnology Centre, Nanyang Environment and Water Research Institute, Nanyang Technological University, 1 Cleantech Loop, Cleantech One #06-08, 637141, Singapore
| | - Vel Vadivelu
- School of Chemical Engineering, Universiti Sains Malaysia, Engineering Campus, 14300 Nibong Tebal, Penang, Malaysia
| | - Yogananda Maspolim
- Advanced Environmental Biotechnology Centre, Nanyang Environment and Water Research Institute, Nanyang Technological University, 1 Cleantech Loop, Cleantech One #06-08, 637141, Singapore
| | - Yan Zhou
- Advanced Environmental Biotechnology Centre, Nanyang Environment and Water Research Institute, Nanyang Technological University, 1 Cleantech Loop, Cleantech One #06-08, 637141, Singapore; School of Civil and Environmental Engineering, Nanyang Technological University, 639798, Singapore.
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11
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Abstract
In the biogas plants, organic material is converted to biogas under anaerobic conditions through physical and biochemical processes. From supply of the raw material to the arrival of the products to customers, there are serial processes which should be sufficiently monitored for optimizing the efficiency of the whole process. In particular, the anaerobic digestion process, which consists of sequential complex biological reactions, requires improved monitoring to prevent inhibition. Conventional implemented methods at the biogas plants are not adequate for monitoring the operational parameters and finding the correlation between them. As Artificial Intelligence has been integrated in different areas of life, the integration of it into the biogas production process will be inevitable for the future of the biogas plant operation. This review paper first examines the need for monitoring at the biogas plants with giving details about the process and process monitoring as well. In the following sections, the current situation of implementations of Artificial Intelligence in the biogas plant operation and in the similar industries will be represented. Moreover, considering that all the information gathered from literature and operational needs, an implementation model will be presented.
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12
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Yang S, Li L, Peng X, Song L. Leachate microbiome profile reveals bacteria, archaea and eukaryote dynamics and methanogenic function during solid waste decomposition. BIORESOURCE TECHNOLOGY 2021; 320:124359. [PMID: 33157448 DOI: 10.1016/j.biortech.2020.124359] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/19/2020] [Revised: 10/25/2020] [Accepted: 10/27/2020] [Indexed: 06/11/2023]
Abstract
Bacterial, archaeal, and eukaryotic community composition and dynamics in leachate during solid waste decomposition were investigated using Illumina MiSeq sequencing. The functional enzyme-encoding genes of methanogenic pathways were also predicted via PICRUSt. Succession of bacterial, archaeal, and eukaryotic community composition in aerobic phase (AP), anaerobic acid phase (ACP), and methanogenic phase (MP) was observed. The main representatives of microbial phyla, genera, and species significantly (p < 0.05) differed at least two phases. Protist Ciliophora occurred at ACP and was prevalent in MP, suggesting a short food chain establishment in the methanogenesis. Bacterial, archaeal, fungi and eukaryotic community structure were all pH and biochemical oxygen demand (BOD5) dependent patter. Acetoclastic and hydrogenotrophic methanogenesis pathways with associated functional genes differed during solid waste decomposition and were inhibited in ACP.
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Affiliation(s)
- Shu Yang
- Key Laboratory of Three Gorges Reservoir Region's Eco-Environment, Ministry of Education, Chongqing University, Chongqing 400045, China
| | - Lei Li
- Key Laboratory of Three Gorges Reservoir Region's Eco-Environment, Ministry of Education, Chongqing University, Chongqing 400045, China
| | - Xuya Peng
- Key Laboratory of Three Gorges Reservoir Region's Eco-Environment, Ministry of Education, Chongqing University, Chongqing 400045, China
| | - Liyan Song
- Environmental Microbiology and Ecology Research Center, Chongqing Institute of Green and Intelligent Technology, Chinese Academy of Science, Chongqing 400714, China; School of Resources and Environmental Engineering, Anhui University, Anhui 230039, China.
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13
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Thermophilic Anaerobic Digestion of Second Cheese Whey: Microbial Community Response to H2 Addition in a Partially Immobilized Anaerobic Hybrid Reactor. Processes (Basel) 2020. [DOI: 10.3390/pr9010043] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022] Open
Abstract
In this study, we investigated thermophilic (55 °C) anaerobic digestion (AD) performance and microbial community structure, before and after hydrogen addition, in a novel hybrid gas-stirred tank reactor (GSTR) implemented with a partial immobilization of the microbial community and fed with second cheese whey (SCW). The results showed that H2 addition led to a 25% increase in the methane production rate and to a decrease of 13% in the CH4 concentration as compared with the control. The recovery of methane content (56%) was reached by decreasing the H2 flow rate. The microbial community investigations were performed on effluent (EF) and on interstitial matrix (IM) inside the immobilized area. Before H2 addition, the Anaerobaculaceae (42%) and Lachnospiraceae (27%) families dominated among bacteria in the effluent, and the Thermodesulfobiaceae (32%) and Lachnospiraceae (30%) families dominated in the interstitial matrix. After H2 addition, microbial abundance showed an increase in the bacteria and archaea communities in the interstitial matrix. The Thermodesulfobiaceae family (29%)remained dominant in the interstitial matrix, suggesting its crucial role in the immobilized community and the SHA-31 family was enriched in both the effluent (36%) and the interstitial matrix (15%). The predominance of archaea Methanothermobacter thermoautrophicus indicated that CH4 was produced almost exclusively by the hydrogenotrophic pathway.
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14
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Khafipour A, Jordaan EM, Flores-Orozco D, Khafipour E, Levin DB, Sparling R, Cicek N. Response of Microbial Community to Induced Failure of Anaerobic Digesters Through Overloading With Propionic Acid Followed by Process Recovery. Front Bioeng Biotechnol 2020; 8:604838. [PMID: 33363133 PMCID: PMC7759631 DOI: 10.3389/fbioe.2020.604838] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/10/2020] [Accepted: 11/23/2020] [Indexed: 01/18/2023] Open
Abstract
In order to effectively use microbial-based strategies to manage anaerobic digesters, it is necessary to distinguish between community shifts that are part of the natural dynamic of the system and shifts caused by environmental or operational disturbances. The objective of this research study was to evaluate the significance of changes in the microbial community of anaerobic digesters during failure in correlation to operational parameters such as an organic acid overload. Five continuously stirred 0.5 L reactors were set-up as semi-continuously-fed, mesophilic dairy manure digesters with a 30-day hydraulic retention time. After a 120-day stabilization period, two digesters were kept as controls, while the organic loading rates in the triplicate set were increased step-wise to ultimately provide a shock-load leading to failure using propionic acid spikes. Acidosis resulting in near cessation of biogas and termination of methane production occurred between 4 and 7 weeks, after which all the digesters continued to be fed only dairy manure. The shock loading of propionic acid led to an accumulation of mainly acetate and propionate, with low levels of iso-butyrate, butyrate, iso-valerate, and valerate. High-throughput Illumina sequencing of the V4 region of the bacterial and archaeal 16S rRNA gene in digester samples showed a significant change in the microbial community composition during propionic acid overload, followed by a return to the original composition with regular feedstock. Bacterial genera whose relative abundance decreased during the inhibition stage included Sedimentibacter, Syntrophomonas, TSCOR003.O20, and Marinilabiaceae, while the relative abundance of Lachnospiraceae, Ruminococcus, Mogibacteriaceae, Pyramidobacter, and Bacteroides increased. The relative abundance of dominant methanogens, Methanosarcina and Methanobacterium, although initially resistant, were decreased (from 91.71 to 12.14% and from 2.98 to 0.73%, respectively) during inhibition, while Methanobrevibacter and Methanosphaera that were prominent in the manure feedstock increased from 17.36 to 79.45% and from 0.14 to 1.12%, respectively. Shifts in bacterial and archaeal compositions, back to their pre-shock steady state after failure, highlight the digester's microbial resilience and recovery potential.
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Affiliation(s)
- Azin Khafipour
- Department of Biosystems Engineering, University of Manitoba, Winnipeg, MB, Canada
| | - Elsie M Jordaan
- Department of Biosystems Engineering, University of Manitoba, Winnipeg, MB, Canada
| | - Daniel Flores-Orozco
- Department of Biosystems Engineering, University of Manitoba, Winnipeg, MB, Canada
| | - Ehsan Khafipour
- Department of Animal Science, University of Manitoba, Winnipeg, MB, Canada
| | - David B Levin
- Department of Biosystems Engineering, University of Manitoba, Winnipeg, MB, Canada
| | - Richard Sparling
- Department of Microbiology, University of Manitoba, Winnipeg, MB, Canada
| | - Nazim Cicek
- Department of Biosystems Engineering, University of Manitoba, Winnipeg, MB, Canada
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15
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Cardona L, Cao KAL, Puig-Castellví F, Bureau C, Madigou C, Mazéas L, Chapleur O. Integrative Analyses to Investigate the Link between Microbial Activity and Metabolite Degradation during Anaerobic Digestion. J Proteome Res 2020; 19:3981-3992. [DOI: 10.1021/acs.jproteome.0c00251] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]
Affiliation(s)
- Laëtitia Cardona
- Université Paris-Saclay, INRAE, PROSE, 1 rue Pierre-Gilles de Gennes, CS 10030, 92761 Antony Cedex, France
| | - Kim Anh Lê Cao
- Melbourne Integrative Genomics, School of Mathematics and Statistics, The University of Melbourne, Parkville, VIC 3010, Australia
| | - Francesc Puig-Castellví
- Université Paris-Saclay, INRAE, PROSE, 1 rue Pierre-Gilles de Gennes, CS 10030, 92761 Antony Cedex, France
- Université Paris-Saclay, INRAE, AgroParisTech, UMR SayFood, 75005 Paris, France
| | - Chrystelle Bureau
- Université Paris-Saclay, INRAE, PROSE, 1 rue Pierre-Gilles de Gennes, CS 10030, 92761 Antony Cedex, France
| | - Céline Madigou
- Acquisitions et Analyses de Données pour l’Histoire naturelle, 2AD—UMS 2700 CNRS MNHN, Muséum national d’Histoire naturelle, CP26, 57 rue Cuvier, 75231 Paris Cedex 05, France
| | - Laurent Mazéas
- Université Paris-Saclay, INRAE, PROSE, 1 rue Pierre-Gilles de Gennes, CS 10030, 92761 Antony Cedex, France
| | - Olivier Chapleur
- Université Paris-Saclay, INRAE, PROSE, 1 rue Pierre-Gilles de Gennes, CS 10030, 92761 Antony Cedex, France
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16
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Xiao F, Li Y, Sun Y. Novel thermodynamic early warning method for anaerobic digestion failure of energy crops. BIORESOURCE TECHNOLOGY 2020; 310:123440. [PMID: 32361203 DOI: 10.1016/j.biortech.2020.123440] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/02/2020] [Revised: 04/21/2020] [Accepted: 04/22/2020] [Indexed: 06/11/2023]
Abstract
To investigate whether thermodynamic calculations of anaerobic digestion processes can be applied to the early warning for unstable anaerobic digestion, a group of semi-continuous digesters fed with an energy crop (Hybrid Pennisetum) were operated via a step-wise increase in the organic load rates until overload occurred. Traditional early warning indicators, such as biogas production and content, pH, alkalinity, and volatile fatty acids as well as the methane/carbon dioxide (CH4/CO2) and volatile fatty acid/alkalinity ratios, were regularly monitored during the process. The Gibbs free energy changes (ΔG) of the methanogenesis phases of valerate, butyrate, and propionate were calculated based on Nernst and Van't Hoff equations. The results demonstrate that ΔG of the three syntrophic methanogenesis phases can be used as an early warning indicator for unstable anaerobic digestion, indicating anaerobic digestion failure (ceased biogas production) up to 21 days in advance, that is, 1-8 days earlier than some other indicators.
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Affiliation(s)
- Fan Xiao
- Laboratory of Biomass Bio-chemical Conversion, GuangZhou Institute of Energy Conversion, Chinese Academy of Sciences, Guangzhou 510640, PR China; Key Laboratory of Renewable Energy, Chinese Academy of Sciences, Guangzhou 510640, PR China; Guangdong Provincial Key Laboratory of New and Renewable Energy Research and Development, Guangzhou 510640, PR China; University of Chinese Academy of Sciences, Beijing 100049, PR China
| | - Ying Li
- Laboratory of Biomass Bio-chemical Conversion, GuangZhou Institute of Energy Conversion, Chinese Academy of Sciences, Guangzhou 510640, PR China; Key Laboratory of Renewable Energy, Chinese Academy of Sciences, Guangzhou 510640, PR China; Guangdong Provincial Key Laboratory of New and Renewable Energy Research and Development, Guangzhou 510640, PR China
| | - Yongming Sun
- Laboratory of Biomass Bio-chemical Conversion, GuangZhou Institute of Energy Conversion, Chinese Academy of Sciences, Guangzhou 510640, PR China; Key Laboratory of Renewable Energy, Chinese Academy of Sciences, Guangzhou 510640, PR China; Guangdong Provincial Key Laboratory of New and Renewable Energy Research and Development, Guangzhou 510640, PR China.
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17
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Bedoya K, Hoyos O, Zurek E, Cabarcas F, Alzate JF. Annual microbial community dynamics in a full-scale anaerobic sludge digester from a wastewater treatment plant in Colombia. THE SCIENCE OF THE TOTAL ENVIRONMENT 2020; 726:138479. [PMID: 32305756 DOI: 10.1016/j.scitotenv.2020.138479] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/04/2020] [Revised: 04/02/2020] [Accepted: 04/03/2020] [Indexed: 05/23/2023]
Abstract
Anaerobic digestion is a microbe-driven process widely applied to treat activated sludge from municipal wastewater treatment plants. It is one of the most efficient solutions for sludge reduction along with biogas production. However, the knowledge of the microbial consortium involved in this process is still unknown in full-scale anaerobic digesters from Latin America. This study aimed to elucidate the dynamics of the microbial community of a full-scale anaerobic digester for a year using 16S rDNA amplicon sequencing with the Illumina Miseq platform. The results showed fluctuations in the frequencies of dominant phyla with a decrease of Proteobacteria and Bacteroidetes after a temporary suspension of anaerobic digester. The core community was affiliated with bacterial phyla Firmicutes, Actinobacteria, Proteobacteria, and Chloroflexi. The core community was represented by 154 OTUs that accounted for 74% of all the processed reads. The Anaerolineaceae family, within Chloroflexi phylum, was the most frequently observed taxonomic group in all samples analyzed. Despite the microbial fluctuations, the biogas production was stable over the studied year (average 66% methane production), which might indicate a functional redundancy in the microbial consortium.
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Affiliation(s)
- Katherine Bedoya
- Centro Nacional de Secuenciación Genómica - CNSG, Universidad de Antioquia, Medellín, Antioquia, Colombia
| | - Oladier Hoyos
- Empresas Públicas de Medellín-EPM, Medellín, Antioquia, Colombia
| | | | - Felipe Cabarcas
- Centro Nacional de Secuenciación Genómica - CNSG, Universidad de Antioquia, Medellín, Antioquia, Colombia; Sistemas Embebidos e Inteligencia Computacional - SISTEMIC, Facultad de Ingeniería, Universidad de Antioquia, Medellín, Antioquia, Colombia
| | - Juan F Alzate
- Centro Nacional de Secuenciación Genómica - CNSG, Universidad de Antioquia, Medellín, Antioquia, Colombia.
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18
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Zeng D, Liang K, Guo F, Wu Y, Wu G. Denitrification performance and microbial community under salinity and MIT stresses for reverse osmosis concentrate treatment. Sep Purif Technol 2020. [DOI: 10.1016/j.seppur.2020.116799] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
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19
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Wang L, Hossen EH, Aziz TN, Ducoste JJ, de Los Reyes FL. Increased loading stress leads to convergence of microbial communities and high methane yields in adapted anaerobic co-digesters. WATER RESEARCH 2020; 169:115155. [PMID: 31671296 DOI: 10.1016/j.watres.2019.115155] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/22/2019] [Revised: 07/29/2019] [Accepted: 10/02/2019] [Indexed: 06/10/2023]
Abstract
Enhancing biogas production, while avoiding inhibition of methanogenesis during co-digestion of grease interceptor waste (GIW), can help water resource recovery facilities reduce their carbon footprint. Here we used pre-adapted and non-adapted digesters to link microbial community structure to digester function. Before disturbance, the pre-adapted and non-adapted digesters showed similar methane production and microbial community diversity but dissimilar community composition. When exposed to an identical disturbance, the pre-adapted digester achieved better performance, while the non-adapted digester was inhibited. When re-exposed to disturbance after recovery, communities and performance of both digesters converged, regardless of the temporal variations. Co-digestion of up to 75% GIW added on a volatile solids (VS) basis was achieved, increasing methane yield by 336% from 0.180 to 0.785 l-methane/g-VS-added, the highest methane yield reported to date for lipid-rich waste. Progressive perturbation substantially enriched fatty acid-degrading Syntrophomonas from less than 1% to 24.6% of total 16S rRNA gene sequences, acetoclastic Methanosaeta from 2.3% to 11.9%, and hydrogenotrophic Methanospirillum from less than 1% to 6.6% in the pre-adapted digester. Specific hydrolytic and fermentative populations also increased. These ecological insights demonstrated how progressive perturbation can be strategically used to influence methanogenic microbiomes and improve co-digestion of GIW.
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Affiliation(s)
- Ling Wang
- Department of Civil, Construction and Environmental Engineering, North Carolina State University, Raleigh, NC, 27695, USA.
| | - Elvin H Hossen
- Department of Civil, Construction and Environmental Engineering, North Carolina State University, Raleigh, NC, 27695, USA
| | - Tarek N Aziz
- Department of Civil, Construction and Environmental Engineering, North Carolina State University, Raleigh, NC, 27695, USA
| | - Joel J Ducoste
- Department of Civil, Construction and Environmental Engineering, North Carolina State University, Raleigh, NC, 27695, USA
| | - Francis L de Los Reyes
- Department of Civil, Construction and Environmental Engineering, North Carolina State University, Raleigh, NC, 27695, USA
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20
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Effect of a Profound Feedstock Change on the Structure and Performance of Biogas Microbiomes. Microorganisms 2020; 8:microorganisms8020169. [PMID: 31991721 PMCID: PMC7074709 DOI: 10.3390/microorganisms8020169] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/16/2019] [Revised: 01/20/2020] [Accepted: 01/21/2020] [Indexed: 11/17/2022] Open
Abstract
In this study the response of biogas-producing microbiomes to a profound feedstock change was investigated. The microbiomes were adapted to the digestion of either 100% sugar beet, maize silage, or of the silages with elevated amounts of total ammonium nitrogen (TAN) by adding ammonium carbonate or animal manure. The feedstock exchange resulted in a short-range decrease or increase in the biogas yields according to the level of chemical feedstock complexity. Fifteen taxa were found in all reactors and can be considered as generalists. Thirteen taxa were detected in the reactors operated with low TAN and six in the reactors with high TAN concentration. Taxa assigned to the phylum Bacteroidetes and to the order Spirochaetales increased with the exchange to sugar beet silage, indicating an affinity to easily degradable compounds. The recorded TAN-sensitive taxa (phylum Cloacimonetes) showed no specific affinity to maize or sugar beet silage. The archaeal community remained unchanged. The reported findings showed a smooth adaptation of the microbial communities, without a profound negative impact on the overall biogas production indicating that the two feedstocks, sugar beet and maize silage, potentially do not contain chemical compounds that are difficult to handle during anaerobic digestion.
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21
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García-Depraect O, Diaz-Cruces VF, Rene ER, León-Becerril E. Changes in performance and bacterial communities in a continuous biohydrogen-producing reactor subjected to substrate- and pH-induced perturbations. BIORESOURCE TECHNOLOGY 2020; 295:122182. [PMID: 31623922 DOI: 10.1016/j.biortech.2019.122182] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/09/2019] [Revised: 09/17/2019] [Accepted: 09/18/2019] [Indexed: 06/10/2023]
Abstract
The performance and microbial communities of a continuous dark fermentation reactor exposed to perturbations induced by substrate change and acidic pH shock were investigated. A mesophilic well-mixed reactor separately fed with two types of tequila vinasses (TVs) and lactose was operated at a fixed pH of 5.5, except during short-term pH (3.8) stress, for ~61 days at decreasing hydraulic retention times (HRTs) from 24 to 4 h. During the first ~23 days of operation with TV, a decrease in HRT down to 4 h resulted in the highest reported biohydrogen productivity from TV of 12.4 NL/L-d. It was shown that abrupt change in TV type (even with temporal feeding of lactose) and transient over-acidification impaired the normal operation of the reactor. However, it rapidly recovered from such disturbances, sustaining similar high-rate productivity to that previously encountered. Recovery was attributed to resistant and resilient microbial community features, as supported by molecular characterisation.
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Affiliation(s)
- Octavio García-Depraect
- Department of Environmental Technology, Centro de Investigación y Asistencia en Tecnología y Diseño del Estado de Jalisco, A.C., Av. Normalistas 800, Col. Colinas de la Normal, C.P. 44270 Guadalajara, Jalisco, Mexico
| | - Víctor F Diaz-Cruces
- Department of Environmental Technology, Centro de Investigación y Asistencia en Tecnología y Diseño del Estado de Jalisco, A.C., Av. Normalistas 800, Col. Colinas de la Normal, C.P. 44270 Guadalajara, Jalisco, Mexico
| | - Eldon R Rene
- Department of Environmental Engineering and Water Technology, UNESCO-IHE Institute for Water Education, P. O. Box 3015, 2601 DA Delft, the Netherlands
| | - Elizabeth León-Becerril
- Department of Environmental Technology, Centro de Investigación y Asistencia en Tecnología y Diseño del Estado de Jalisco, A.C., Av. Normalistas 800, Col. Colinas de la Normal, C.P. 44270 Guadalajara, Jalisco, Mexico.
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22
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Fernandez‐Gonzalez N, Pedizzi C, Lema JM, Carballa M. Air-side ammonia stripping coupled to anaerobic digestion indirectly impacts anaerobic microbiome. Microb Biotechnol 2019; 12:1403-1416. [PMID: 31532080 PMCID: PMC6801131 DOI: 10.1111/1751-7915.13482] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/11/2018] [Revised: 06/26/2019] [Accepted: 08/13/2019] [Indexed: 11/29/2022] Open
Abstract
Air-side stripping without a prior solid-liquid phase separation step is a feasible and promising process to control ammonia concentration in thermophilic digesters. During the process, part of the anaerobic biomass is exposed to high temperature, high pH and aerobic conditions. However, there are no studies assessing the effects of those harsh conditions on the microbial communities of thermophilic digesters. To fill this knowledge gap, the microbiomes of two thermophilic digesters (55°C), fed with a mixture of pig manure and nitrogen-rich co-substrates, were investigated under different organic loading rates (OLR: 1.1-5.2 g COD l-1 day-1 ), ammonia concentrations (0.2-1.5 g free ammonia nitrogen l-1 ) and stripping frequencies (3-5 times per week). The bacterial communities were dominated by Firmicutes and Bacteroidetes phyla, while the predominant methanogens were Methanosarcina sp archaea. Increasing co-substrate fraction, OLR and free ammonia nitrogen (FAN) favoured the presence of genera Ruminiclostridium, Clostridium and Tepidimicrobium and of hydrogenotrophic methanogens, mainly Methanoculleus archaea. The data indicated that the use of air-side stripping did not adversely affect thermophilic microbial communities, but indirectly modulated them by controlling FAN concentrations in the digester. These results demonstrate the viability at microbial community level of air side-stream stripping process as an adequate technology for the ammonia control during anaerobic co-digestion of nitrogen-rich substrates.
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Affiliation(s)
- Nuria Fernandez‐Gonzalez
- Department of Chemical EngineeringUniversidade de Santiago de CompostelaRúa Lope Gómez de Marzoa, s/n.15782Santiago de CompostelaSpain
- Present address:
Present address:Department of Chemical Engineering and Environmental TechnologyValladolid UniversityDr. Mergelina, s/n47011ValladolidSpain
| | - Chiara Pedizzi
- Department of Chemical EngineeringUniversidade de Santiago de CompostelaRúa Lope Gómez de Marzoa, s/n.15782Santiago de CompostelaSpain
| | - Juan M. Lema
- Department of Chemical EngineeringUniversidade de Santiago de CompostelaRúa Lope Gómez de Marzoa, s/n.15782Santiago de CompostelaSpain
| | - Marta Carballa
- Department of Chemical EngineeringUniversidade de Santiago de CompostelaRúa Lope Gómez de Marzoa, s/n.15782Santiago de CompostelaSpain
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23
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Iglesias-Iglesias R, Campanaro S, Treu L, Kennes C, Veiga MC. Valorization of sewage sludge for volatile fatty acids production and role of microbiome on acidogenic fermentation. BIORESOURCE TECHNOLOGY 2019; 291:121817. [PMID: 31374412 DOI: 10.1016/j.biortech.2019.121817] [Citation(s) in RCA: 34] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/25/2019] [Revised: 07/12/2019] [Accepted: 07/15/2019] [Indexed: 06/10/2023]
Abstract
This work explored the production of volatile fatty acids (VFA) through the anaerobic digestion of sewage sludge (SS). The first experiment took place at batch scale to evaluate the combined effect of using a thermal pre-treatment (120 °C, 15 min) and different Substrate/Inoculum ratios (S/I) (1, 2, 4 and 6 g VS substrate/g VS inoculum) on the acidogenic potential of the SS. The results showed that the thermal pre-treatment influenced positively the degree of acidification of the SS at low S/I ratios, reaching maximum of 45%. Afterwards, a continuous lab-scale experiment, was set-up to study two ranges of organic loading rates (OLR): 1300-1600 mg COD L-1 d-1 and 2400-3500 mg COD L-1 d-1. The highest degree of acidification (22%) was achieved at the lowest OLR. Analysis of the microbial community in the reactor revealed that OTUs most abundant present genes related with amino acids and carbohydrates fermentation being crucial for VFA production.
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Affiliation(s)
- Ruth Iglesias-Iglesias
- Chemical Engineering Laboratory, Faculty of Sciences and Centre for Advanced Scientific Research (CICA), University of Coruña, Rua da Fraga 10, E - 15008 A Coruña, Spain
| | - Stefano Campanaro
- Department of Biology, University of Padova, Via U. Bassi 58/b, Padova 35131, Italy; CRIBI Biotechnology Center, University of Padova, Viale G. Colombo 3, Padova 35131, Italy
| | - Laura Treu
- Department of Biology, University of Padova, Via U. Bassi 58/b, Padova 35131, Italy
| | - Christian Kennes
- Chemical Engineering Laboratory, Faculty of Sciences and Centre for Advanced Scientific Research (CICA), University of Coruña, Rua da Fraga 10, E - 15008 A Coruña, Spain
| | - Maria C Veiga
- Chemical Engineering Laboratory, Faculty of Sciences and Centre for Advanced Scientific Research (CICA), University of Coruña, Rua da Fraga 10, E - 15008 A Coruña, Spain.
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24
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Zhao Y, Xu C, Ai S, Wang H, Gao Y, Yan L, Mei Z, Wang W. Biological pretreatment enhances the activity of functional microorganisms and the ability of methanogenesis during anaerobic digestion. BIORESOURCE TECHNOLOGY 2019; 290:121660. [PMID: 31326651 DOI: 10.1016/j.biortech.2019.121660] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/26/2019] [Revised: 06/13/2019] [Accepted: 06/15/2019] [Indexed: 06/10/2023]
Abstract
Biological pretreatment can increase the methane production of anaerobic digestion. In this study, stover was pretreated via microbial consortium prior to anaerobic digestion; through 16S rRNA gene and 16S rRNA amplicon sequencing and metatranscriptomic analysis, and the effects of the pretreatment on the microbial community and critical factors of the increased methane production were studied. Microbial community structure was less affected by the pretreatment, which ensures the stable performance of anaerobic digestion. The methane production increased by 62.85% at the peak phase compared to the untreated stover. The activity of Methanosaeta increased from 2.0% to 10.1%, significantly enhancing the ability of the community to capture acetic acid and reduce CO2 to methane. The main contribution to the increase in methane production was a unique acetyl-CoA synthetase, which showed significant up-regulation (121.8%). This research demonstrated the importance of Methanosaeta and its unique metabolic pathways in anaerobic digestion utilizing a biological pretreatment.
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Affiliation(s)
- Yiquan Zhao
- Heilongjiang Provincial Key Laboratory of Environmental Microbiology and Recycling of Argo-Waste in Cold Region, College of Life Science and Technology, Heilongjiang Bayi Agricultural University, Daqing 163319, PR China
| | - Congfeng Xu
- Heilongjiang Provincial Key Laboratory of Environmental Microbiology and Recycling of Argo-Waste in Cold Region, College of Life Science and Technology, Heilongjiang Bayi Agricultural University, Daqing 163319, PR China
| | - Shiqi Ai
- Heilongjiang Provincial Key Laboratory of Environmental Microbiology and Recycling of Argo-Waste in Cold Region, College of Life Science and Technology, Heilongjiang Bayi Agricultural University, Daqing 163319, PR China
| | - Haipeng Wang
- Heilongjiang Provincial Key Laboratory of Environmental Microbiology and Recycling of Argo-Waste in Cold Region, College of Life Science and Technology, Heilongjiang Bayi Agricultural University, Daqing 163319, PR China
| | - Yamei Gao
- Heilongjiang Provincial Key Laboratory of Environmental Microbiology and Recycling of Argo-Waste in Cold Region, College of Life Science and Technology, Heilongjiang Bayi Agricultural University, Daqing 163319, PR China
| | - Lei Yan
- Heilongjiang Provincial Key Laboratory of Environmental Microbiology and Recycling of Argo-Waste in Cold Region, College of Life Science and Technology, Heilongjiang Bayi Agricultural University, Daqing 163319, PR China
| | - Zili Mei
- Biogas Institute of Ministry of Agriculture and Rural Affairs, 610041 Chengdu, PR China
| | - Weidong Wang
- Heilongjiang Provincial Key Laboratory of Environmental Microbiology and Recycling of Argo-Waste in Cold Region, College of Life Science and Technology, Heilongjiang Bayi Agricultural University, Daqing 163319, PR China.
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25
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Fischer MA, Ulbricht A, Neulinger SC, Refai S, Waßmann K, Künzel S, Schmitz RA. Immediate Effects of Ammonia Shock on Transcription and Composition of a Biogas Reactor Microbiome. Front Microbiol 2019; 10:2064. [PMID: 31555248 PMCID: PMC6742706 DOI: 10.3389/fmicb.2019.02064] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/11/2019] [Accepted: 08/21/2019] [Indexed: 12/22/2022] Open
Abstract
The biotechnological process of biogas production from organic material is carried out by a diverse microbial community under anaerobic conditions. However, the complex and sensitive microbial network present in anaerobic degradation of organic material can be disturbed by increased ammonia concentration introduced into the system by protein-rich substrates and imbalanced feeding. Here, we report on a simulated increase of ammonia concentration in a fed batch lab-scale biogas reactor experiment. Two treatment conditions were used simulating total ammonia nitrogen concentrations of 4.9 and 8.0 g/L with four replicate reactors. Each reactor was monitored concerning methane generation and microbial composition using 16S rRNA gene amplicon sequencing, while the transcriptional activity of the overall process was investigated by metatranscriptomic analysis. This allowed investigating the response of the microbial community in terms of species composition and transcriptional activity to a rapid upshift to high ammonia conditions. Clostridia and Methanomicrobiales dominated the microbial community throughout the entire experiment under both experimental conditions, while Methanosarcinales were only present in minor abundance. Transcription analysis demonstrated clostridial dominance with respect to genes encoding for enzymes of the hydrolysis step (cellulase, EC 3.2.1.4) as well as dominance of key genes for enzymes of the methanogenic pathway (methyl-CoM reductase, EC 2.8.4.1; heterodisulfide reductase, EC 1.8.98.1). Upon ammonia shock, the selected marker genes showed significant changes in transcriptional activity. Cellulose hydrolysis as well as methanogenesis were significantly reduced at high ammonia concentrations as indicated by reduced transcription levels of the corresponding genes. Based on these experiments we concluded that, apart from the methanogenic archaea, hydrolytic cellulose-degrading microorganisms are negatively affected by high ammonia concentrations. Further, Acholeplasma and Erysipelotrichia showed lower abundance under increased ammonia concentrations and thus might serve as indicator species for an earlier detection in order to counteract against ammonia crises.
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Affiliation(s)
- Martin A. Fischer
- Department of Biology, Institute of General Microbiology, Christian-Albrechts-University Kiel, Kiel, Germany
| | - Andrea Ulbricht
- Department of Biology, Institute of General Microbiology, Christian-Albrechts-University Kiel, Kiel, Germany
| | - Sven C. Neulinger
- Department of Biology, Institute of General Microbiology, Christian-Albrechts-University Kiel, Kiel, Germany
| | - Sarah Refai
- Department of Biology, Institut für Mikrobiologie und Biotechnologie, University Bonn, Bonn, Germany
| | - Kati Waßmann
- Department of Biology, Institut für Mikrobiologie und Biotechnologie, University Bonn, Bonn, Germany
| | - Sven Künzel
- Department for Evolutionary Genetics, Max-Planck-Institute for Evolutionary Biology, Plön, Germany
| | - Ruth A. Schmitz
- Department of Biology, Institute of General Microbiology, Christian-Albrechts-University Kiel, Kiel, Germany
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26
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Utilization of Food and Agricultural Residues for a Flexible Biogas Production: Process Stability and Effects on Needed Biogas Storage Capacities. ENERGIES 2019. [DOI: 10.3390/en12142678] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
Biogas plants can contribute to future energy systems’ stability through flexible power generation. To provide power flexibly, a demand-oriented biogas supply is necessary, which may be ensured by applying flexible feeding strategies. In this study, the impacts of applying three different feeding strategies (1x, 3x and 9x feeding per day) on the biogas and methane production and process stability parameters were determined for a biogas plant with a focus on waste treatment. Two feedstocks that differed in (1) high fat and (2) higher carbohydrate content were investigated during semi-continuous fermentation tests. Measurements of the short chain fatty acids concentration, pH value, TVA/TIC ratio and total ammonium and ammonia content along with a molecular biology analysis were conducted to assess the effects on process stability. The results show that flexible biogas production can be obtained without negative impacts on the process performance and that production peaks in biogas and methane can be significantly shifted to another time by changing feeding intervals. Implementing the fermentation tests’ results into a biogas plant simulation model and an assessment of power generation scenarios focusing on peak-time power generation revealed a considerable reduction potential for the needed biogas storage capacity of up to 73.7%.
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27
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Ali N, Gong H, Giwa AS, Yuan Q, Wang K. Metagenomic analysis and characterization of acidogenic microbiome and effect of pH on organic acid production. Arch Microbiol 2019; 201:1163-1171. [PMID: 31172250 DOI: 10.1007/s00203-019-01676-2] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/24/2018] [Revised: 05/02/2019] [Accepted: 05/11/2019] [Indexed: 01/14/2023]
Abstract
Organic acid production including lactate and acetate is an economically attractive technology that has gained momentum worldwide over the past years. These series of action need to be performed by an esoteric and complex microbial community, in which different members have distinct roles in the establishment of a collective organization. In this study, we analyzed the bioma from bioreactors with various pH conditions of 4.0, 5.0 and 6.0 (R1, R2 and R3), respectively, involved in acidogenic digestion for stable production of various organic acids by means of high-throughput Illumina sequencing, disclosing thousands of genes and extracting more than 53 microbial genomes. At pH 5.0, the hydrolysis reaction was enhanced and thus the lactic acid fermentation was stably improved to 45.96 mm/L and acetic acid to 73.77 mm/L. R2 was found with the most suitable pH condition for stable organic acids production as Lactobacilli and Bifidobacteria were the major members. Both the members have the key roles in heterofermentation and produce higher transcripts of key encoding enzymes involved in the dominant heterofermentation pathways.
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Affiliation(s)
- Nasir Ali
- State Key Joint Laboratory of Environment Simulation and Pollution Control, School of Environment, Tsinghua University, Beijing, 100084, China.,Qingdao Institute of Bioenergy and Bioprocess Technology, University of Chinese Academy of Sciences, Qingdao, 266101, Shandong Province, People's Republic of China
| | - Hui Gong
- State Key Joint Laboratory of Environment Simulation and Pollution Control, School of Environment, Tsinghua University, Beijing, 100084, China
| | - Abdulmoseen Segun Giwa
- State Key Joint Laboratory of Environment Simulation and Pollution Control, School of Environment, Tsinghua University, Beijing, 100084, China
| | - Quan Yuan
- State Key Joint Laboratory of Environment Simulation and Pollution Control, School of Environment, Tsinghua University, Beijing, 100084, China
| | - Kaijun Wang
- State Key Joint Laboratory of Environment Simulation and Pollution Control, School of Environment, Tsinghua University, Beijing, 100084, China.
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28
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Interactive Effects of Chemical Composition of Food Waste during Anaerobic Co-Digestion under Thermophilic Temperature. SUSTAINABILITY 2019. [DOI: 10.3390/su11102933] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
Abstract
The effects of chemical composition (carbohydrates, lipids, and protein) on the anaerobic co-digestion performance of food wastes (FW) were investigated from the viewpoints of methane production, dynamic parameters, and microbial community structure. The results of this study showed that a notable gasification rate was positively correlated with the proportion of the composition. A T2 reactor, which consisted of 60% carbohydrates, 20% lipids, and 20% protein, held a higher gasification rate of 65.09% compared to other groups, while its process parameters showed some deficiency regarding the stability of digestion, especially for low biochemical methane potential (BMP), which was not beneficial for the actual practice. A T4 reactor, with a highest gasification rate of 70.68%, held the maximum BMP (497.44 mL/g VS). The stable chemical parameters achieved the optimal proportion, consisting of 40% carbohydrates, 40% lipids, and 20% protein. Furthermore, its microbial populations were rich and achieved a balance of the two main dominant communities of acetoclastic methanogens and hydrogenotrophic methanogens, whose relative abundance was close. It was obvious that interactive effects were caused by different proportional composition, which led to constantly changing chemical parameters and microbial community.
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29
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Wu Y, Kovalovszki A, Pan J, Lin C, Liu H, Duan N, Angelidaki I. Early warning indicators for mesophilic anaerobic digestion of corn stalk: a combined experimental and simulation approach. BIOTECHNOLOGY FOR BIOFUELS 2019; 12:106. [PMID: 31073330 PMCID: PMC6498497 DOI: 10.1186/s13068-019-1442-7] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/29/2019] [Accepted: 04/16/2019] [Indexed: 05/30/2023]
Abstract
BACKGROUND Monitoring and providing early warning are essential operations in the anaerobic digestion (AD) process. However, there are still several challenges for identifying the early warning indicators and their thresholds. One particular challenge is that proposed strategies are only valid under certain conditions. Another is the feasibility and universality of the detailed threshold values obtained from different AD systems. In this article, we report a novel strategy for identifying early warning indicators and defining threshold values via a combined experimental and simulation approach. RESULTS The AD of corn stalk (CS) was conducted using mesophilic, completely stirred anaerobic reactors. Two overload modes (organic and hydraulic) and overload types (sudden and gradual) were applied in order to identify early warning indicators of the process and determine their threshold values. To verify the selection of experimental indicators, a combined experimental and simulation approach was adopted, using a modified anaerobic bioconversion mathematical model (BioModel). Results revealed that the model simulations agreed well with the experimental data. Furthermore, the ratio of intermediate alkalinity to bicarbonate alkalinity (IA/BA) and volatile fatty acids (VFAs) were selected as the most potent early warning indicators, with warning times of 7 days and 5-8 days, respectively. In addition, IA, BA, and VFA/BA were identified as potential auxiliary indicators for diagnosing imbalances in the AD system. The relative variations for indicators based on that of steady state were observed instead of the absolute threshold values, which make the early warning more feasible and universal. CONCLUSION The strategy of a combined approach presented that the model is promising tool for selecting and monitoring early warning indicators in various corn stalk AD scenarios. This study may offer insight into industrial application of early warning in AD system with mathematical model.
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Affiliation(s)
- Yiran Wu
- College of Water Resources and Civil Engineering, China Agricultural University, Beijing, 100083 China
| | - Adam Kovalovszki
- Department of Environmental Engineering, Technical University of Denmark, 2800 Kgs. Lyngby, Denmark
| | - Jiahao Pan
- College of Water Resources and Civil Engineering, China Agricultural University, Beijing, 100083 China
| | - Cong Lin
- College of Water Resources and Civil Engineering, China Agricultural University, Beijing, 100083 China
| | - Hongbin Liu
- Key Laboratory of Nonpoint Source Pollution Control, Ministry of Agriculture/Institute of Agricultural Resources and Regional Planning, Chinese Academy of Agricultural Sciences, Beijing, 100081 China
| | - Na Duan
- College of Water Resources and Civil Engineering, China Agricultural University, Beijing, 100083 China
| | - Irini Angelidaki
- Department of Environmental Engineering, Technical University of Denmark, 2800 Kgs. Lyngby, Denmark
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30
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Planý M, Czolderová M, Kraková L, Puškárová A, Bučková M, Šoltys K, Budiš J, Szemes T, Mackulak T, Wu JH, Pangallo D. Biogas production: evaluation of the influence of K2FeO4 pretreatment of maple leaves (Acer platanoides) on microbial consortia composition. Bioprocess Biosyst Eng 2019; 42:1151-1163. [DOI: 10.1007/s00449-019-02112-x] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/28/2018] [Accepted: 03/20/2019] [Indexed: 10/27/2022]
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31
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Zeng D, Yin Q, Du Q, Wu G. System performance and microbial community in ethanol-fed anaerobic reactors acclimated with different organic carbon to sulfate ratios. BIORESOURCE TECHNOLOGY 2019; 278:34-42. [PMID: 30669029 DOI: 10.1016/j.biortech.2019.01.047] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/01/2018] [Revised: 01/09/2019] [Accepted: 01/11/2019] [Indexed: 06/09/2023]
Abstract
Sulfate influences the organics removal and methanogenic performance during anaerobic wastewater treatment. System performance, microbial community and metabolic pathways in ethanol-fed anaerobic reactors were investigated under different COD/SO42- ratios (2, 1 and 0.67) and control without sulfate addition. The sulfate removal percentages declined (99%, 60% and 49%) with decreasing COD/SO42- ratios, and methanogenesis was completely inhibited. Acetate accumulated to 903-734 mg/L, though propionate was constantly lower than 30 mg/L. Without sulfate, acetate and propionate did not accumulate, despite the extended time for propionate degradation. Incomplete oxidizing sulfate reducing bacteria (Desulfobulbus and Desulfomicrobium) and hydrolysis-acidification genera (Treponema and Bacteroidales) predominated but could not degrade acetate. Desulfobulbus was the key genus for propionate degradation through the pyruvate & propanoate metabolism pathway. Pseudomonas and Desulfobulbus, possessing genes encoding Type IV pili and cytochrome c6 OmcF, respectively, potentially participated in the direct interspecies electron transfer in sulfate-rich conditions.
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Affiliation(s)
- Danfei Zeng
- Guangdong Province Engineering Research Center for Urban Water Recycling and Environmental Safety, Graduate School at Shenzhen, Tsinghua University, Shenzhen 518055, Guangdong, China
| | - Qidong Yin
- Guangdong Province Engineering Research Center for Urban Water Recycling and Environmental Safety, Graduate School at Shenzhen, Tsinghua University, Shenzhen 518055, Guangdong, China
| | - Qing Du
- Guangdong Province Engineering Research Center for Urban Water Recycling and Environmental Safety, Graduate School at Shenzhen, Tsinghua University, Shenzhen 518055, Guangdong, China
| | - Guangxue Wu
- Guangdong Province Engineering Research Center for Urban Water Recycling and Environmental Safety, Graduate School at Shenzhen, Tsinghua University, Shenzhen 518055, Guangdong, China.
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32
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Pyzik A, Ciezkowska M, Krawczyk PS, Sobczak A, Drewniak L, Dziembowski A, Lipinski L. Comparative analysis of deep sequenced methanogenic communities: identification of microorganisms responsible for methane production. Microb Cell Fact 2018; 17:197. [PMID: 30572955 PMCID: PMC6302309 DOI: 10.1186/s12934-018-1043-3] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/16/2018] [Accepted: 12/11/2018] [Indexed: 12/15/2022] Open
Abstract
BACKGROUND Although interactions between microorganisms involved in biogas production are largely uncharted, it is commonly accepted that methanogenic Archaea are essential for the process. Methanogens thrive in various environments, but the most extensively studied communities come from biogas plants. In this study, we employed a metagenomic analysis of deeply sequenced methanogenic communities, which allowed for comparison of taxonomic and functional diversity as well as identification of microorganisms directly involved in various stages of methanogenesis pathways. RESULTS A comprehensive metagenomic approach was used to compare seven environmental communities, originating from an agricultural biogas plant, cattle-associated samples, a lowland bog, sewage sludge from a wastewater treatment plant and sediments from an ancient gold mine. In addition to the native consortia, two laboratory communities cultivated on maize silage as the sole substrate were also analyzed. Results showed that all anaerobic communities harbored genes of all known methanogenesis pathways, but their abundance varied greatly between environments and that genes were encoded by different methanogens. Identification of microorganisms directly involved in different stages of methane production revealed that hydrogenotrophic methanogens, such as Methanoculleus, Methanobacterium, Methanobrevibacter, Methanocorpusculum or Methanoregula, predominated in most native communities, whereas acetoclastic Methanosaeta seemed to be the key methanogen in the wastewater treatment plant. Furthermore, in many environments, the methylotrophic pathway carried out by representatives of Methanomassiliicoccales, such as Candidatus Methanomethylophilus and Candidatus Methanoplasma, seemed to play an important role in methane production. In contrast, in stable laboratory reactors substrate versatile Methanosarcina predominated. CONCLUSIONS The metagenomic approach presented in this study allowed for deep exploration and comparison of nine environments in which methane production occurs. Different abundance of methanogenesis-related functions was observed and the functions were analyzed in the phylogenetic context in order to identify microbes directly involved in methane production. In addition, a comparison of two metagenomic analytical tools, MG-RAST and MetAnnotate, revealed that combination of both allows for a precise characterization of methanogenic communities.
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Affiliation(s)
- Adam Pyzik
- Institute of Biochemistry and Biophysics, Polish Academy of Sciences, Pawinskiego 5a, 02-106, Warsaw, Poland
| | - Martyna Ciezkowska
- Laboratory of Environmental Pollution Analysis, Faculty of Biology, University of Warsaw, Miecznikowa 1, 02-096, Warsaw, Poland
| | - Pawel S Krawczyk
- Institute of Biochemistry and Biophysics, Polish Academy of Sciences, Pawinskiego 5a, 02-106, Warsaw, Poland
| | - Adam Sobczak
- Institute of Biochemistry and Biophysics, Polish Academy of Sciences, Pawinskiego 5a, 02-106, Warsaw, Poland.,Institute of Genetics and Biotechnology, Faculty of Biology, University of Warsaw, Pawinskiego 5a, 02-106, Warsaw, Poland
| | - Lukasz Drewniak
- Laboratory of Environmental Pollution Analysis, Faculty of Biology, University of Warsaw, Miecznikowa 1, 02-096, Warsaw, Poland
| | - Andrzej Dziembowski
- Institute of Biochemistry and Biophysics, Polish Academy of Sciences, Pawinskiego 5a, 02-106, Warsaw, Poland.,Institute of Genetics and Biotechnology, Faculty of Biology, University of Warsaw, Pawinskiego 5a, 02-106, Warsaw, Poland
| | - Leszek Lipinski
- Institute of Biochemistry and Biophysics, Polish Academy of Sciences, Pawinskiego 5a, 02-106, Warsaw, Poland.
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33
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Kong D, Zhang K, Liang J, Gao W, Du L. Methanogenic community during the anaerobic digestion of different substrates and organic loading rates. Microbiologyopen 2018; 8:e00709. [PMID: 30112808 PMCID: PMC6528610 DOI: 10.1002/mbo3.709] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/29/2018] [Revised: 05/27/2018] [Accepted: 07/09/2018] [Indexed: 11/25/2022] Open
Abstract
Three anaerobic reactors using pig manure (PM), maize straw (MS), and a mixture of the two as substrates were compared for archaeal community structure and diversity, and for methanogens response to increased organic loading rate (OLR, expressed in the mass of volatile solid (VS)). Methanogenic archaeal richness during codigestion of pig manure with maize straw (ACE: 2412) was greater than that during the others (ACE: 1225, 1467) at an OLR of 4 g L−1 day−1, accompanied by high specific methane yield. Euryarchaeota and Crenarchaeota predominated during overall digestion of different substrates; with relative abundances of 63.5%–99.0% and 1.0%–36.3%, respectively. Methanosarcina was the predominant genus that accounted for 33.7%–79.8% of the archaeal community. The diversity in the PM digester decreased with increase in OLR, but increased in the MS digester. The diversity was stable during the codigestion with increased OLR. The relative abundances of hydrogenotrophic methanogens increased by 2.6 and 2.1 folds; the methanogenic community shifted from acetoclastic to hydrogenotrophic methanogens during digestion of MS, and of the mixture of MS and PM. Canonical correspondence analysis revealed a strong relationship between reactor parameters and methanogenic community.
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Affiliation(s)
- Dewang Kong
- Agro-Environmental Protection Institute, Ministry of Agriculture, Tianjin, China.,College of Land and Environment, Shenyang Agricultural University, Shenyang, China
| | - Keqiang Zhang
- Agro-Environmental Protection Institute, Ministry of Agriculture, Tianjin, China
| | - Junfeng Liang
- Agro-Environmental Protection Institute, Ministry of Agriculture, Tianjin, China
| | - Wenxuan Gao
- Agro-Environmental Protection Institute, Ministry of Agriculture, Tianjin, China
| | - Lianzhu Du
- Agro-Environmental Protection Institute, Ministry of Agriculture, Tianjin, China
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34
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Substrate-Induced Response in Biogas Process Performance and Microbial Community Relates Back to Inoculum Source. Microorganisms 2018; 6:microorganisms6030080. [PMID: 30081593 PMCID: PMC6163493 DOI: 10.3390/microorganisms6030080] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/25/2018] [Revised: 08/01/2018] [Accepted: 08/02/2018] [Indexed: 12/31/2022] Open
Abstract
This study investigated whether biogas reactor performance, including microbial community development, in response to a change in substrate composition is influenced by initial inoculum source. For the study, reactors previously operated with the same grass–manure mixture for more than 120 days and started with two different inocula were used. These reactors initially showed great differences depending on inoculum source, but eventually showed similar performance and overall microbial community structure. At the start of the present experiment, the substrate was complemented with milled feed wheat, added all at once or divided into two portions. The starting hypothesis was that process performance depends on initial inoculum source and microbial diversity, and thus that reactor performance is influenced by the feeding regime. In response to the substrate change, all reactors showed increases and decreases in volumetric and specific methane production, respectively. However, specific methane yield and development of the microbial community showed differences related to the initial inoculum source, confirming the hypothesis. However, the different feeding regimes had only minor effects on process performance and overall community structure, but still induced differences in the cellulose-degrading community and in cellulose degradation.
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35
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Gonzalez-Fernandez C, Barreiro-Vescovo S, de Godos I, Fernandez M, Zouhayr A, Ballesteros M. Biochemical methane potential of microalgae biomass using different microbial inocula. BIOTECHNOLOGY FOR BIOFUELS 2018; 11:184. [PMID: 29988471 PMCID: PMC6025826 DOI: 10.1186/s13068-018-1188-7] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 04/17/2018] [Accepted: 06/25/2018] [Indexed: 06/08/2023]
Abstract
BACKGROUND Microalgae biomass is regarded as a potential feedstock for bioenergy purposes through anaerobic digestion (AD). Even though AD is a well-proven technology, the use of new feedstocks requires in-depth studies. A lot of research has been conducted assessing methane yield without paying attention to the anaerobic microbiome and their activities. For such a goal, the present investigation was designed to link methane yield to those two later sludge characteristics. In this sense, different anaerobic sources were tested, namely adapted to microalgae biomass and adapted to sewage sludge. RESULTS Despite the registered differences for the anaerobic microbiome analysis and specific methane activities towards model substrates, sludge adapted to digest sewage sludge did not affect the methane yield of Chlorella sorokiniana and Scenedesmus sp. Opposite to that, sludge samples adapted to digest microalgae exhibited a concomitant increase in methane yield together with increasing digestion temperatures. More specifically, the values attained were 63.4 ± 1.5, 79.2 ± 3.1 and 108.2 ± 1.9 mL CH4 g COD in-1 for psychrophilic, mesophilic and thermophilic digestions, respectively. While psycro- and mesophilic digestion supported similar yields (most probably linked to their anaerobic microbiome resemblance), the values attained for thermophilic digestion evidenced the usefulness of having a highly specific microbiome. The relative abundance of Firmicutes, particularly Clostridia, and Proteobacteria together with an important abundance of hydrogenotrophic methanogens was highlighted in this inoculum. CONCLUSION Overall, this study showed that working with tailored anaerobic microbiome could help avoiding pretreatments devoted to methane yield enhancement.
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Affiliation(s)
| | | | | | | | | | - Mercedes Ballesteros
- Biotechnological Processes Unit, IMDEA Energy, Madrid, Spain
- Biofuels Unit, CIEMAT, Madrid, Spain
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36
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Ziels RM, Svensson BH, Sundberg C, Larsson M, Karlsson A, Yekta SS. Microbial rRNA gene expression and co-occurrence profiles associate with biokinetics and elemental composition in full-scale anaerobic digesters. Microb Biotechnol 2018; 11:694-709. [PMID: 29633555 PMCID: PMC6011980 DOI: 10.1111/1751-7915.13264] [Citation(s) in RCA: 31] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/12/2017] [Revised: 03/05/2018] [Accepted: 03/07/2018] [Indexed: 11/29/2022] Open
Abstract
This study examined whether the abundance and expression of microbial 16S rRNA genes were associated with elemental concentrations and substrate conversion biokinetics in 20 full-scale anaerobic digesters, including seven municipal sewage sludge (SS) digesters and 13 industrial codigesters. SS digester contents had higher methane production rates from acetate, propionate and phenyl acetate compared to industrial codigesters. SS digesters and industrial codigesters were distinctly clustered based on their elemental concentrations, with higher concentrations of NH3 -N, Cl, K and Na observed in codigesters. Amplicon sequencing of 16S rRNA genes and reverse-transcribed 16S rRNA revealed divergent grouping of microbial communities between mesophilic SS digesters, mesophilic codigesters and thermophilic digesters. Higher intradigester distances between Archaea 16S rRNA and rRNA gene profiles were observed in mesophilic codigesters, which also had the lowest acetate utilization biokinetics. Constrained ordination showed that microbial rRNA and rRNA gene profiles were significantly associated with maximum methane production rates from acetate, propionate, oleate and phenyl acetate, as well as concentrations of NH3 -N, Fe, S, Mo and Ni. A co-occurrence network of rRNA gene expression confirmed the three main clusters of anaerobic digester communities based on active populations. Syntrophic and methanogenic taxa were highly represented within the subnetworks, indicating that obligate energy-sharing partnerships play critical roles in stabilizing the digester microbiome. Overall, these results provide new evidence showing that different feed substrates associate with different micronutrient compositions in anaerobic digesters, which in turn may influence microbial abundance, activity and function.
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Affiliation(s)
- Ryan M Ziels
- Department of Civil Engineering, The University of British Columbia, Vancouver, BC, Canada
| | - Bo H Svensson
- Department of Thematic Studies-Environmental Change, Linköping University, Linköping, Sweden.,Biogas Research Center, Linköping University, Linköping, Sweden
| | - Carina Sundberg
- Department of Thematic Studies-Environmental Change, Linköping University, Linköping, Sweden
| | - Madeleine Larsson
- Department of Thematic Studies-Environmental Change, Linköping University, Linköping, Sweden.,Biogas Research Center, Linköping University, Linköping, Sweden
| | | | - Sepehr Shakeri Yekta
- Department of Thematic Studies-Environmental Change, Linköping University, Linköping, Sweden.,Biogas Research Center, Linköping University, Linköping, Sweden
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37
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Ruiz-Sánchez J, Campanaro S, Guivernau M, Fernández B, Prenafeta-Boldú FX. Effect of ammonia on the active microbiome and metagenome from stable full-scale digesters. BIORESOURCE TECHNOLOGY 2018; 250:513-522. [PMID: 29197774 DOI: 10.1016/j.biortech.2017.11.068] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/11/2017] [Revised: 11/17/2017] [Accepted: 11/22/2017] [Indexed: 05/20/2023]
Abstract
Four full-scale anaerobic digesters with a long history of stable operation were characterized in terms of active microbiome and metagenome. Isotopic fractionation of biogas demonstrated that acetotrophy was rather prevalent in reactors operated at <3 gTAN L-1 while hydrogenotrophy was predominant at >6 gTAN L-1, suggesting that syntrophic acetate oxidizing bacteria (SAOB) played a significant role in the latter. These results were generally coherent with the observed active bacterial and archaeal communities but no known SAOB were observed. Metagenome descriptions yielded 73 assembled population genomes, of which only 7 could be assigned at the species level. Gene annotation and association to relevant metabolic pathways indicated that the phyla Chloroflexi and Bacteroidales might encompass new, currently undescribed, SAOB/formate producing species that would metabolize acetate via the glycine cleavage system. The predominant hydrogenotrophic counterpart at a high ammonia content belonged to the genus Methanoculleus, which could also grow on acetate to a certain extent.
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Affiliation(s)
- J Ruiz-Sánchez
- GIRO Joint Research Unit IRTA-UPC, IRTA Torre Marimon, 08140 Caldes de Montbui (Barcelona), Catalonia, Spain.
| | - S Campanaro
- Department of Biology, University of Padua, Via U.Bassi 58/b 35121, Padua, Italy
| | - M Guivernau
- GIRO Joint Research Unit IRTA-UPC, IRTA Torre Marimon, 08140 Caldes de Montbui (Barcelona), Catalonia, Spain
| | - B Fernández
- GIRO Joint Research Unit IRTA-UPC, IRTA Torre Marimon, 08140 Caldes de Montbui (Barcelona), Catalonia, Spain
| | - F X Prenafeta-Boldú
- GIRO Joint Research Unit IRTA-UPC, IRTA Torre Marimon, 08140 Caldes de Montbui (Barcelona), Catalonia, Spain
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Campanaro S, Treu L, Kougias PG, Zhu X, Angelidaki I. Taxonomy of anaerobic digestion microbiome reveals biases associated with the applied high throughput sequencing strategies. Sci Rep 2018; 8:1926. [PMID: 29386622 PMCID: PMC5792648 DOI: 10.1038/s41598-018-20414-0] [Citation(s) in RCA: 42] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/06/2017] [Accepted: 01/17/2018] [Indexed: 11/20/2022] Open
Abstract
In the past few years, many studies investigated the anaerobic digestion microbiome by means of 16S rRNA amplicon sequencing. Results obtained from these studies were compared to each other without taking into consideration the followed procedure for amplicons preparation and data analysis. This negligence was mainly due to the lack of knowledge regarding the biases influencing specific steps of the microbiome investigation process. In the present study, the main technical aspects of the 16S rRNA analysis were checked giving special attention to the approach used for high throughput sequencing. More specifically, the microbial compositions of three laboratory scale biogas reactors were analyzed before and after addition of sodium oleate by sequencing the microbiome with three different approaches: 16S rRNA amplicon sequencing, shotgun DNA and shotgun RNA. This comparative analysis revealed that, in amplicon sequencing, abundance of some taxa (Euryarchaeota and Spirochaetes) was biased by the inefficiency of universal primers to hybridize all the templates. Reliability of the results obtained was also influenced by the number of hypervariable regions under investigation. Finally, amplicon sequencing and shotgun DNA underestimated the Methanoculleus genus, probably due to the low 16S rRNA gene copy number encoded in this taxon.
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Affiliation(s)
- Stefano Campanaro
- Department of Biology, University of Padova, Via U. Bassi 58/b, 35121, Padova, Italy
| | - Laura Treu
- Department of Environmental Engineering, Technical University of Denmark, 2800, Kgs, Lyngby, Denmark.
| | - Panagiotis G Kougias
- Department of Environmental Engineering, Technical University of Denmark, 2800, Kgs, Lyngby, Denmark
| | - Xinyu Zhu
- Department of Environmental Engineering, Technical University of Denmark, 2800, Kgs, Lyngby, Denmark
| | - Irini Angelidaki
- Department of Environmental Engineering, Technical University of Denmark, 2800, Kgs, Lyngby, Denmark
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Grohmann A, Fehrmann S, Vainshtein Y, Haag NL, Wiese F, Stevens P, Naegele HJ, Oechsner H, Hartsch T, Sohn K, Grumaz C. Microbiome dynamics and adaptation of expression signatures during methane production failure and process recovery. BIORESOURCE TECHNOLOGY 2018; 247:347-356. [PMID: 28954247 DOI: 10.1016/j.biortech.2017.08.214] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/07/2017] [Revised: 08/30/2017] [Accepted: 08/31/2017] [Indexed: 06/07/2023]
Abstract
This study aimed to uncover microbial dynamics and transcriptional adaptations during mesophilic AD of maize silage and slurry. While one digester performed under optimal conditions, the investigations also evaluated the microbiome during a temperature drop mediated process failure accompanied by acidification and how it contributed to a process recovery. Composition and pathway activities were analyzed by whole genome shotgun (WGS) and metatranscriptome sequencing, respectively. A biodiversity of 112 species was observed with noticeable shifts over process time. Although four distinct groups of microbes could be identified with a correlating versatility according to substrate and to process disturbance, also tremendous effects on gene expression were monitored especially of the archaeal methane metabolism. Particularly, the expression of acetogenotrophic methanogenesis related genes was identified to be relevant for process regeneration.
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Affiliation(s)
- Anja Grohmann
- University of Stuttgart IGVP, Pfaffenwaldring 31, 70569 Stuttgart, Germany
| | | | | | - Nicola L Haag
- University of Hohenheim, State Institute of Agricultural Engineering and Bioenergy, Garbenstrasse 9, 70599 Stuttgart, Germany
| | | | - Philip Stevens
- Fraunhofer IGB, Nobelstrasse 12, 70569 Stuttgart, Germany
| | - Hans-Joachim Naegele
- University of Hohenheim, State Institute of Agricultural Engineering and Bioenergy, Garbenstrasse 9, 70599 Stuttgart, Germany
| | - Hans Oechsner
- University of Hohenheim, State Institute of Agricultural Engineering and Bioenergy, Garbenstrasse 9, 70599 Stuttgart, Germany
| | - Thomas Hartsch
- Genedata GmbH, Fürstenrieder Strasse 281, 81377 Munich, Germany
| | - Kai Sohn
- Fraunhofer IGB, Nobelstrasse 12, 70569 Stuttgart, Germany
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40
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Jia Y, Ng SK, Lu H, Cai M, Lee PKH. Genome-centric metatranscriptomes and ecological roles of the active microbial populations during cellulosic biomass anaerobic digestion. BIOTECHNOLOGY FOR BIOFUELS 2018; 11:117. [PMID: 29713376 PMCID: PMC5911951 DOI: 10.1186/s13068-018-1121-0] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/29/2018] [Accepted: 04/16/2018] [Indexed: 05/13/2023]
Abstract
BACKGROUND Although anaerobic digestion for biogas production is used worldwide in treatment processes to recover energy from carbon-rich waste such as cellulosic biomass, the activities and interactions among the microbial populations that perform anaerobic digestion deserve further investigations, especially at the population genome level. To understand the cellulosic biomass-degrading potentials in two full-scale digesters, this study examined five methanogenic enrichment cultures derived from the digesters that anaerobically digested cellulose or xylan for more than 2 years under 35 or 55 °C conditions. RESULTS Metagenomics and metatranscriptomics were used to capture the active microbial populations in each enrichment culture and reconstruct their meta-metabolic network and ecological roles. 107 population genomes were reconstructed from the five enrichment cultures using a differential coverage binning approach, of which only a subset was highly transcribed in the metatranscriptomes. Phylogenetic and functional convergence of communities by enrichment condition and phase of fermentation was observed for the highly transcribed populations in the metatranscriptomes. In the 35 °C cultures grown on cellulose, Clostridium cellulolyticum-related and Ruminococcus-related bacteria were identified as major hydrolyzers and primary fermenters in the early growth phase, while Clostridium leptum-related bacteria were major secondary fermenters and potential fatty acid scavengers in the late growth phase. While the meta-metabolism and trophic roles of the cultures were similar, the bacterial populations performing each function were distinct between the enrichment conditions. CONCLUSIONS Overall, a population genome-centric view of the meta-metabolism and functional roles of key active players in anaerobic digestion of cellulosic biomass was obtained. This study represents a major step forward towards understanding the microbial functions and interactions at population genome level during the microbial conversion of lignocellulosic biomass to methane. The knowledge of this study can facilitate development of potential biomarkers and rational design of the microbiome in anaerobic digesters.
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Affiliation(s)
- Yangyang Jia
- B5423-AC1, School of Energy and Environment, City University of Hong Kong, Tat Chee Avenue, Kowloon, Hong Kong
| | - Siu-Kin Ng
- B5423-AC1, School of Energy and Environment, City University of Hong Kong, Tat Chee Avenue, Kowloon, Hong Kong
| | - Hongyuan Lu
- B5423-AC1, School of Energy and Environment, City University of Hong Kong, Tat Chee Avenue, Kowloon, Hong Kong
| | - Mingwei Cai
- B5423-AC1, School of Energy and Environment, City University of Hong Kong, Tat Chee Avenue, Kowloon, Hong Kong
| | - Patrick K. H. Lee
- B5423-AC1, School of Energy and Environment, City University of Hong Kong, Tat Chee Avenue, Kowloon, Hong Kong
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41
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Amha YM, Anwar MZ, Brower A, Jacobsen CS, Stadler LB, Webster TM, Smith AL. Inhibition of anaerobic digestion processes: Applications of molecular tools. BIORESOURCE TECHNOLOGY 2018; 247:999-1014. [PMID: 28918349 DOI: 10.1016/j.biortech.2017.08.210] [Citation(s) in RCA: 30] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/08/2017] [Revised: 08/30/2017] [Accepted: 08/31/2017] [Indexed: 05/25/2023]
Abstract
Inhibition of anaerobic digestion (AD) due to perturbation caused by substrate composition and/or operating conditions can significantly reduce performance. Such perturbations could be limited by elucidating microbial community response to inhibitors and devising strategies to increase community resilience. To this end, advanced molecular methods are increasingly being applied to study the AD microbiome, a diverse community of microbial populations with complex interactions. This literature review of AD inhibition studies indicates that inhibitory concentrations are highly variable, likely stemming from differences in community structure or activity profile and previous exposure to inhibitors. More recent molecular methods such as 'omics' tools, substrate mapping, and real-time sequencing are helping to unravel the complexity of AD inhibition by elucidating physiological and ecological significance of key microbial populations. The AD community must strive towards developing predictive abilities to avoid system failure (e.g., real-time tracking of an indicator species) to improve resilience of AD systems.
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Affiliation(s)
- Yamrot M Amha
- Astani Department of Civil and Environmental Engineering, University of Southern California, 3620 South Vermont Avenue, Los Angeles, CA 90089, USA
| | - Muhammad Zohaib Anwar
- mBioInform ApS, Ole Maaloes Vej 3, 2200 Copenhagen N, Denmark; Department of Environmental Sciences, Aarhus University, Frederiksborgvej, 399, 4000 Roskilde, Denmark
| | - Andrew Brower
- Department of Civil and Environmental Engineering, Rice University, 6100 Main Street, TX 77005, USA
| | - Carsten S Jacobsen
- mBioInform ApS, Ole Maaloes Vej 3, 2200 Copenhagen N, Denmark; Department of Environmental Sciences, Aarhus University, Frederiksborgvej, 399, 4000 Roskilde, Denmark
| | - Lauren B Stadler
- Department of Civil and Environmental Engineering, Rice University, 6100 Main Street, TX 77005, USA
| | - Tara M Webster
- Soil and Crop Sciences Section, Cornell University, 306 Tower Road, Ithaca, NY 14853, USA
| | - Adam L Smith
- Astani Department of Civil and Environmental Engineering, University of Southern California, 3620 South Vermont Avenue, Los Angeles, CA 90089, USA.
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High-Performance Biogas Upgrading Using a Biotrickling Filter and Hydrogenotrophic Methanogens. Appl Biochem Biotechnol 2017; 183:488-502. [DOI: 10.1007/s12010-017-2569-2] [Citation(s) in RCA: 34] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/07/2017] [Accepted: 07/24/2017] [Indexed: 10/19/2022]
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43
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Poszytek K, Pyzik A, Sobczak A, Lipinski L, Sklodowska A, Drewniak L. The effect of the source of microorganisms on adaptation of hydrolytic consortia dedicated to anaerobic digestion of maize silage. Anaerobe 2017; 46:46-55. [DOI: 10.1016/j.anaerobe.2017.02.011] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/18/2016] [Revised: 01/28/2017] [Accepted: 02/14/2017] [Indexed: 12/26/2022]
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de Jonge N, Moset V, Møller HB, Nielsen JL. Microbial population dynamics in continuous anaerobic digester systems during start up, stable conditions and recovery after starvation. BIORESOURCE TECHNOLOGY 2017; 232:313-320. [PMID: 28242388 DOI: 10.1016/j.biortech.2017.02.036] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/09/2016] [Revised: 02/06/2017] [Accepted: 02/08/2017] [Indexed: 06/06/2023]
Abstract
The evolution and population dynamics of complex anaerobic microbial communities in anaerobic digesters were investigated during stable operation and recovery after prolonged starvation. Three thermophilic reactor systems fed with cattle manure were operated continuously in parallel for 167days. Significant changes in the microbial communities were observed for both the bacterial and archaeal populations as the reactor systems were subjected to changing feeding regimes. The ecosystems developed from being relatively similar in structure to more specialised communities, with large population shifts within the acetogenic and methanogenic communities, which appeared to shift towards the hydrogenotrophic methanogenesis pathway. All reactor systems showed signs of adaptation to a harsher environment under high VFA, H2S and ammonia concentrations, but remained at a lower degree of stability after 45days of recovery compared to stable period of operation before starvation.
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Affiliation(s)
- Nadieh de Jonge
- Department of Chemistry and Bioscience, Aalborg University, Fredrik Bajers Vej 7H, 9220 Aalborg, Denmark
| | - Veronica Moset
- Department of Engineering, Aarhus University, Blichers Allé 20, 8830 Tjele, Denmark
| | - Henrik Bjarne Møller
- Department of Engineering, Aarhus University, Blichers Allé 20, 8830 Tjele, Denmark
| | - Jeppe Lund Nielsen
- Department of Chemistry and Bioscience, Aalborg University, Fredrik Bajers Vej 7H, 9220 Aalborg, Denmark.
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45
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Campanaro S, Treu L, Cattani M, Kougias PG, Vendramin V, Schiavon S, Tagliapietra F, Giacomini A, Corich V. In vitro fermentation of key dietary compounds with rumen fluid: A genome-centric perspective. THE SCIENCE OF THE TOTAL ENVIRONMENT 2017; 584-585:683-691. [PMID: 28131445 DOI: 10.1016/j.scitotenv.2017.01.096] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/04/2016] [Revised: 01/11/2017] [Accepted: 01/15/2017] [Indexed: 06/06/2023]
Abstract
The anaerobic decomposition of organic substrates leads to the generation of gases, such as methane, which can either be a valuable energy carrier in industrial applications or can be considered as a main greenhouse gas when it is naturally emitted. In this study we investigated in vitro the effect of dietary compounds, such as starch and proteins, on the microbial community present in the rumen fluid. High throughput shotgun sequencing, followed by metagenomic assembly and binning allowed the extraction of 18 genome bins. A composite bioinformatic analysis led to the prediction of metabolic pathways involved in the degradation of dietary compounds and in the biosynthesis of crucial products like propionate, methane and ammonia. The identification of genomes belonging to poorly characterized phyla such as Thermoplasmata and Elusimicrobia shed light on their putative role. The high abundance of methylotrophic archaea in the inoculum suggests a relevant role in methane production.
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Affiliation(s)
- Stefano Campanaro
- Department of Biology, University of Padova, Via U. Bassi 58/b, Padova 35121, Italy.
| | - Laura Treu
- Department of Agronomy, Food, Natural Resources, Animals and the Environment (DAFNAE), University of Padova, Viale dell'Università 16, Legnaro, PD 35020, Italy; Department of Environmental Engineering, Technical University of Denmark, Kongens Lyngby, Denmark
| | - Mirko Cattani
- Department of Comparative Biomedicine and Food Science (BCA), University of Padova, Viale dell'Università 16, Legnaro, PD 35020, Italy
| | - Panagiotis G Kougias
- Department of Environmental Engineering, Technical University of Denmark, Kongens Lyngby, Denmark
| | - Veronica Vendramin
- Department of Agronomy, Food, Natural Resources, Animals and the Environment (DAFNAE), University of Padova, Viale dell'Università 16, Legnaro, PD 35020, Italy
| | - Stefano Schiavon
- Department of Agronomy, Food, Natural Resources, Animals and the Environment (DAFNAE), University of Padova, Viale dell'Università 16, Legnaro, PD 35020, Italy
| | - Franco Tagliapietra
- Department of Agronomy, Food, Natural Resources, Animals and the Environment (DAFNAE), University of Padova, Viale dell'Università 16, Legnaro, PD 35020, Italy
| | - Alessio Giacomini
- Department of Agronomy, Food, Natural Resources, Animals and the Environment (DAFNAE), University of Padova, Viale dell'Università 16, Legnaro, PD 35020, Italy
| | - Viviana Corich
- Department of Agronomy, Food, Natural Resources, Animals and the Environment (DAFNAE), University of Padova, Viale dell'Università 16, Legnaro, PD 35020, Italy
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46
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Mahdy A, Fotidis IA, Mancini E, Ballesteros M, González-Fernández C, Angelidaki I. Ammonia tolerant inocula provide a good base for anaerobic digestion of microalgae in third generation biogas process. BIORESOURCE TECHNOLOGY 2017; 225:272-278. [PMID: 27898317 DOI: 10.1016/j.biortech.2016.11.086] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/14/2016] [Revised: 11/20/2016] [Accepted: 11/21/2016] [Indexed: 06/06/2023]
Abstract
This study investigated the ability of an ammonia-acclimatized inoculum to digest efficiently protein-rich microalgae for continuous 3rd generation biogas production. Moreover, we investigated whether increased C/N ratio could alleviate ammonia toxicity. The biochemical methane potential (BMP) of five different algae (Chlorella vulgaris)/manure (cattle) mixtures showed that the mixture of 80/20 (on VS basis) resulted in the highest BMP value (431mLCH4 gVS-1), while the BMP of microalgae alone (100/0) was 415mLCH4 gVS-1. Subsequently, anaerobic digestion of those two substrates was tested in continuous stirred tank reactors (CSTR). Despite of the high ammonium levels (3.7-4.2g NH4+-NL-1), CSTR reactors using ammonia tolerant inoculum resulted in relatively high methane yields (i.e. 77.5% and 84% of the maximum expected, respectively). These results demonstrated that ammonia tolerant inocula could be a promising approach to successfully digest protein-rich microalgae and achieve a 3rd generation biogas production.
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Affiliation(s)
- Ahmed Mahdy
- Biotechnological Processes for Energy Production Unit - IMDEA Energy, 28935 Móstoles, Madrid, Spain; Department of Agricultural Microbiology, Faculty of Agriculture, Zagazig University, 44511 Zagazig, Egypt
| | - Ioannis A Fotidis
- Department of Environmental Engineering, Technical University of Denmark, Bygningstorvet Bygning 115, DK-2800 Kgs. Lyngby, Denmark.
| | - Enrico Mancini
- Department of Environmental Engineering, Technical University of Denmark, Bygningstorvet Bygning 115, DK-2800 Kgs. Lyngby, Denmark
| | - Mercedes Ballesteros
- Biotechnological Processes for Energy Production Unit - IMDEA Energy, 28935 Móstoles, Madrid, Spain; Biofuels Unit - Research Center for Energy, Environment and Technology (CIEMAT), 28040 Madrid, Spain
| | | | - Irini Angelidaki
- Department of Environmental Engineering, Technical University of Denmark, Bygningstorvet Bygning 115, DK-2800 Kgs. Lyngby, Denmark
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47
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Bohn J, Yüksel-Dadak A, Dröge S, König H. Isolation of lactic acid-forming bacteria from biogas plants. J Biotechnol 2016; 244:4-15. [PMID: 28011128 DOI: 10.1016/j.jbiotec.2016.12.015] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/07/2016] [Revised: 12/14/2016] [Accepted: 12/19/2016] [Indexed: 01/12/2023]
Abstract
Direct molecular approaches provide hints that lactic acid bacteria play an important role in the degradation process of organic material to methanogenetic substrates in biogas plants. However, their diversity in biogas fermenter samples has not been analyzed in detail yet. For that reason, five different biogas fermenters, which were fed mainly with maize silage and manure from cattle or pigs, were examined for the occurrence of lactic acid-forming bacteria. A total of 197 lactic acid-forming bacterial strains were isolated, which we assigned to 21 species, belonging to the genera Bacillus, Clostridium, Lactobacillus, Pediococcus, Streptococcus and Pseudoramibacter-related. A qualitative multiplex system and a real-time quantitative PCR could be developed for most isolates, realized by the selection of specific primers. Their role in biogas plants was discussed on the basis of the quantitative results and on physiological data of the isolates.
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Affiliation(s)
- Jelena Bohn
- Institute of Microbiology and Wine Research (IMW), Johannes Gutenberg-Universität of Mainz, Johann-Joachim-Becherweg 15, 55099 Mainz, Germany.
| | - Aytül Yüksel-Dadak
- Institute of Microbiology and Wine Research (IMW), Johannes Gutenberg-Universität of Mainz, Johann-Joachim-Becherweg 15, 55099 Mainz, Germany
| | - Stefan Dröge
- Test and Research Institute Pirmasens (PFI), Marie-Curie-Straße 19, 66953 Pirmasens, Germany
| | - Helmut König
- Institute of Microbiology and Wine Research (IMW), Johannes Gutenberg-Universität of Mainz, Johann-Joachim-Becherweg 15, 55099 Mainz, Germany
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48
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Zhu X, Kougias PG, Treu L, Campanaro S, Angelidaki I. Microbial community changes in methanogenic granules during the transition from mesophilic to thermophilic conditions. Appl Microbiol Biotechnol 2016; 101:1313-1322. [DOI: 10.1007/s00253-016-8028-0] [Citation(s) in RCA: 37] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/30/2016] [Revised: 11/14/2016] [Accepted: 11/22/2016] [Indexed: 10/20/2022]
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49
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Chen Y, Zhang F, Wang T, Shen N, Yu ZW, Zeng RJ. Hydraulic retention time affects stable acetate production from tofu processing wastewater in extreme-thermophilic (70°C) mixed culture fermentation. BIORESOURCE TECHNOLOGY 2016; 216:722-728. [PMID: 27295249 DOI: 10.1016/j.biortech.2016.06.015] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/02/2016] [Revised: 06/02/2016] [Accepted: 06/03/2016] [Indexed: 06/06/2023]
Abstract
Acetate is an important industrial chemical and its production from wastes via mixed culture fermentation (MCF) is economic. In this work, the effect of hydraulic retention time (HRT) on acetate production from tofu processing wastewater (TPW) in extreme-thermophilic (70°C) MCF was first investigated. It was found that long HRT (>3days) could lead to less acetate production while stable acetate production was achieved at short HRT (3days) with the yield of 0.57g-COD/g-CODTPW. The microbial community analysis showed that hydrogenotrophic methanogens (mainly Methanothermobacter) occupied up to 90% of archaea at both HRTs of 3 and 5days. However, Coprothermobacter, the main acetate-degraders, decreased from 35.74% to 10.58% of bacteria when HRT decreased from 5 to 3days, supporting the aggravation of syntrophic acetate oxidation in long HRT. This work demonstrated that HRT was a crucial factor to maintain stable acetate production from TPW in extreme-thermophilic MCF.
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Affiliation(s)
- Yun Chen
- CAS Key Laboratory of Urban Pollutant Conversion, Department of Chemistry, University of Science and Technology of China, Hefei, Anhui 230026, People's Republic of China
| | - Fang Zhang
- Hebei Key Laboratory of Applied Chemistry, School of Environmental and Chemical Engineering, Yanshan University, Qinhuangdao, Hebei 066004, People's Republic of China
| | - Ting Wang
- CAS Key Laboratory of Urban Pollutant Conversion, Department of Chemistry, University of Science and Technology of China, Hefei, Anhui 230026, People's Republic of China
| | - Nan Shen
- School of Environmental Engineering and Science, Yangzhou University, 196 West Huayang Road, Yangzhou, Jiangsu 225127, People's Republic of China
| | - Zhong-Wei Yu
- CAS Key Laboratory of Urban Pollutant Conversion, Department of Chemistry, University of Science and Technology of China, Hefei, Anhui 230026, People's Republic of China
| | - Raymond J Zeng
- CAS Key Laboratory of Urban Pollutant Conversion, Department of Chemistry, University of Science and Technology of China, Hefei, Anhui 230026, People's Republic of China.
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50
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Treu L, Kougias PG, Campanaro S, Bassani I, Angelidaki I. Deeper insight into the structure of the anaerobic digestion microbial community; the biogas microbiome database is expanded with 157 new genomes. BIORESOURCE TECHNOLOGY 2016; 216:260-6. [PMID: 27243603 DOI: 10.1016/j.biortech.2016.05.081] [Citation(s) in RCA: 76] [Impact Index Per Article: 9.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/07/2016] [Revised: 05/02/2016] [Accepted: 05/06/2016] [Indexed: 05/26/2023]
Abstract
This research aimed to better characterize the biogas microbiome by means of high throughput metagenomic sequencing and to elucidate the core microbial consortium existing in biogas reactors independently from the operational conditions. Assembly of shotgun reads followed by an established binning strategy resulted in the highest, up to now, extraction of microbial genomes involved in biogas producing systems. From the 236 extracted genome bins, it was remarkably found that the vast majority of them could only be characterized at high taxonomic levels. This result confirms that the biogas microbiome is comprised by a consortium of unknown species. A comparative analysis between the genome bins of the current study and those extracted from a previous metagenomic assembly demonstrated a similar phylogenetic distribution of the main taxa. Finally, this analysis led to the identification of a subset of common microbes that could be considered as the core essential group in biogas production.
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Affiliation(s)
- Laura Treu
- Department of Environmental Engineering, Technical University of Denmark, Kgs. Lyngby DK-2800, Denmark
| | - Panagiotis G Kougias
- Department of Environmental Engineering, Technical University of Denmark, Kgs. Lyngby DK-2800, Denmark.
| | - Stefano Campanaro
- Department of Biology, University of Padua, Via U. Bassi 58/b, 35121 Padova, Italy
| | - Ilaria Bassani
- Department of Environmental Engineering, Technical University of Denmark, Kgs. Lyngby DK-2800, Denmark
| | - Irini Angelidaki
- Department of Environmental Engineering, Technical University of Denmark, Kgs. Lyngby DK-2800, Denmark
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