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Baruah A, Newar R, Das S, Kalita N, Nath M, Ghosh P, Chinnam S, Sarma H, Narayan M. Biomedical applications of graphene-based nanomaterials: recent progress, challenges, and prospects in highly sensitive biosensors. DISCOVER NANO 2024; 19:103. [PMID: 38884869 PMCID: PMC11183028 DOI: 10.1186/s11671-024-04032-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/21/2024] [Accepted: 05/14/2024] [Indexed: 06/18/2024]
Abstract
Graphene-based nanomaterials (graphene, graphene oxide, reduced graphene oxide, graphene quantum dots, graphene-based nanocomposites, etc.) are emerging as an extremely important class of nanomaterials primarily because of their unique and advantageous physical, chemical, biological, and optoelectronic aspects. These features have resulted in uses across diverse areas of scientific research. Among all other applications, they are found to be particularly useful in designing highly sensitive biosensors. Numerous studies have established their efficacy in sensing pathogens and other biomolecules allowing for the rapid diagnosis of various diseases. Considering the growing importance and popularity of graphene-based materials for biosensing applications, this review aims to provide the readers with a summary of the recent progress in the concerned domain and highlights the challenges associated with the synthesis and application of these multifunctional materials.
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Affiliation(s)
- Arabinda Baruah
- Department of Chemistry, Gauhati University, Guwahati, Assam, 781014, India
| | - Rachita Newar
- Department of Chemistry, Gauhati University, Guwahati, Assam, 781014, India
| | - Saikat Das
- Department of Chemistry, Gauhati University, Guwahati, Assam, 781014, India
| | - Nitul Kalita
- Indian Institute of Technology Guwahati, Guwahati, Assam, 781039, India
| | - Masood Nath
- University of Technology and Applied Sciences, Muscat, Oman
| | - Priya Ghosh
- Department of Chemistry, Gauhati University, Guwahati, Assam, 781014, India
| | - Sampath Chinnam
- Department of Chemistry, M.S. Ramaiah Institute of Technology (Autonomous Institution, Affiliated to Visvesvaraya Technological University, Belgaum), Bengaluru, Karnataka, 560054, India
| | - Hemen Sarma
- Department of Botany, Bodoland University, Rangalikhata, Deborgaon, Kokrajhar (BTR), Assam, 783370, India.
| | - Mahesh Narayan
- Department of Chemistry and Biochemistry, University of Texas at El Paso, UTEP, 500 W. University Ave, El Paso, TX, 79968, USA.
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Shang Y, Wang J, Xia H, Jiao C, Javaid N, Liu X, Li J, Zeng J. A highly sensitive point-of-care detection platform for Salmonella typhimurium by integrating magnetic enrichment and fluorescent CsPbBr 3@SiO 2. Mikrochim Acta 2024; 191:303. [PMID: 38709340 DOI: 10.1007/s00604-024-06361-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/16/2024] [Accepted: 04/09/2024] [Indexed: 05/07/2024]
Abstract
A platform was designed based on Fe3O4 and CsPbBr3@SiO2 for integrated magnetic enrichment-fluorescence detection of Salmonella typhimurium, which significantly simplifies the detection process and enhances the working efficiency. Fe3O4 served as a magnetic enrichment unit for the capture of S. typhimurium. CsPbBr3@SiO2 was employed as a fluorescence-sensing unit for quantitative signal output, where SiO2 was introduced to strengthen the stability of CsPbBr3, improve its biomodificability, and prevent lead leakage. More importantly, the SiO2 shell shows neglectable absorption or scattering towards fluorescence, making the CsPbBr3@SiO2 exhibit a high quantum yield of 74.4%. After magnetic enrichment, the decreasing rate of the fluorescence emission intensity of the CsPbBr3@SiO2 supernatant at 527 nm under excitation light at UV 365 nm showed a strong linear correlation with S. typhimurium concentration of 1 × 102~1 × 108 CFU∙mL-1, and the limit of detection (LOD) reached 12.72 CFU∙mL-1. This platform has demonstrated outstanding stability, reproducibility, and resistance to interference, which provides an alternative for convenient and quantitative detection of S. typhimurium.
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Affiliation(s)
- Yanxue Shang
- College of Chemistry and Chemical Engineering, State Key Laboratory of Chemical Safety, China University of Petroleum (East China), Qingdao, 266580, China
| | - Jinling Wang
- College of Chemistry and Chemical Engineering, State Key Laboratory of Chemical Safety, China University of Petroleum (East China), Qingdao, 266580, China
| | - Hongkun Xia
- College of Chemistry and Chemical Engineering, State Key Laboratory of Chemical Safety, China University of Petroleum (East China), Qingdao, 266580, China
| | - Chunpeng Jiao
- College of Chemistry and Chemical Engineering, State Key Laboratory of Chemical Safety, China University of Petroleum (East China), Qingdao, 266580, China
| | - Nafisa Javaid
- Lahore College for Women University, Lahore, Pakistan
| | - Xiangyi Liu
- Department of Laboratory Medicine, Beijing Tongren Hospital, Capital Medical University, Beijing, 100730, China
| | - Jingwen Li
- College of Chemistry and Chemical Engineering, State Key Laboratory of Chemical Safety, China University of Petroleum (East China), Qingdao, 266580, China.
| | - Jingbin Zeng
- College of Chemistry and Chemical Engineering, State Key Laboratory of Chemical Safety, China University of Petroleum (East China), Qingdao, 266580, China.
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Mousavian Z, Fahimi-Kashani E, Nafisi V, Fahimi-Kashani N. Recent Advances in Development of Biosensors for Monitoring of Airborne Microorganisms. IRANIAN JOURNAL OF BIOTECHNOLOGY 2024; 22:e3722. [PMID: 39220332 PMCID: PMC11364924 DOI: 10.30498/ijb.2024.399314.3722] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 05/28/2023] [Accepted: 09/12/2023] [Indexed: 09/04/2024]
Abstract
Background The early detection of infectious microorganisms is crucial for preventing and controlling the transmission of diseases. This article provides a comprehensive review of biosensors based on various diagnostic methods for measuring airborne pathogens. Objective This article aims to explore recent advancements in the field of biosensors tailored for the detection and monitoring of airborne microorganisms, offering insights into emerging technologies and their potential applications in environmental surveillance and public health management. Materials and Methods The study summarizes the research conducted on novel methods of detecting airborne microorganisms using different biological sensors, as well as the application of signal amplification technologies such as polymerase chain reaction (PCR), immunoassay reactions, molecular imprinted polymers (MIP) technique, lectin and cascade reactions, and nanomaterials. Results Antibody and PCR detection methods are effective for specific microbial strains, but they have limitations including limited stability, high cost, and the need for skilled operators with basic knowledge of the target structure. Biosensors based on MIP and lectin offer a low-cost, stable, sensitive, and selective alternative to antibodies and PCR. However, challenges remain, such as the detection of small gas molecules by MIP and the lower sensitivity of lectins compared to antibodies. Additionally, achieving high sensitivity in complex environments poses difficulties for both methods. Conclusion The development of sensitive, reliable, accessible, portable, and inexpensive biosensors holds great potential for clinical and environmental applications, including disease diagnosis, treatment monitoring, and point-of-care testing, offering a promising future in this field. This review presents an overview of biosensor detection principles, covering component identification, energy conversion principles, and signal amplification. Additionally, it summarizes the research and applications of biosensors in the detection of airborne microorganisms. The latest advancements and future trends in biosensor detection of airborne microorganisms are also analyzed.
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Affiliation(s)
- Zahra Mousavian
- Ph.D. Candidate, Department of Biotechnology, Iranian Research Organization for Science and Technology (IROST), Tehran, Iran
| | - Ensieh Fahimi-Kashani
- Bachelor student, Faculty of Basic Sciences, Malayer International University, Hamedan
| | - Vahidreza Nafisi
- Associate Professor, Department of Electrical Engineering and Information Technology, Iranian Research Organization for Science and Technology (IROST), Tehran, Iran
| | - Nafiseh Fahimi-Kashani
- Assistant Professor, Faculty of Chemistry, Isfahan University of Technology, Isfahan, Iran
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Krasley A, Li E, Galeana JM, Bulumulla C, Beyene AG, Demirer GS. Carbon Nanomaterial Fluorescent Probes and Their Biological Applications. Chem Rev 2024; 124:3085-3185. [PMID: 38478064 PMCID: PMC10979413 DOI: 10.1021/acs.chemrev.3c00581] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/16/2023] [Revised: 02/01/2024] [Accepted: 02/09/2024] [Indexed: 03/28/2024]
Abstract
Fluorescent carbon nanomaterials have broadly useful chemical and photophysical attributes that are conducive to applications in biology. In this review, we focus on materials whose photophysics allow for the use of these materials in biomedical and environmental applications, with emphasis on imaging, biosensing, and cargo delivery. The review focuses primarily on graphitic carbon nanomaterials including graphene and its derivatives, carbon nanotubes, as well as carbon dots and carbon nanohoops. Recent advances in and future prospects of these fields are discussed at depth, and where appropriate, references to reviews pertaining to older literature are provided.
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Affiliation(s)
- Andrew
T. Krasley
- Janelia
Research Campus, Howard Hughes Medical Institute, 19700 Helix Drive, Ashburn, Virginia 20147, United States
| | - Eugene Li
- Division
of Chemistry and Chemical Engineering, California
Institute of Technology, 1200 E. California Boulevard, Pasadena, California 91125, United States
| | - Jesus M. Galeana
- Division
of Chemistry and Chemical Engineering, California
Institute of Technology, 1200 E. California Boulevard, Pasadena, California 91125, United States
| | - Chandima Bulumulla
- Janelia
Research Campus, Howard Hughes Medical Institute, 19700 Helix Drive, Ashburn, Virginia 20147, United States
| | - Abraham G. Beyene
- Janelia
Research Campus, Howard Hughes Medical Institute, 19700 Helix Drive, Ashburn, Virginia 20147, United States
| | - Gozde S. Demirer
- Division
of Chemistry and Chemical Engineering, California
Institute of Technology, 1200 E. California Boulevard, Pasadena, California 91125, United States
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Saberi Riseh R, Hassanisaadi M, Vatankhah M, Varma RS, Thakur VK. Nano/Micro-Structural Supramolecular Biopolymers: Innovative Networks with the Boundless Potential in Sustainable Agriculture. NANO-MICRO LETTERS 2024; 16:147. [PMID: 38457088 PMCID: PMC10923760 DOI: 10.1007/s40820-024-01348-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/03/2023] [Accepted: 01/09/2024] [Indexed: 03/09/2024]
Abstract
Sustainable agriculture plays a crucial role in meeting the growing global demand for food while minimizing adverse environmental impacts from the overuse of synthetic pesticides and conventional fertilizers. In this context, renewable biopolymers being more sustainable offer a viable solution to improve agricultural sustainability and production. Nano/micro-structural supramolecular biopolymers are among these innovative biopolymers that are much sought after for their unique features. These biomaterials have complex hierarchical structures, great stability, adjustable mechanical strength, stimuli-responsiveness, and self-healing attributes. Functional molecules may be added to their flexible structure, for enabling novel agricultural uses. This overview scrutinizes how nano/micro-structural supramolecular biopolymers may radically alter farming practices and solve lingering problems in agricultural sector namely improve agricultural production, soil health, and resource efficiency. Controlled bioactive ingredient released from biopolymers allows the tailored administration of agrochemicals, bioactive agents, and biostimulators as they enhance nutrient absorption, moisture retention, and root growth. Nano/micro-structural supramolecular biopolymers may protect crops by appending antimicrobials and biosensing entities while their eco-friendliness supports sustainable agriculture. Despite their potential, further studies are warranted to understand and optimize their usage in agricultural domain. This effort seeks to bridge the knowledge gap by investigating their applications, challenges, and future prospects in the agricultural sector. Through experimental investigations and theoretical modeling, this overview aims to provide valuable insights into the practical implementation and optimization of supramolecular biopolymers in sustainable agriculture, ultimately contributing to the development of innovative and eco-friendly solutions to enhance agricultural productivity while minimizing environmental impact.
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Affiliation(s)
- Roohallah Saberi Riseh
- Department of Plant Protection, Faculty of Agriculture, Vali-e-Asr University of Rafsanjan, Imam Khomeini Square, Rafsanjan, 7718897111, Iran.
| | - Mohadeseh Hassanisaadi
- Department of Plant Protection, Faculty of Agriculture, Vali-e-Asr University of Rafsanjan, Imam Khomeini Square, Rafsanjan, 7718897111, Iran
| | - Masoumeh Vatankhah
- Department of Plant Protection, Faculty of Agriculture, Vali-e-Asr University of Rafsanjan, Imam Khomeini Square, Rafsanjan, 7718897111, Iran
| | - Rajender S Varma
- Centre of Excellence for Research in Sustainable Chemistry, Department of Chemistry, Federal University of São Carlos, São Carlos, SP, 13565-905, Brazil.
| | - Vijay Kumar Thakur
- Biorefining and Advanced Materials Research Center, Scotland's Rural Collage (SRUC), Edinburgh, EH9 3JG, UK.
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Kumari M, Gupta V, Kumar N, Arun RK. Microfluidics-Based Nanobiosensors for Healthcare Monitoring. Mol Biotechnol 2024; 66:378-401. [PMID: 37166577 PMCID: PMC10173227 DOI: 10.1007/s12033-023-00760-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/21/2021] [Accepted: 04/22/2023] [Indexed: 05/12/2023]
Abstract
Efficient healthcare management demands prompt decision-making based on fast diagnostics tools, astute data analysis, and informatics analysis. The rapid detection of analytes at the point of care is ensured using microfluidics in synergy with nanotechnology and biotechnology. The nanobiosensors use nanotechnology for testing, rapid disease diagnosis, monitoring, and management. In essence, nanobiosensors detect biomolecules through bioreceptors by modulating the physicochemical signals generating an optical and electrical signal as an outcome of the binding of a biomolecule with the help of a transducer. The nanobiosensors are sensitive and selective and play a significant role in the early identification of diseases. This article reviews the detection method used with the microfluidics platform for nanobiosensors and illustrates the benefits of combining microfluidics and nanobiosensing techniques by various examples. The fundamental aspects, and their application are discussed to illustrate the advancement in the development of microfluidics-based nanobiosensors and the current trends of these nano-sized sensors for point-of-care diagnosis of various diseases and their function in healthcare monitoring.
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Affiliation(s)
- Monika Kumari
- Department of Chemical Engineering, Indian Institute of Technology, NH-44, Jagti, PO Nagrota, Jammu, Jammu & Kashmir, 181221, India
| | - Verruchi Gupta
- School of Biotechnology, Shri Mata Vaishno Devi University, Kakryal, Katra, Jammu & Kashmir, 182320, India
| | - Natish Kumar
- Department of Chemical Engineering, Indian Institute of Technology, NH-44, Jagti, PO Nagrota, Jammu, Jammu & Kashmir, 181221, India
| | - Ravi Kumar Arun
- Department of Chemical Engineering, Indian Institute of Technology, NH-44, Jagti, PO Nagrota, Jammu, Jammu & Kashmir, 181221, India.
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Fang Y, Wang C, Wang Y, Hu J, Lai M, Liu P, Zhang H. Naked-eye detection of plant viral disease using polymerase chain reaction amplification and DNAzyme. ANALYTICAL METHODS : ADVANCING METHODS AND APPLICATIONS 2024; 16:1003-1011. [PMID: 38269430 DOI: 10.1039/d3ay01367g] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/26/2024]
Abstract
Plant viral diseases can seriously affect the yield and quality of crops. In this work, a convenient and highly sensitive biosensor for the visual detection of plant viral disease is proposed by the PCR-induced generation of DNAzyme. In the absence of nucleic acid for a target plant virus, the primers prohibited the production of G-quadruplex by forming a hairpin structure. However, PCR amplification occurred and generated a number of specific PCR products with free G-quadruplex sequences at both ends in the presence of the target cDNA. A catalytically active G-quadruplex DNAzyme was formed with the help of K+ and hemin, resulting in the formation of colored products visible to the naked eye and a strong absorbance by the addition of ABTS2- and H2O2. The absorbance and the logarithm of target cDNA concentrations showed a good linear relationship in the range of 10 fM-1.0 nM, with a linear regression equation of A = 0.1402 lg c + 0.3761 (c: fM) and a detection limit of 0.19 fM. This method was successfully applied to the analysis of emerging tobacco mosaic virus (TMV) infections in tobacco leaf samples collected in the field due to its flexibility and convenience, indicating a potential application for the early detection of plant viral disease.
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Affiliation(s)
- Yongwei Fang
- College of Tobacco Science, Henan Agricultural University, Zhengzhou, Henan 450002, China.
| | - Chuang Wang
- College of Tobacco Science, Henan Agricultural University, Zhengzhou, Henan 450002, China.
| | - Yuli Wang
- College of Tobacco Science, Henan Agricultural University, Zhengzhou, Henan 450002, China.
| | - Jiandong Hu
- College of Mechanical and Electrical Engineering, Henan Agricultural University, Zhengzhou, Henan 450002, China
- Henan International Joint Laboratory of Laser Technology in Agriculture Sciences, Zhengzhou, Henan 450002, China
| | - Miao Lai
- College of Tobacco Science, Henan Agricultural University, Zhengzhou, Henan 450002, China.
| | - Pengfei Liu
- College of Tobacco Science, Henan Agricultural University, Zhengzhou, Henan 450002, China.
| | - Hong Zhang
- College of Tobacco Science, Henan Agricultural University, Zhengzhou, Henan 450002, China.
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Ali M, Xu C, Nawaz S, Ahmed AE, Hina Q, Li K. Anti-Cryptosporidial Drug-Discovery Challenges and Existing Therapeutic Avenues: A "One-Health" Concern. Life (Basel) 2024; 14:80. [PMID: 38255695 PMCID: PMC10820218 DOI: 10.3390/life14010080] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/22/2023] [Revised: 12/20/2023] [Accepted: 12/28/2023] [Indexed: 01/24/2024] Open
Abstract
Cryptosporidiosis is the leading cause of life-threatening diarrheal infection, especially in infants. Oocysts contaminate the environment, and also, being a zoonotic disease, cryptosporidiosis is a threat to One Health. Nitazoxanide is the only FDA-approved drug, effective only in immunocompetent adults, and is not safe for infants. The absence of mitochondria and apicoplast, the presence of an electron-dense band (ED band), hindrances in its genetic and phenotypic manipulations, and its unique position inside the host cell are some challenges to the anti-cryptosporidial drug-discovery process. However, many compounds, including herbal products, have shown efficacy against Cryptosporidium during in vitro and in vivo trials. Still, the "drug of choice" against this protozoan parasite, especially in immunocompromised individuals and infants, has not yet been explored. The One-Health approach addresses this issue, focusing on the intersection of animal, human, and environmental health. The objective of this review is to provide knowledge about novel anti-cryptosporidial drug targets, available treatment options with associated limitations, and possible future shifts toward natural products to treat cryptosporidiosis. The current review is organized to address the treatment and prevention of cryptosporidiosis. An anti-cryptosporidial drug that is effective in immunocompromised individuals and infants is a necessity of our time.
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Affiliation(s)
- Munwar Ali
- Institute of Traditional Chinese Veterinary Medicine, College of Veterinary Medicine, Nanjing Agricultural University, Nanjing 210095, China; (M.A.); (C.X.)
- MOE Joint International Research Laboratory of Animal Health and Food Safety, College of Veterinary Medicine, Nanjing Agricultural University, Nanjing 210095, China
| | - Chang Xu
- Institute of Traditional Chinese Veterinary Medicine, College of Veterinary Medicine, Nanjing Agricultural University, Nanjing 210095, China; (M.A.); (C.X.)
- MOE Joint International Research Laboratory of Animal Health and Food Safety, College of Veterinary Medicine, Nanjing Agricultural University, Nanjing 210095, China
| | - Shah Nawaz
- College of Veterinary Medicine, Huazhong Agricultural University, Wuhan 430070, China;
| | - Ahmed Ezzat Ahmed
- Biology Department, College of Science, King Khalid University, Abha 61413, Saudi Arabia;
| | - Qazal Hina
- Department of Animal Nutrition, University of Veterinary and Animal Sciences, Lahore 54000, Pakistan;
| | - Kun Li
- Institute of Traditional Chinese Veterinary Medicine, College of Veterinary Medicine, Nanjing Agricultural University, Nanjing 210095, China; (M.A.); (C.X.)
- MOE Joint International Research Laboratory of Animal Health and Food Safety, College of Veterinary Medicine, Nanjing Agricultural University, Nanjing 210095, China
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Sundararajan N, Habeebsheriff HS, Dhanabalan K, Cong VH, Wong LS, Rajamani R, Dhar BK. Mitigating Global Challenges: Harnessing Green Synthesized Nanomaterials for Sustainable Crop Production Systems. GLOBAL CHALLENGES (HOBOKEN, NJ) 2024; 8:2300187. [PMID: 38223890 PMCID: PMC10784203 DOI: 10.1002/gch2.202300187] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/21/2023] [Revised: 12/07/2023] [Indexed: 01/16/2024]
Abstract
Green nanotechnology, an emerging field, offers economic and social benefits while minimizing environmental impact. Nanoparticles, pivotal in medicine, pharmaceuticals, and agriculture, are now sourced from green plants and microorganisms, overcoming limitations of chemically synthesized ones. In agriculture, these green-made nanoparticles find use in fertilizers, insecticides, pesticides, and fungicides. Nanofertilizers curtail mineral losses, bolster yields, and foster agricultural progress. Their biological production, preferred for environmental friendliness and high purity, is cost-effective and efficient. Biosensors aid early disease detection, ensuring food security and sustainable farming by reducing excessive pesticide use. This eco-friendly approach harnesses natural phytochemicals to boost crop productivity. This review highlights recent strides in green nanotechnology, showcasing how green-synthesized nanomaterials elevate crop quality, combat plant pathogens, and manage diseases and stress. These advancements pave the way for sustainable crop production systems in the future.
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Affiliation(s)
| | | | | | - Vo Huu Cong
- Faculty of Natural Resources and EnvironmentVietnam National University of AgricultureTrau QuyGia LamHanoi10766Vietnam
| | - Ling Shing Wong
- Faculty of Health and Life SciencesINTI International UniversityPersiaran Perdana BBNPutra NilaiNilaiNegeri Sembilan71800Malaysia
| | | | - Bablu Kumar Dhar
- Business Administration DivisionMahidol University International CollegeMohidol UniversitySalaaya73170Thailand
- Faculty of Business AdministrationDaffodil International UniversityDhaka1216Bangladesh
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Cappetta E, Del Regno C, Conte M, Castro-Hinojosa C, Del Sol-Fernández S, Vergata C, Buti M, Curcio R, Onder A, Mazzei P, Funicello N, De Pasquale S, Terzaghi M, Del Gaudio P, Leone A, Martinelli F, Moros M, Ambrosone A. An Integrated Multilevel Approach Unveils Complex Seed-Nanoparticle Interactions and Their Implications for Seed Priming. ACS NANO 2023; 17:22539-22552. [PMID: 37931310 DOI: 10.1021/acsnano.3c06172] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/08/2023]
Abstract
Nanotechnology has the potential to revolutionize agriculture with the introduction of engineered nanomaterials. However, their use is hindered by high cost, marginal knowledge of their interactions with plants, and unpredictable effects related to massive use in crop cultivation. Nanopriming is an innovative seed priming technology able to match economic, agronomic, and environmental needs in agriculture. The present study was focused on unveiling, by a multilevel integrated approach, undisclosed aspects of seed priming mediated by iron oxide magnetic nanoparticles in pepper seeds (Capsicum annuum), one of the most economically important crops worldwide. Inductively coupled plasma atomic emission mass spectrometry and scanning electron microscopy were used to quantify the MNP uptake and assess seed surface changes. Magnetic resonance imaging mapped the distribution of MNPs prevalently in the seed coat. The application of MNPs significantly enhanced the root and vegetative growth of pepper plants, whereas seed priming with equivalent Fe concentrations supplied as FeCl3 did not yield these positive effects. Finally, global gene expression by RNA-sequencing identified more than 2,200 differentially expressed genes, most of them involved in plant developmental processes and defense mechanisms. Collectively, these data provide evidence on the link between structural seed changes and an extensive transcriptional reprogramming, which boosts the plant growth and primes the embryo to cope with environmental challenges that might occur during the subsequent developmental and growth stages.
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Affiliation(s)
- Elisa Cappetta
- Department of Pharmacy, University of Salerno, Fisciano 84084, Italy
| | - Carmine Del Regno
- Department of Pharmacy, University of Salerno, Fisciano 84084, Italy
| | - Marisa Conte
- Department of Pharmacy, University of Salerno, Fisciano 84084, Italy
| | - Christian Castro-Hinojosa
- Instituto de Nanociencia y Materiales de Aragón, INMA (CSIC-Universidad de Zaragoza), Zaragoza 50009, Spain
| | - Susel Del Sol-Fernández
- Instituto de Nanociencia y Materiales de Aragón, INMA (CSIC-Universidad de Zaragoza), Zaragoza 50009, Spain
| | - Chiara Vergata
- Department of Biology, University of Florence, Sesto Fiorentino 50019, Italy
| | - Matteo Buti
- Department of Agriculture, Food, Environmental and Forestry Sciences (DAGRI), University of Florence, Firenze 50144, Italy
| | - Rossella Curcio
- Department of Pharmacy, University of Salerno, Fisciano 84084, Italy
| | - Anil Onder
- Department of Pharmacy, University of Salerno, Fisciano 84084, Italy
| | - Pierluigi Mazzei
- Department of Pharmacy, University of Salerno, Fisciano 84084, Italy
| | - Nicola Funicello
- Department of Physics 'E.R. Caianiello', University of Salerno, Fisciano 84084, Italy
| | - Salvatore De Pasquale
- Department of Physics 'E.R. Caianiello', University of Salerno, Fisciano 84084, Italy
| | - Mattia Terzaghi
- Department of Biosciences, Biotechnologies and Environment, University of Bari Aldo Moro, Bari 70121, Italy
| | | | - Antonietta Leone
- Department of Pharmacy, University of Salerno, Fisciano 84084, Italy
| | - Federico Martinelli
- Department of Biology, University of Florence, Sesto Fiorentino 50019, Italy
| | - Maria Moros
- Instituto de Nanociencia y Materiales de Aragón, INMA (CSIC-Universidad de Zaragoza), Zaragoza 50009, Spain
- Centro de Investigación Biomédica en Red de Bioingeniería, Biomateriales y Nanomedicina (CIBER-BBN), Madrid 28029, Spain
| | - Alfredo Ambrosone
- Department of Pharmacy, University of Salerno, Fisciano 84084, Italy
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Attaluri S, Dharavath R. Novel plant disease detection techniques-a brief review. Mol Biol Rep 2023; 50:9677-9690. [PMID: 37823933 DOI: 10.1007/s11033-023-08838-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/25/2023] [Accepted: 09/25/2023] [Indexed: 10/13/2023]
Abstract
Plant pathogens cause severe losses to agricultural yield worldwide. Tracking plant health and early disease detection is important to reduce the disease spread and thus economic loss. Though visual scouting has been practiced from former times, detection of asymptomatic disease conditions is difficult. So, DNA-based and serological methods gained importance in plant disease detection. The progress in advanced technologies challenges the development of rapid, non-invasive, and on-field detection techniques such as spectroscopy. This review highlights various direct and indirect ways of detecting plant diseases like Enzyme-linked immunosorbent assay, Lateral flow assays, Polymerase chain reaction, spectroscopic techniques and biosensors. Although these techniques are sensitive and pathogen-specific, they are more laborious and time-intensive. As a consequence, a lot of interest is gained in in-field adaptable point-of-care devices with artificial intelligence-assisted pathogen detection at an early stage. More recently computer-aided techniques like neural networks are gaining significance in plant disease detection by image processing. In addition, a concise report on the latest progress achieved in plant disease detection techniques is provided.
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Ren B, Wang Y, Chen H, Diao L, Wang J, Zhang S, Zhang Y, Zhang M, Yin R, Wang Y. A Portable Nucleic Acid Sensor Based on PCR for Simple, Rapid, and Sensitive Testing of Botrytis cinerea in Ginseng. PLANT DISEASE 2023; 107:3362-3369. [PMID: 37202217 DOI: 10.1094/pdis-08-22-1839-sr] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/20/2023]
Abstract
Botrytis cinerea is a ubiquitous pathogen that can infect at least 200 dicotyledonous plant species including many agriculturally and economically important crops. In Ginseng, the fungus may cause ginseng gray mold disease, causing great economic losses in the ginseng industry. Therefore, the early detection of B. cinerea in the process of ginseng production is necessary for the disease prevention and control of the pathogen's spread. In this study, a polymerase chain reaction-nucleic acid sensor (PCR-NAS) rapid detection technique was established, and it can be used for field detection of B. cinerea through antipollution design and portable integration. The present study showed that the sensitivity of PCR-NAS technology is 10 times higher than that of traditional PCR-electrophoresis, and there is no need for expensive detection equipment or professional technicians. The detection results of nucleic acid sensors can be read by the naked eye in under 3 min. Meanwhile, the technique has high specificity for the detection of B. cinerea. The testing of 50 field samples showed that the detection results of PCR-NAS were consistent with those of the real-time quantitative PCR (qPCR) method. The PCR-NAS technique established in this study can be used as a novel nucleic acid field detection technique, and it has a potential application in the field detection of B. cinerea to achieve early warning of the pathogen infection.
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Affiliation(s)
- Bairu Ren
- College of Life Science, Jilin Agricultural University, Research Center Ginseng Genetic Resources Development and Utilization, Changchun 130118, China
- College of Biological and Pharmaceutical Engineering, Jilin Agricultural Science and Technology University, Jilin 132101, Jilin, China
| | - Yi Wang
- College of Life Science, Jilin Agricultural University, Research Center Ginseng Genetic Resources Development and Utilization, Changchun 130118, China
| | - Huijie Chen
- College of Biological and Pharmaceutical Engineering, Jilin Agricultural Science and Technology University, Jilin 132101, Jilin, China
| | - Lei Diao
- College of Biological and Pharmaceutical Engineering, Jilin Agricultural Science and Technology University, Jilin 132101, Jilin, China
| | - Jiaxin Wang
- College of Biological and Pharmaceutical Engineering, Jilin Agricultural Science and Technology University, Jilin 132101, Jilin, China
- Jilin Agricultural University, Laboratory for Cultivation and Breeding of Medicinal Plants of National Administration of Traditional Chinese Medicine, Changchun 130118, China
| | - Shuoyuan Zhang
- College of Biological and Pharmaceutical Engineering, Jilin Agricultural Science and Technology University, Jilin 132101, Jilin, China
| | - Yongzhe Zhang
- College of Biological and Pharmaceutical Engineering, Jilin Agricultural Science and Technology University, Jilin 132101, Jilin, China
| | - Meiping Zhang
- College of Life Science, Jilin Agricultural University, Research Center Ginseng Genetic Resources Development and Utilization, Changchun 130118, China
| | - Rui Yin
- College of Biological and Pharmaceutical Engineering, Jilin Agricultural Science and Technology University, Jilin 132101, Jilin, China
| | - Yanfang Wang
- College of Life Science, Jilin Agricultural University, Research Center Ginseng Genetic Resources Development and Utilization, Changchun 130118, China
- Jilin Agricultural University, Laboratory for Cultivation and Breeding of Medicinal Plants of National Administration of Traditional Chinese Medicine, Changchun 130118, China
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Tserevelakis GJ, Theocharis A, Spyropoulou S, Trantas E, Goumas D, Ververidis F, Zacharakis G. Hybrid Autofluorescence and Optoacoustic Microscopy for the Label-Free, Early and Rapid Detection of Pathogenic Infections in Vegetative Tissues. J Imaging 2023; 9:176. [PMID: 37754940 PMCID: PMC10532063 DOI: 10.3390/jimaging9090176] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/22/2023] [Revised: 08/25/2023] [Accepted: 08/28/2023] [Indexed: 09/28/2023] Open
Abstract
Agriculture plays a pivotal role in food security and food security is challenged by pests and pathogens. Due to these challenges, the yields and quality of agricultural production are reduced and, in response, restrictions in the trade of plant products are applied. Governments have collaborated to establish robust phytosanitary measures, promote disease surveillance, and invest in research and development to mitigate the impact on food security. Classic as well as modernized tools for disease diagnosis and pathogen surveillance do exist, but most of these are time-consuming, laborious, or are less sensitive. To that end, we propose the innovative application of a hybrid imaging approach through the combination of confocal fluorescence and optoacoustic imaging microscopy. This has allowed us to non-destructively detect the physiological changes that occur in plant tissues as a result of a pathogen-induced interaction well before visual symptoms occur. When broccoli leaves were artificially infected with Xanthomonas campestris pv. campestris (Xcc), eventually causing an economically important bacterial disease, the induced optical absorption alterations could be detected at very early stages of infection. Therefore, this innovative microscopy approach was positively utilized to detect the disease caused by a plant pathogen, showing that it can also be employed to detect quarantine pathogens such as Xylella fastidiosa.
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Affiliation(s)
- George J. Tserevelakis
- Foundation for Research and Technology Hellas, Institute of Electronic Structure and Laser, N. Plastira 100, GR-70013 Heraklion, Crete, Greece; (G.J.T.); (S.S.)
| | - Andreas Theocharis
- Department of Agriculture, School of Agricultural Sciences, Hellenic Mediterranean University, Estavromenos, GR-71410 Heraklion, Crete, Greece; (A.T.); (E.T.); (D.G.)
| | - Stavroula Spyropoulou
- Foundation for Research and Technology Hellas, Institute of Electronic Structure and Laser, N. Plastira 100, GR-70013 Heraklion, Crete, Greece; (G.J.T.); (S.S.)
| | - Emmanouil Trantas
- Department of Agriculture, School of Agricultural Sciences, Hellenic Mediterranean University, Estavromenos, GR-71410 Heraklion, Crete, Greece; (A.T.); (E.T.); (D.G.)
- Institute of Agri-Food and Life Sciences, University Research Centre, Hellenic Mediterranean University, GR-71410 Heraklion, Crete, Greece
| | - Dimitrios Goumas
- Department of Agriculture, School of Agricultural Sciences, Hellenic Mediterranean University, Estavromenos, GR-71410 Heraklion, Crete, Greece; (A.T.); (E.T.); (D.G.)
- Institute of Agri-Food and Life Sciences, University Research Centre, Hellenic Mediterranean University, GR-71410 Heraklion, Crete, Greece
| | - Filippos Ververidis
- Department of Agriculture, School of Agricultural Sciences, Hellenic Mediterranean University, Estavromenos, GR-71410 Heraklion, Crete, Greece; (A.T.); (E.T.); (D.G.)
- Institute of Agri-Food and Life Sciences, University Research Centre, Hellenic Mediterranean University, GR-71410 Heraklion, Crete, Greece
| | - Giannis Zacharakis
- Foundation for Research and Technology Hellas, Institute of Electronic Structure and Laser, N. Plastira 100, GR-70013 Heraklion, Crete, Greece; (G.J.T.); (S.S.)
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14
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Venbrux M, Crauwels S, Rediers H. Current and emerging trends in techniques for plant pathogen detection. FRONTIERS IN PLANT SCIENCE 2023; 14:1120968. [PMID: 37223788 PMCID: PMC10200959 DOI: 10.3389/fpls.2023.1120968] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/10/2022] [Accepted: 03/21/2023] [Indexed: 05/25/2023]
Abstract
Plant pathogenic microorganisms cause substantial yield losses in several economically important crops, resulting in economic and social adversity. The spread of such plant pathogens and the emergence of new diseases is facilitated by human practices such as monoculture farming and global trade. Therefore, the early detection and identification of pathogens is of utmost importance to reduce the associated agricultural losses. In this review, techniques that are currently available to detect plant pathogens are discussed, including culture-based, PCR-based, sequencing-based, and immunology-based techniques. Their working principles are explained, followed by an overview of the main advantages and disadvantages, and examples of their use in plant pathogen detection. In addition to the more conventional and commonly used techniques, we also point to some recent evolutions in the field of plant pathogen detection. The potential use of point-of-care devices, including biosensors, have gained in popularity. These devices can provide fast analysis, are easy to use, and most importantly can be used for on-site diagnosis, allowing the farmers to take rapid disease management decisions.
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Affiliation(s)
- Marc Venbrux
- Centre of Microbial and Plant Genetics, Laboratory for Process Microbial Ecology and Bioinspirational Management (PME&BIM), Department of Microbial and Molecular Systems (M2S), KU Leuven, Leuven, Belgium
| | - Sam Crauwels
- Centre of Microbial and Plant Genetics, Laboratory for Process Microbial Ecology and Bioinspirational Management (PME&BIM), Department of Microbial and Molecular Systems (M2S), KU Leuven, Leuven, Belgium
- Leuven Plant Institute (LPI), KU Leuven, Leuven, Belgium
| | - Hans Rediers
- Centre of Microbial and Plant Genetics, Laboratory for Process Microbial Ecology and Bioinspirational Management (PME&BIM), Department of Microbial and Molecular Systems (M2S), KU Leuven, Leuven, Belgium
- Leuven Plant Institute (LPI), KU Leuven, Leuven, Belgium
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15
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Patel R, Vinchurkar M, Mohin Shaikh A, Patkar R, Adami A, Giacomozzi F, Ramesh R, Pramanick B, Lorenzelli L, Shojaei Baghini M. Part I: Non-faradaic electrochemical impedance-based DNA biosensor for detecting phytopathogen - Ralstonia solanacearum. Bioelectrochemistry 2023; 150:108370. [PMID: 36630871 DOI: 10.1016/j.bioelechem.2023.108370] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/19/2022] [Revised: 01/03/2023] [Accepted: 01/05/2023] [Indexed: 01/09/2023]
Abstract
Herein, we report for the first time the development of a label-free, non-faradaic, and highly sensitive DNA-based impedimetric sensor using micro-sized gold interdigitated electrodes (IDE) to detect a soil-borne agricultural pathogen Ralstonia solanacearum. A universal 30 oligomer single-stranded DNA (ssDNA) probe lpxC4 having specificity towards R. solanacearum is successfully immobilized on the surface of IDE along with mercaptohexanol. The electrochemical stability of the developed sensor surface is determined using open circuit potential measurements. The DNA probe immobilization protocol is validated using the changes configured on the surface of IDE by contact angle and ATR-FTIR analysis. The DNA target hybridization is detected using non-faradaic electrochemical impedance spectroscopy measurement with an ultra-low sample volume of 10 µL. The non-faradaic approach is verified by studying redox behavior using cyclic voltammetry. We investigate the hybridization of the surface-immobilized label-free probe with the complementary DNA targets obtained from infected eggplant saplings and cross-reactive studies with mismatched DNA strands. Our impedimetric sensor can detect target concentrations as low as 0.1 ng/µL. This standardization and detection of DNA hybridization serves as part I of the work and paves the way for further study in the detection of pathogenic field samples.
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Affiliation(s)
- Rhea Patel
- Center for Research in Nanotechnology and Science, Indian Institute of Technology Bombay, Mumbai 400076, India.
| | - Madhuri Vinchurkar
- Department of Electrical Engineering, Indian Institute of Technology Bombay, Mumbai 400076, India
| | - Aatha Mohin Shaikh
- Department of Electrical Engineering, Indian Institute of Technology Bombay, Mumbai 400076, India
| | - Rajul Patkar
- Department of Electrical Engineering, Indian Institute of Technology Bombay, Mumbai 400076, India
| | - Andrea Adami
- Center for Sensors & Devices, Fondazione Bruno Kessler (FBK), Trento, Italy
| | - Flavio Giacomozzi
- Center for Sensors & Devices, Fondazione Bruno Kessler (FBK), Trento, Italy
| | - Raman Ramesh
- Plant Pathology, ICAR - Central Coastal Agricultural Research Institute, Old Goa, Goa 403402, India
| | - Bidhan Pramanick
- School of Electrical Sciences and Centre of Excellence in Particulates Colloids and Interfaces, Indian Institute of Technology Goa, Goa 403401, India
| | - Leandro Lorenzelli
- Center for Sensors & Devices, Fondazione Bruno Kessler (FBK), Trento, Italy
| | - Maryam Shojaei Baghini
- Department of Electrical Engineering, Indian Institute of Technology Bombay, Mumbai 400076, India
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16
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Liu Y, Wang W, Feng X, Ji X, He Z. A functional nanoflower based lateral flow immunoassay for the rapid and robust detection of pathogens. Analyst 2023; 148:1246-1252. [PMID: 36806350 DOI: 10.1039/d3an00012e] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/12/2023]
Abstract
In the face of complex public health emergencies and various social medical needs in new situations, it is urgent to establish rapid detection technology for the early detection of pathogens to control their spread and minimize the resultant health and societal impact. Point-of-care testing (POCT) that allows rapid, on-site, and affordable detection and monitoring of health conditions at home or away from clinical labs has received increasing attention in modern medicine. In this work, we have synthesized multifunctional magainin I-human chorionic gonadotropin (hCG)-Cu3(PO4)2 nanoflowers and demonstrated a new strategy for the fast diagnosis of pathogenic microorganisms by combining functional nanoflowers with a lateral flow immunoassay device. The prepared multifunctional nanoflowers immobilized many signal molecules, which solves the poor sensitivity of traditional lateral flow strips and realizes the highly sensitive detection of pathogenic microorganisms ("accurate detection"). Besides, this method can complete the rapid transformation of commercial-off-the-shelf lateral flow strips and realize the fast diagnosis of target analytes in case of an outbreak ("fast detection"). Therefore, the established rapid and highly sensitive lateral flow immunoassay for the detection of pathogenic microorganisms will effectively improve the early diagnosis efficiency of infectious diseases caused by pathogenic microorganisms and shorten the diagnosis time of diseases.
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Affiliation(s)
- Yucheng Liu
- Core Facility of Wuhan University, Wuhan University, Wuhan 430072, China.
| | - Wang Wang
- Key Laboratory of Analytical Chemistry for Biology and Medicine (Ministry of Education), College of Chemistry and Molecular Sciences, Wuhan University, Wuhan 430072, China
| | - Xuesong Feng
- Core Facility of Wuhan University, Wuhan University, Wuhan 430072, China.
| | - Xinghu Ji
- Key Laboratory of Analytical Chemistry for Biology and Medicine (Ministry of Education), College of Chemistry and Molecular Sciences, Wuhan University, Wuhan 430072, China
| | - Zhike He
- Key Laboratory of Analytical Chemistry for Biology and Medicine (Ministry of Education), College of Chemistry and Molecular Sciences, Wuhan University, Wuhan 430072, China
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17
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Innovations in the synthesis of graphene nanostructures for bio and gas sensors. BIOMATERIALS ADVANCES 2023; 145:213234. [PMID: 36502548 DOI: 10.1016/j.bioadv.2022.213234] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/04/2022] [Revised: 11/11/2022] [Accepted: 11/30/2022] [Indexed: 12/12/2022]
Abstract
Sensors play a significant role in modern technologies and devices used in industries, hospitals, healthcare, nanotechnology, astronomy, and meteorology. Sensors based upon nanostructured materials have gained special attention due to their high sensitivity, precision accuracy, and feasibility. This review discusses the fabrication of graphene-based biosensors and gas sensors, which have highly efficient performance. Significant developments in the synthesis routes to fabricate graphene-based materials with improved structural and surface properties have boosted their utilization in sensing applications. The higher surface area, better conductivity, tunable structure, and atom-thick morphology of these hybrid materials have made them highly desirable for the fabrication of flexible and stable sensors. Many publications have reported various modification approaches to improve the selectivity of these materials. In the current work, a compact and informative review focusing on the most recent developments in graphene-based biosensors and gas sensors has been designed and delivered. The research community has provided a complete critical analysis of the most robust case studies from the latest fabrication routes to the most complex challenges. Some significant ideas and solutions have been proposed to overcome the limitations regarding the field of biosensors and hazardous gas sensors.
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18
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Ahmed FK, Alghuthaymi MA, Abd-Elsalam KA, Ravichandran M, Kalia A. Nano-Based Robotic Technologies for Plant Disease Diagnosis. NANOROBOTICS AND NANODIAGNOSTICS IN INTEGRATIVE BIOLOGY AND BIOMEDICINE 2023:327-359. [DOI: 10.1007/978-3-031-16084-4_14] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 09/01/2023]
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19
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Patel R, Mitra B, Vinchurkar M, Adami A, Patkar R, Giacomozzi F, Lorenzelli L, Baghini MS. Plant pathogenicity and associated/related detection systems. A review. Talanta 2023; 251:123808. [DOI: 10.1016/j.talanta.2022.123808] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/04/2022] [Revised: 07/27/2022] [Accepted: 08/01/2022] [Indexed: 11/24/2022]
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20
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Han Z, Yang C, Xiao D, Lin Y, Wen R, Chen B, He X. A Rapid, Fluorescence Switch-On Biosensor for Early Diagnosis of Sorghum Mosaic Virus. BIOSENSORS 2022; 12:1034. [PMID: 36421152 PMCID: PMC9688095 DOI: 10.3390/bios12111034] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/11/2022] [Revised: 11/09/2022] [Accepted: 11/14/2022] [Indexed: 06/16/2023]
Abstract
For the first time, a nanobiosensor was established for Sorghum mosaic virus (SrMV) detection. The biosensor consists of cadmium telluride quantum dots (CdTe QDs) conjugated to the specific antibody (Ab) against SrMV coat protein (CP) and carbon quantum dots (C QDs) labeled with SrMV coat protein. The formation of the fluorophore-quencher immunocomplex CdTe QDs-Ab+C QDs-CP led to a distinct decrease in the fluorescence intensity of CdTe QDs. Conversely, the emission intensity of CdTe QDs recovered upon the introduction of unlabeled CP. The developed biosensor showed a limit of detection of 44 nM in a linear range of 0.10-0.54 μM and exhibited the strongest fluorescence intensity (about 47,000 a.u.) at 552 nm. This strategy was applied to detect purified CP in plant sap successfully with a recovery rate between 93-103%. Moreover, the feasibility of the proposed method was further verified by the detection of field samples, and the results were consistent with an enzyme-linked immunosorbent assay (ELISA). Contrarily to ELISA, the proposed biosensor did not require excessive washing and incubation steps, thus the detection could be rapidly accomplished in a few minutes. The high sensitivity and short assay time of this designed biosensor demonstrated its potential application in situ and rapid detection. In addition, the fluorescence quenching of CdTe QDs was attributed to dynamic quenching according to the Stern-Volmer equation.
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Affiliation(s)
- Zhenlong Han
- School of Chemistry and Chemical Engineering, Guangxi University, Nanning 530004, China
| | - Congyuan Yang
- School of Chemistry and Chemical Engineering, Guangxi University, Nanning 530004, China
| | - Dan Xiao
- College of Life Science and Technology, Guangxi University, Nanning 530004, China
| | - Yinfu Lin
- College of Life Science and Technology, Guangxi University, Nanning 530004, China
| | - Ronghui Wen
- College of Life Science and Technology, Guangxi University, Nanning 530004, China
| | - Baoshan Chen
- College of Agriculture, Guangxi University, Nanning 530004, China
- Guangxi Key Laboratory of Sugarcane Biology, Guangxi University, Nanning 530004, China
| | - Xipu He
- School of Chemistry and Chemical Engineering, Guangxi University, Nanning 530004, China
- Guangxi Key Laboratory of Sugarcane Biology, Guangxi University, Nanning 530004, China
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21
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Patel R, Mitra B, Vinchurkar M, Adami A, Patkar R, Giacomozzi F, Lorenzelli L, Baghini MS. A review of recent advances in plant-pathogen detection systems. Heliyon 2022; 8:e11855. [DOI: 10.1016/j.heliyon.2022.e11855] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/22/2022] [Revised: 05/19/2022] [Accepted: 11/16/2022] [Indexed: 11/30/2022] Open
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22
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Madej-Kiełbik L, Gzyra-Jagieła K, Jóźwik-Pruska J, Dziuba R, Bednarowicz A. Biopolymer Composites with Sensors for Environmental and Medical Applications. MATERIALS (BASEL, SWITZERLAND) 2022; 15:7493. [PMID: 36363084 PMCID: PMC9659006 DOI: 10.3390/ma15217493] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/20/2022] [Revised: 10/13/2022] [Accepted: 10/21/2022] [Indexed: 06/16/2023]
Abstract
One of the biggest economic and environmental sustainability problems is the over-reliance on petroleum chemicals in polymer production. This paper presents an overview of the current state of knowledge on biopolymers combined with biosensors in terms of properties, compounding methods and applications, with a focus on medical and environmental aspects. Therefore, this article is devoted to environmentally friendly polymer materials. The paper presents an overview of the current state of knowledge on biopolymers combined with biosensors in terms of properties, compounding methods and applications, with a special focus on medical and environmental aspects. The paper presents the current state of knowledge, as well as prospects. The article shows that biopolymers made from renewable raw materials are of great interest in various fields of science and industry. These materials not only replace existing polymers in many applications, but also provide new combinations of properties for new applications. Composite materials based on biopolymers are considered superior to traditional non-biodegradable materials due to their ability to degrade when exposed to environmental factors. The paper highlights the combination of polymers with nanomaterials which allows the preparation of chemical sensors, thus enabling their use in environmental or medical applications due to their biocompatibility and sensitivity. This review focuses on analyzing the state of research in the field of biopolymer-sensor composites.
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Affiliation(s)
- Longina Madej-Kiełbik
- Lukasiewicz Research Network—Lodz Institute of Technology, 19/27 M. Sklodowskiej-Curie Str., 90-570 Lodz, Poland
| | - Karolina Gzyra-Jagieła
- Lukasiewicz Research Network—Lodz Institute of Technology, 19/27 M. Sklodowskiej-Curie Str., 90-570 Lodz, Poland
- Faculty of Material Technologies and Textile Design, Lodz University of Technology, 116 Żeromskiego Street, 90-924 Lodz, Poland
| | - Jagoda Jóźwik-Pruska
- Lukasiewicz Research Network—Lodz Institute of Technology, 19/27 M. Sklodowskiej-Curie Str., 90-570 Lodz, Poland
| | - Radosław Dziuba
- Department of World Economy and European Integration, University of Lodz, 41/43 Rewolucji 1905 Str., 90-214 Lodz, Poland
| | - Anna Bednarowicz
- Lukasiewicz Research Network—Lodz Institute of Technology, 19/27 M. Sklodowskiej-Curie Str., 90-570 Lodz, Poland
- Faculty of Material Technologies and Textile Design, Lodz University of Technology, 116 Żeromskiego Street, 90-924 Lodz, Poland
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23
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Hydrogel-extraction technique for non-invasive detection of blue fluorescent substances in plant leaves. Sci Rep 2022; 12:13598. [PMID: 35948743 PMCID: PMC9365774 DOI: 10.1038/s41598-022-17785-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/19/2022] [Accepted: 07/31/2022] [Indexed: 11/26/2022] Open
Abstract
This paper reports a new hydrogel extraction technique for detecting blue fluorescent substances in plant leaves. These blue fluorescent substances were extracted by placing a hydrogel film on the leaf of a cherry tomato plant infected with Ralstonia solanacearum; herein, chlorogenic acid was confirmed to be a blue fluorescent substance. The wavelength at the maximum fluorescence intensity of the film after the hydrogel extraction was similar to that of the methanolic extract obtained from the infected cherry tomato leaves. Chlorophyll was not extracted from the hydrogel film because no fluorescence peak was observed at 680 nm. Accordingly, the blue fluorescence of the substances extracted from the hydrogel film was not quenched by the strong absorption of chlorophyll in the blue light region. This hydrogel extraction technique can potentially detect small amounts of blue fluorescent substances and the changes in its amount within the leaves of infected plants. These changes in the amount of blue fluorescent substances in the early stages of infection can be used to detect presymptomatic infections. Therefore, hydrogel extraction is a promising technique for the noninvasive detection of infections before onset.
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24
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Ali Q, Zheng H, Rao MJ, Ali M, Hussain A, Saleem MH, Nehela Y, Sohail MA, Ahmed AM, Kubar KA, Ali S, Usman K, Manghwar H, Zhou L. Advances, limitations, and prospects of biosensing technology for detecting phytopathogenic bacteria. CHEMOSPHERE 2022; 296:133773. [PMID: 35114264 DOI: 10.1016/j.chemosphere.2022.133773] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/18/2021] [Revised: 01/23/2022] [Accepted: 01/25/2022] [Indexed: 05/22/2023]
Abstract
Phytopathogenic bacteria cause severe economic losses in agricultural production worldwide. The spread rates, severity, and emerging plant bacterial diseases have become serious threat to the sustainability of food sources and the fruit industry. Detection and diagnosis of plant diseases are imperative in order to manage plant diseases in field conditions, greenhouses, and food storage conditions as well as to maximize agricultural productivity and sustainability. To date, various techniques including, serological, observation-based, and molecular methods have been employed for plant disease detection. These methods are sensitive and specific for genetic identification of bacteria. However, these methods are specific for genetic identification of bacteria. Currently, the innovative biosensor-based disease detection technique is an attractive and promising alternative. A biosensor system involves biological recognition and transducer active receptors based on sensors used in plant-bacteria diagnosis. This system has been broadly used for the rapid diagnosis of plant bacterial pathogens. In the present review, we have discussed the conventional methods of bacterial-disease detection, however, the present review mainly focuses on the applications of different biosensor-based techniques along with point-of-care (POC), robotics, and cell phone-based systems. In addition, we have also discussed the challenges and limitations of these techniques.
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Affiliation(s)
- Qurban Ali
- State Key Laboratory for Managing Biotic and Chemical Threats to the Quality and Safety of Agro-products, Institute of Agro-product Safety and Nutrition, Zhejiang Academy of Agricultural Sciences, Hangzhou, China; Department of Plant Pathology, College of Plant Protection, Nanjing Agricultural University, Key Laboratory of Monitoring and Management of Crop Diseases and Pest Insects, Ministry of Education, Nanjing, 210095, China.
| | - Hongxia Zheng
- State Key Laboratory for Managing Biotic and Chemical Threats to the Quality and Safety of Agro-products, Institute of Agro-product Safety and Nutrition, Zhejiang Academy of Agricultural Sciences, Hangzhou, China
| | - Muhammad Junaid Rao
- Guangxi Key Laboratory of Sugarcane Biology, College of Agriculture, Guangxi University, 100 Daxue Rd., 8, Nanning, Guangxi, 530004, PR China
| | - Mohsin Ali
- College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, 430070, China
| | - Amjad Hussain
- College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, 430070, China
| | - Muhammad Hamzah Saleem
- College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, 430070, China
| | - Yasser Nehela
- Department of Plant Pathology, Citrus Research and Education Center, University of Florida, 700 Experiment Station Rd, Lake Alfred, FL, 33850, USA; Department of Agricultural Botany, Faculty of Agriculture, Tanta University, Tanta, Egypt
| | - Muhammad Aamir Sohail
- College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, 430070, China
| | - Agha Mushtaque Ahmed
- Department of Entomology, Faculty of Crop Protection, Sindh Agriculture University Tando Jam, Sindh, Pakistan
| | - Kashif Ali Kubar
- Faculty of Agriculture, Lasbela University of Agriculture, Water and Marine Sciences, Uthal, 90150, Balochistan, Pakistan
| | - Shafaqat Ali
- Department of Environmental Sciences and Engineering, Government College University Allama Iqbal Road, 38000, Faisalabad, Pakistan
| | - Kamal Usman
- Agricultural Research Station, Office of VP for Research & Graduate Studies, Qatar University, 2713, Doha, Qatar
| | - Hakim Manghwar
- Lushan Botanical Garden, Chinese Academy of Sciences, Jiujiang, Jiangxi, 332900, China.
| | - Lei Zhou
- State Key Laboratory for Managing Biotic and Chemical Threats to the Quality and Safety of Agro-products, Institute of Agro-product Safety and Nutrition, Zhejiang Academy of Agricultural Sciences, Hangzhou, China.
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25
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Kumar A, Choudhary A, Kaur H, Guha S, Mehta S, Husen A. Potential Applications of Engineered Nanoparticles in Plant Disease Management: A Critical Update. CHEMOSPHERE 2022; 295:133798. [PMID: 35122813 DOI: 10.1016/j.chemosphere.2022.133798] [Citation(s) in RCA: 18] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/31/2021] [Revised: 01/08/2022] [Accepted: 01/27/2022] [Indexed: 06/14/2023]
Abstract
Plant diseases caused by pathogenic entities pose severe issues to global food security. Effective sensory applications and tools for the effective determination of plant diseases become crucial to the assurance of food supply and agricultural sustainability. Antibody-mediated molecular assays and nucleic acid are gold-standard approaches for plant disease diagnosis, but the evaluating methodologies are liable, complex, and laborious. With the rise in global food demand, escalating the food production in threats of diverse pathogen ranges, and climate change is a major challenge. Engineered nanoparticles (NPs) have been inserted into conventional laboratory sequence technologies or molecular assays that provide a remarkable increment in selectivity and sensitivity. In the present scenario, they are useful in plant disease management as well as in plant health monitoring. The use of NPs could sustainably mitigate numerous food security issues and or threats in disease management by decreasing the risk of chemical inputs and alleviating supra detection of pathogens. Overall, this review paper discusses the role of NPs in plant diseases management, available commercial products. Additionally, the future directions and their regulatory laws in the usage of the nano-diagnostic approach for plant health monitoring have been explained.
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Affiliation(s)
- Antul Kumar
- Department of Botany, Punjab Agricultural University, Ludhiana, 141004, India
| | - Anuj Choudhary
- Department of Botany, Punjab Agricultural University, Ludhiana, 141004, India
| | - Harmanjot Kaur
- Department of Botany, Punjab Agricultural University, Ludhiana, 141004, India
| | - Satyakam Guha
- Department of Botany, Hansraj College, University of Delhi, Delhi, 110007, India
| | - Sahil Mehta
- International Centre for Genetic Engineering and Biotechnology, Aruna Asaf Ali Marg, New Delhi, 110067, India; School of Agricultural Sciences, K.R. Mangalam University, Sohna Rural, Haryana, 122103, India
| | - Azamal Husen
- Wolaita Sodo University, P.O. Box: 138, Wolaita, Ethiopia.
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26
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Gomez-Gutierrez SV, Goodwin SB. Loop-Mediated Isothermal Amplification for Detection of Plant Pathogens in Wheat ( Triticum aestivum). FRONTIERS IN PLANT SCIENCE 2022; 13:857673. [PMID: 35371152 PMCID: PMC8965322 DOI: 10.3389/fpls.2022.857673] [Citation(s) in RCA: 13] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/18/2022] [Accepted: 02/17/2022] [Indexed: 05/31/2023]
Abstract
Wheat plants can be infected by a variety of pathogen species, with some of them causing similar symptoms. For example, Zymoseptoria tritici and Parastagonospora nodorum often occur together and form the Septoria leaf blotch complex. Accurate detection of wheat pathogens is essential in applying the most appropriate disease management strategy. Loop-mediated isothermal amplification (LAMP) is a recent molecular technique that was rapidly adopted for detection of plant pathogens and can be implemented easily for detection in field conditions. The specificity, sensitivity, and facility to conduct the reaction at a constant temperature are the main advantages of LAMP over immunological and alternative nucleic acid-based methods. In plant pathogen detection studies, LAMP was able to differentiate related fungal species and non-target strains of virulent species with lower detection limits than those obtained with PCR. In this review, we explain the amplification process and elements of the LAMP reaction, and the variety of techniques for visualization of the amplified products, along with their advantages and disadvantages compared with alternative isothermal approaches. Then, a compilation of analyses that show the application of LAMP for detection of fungal pathogens and viruses in wheat is presented. We also describe the modifications included in real-time and multiplex LAMP that reduce common errors from post-amplification detection in traditional LAMP assays and allow discrimination of targets in multi-sample analyses. Finally, we discuss the utility of LAMP for detection of pathogens in wheat, its limitations, and current challenges of this technique. We provide prospects for application of real-time LAMP and multiplex LAMP in the field, using portable devices that measure fluorescence and turbidity, or facilitate colorimetric detection. New technologies for detection of plant pathogen are discussed that can be integrated with LAMP to obtain elevated analytical sensitivity of detection.
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27
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Duarte P, Menze L, Shoute L, Zeng J, Savchenko O, Lyu J, Chen J. Highly Efficient Capture and Quantification of the Airborne Fungal Pathogen Sclerotinia sclerotiorum Employing a Nanoelectrode-Activated Microwell Array. ACS OMEGA 2022; 7:459-468. [PMID: 35036715 PMCID: PMC8756577 DOI: 10.1021/acsomega.1c04878] [Citation(s) in RCA: 9] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/04/2021] [Accepted: 10/15/2021] [Indexed: 06/01/2023]
Abstract
In this study, we present a microdevice for the capture and quantification of Sclerotinia sclerotiorum spores, pathogenic agents of one of the most harmful infectious diseases of crops, Sclerotinia stem rot. The early prognosis of an outbreak is critical to avoid severe economic losses and can be achieved by the detection of a small number of airborne spores. However, the current lack of simple and effective methods to quantify fungal airborne pathogens has hindered the development of an accurate early warning system. We developed a device that remedies these limitations based on a microfluidic design that contains a nanothick aluminum electrode structure integrated with a picoliter well array for dielectrophoresis-driven capture of spores and on-chip quantitative detection employing impedimetric sensing. Based on experimental results, we demonstrated a highly efficient spore trapping rate of more than 90% with an effective impedimetric sensing method that allowed the spore quantification of each column in the array and achieved a sensitivity of 2%/spore at 5 kHz and 1.6%/spore at 20 kHz, enabling single spore detection. We envision that our device will contribute to the development of a low-cost microfluidic platform that could be integrated into an infectious plant disease forecasting tool for crop protection.
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Affiliation(s)
- Pedro
A. Duarte
- Department
of Electrical and Computer Engineering, University of Alberta, Edmonton, Alberta T6G 1H9, Canada
| | - Lukas Menze
- Department
of Electrical and Computer Engineering, University of Alberta, Edmonton, Alberta T6G 1H9, Canada
| | - Lian Shoute
- Department
of Electrical and Computer Engineering, University of Alberta, Edmonton, Alberta T6G 1H9, Canada
| | - Jie Zeng
- Department
of Electrical and Computer Engineering, University of Alberta, Edmonton, Alberta T6G 1H9, Canada
| | - Oleksandra Savchenko
- Department
of Electrical and Computer Engineering, University of Alberta, Edmonton, Alberta T6G 1H9, Canada
| | - Jingwei Lyu
- School
of Physics and Electronic Engineering, Northeast
Petroleum University, Daqing 163318, P. R. China
| | - Jie Chen
- Department
of Electrical and Computer Engineering, University of Alberta, Edmonton, Alberta T6G 1H9, Canada
- Department
of Biomedical Engineering, University of
Alberta, Edmonton, Alberta T6G 2V2, Canada
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28
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Latent potential of current plant diagnostics for detection of sugarcane diseases. CURRENT RESEARCH IN BIOTECHNOLOGY 2022. [DOI: 10.1016/j.crbiot.2022.10.002] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022] Open
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29
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Avila-Quezada GD, Golinska P, Rai M. Engineered nanomaterials in plant diseases: can we combat phytopathogens? Appl Microbiol Biotechnol 2021; 106:117-129. [PMID: 34913996 DOI: 10.1007/s00253-021-11725-w] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/03/2021] [Revised: 11/29/2021] [Accepted: 11/30/2021] [Indexed: 02/07/2023]
Abstract
Engineered nanomaterials (ENM) have a high potential for use in several areas of agriculture including plant pathology. Nanoparticles (NPs) alone can be applied for disease management due to their antimicrobial properties. Moreover, nanobiosensors allow a rapid and sensitive diagnosis of pathogens because NPs can be conjugated with nucleic acids, proteins and other biomolecules. The use of ENM in diagnosis, delivery of fungicides and therapy is an eco-friendly and economically viable alternative. This review focuses on different promising studies concerning ENM used for plant disease management including viruses, fungi, oomycetes and bacteria; diagnosis and delivery of antimicrobials and factors affecting the efficacy of nanomaterials, entry, translocation and toxicity. Although much research is required on metallic NPs due to the possible risks to the final consumer, ENMs are undoubtedly very useful tools to achieve food security in the world. KEY POINTS: • Increasing global population and fungicides have necessitated alternative technologies. • Nanomaterials can be used for detection, delivery and therapy of plant diseases. • The toxicity issues and safety should be considered before the use of nanomaterials.
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Affiliation(s)
| | - Patrycja Golinska
- Department of Microbiology, Nicolaus Copernicus University, 87-100, Toruń, Poland
| | - Mahendra Rai
- Department of Microbiology, Nicolaus Copernicus University, 87-100, Toruń, Poland.
- Nanotechnology Laboratory, Department of Biotechnology, SGB Amravati University, Amravati, 444 602, Maharashtra, India.
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30
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Chaudhary M, Verma S, Kumar A, Basavaraj YB, Tiwari P, Singh S, Chauhan SK, Kumar P, Singh SP. Graphene oxide based electrochemical immunosensor for rapid detection of groundnut bud necrosis orthotospovirus in agricultural crops. Talanta 2021; 235:122717. [PMID: 34517585 DOI: 10.1016/j.talanta.2021.122717] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/13/2021] [Revised: 07/11/2021] [Accepted: 07/13/2021] [Indexed: 01/11/2023]
Abstract
Groundnut bud necrosis orthotospovirus (GBNV) is one of the causative plant viruses responsible for the outbreak of many viral epidemics in food crops across India and other south-Asian countries. Its management is a major challenge due to fast vector transmission, and the non-availability of appropriate agrochemical treatment. The timely detection of GBNV becomes indispensable for the effective management of viral infection and the periodic monitoring of plant health. We report the fabrication of graphene oxide (GO) based electrochemical immunosensor for the rapid and sensitive detection of GBNV. The immunoelectrode is prepared by depositing GO onto indium-tin oxide (ITO) coated glass substrates and functionalized by anti-GBNV antibodies using N-ethyl-N'-(3- dimethylaminopropyl) carbodiimide hydrochloride and N-hydroxysuccinimide (EDC-NHS) conjugation chemistry. The response measurements of the immunoelectrodes revealed a sensitivity of 221 ± 1 μA μg-1 mL-1(n = 3) and limit of detection (LOD) of 5.7 ± 0.7 ng mL-1(n = 3) for the standard concentrations of GBNV antigen. Further, the GBNV detection was carried out in infected leaf extracts of three different host plants i.e., Tomato, Cowpea, and N. benthamiana, and the results have been compared with the conventionally used direct antigen coated enzyme-linked immunosorbent assay (DAC-ELISA) technique. The comparable results obtained for the detection of GBNV in infected plants using electrochemical immunosensing and DAC-ELISA techniques advocated the immense potential of GO based immunosensor as a point-of-care sensing device that is poised to overcome the limitations of the traditional methods of virus detection in field conditions and may transform the diagnostics in agriculture.
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Affiliation(s)
- Mohit Chaudhary
- Department of Agricultural Biotechnology, Sardar Vallabhbhai Patel University of Agriculture and Technology, Meerut, Uttar Pradesh, 250110, India
| | - Shilpi Verma
- Academy of Scientific and Innovative Research (AcSIR), CSIR-HRDC Campus, Ghaziabad, Uttar Pradesh, 201002, India; CSIR, National Physical Laboratory, Dr. K. S. Krishnan Road, New Delhi, 110012, India
| | - Ashwini Kumar
- Department of Agricultural Biotechnology, Sardar Vallabhbhai Patel University of Agriculture and Technology, Meerut, Uttar Pradesh, 250110, India; Division of Plant Pathology, ICAR-Indian Agricultural Research Institute, New Delhi, 110012, India
| | - Y B Basavaraj
- Division of Plant Pathology, ICAR-Indian Agricultural Research Institute, New Delhi, 110012, India
| | - Pratibha Tiwari
- Department of Chemistry, Hansraj College, University of Delhi, New Delhi, 110007, India
| | - Sandeep Singh
- CSIR, National Physical Laboratory, Dr. K. S. Krishnan Road, New Delhi, 110012, India
| | - Sunil K Chauhan
- Octacurve Research Foundation, Mansarovar, Civil Lines, Meerut, Uttar Pradesh, 250001, India
| | - Pushpendra Kumar
- Department of Agricultural Biotechnology, Sardar Vallabhbhai Patel University of Agriculture and Technology, Meerut, Uttar Pradesh, 250110, India
| | - Surinder P Singh
- Academy of Scientific and Innovative Research (AcSIR), CSIR-HRDC Campus, Ghaziabad, Uttar Pradesh, 201002, India; CSIR, National Physical Laboratory, Dr. K. S. Krishnan Road, New Delhi, 110012, India.
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31
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Ivanov AV, Safenkova IV, Zherdev AV, Dzantiev BB. The Potential Use of Isothermal Amplification Assays for In-Field Diagnostics of Plant Pathogens. PLANTS (BASEL, SWITZERLAND) 2021; 10:plants10112424. [PMID: 34834787 PMCID: PMC8621059 DOI: 10.3390/plants10112424] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/05/2021] [Revised: 11/02/2021] [Accepted: 11/05/2021] [Indexed: 05/27/2023]
Abstract
Rapid, sensitive, and timely diagnostics are essential for protecting plants from pathogens. Commonly, PCR techniques are used in laboratories for highly sensitive detection of DNA/RNA from viral, viroid, bacterial, and fungal pathogens of plants. However, using PCR-based methods for in-field diagnostics is a challenge and sometimes nearly impossible. With the advent of isothermal amplification methods, which provide amplification of nucleic acids at a certain temperature and do not require thermocyclic equipment, going beyond the laboratory has become a reality for molecular diagnostics. The amplification stage ceases to be limited by time and instruments. Challenges to solve involve finding suitable approaches for rapid and user-friendly plant preparation and detection of amplicons after amplification. Here, we summarize approaches for in-field diagnostics of phytopathogens based on different types of isothermal amplification and discuss their advantages and disadvantages. In this review, we consider a combination of isothermal amplification methods with extraction and detection methods compatible with in-field phytodiagnostics. Molecular diagnostics in out-of-lab conditions are of particular importance for protecting against viral, bacterial, and fungal phytopathogens in order to quickly prevent and control the spread of disease. We believe that the development of rapid, sensitive, and equipment-free nucleic acid detection methods is the future of phytodiagnostics, and its benefits are already visible.
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32
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Kovalskaya N, Hammond RW. Rapid diagnostic detection of tomato apical stunt viroid based on isothermal reverse transcription-recombinase polymerase amplification. J Virol Methods 2021; 300:114353. [PMID: 34767861 DOI: 10.1016/j.jviromet.2021.114353] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/30/2021] [Revised: 11/05/2021] [Accepted: 11/06/2021] [Indexed: 12/31/2022]
Abstract
Tomato apical stunt viroid (TASVd) is a serious threat to tomato plants that can cause a considerable yield loss. In the present study, two isothermal molecular diagnostic assays based on reverse transcription-recombinase polymerase amplification (RT-RPA) utilizing the AmplifyRP® platform for plant pathogen detection were developed. The results of this research demonstrated distinct specificity of both developed assays, AmplifyRP® Acceler8™ and AmplifyRP® XRT, expressed in the absence of any cross-reaction activity to all total RNA extracts obtained from plants infected with other pospiviroids. The RT-RPA assays detected viroid RNA in 81- and 27-fold dilutions of the original TASVd-infected crude extract for AmplifyRP® Acceler8™ and AmplifyRP® XRT, respectively. The sensitivity tests in serial water dilutions showed the ability of AmplifyRP® Acceler8™ and AmplifyRP® XRT to detect 8 and 80 fg of pure TASVd RNA transcript, respectively. The influence of crude extract on viroid RNA transcript detection was also examined and a decrease of sensitivity of approximately 100-fold for both RT-RPA assays was revealed. To our knowledge, this is the first report describing development of RT-RPA assays to detect TASVd in plants using the AmplifyRP® platform that can be further employed both in laboratory conditions and in the field for on-site diagnosis.
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Affiliation(s)
- Natalia Kovalskaya
- ORISE-USDA ARS USNA Floral and Nursery Plant Research Unit, 10300 Baltimore Ave, Bldg. 004, Rm. 211, Beltsville, MD, 20705, USA.
| | - Rosemarie W Hammond
- USDA ARS Molecular Plant Pathology Laboratory, 10300 Baltimore Ave, Bldg. 004, Rm. 214, Beltsville, MD, 20705, USA.
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33
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Zhang W, Jiao Y, Ding C, Shen L, Li Y, Yu Y, Huang K, Li B, Wang F, Yang J. Rapid Detection of Tomato Spotted Wilt Virus With Cas13a in Tomato and Frankliniella occidentalis. Front Microbiol 2021; 12:745173. [PMID: 34745047 PMCID: PMC8564384 DOI: 10.3389/fmicb.2021.745173] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/22/2021] [Accepted: 09/24/2021] [Indexed: 12/12/2022] Open
Abstract
As one of the top 10 plant viruses, the severity of losses to crop productivity caused by the tomato spotted wilt virus (TSWV) has resulted in an urgent need to develop a more sensitive and rapid method of detection. In this study, we developed a CRISPR/Cas13a-based detection system to diagnose TSWV in tomato and western flower thrips (Frankliniella occidentalis). The detection system relies on recombinase polymerase amplification and Cas13a-mediated collateral cleavage activity. Positive results can be distinguished after 20 min by a significantly enhanced fluorescence signal. We tested the sensitivity of CRISPR/Cas13a-based detection system and found that the detection system that we developed has limits of detection that reaches 2.26 × 102 copies/μl and a 10-fold increase compared with the sensitivity of using RT-PCR to detect the virus. Furthermore, the CRISPR/Cas13a-based detection system has a high selectivity for the TSWV without interference from other viruses. The CRISPR/Cas13a-based detection system was utilized to detect the TSWV in samples of tomato leaves and the transmission vector F. occidentalis that were fully consistent with the results when RT-PCR was used to detect the virus.
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Affiliation(s)
- Wanhong Zhang
- Key Laboratory of Tobacco Pest Monitoring Controlling and Integrated Management, Tobacco Research Institute of Chinese Academy of Agricultural Sciences, Qingdao, China
| | - Yubing Jiao
- Key Laboratory of Tobacco Pest Monitoring Controlling and Integrated Management, Tobacco Research Institute of Chinese Academy of Agricultural Sciences, Qingdao, China
| | - Chengying Ding
- Key Laboratory of Tobacco Pest Monitoring Controlling and Integrated Management, Tobacco Research Institute of Chinese Academy of Agricultural Sciences, Qingdao, China
| | - Lili Shen
- Key Laboratory of Tobacco Pest Monitoring Controlling and Integrated Management, Tobacco Research Institute of Chinese Academy of Agricultural Sciences, Qingdao, China
| | - Ying Li
- Key Laboratory of Tobacco Pest Monitoring Controlling and Integrated Management, Tobacco Research Institute of Chinese Academy of Agricultural Sciences, Qingdao, China
| | - Yanbi Yu
- Country Yunnan Province Company of China Tobacco Corporation, Kunming, China
| | - Kun Huang
- Honghe City Company of Yunnan Tobacco Company, Mile, China
| | - Bin Li
- Sichuan Province Company of China Tobacco Corporation, Chengdu, China
| | - Fenglong Wang
- Key Laboratory of Tobacco Pest Monitoring Controlling and Integrated Management, Tobacco Research Institute of Chinese Academy of Agricultural Sciences, Qingdao, China
| | - Jinguang Yang
- Key Laboratory of Tobacco Pest Monitoring Controlling and Integrated Management, Tobacco Research Institute of Chinese Academy of Agricultural Sciences, Qingdao, China
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34
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Tian XY, He DD, Bai S, Zeng WZ, Wang Z, Wang M, Wu LQ, Chen ZC. Physiological and molecular advances in magnesium nutrition of plants. PLANT AND SOIL 2021; 468:1-17. [PMID: 0 DOI: 10.1007/s11104-021-05139-w] [Citation(s) in RCA: 21] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/01/2021] [Accepted: 08/25/2021] [Indexed: 05/27/2023]
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35
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Yu H, Guo W, Lu X, Xu H, Yang Q, Tan J, Zhang W. Reduced graphene oxide nanocomposite based electrochemical biosensors for monitoring foodborne pathogenic bacteria: A review. Food Control 2021. [DOI: 10.1016/j.foodcont.2021.108117] [Citation(s) in RCA: 26] [Impact Index Per Article: 8.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
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36
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Jablonski M, Poghossian A, Keusgen M, Wege C, Schöning MJ. Detection of plant virus particles with a capacitive field-effect sensor. Anal Bioanal Chem 2021; 413:5669-5678. [PMID: 34244834 PMCID: PMC8270236 DOI: 10.1007/s00216-021-03448-8] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/23/2021] [Revised: 05/27/2021] [Accepted: 05/31/2021] [Indexed: 10/25/2022]
Abstract
Plant viruses are major contributors to crop losses and induce high economic costs worldwide. For reliable, on-site and early detection of plant viral diseases, portable biosensors are of great interest. In this study, a field-effect SiO2-gate electrolyte-insulator-semiconductor (EIS) sensor was utilized for the label-free electrostatic detection of tobacco mosaic virus (TMV) particles as a model plant pathogen. The capacitive EIS sensor has been characterized regarding its TMV sensitivity by means of constant-capacitance method. The EIS sensor was able to detect biotinylated TMV particles from a solution with a TMV concentration as low as 0.025 nM. A good correlation between the registered EIS sensor signal and the density of adsorbed TMV particles assessed from scanning electron microscopy images of the SiO2-gate chip surface was observed. Additionally, the isoelectric point of the biotinylated TMV particles was determined via zeta potential measurements and the influence of ionic strength of the measurement solution on the TMV-modified EIS sensor signal has been studied.
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Affiliation(s)
- Melanie Jablonski
- Institute of Nano- and Biotechnologies, FH Aachen, Heinrich-Mußmann-Str. 1, 52428, Jülich, Germany
- Institute of Pharmaceutical Chemistry, Philipps University Marburg, Marbacher Weg 6-10, 35032, Marburg, Germany
| | | | - Michael Keusgen
- Institute of Pharmaceutical Chemistry, Philipps University Marburg, Marbacher Weg 6-10, 35032, Marburg, Germany
| | - Christina Wege
- Institute of Biomaterials and Biomolecular Systems, University of Stuttgart, Pfaffenwaldring 57, 70569, Stuttgart, Germany
| | - Michael J Schöning
- Institute of Nano- and Biotechnologies, FH Aachen, Heinrich-Mußmann-Str. 1, 52428, Jülich, Germany.
- Institute of Biological Information Processing (IBI-3), Forschungszentrum Jülich GmbH, 52425, Jülich, Germany.
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37
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Voke E, Pinals RL, Goh NS, Landry MP. In Planta Nanosensors: Understanding Biocorona Formation for Functional Design. ACS Sens 2021; 6:2802-2814. [PMID: 34279907 PMCID: PMC10461777 DOI: 10.1021/acssensors.1c01159] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Abstract
Climate change and population growth are straining agricultural output. To counter these changes and meet the growing demand for food and energy, the monitoring and engineering of crops are becoming increasingly necessary. Nanoparticle-based sensors have emerged in recent years as new tools to advance agricultural practices. As these nanoparticle-based sensors enter and travel through the complex biofluids within plants, biomolecules including proteins, metabolites, lipids, and carbohydrates adsorb onto the nanoparticle surfaces, forming a coating known as the "bio-corona". Understanding these nanoparticle-biomolecule interactions that govern nanosensor function in plants will be essential to successfully develop and translate nanoparticle-based sensors into broader agricultural practice.
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Affiliation(s)
- Elizabeth Voke
- Department of Chemical and Biomolecular Engineering, University of California, Berkeley, California 94720, United States
| | - Rebecca L Pinals
- Department of Chemical and Biomolecular Engineering, University of California, Berkeley, California 94720, United States
| | - Natalie S Goh
- Department of Chemical and Biomolecular Engineering, University of California, Berkeley, California 94720, United States
| | - Markita P Landry
- Department of Chemical and Biomolecular Engineering, University of California, Berkeley, California 94720, United States
- Innovative Genomics Institute (IGI), Berkeley, California 94720, United States
- California Institute for Quantitative Biosciences, QB3, University of California, Berkeley, California 94720, United States
- Chan-Zuckerberg Biohub, San Francisco, California 94158, United States
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38
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Naikoo GA, Awan T, Hassan IU, Salim H, Arshad F, Ahmed W, Asiri AM, Qurashi A. Nanomaterials-Based Sensors for Respiratory Viral Detection: A Review. IEEE SENSORS JOURNAL 2021; 21:17643-17656. [PMID: 35790098 PMCID: PMC8769020 DOI: 10.1109/jsen.2021.3085084] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 04/10/2021] [Accepted: 05/13/2021] [Indexed: 06/15/2023]
Abstract
Contagious diseases are the principal cause of mortality, particularly respiratory viruses, a real menace for public health and economic development worldwide. Therefore, timely diagnosis and treatments are the only life-saving strategy to overcome any epidemic and particularly the ongoing prevailing pandemic COVID-19 caused by SARS-CoV-2. A rapid identification, point of care, portable, highly sensitive, stable, and inexpensive device is needed which is exceptionally satisfied by sensor technology. Consequently, the researchers have directed their attention to employing sensors targeting multiple analyses of pathogenic detections across the world. Nanostructured materials (nanoparticles, nanowires, nanobundles, etc.), owing to their unique characteristics such as large surface-to-volume ratio and nanoscale interactions, are widely employed to fabricate facile sensors to meet all the immediate emerging challenges and threats. This review is anticipated to foster researchers in developing advanced nanomaterials-based sensors for the increasing number of COVID-19 cases across the globe. The mechanism of respiratory viral detection by nanomaterials-based sensors has been reported. Moreover, the advantages, disadvantages, and their comparison with conventional sensors are summarized. Furthermore, we have highlighted the challenges and future potential of these sensors for achieving efficient and rapid detection.
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Affiliation(s)
- Gowhar A. Naikoo
- Department of Mathematics and SciencesCollege of Arts and Applied SciencesDhofar UniversitySalalahPC 211Oman
| | - Tasbiha Awan
- Department of Mathematics and SciencesCollege of Arts and Applied SciencesDhofar UniversitySalalahPC 211Oman
| | | | - Hiba Salim
- Department of Mathematics and SciencesCollege of Arts and Applied SciencesDhofar UniversitySalalahPC 211Oman
| | - Fareeha Arshad
- Department of BiochemistryAligarh Muslim UniversityUttar Pradesh202002India
| | - Waqar Ahmed
- School of Mathematics and Physics, College of ScienceUniversity of LincolnLincolnLN6 7TSU.K.
| | - Abdullah M. Asiri
- Department of ChemistryFaculty of ScienceKing Abdulaziz UniversityJeddahPC 21589Saudi Arabia
| | - Ahsanulhaq Qurashi
- Department of ChemistryKhalifa UniversityAbu DhabiPC 127788United Arab Emirates
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39
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Surface Plasmon Resonance Assay for Label‐Free and Selective Detection of
Xylella Fastidiosa. ADVANCED NANOBIOMED RESEARCH 2021. [DOI: 10.1002/anbr.202100043] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
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40
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Detecting Infected Cucumber Plants with Close-Range Multispectral Imagery. REMOTE SENSING 2021. [DOI: 10.3390/rs13152948] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Abstract
This study used close-range multispectral imagery over cucumber plants inside a commercial greenhouse to detect powdery mildew due to Podosphaera xanthii. It was collected using a MicaSense® RedEdge camera at 1.5 m over the top of the plant. Image registration was performed using Speeded-Up Robust Features (SURF) with an affine geometric transformation. The image background was removed using a binary mask created with the aligned NIR band of each image, and the illumination was corrected using Cheng et al.’s algorithm. Different features were computed, including RGB, image reflectance values, and several vegetation indices. For each feature, a fine Gaussian Support Vector Machines algorithm was trained and validated to classify healthy and infected pixels. The data set to train and validate the SVM was composed of 1000 healthy and 1000 infected pixels, split 70–30% into training and validation datasets, respectively. The overall validation accuracy was 89, 73, 82, 51, and 48%, respectively, for blue, green, red, red-edge, and NIR band image. With the RGB images, we obtained an overall validation accuracy of 89%, while the best vegetation index image was the PMVI-2 image which produced an overall accuracy of 81%. Using the five bands together, overall accuracy dropped from 99% in the training to 57% in the validation dataset. While the results of this work are promising, further research should be considered to increase the number of images to achieve better training and validation datasets.
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41
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Das S, Agarwal DK, Mandal B, Rao VR, Kundu T. Detection of the Chilli Leaf Curl Virus Using an Attenuated Total Reflection-Mediated Localized Surface-Plasmon-Resonance-Based Optical Platform. ACS OMEGA 2021; 6:17413-17423. [PMID: 34278127 PMCID: PMC8280655 DOI: 10.1021/acsomega.1c01702] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/30/2021] [Accepted: 06/09/2021] [Indexed: 05/16/2023]
Abstract
The development of a nanoparticle-based optical platform has been presented as a biosensor for detecting target-specific plant virus DNA. The binding dynamics of gold nanoparticles has been studied on the amine-functionalized surface by the attenuated total reflection (ATR)-based evanescent wave absorption method monitoring the localized surface plasmon resonance (LSPR). The developed surface was established as a refractive index sensor by monitoring the LSPR absorption peak of gold nanoparticles. This nanoparticle-immobilized surface was explored to establish as a biosensing platform with target-specific immunoglobulin (IgG) antibody-antigen interaction. The IgG concentration-dependent variation of absorbance was correlated with the refractive index change. After successfully establishing this ATR configuration as an LSPR-based biosensor, the single-stranded DNA of the chilli leaf curl virus was detected using its complementary DNA sequence as a receptor. The limit of detection of this sensor was determined to be 1.0 μg/mL for this target viral DNA. This ATR absorption technique has enormous potential as an LSPR based nano-biosensor for the detection of other begomoviruses.
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Affiliation(s)
- Sonatan Das
- Centre
for Research in Nanotechnology and Science, Indian Institute of Technology Bombay, Mumbai 400076, India
| | - Dilip Kumar Agarwal
- Department
of Physics, Indian Institute of Technology
Bombay, Mumbai 400076, India
| | - Bikash Mandal
- Advanced
Centre for Plant Virology, Indian Agricultural
Research Institute, Pusa, New Delhi, Delhi 110012, India
| | - V. Ramgopal Rao
- Centre
for Research in Nanotechnology and Science, Indian Institute of Technology Bombay, Mumbai 400076, India
- Department
of Electrical Engineering, Indian Institute
of Technology Bombay, Mumbai 400076, India
| | - Tapanendu Kundu
- Centre
for Research in Nanotechnology and Science, Indian Institute of Technology Bombay, Mumbai 400076, India
- Department
of Physics, Indian Institute of Technology
Bombay, Mumbai 400076, India
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Cheng SQ, Liu XQ, Han ZL, Rong Y, Qin SY, Sun Y, Li H. Tailoring CO 2-Activated Ion Nanochannels Using Macrocyclic Pillararenes. ACS APPLIED MATERIALS & INTERFACES 2021; 13:27255-27261. [PMID: 34029047 DOI: 10.1021/acsami.1c03329] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/12/2023]
Abstract
Gas-responsive nanochannels have great relevance for applications in many fields. Inspired by CO2-sensitive ion channels, herein we present an approach for designing solid-state nanochannels that allow controlled regulation of ion transport in response to alternate CO2/N2 stimuli. The pillar[5]arene (P5N) bearing diethylamine groups can convert into the water-soluble host P5C, containing cationic tertiary ammonium salt groups after absorbing CO2. Subsequently, the nanochannel walls are tailored using P5N-based host-guest chemistry. The ion transport rate of K+ in the P5N nanochannels under CO2 was 1.66 × 10-4 mol h-1 m-2, whereas that under N2 was 7.98 × 10-4 mol h-1 m-2. Notably, there was no significant change to the ion current after eight cycles, which may indicate the stability and repeatability of CO2-activated ion nanochannels. It is speculated that the difference in ion conductance resulted from the change in wettability and surface charge within the nanochannels in response to the gas stimuli. Achieving CO2-activated ion transport in solid-state nanochannels opens new avenues for biomimetic nanopore systems and advanced separation processes.
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Affiliation(s)
- Shi-Qi Cheng
- Hubei Key Laboratory of Catalysis and Materials Science, College of Chemistry and Material Sciences, South-Central University for Nationalities, Wuhan 430074, P.R. China
| | - Xue-Qing Liu
- Key Laboratory of Optoelectronic Chemical Materials and Devices, Ministry of Education, Jianghan University, Wuhan 430056, P.R. China
| | - Zhi-Liang Han
- Key Laboratory of Optoelectronic Chemical Materials and Devices, Ministry of Education, Jianghan University, Wuhan 430056, P.R. China
| | - Yu Rong
- Hubei Key Laboratory of Catalysis and Materials Science, College of Chemistry and Material Sciences, South-Central University for Nationalities, Wuhan 430074, P.R. China
| | - Si-Yong Qin
- Hubei Key Laboratory of Catalysis and Materials Science, College of Chemistry and Material Sciences, South-Central University for Nationalities, Wuhan 430074, P.R. China
| | - Yue Sun
- Hubei Key Laboratory of Catalysis and Materials Science, College of Chemistry and Material Sciences, South-Central University for Nationalities, Wuhan 430074, P.R. China
| | - Haibing Li
- Key Laboratory of Pesticide and Chemical Biology (CCNU), Ministry of Education, College of Chemistry, Central China Normal University, Wuhan 430079 P.R. China
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Dyussembayev K, Sambasivam P, Bar I, Brownlie JC, Shiddiky MJA, Ford R. Biosensor Technologies for Early Detection and Quantification of Plant Pathogens. Front Chem 2021; 9:636245. [PMID: 34150716 PMCID: PMC8207201 DOI: 10.3389/fchem.2021.636245] [Citation(s) in RCA: 17] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/01/2020] [Accepted: 02/19/2021] [Indexed: 11/13/2022] Open
Abstract
Plant pathogens are a major reason of reduced crop productivity and may lead to a shortage of food for both human and animal consumption. Although chemical control remains the main method to reduce foliar fungal disease incidence, frequent use can lead to loss of susceptibility in the fungal population. Furthermore, over-spraying can cause environmental contamination and poses a heavy financial burden on growers. To prevent or control disease epidemics, it is important for growers to be able to detect causal pathogen accurately, sensitively, and rapidly, so that the best practice disease management strategies can be chosen and enacted. To reach this goal, many culture-dependent, biochemical, and molecular methods have been developed for plant pathogen detection. However, these methods lack accuracy, specificity, reliability, and rapidity, and they are generally not suitable for in-situ analysis. Accordingly, there is strong interest in developing biosensing systems for early and accurate pathogen detection. There is also great scope to translate innovative nanoparticle-based biosensor approaches developed initially for human disease diagnostics for early detection of plant disease-causing pathogens. In this review, we compare conventional methods used in plant disease diagnostics with new sensing technologies in particular with deeper focus on electrochemical and optical biosensors that may be applied for plant pathogen detection and management. In addition, we discuss challenges facing biosensors and new capability the technology provides to informing disease management strategies.
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Affiliation(s)
- Kazbek Dyussembayev
- Centre for Planetary Health and Food Security, Griffith University, Nathan, QLD, Australia
- School of Environment and Science, Griffith University, Nathan, QLD, Australia
| | - Prabhakaran Sambasivam
- Centre for Planetary Health and Food Security, Griffith University, Nathan, QLD, Australia
| | - Ido Bar
- Centre for Planetary Health and Food Security, Griffith University, Nathan, QLD, Australia
- School of Environment and Science, Griffith University, Nathan, QLD, Australia
| | - Jeremy C. Brownlie
- Centre for Planetary Health and Food Security, Griffith University, Nathan, QLD, Australia
- School of Environment and Science, Griffith University, Nathan, QLD, Australia
| | - Muhammad J. A. Shiddiky
- School of Environment and Science, Griffith University, Nathan, QLD, Australia
- Queensland Micro and Nanotechnology Centre, Griffith University, Nathan, QLD, Australia
| | - Rebecca Ford
- Centre for Planetary Health and Food Security, Griffith University, Nathan, QLD, Australia
- School of Environment and Science, Griffith University, Nathan, QLD, Australia
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Rana K, Mittal J, Narang J, Mishra A, Pudake RN. Graphene Based Electrochemical DNA Biosensor for Detection of False Smut of Rice (Ustilaginoidea virens). THE PLANT PATHOLOGY JOURNAL 2021; 37:291-298. [PMID: 34111918 PMCID: PMC8200582 DOI: 10.5423/ppj.oa.11.2020.0207] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/18/2020] [Revised: 04/19/2021] [Accepted: 05/15/2021] [Indexed: 06/12/2023]
Abstract
False smut caused by Ustilaginoidea virens is an important rice fungal disease that significantly decreases its production. In the recent past, conventional methods have been developed for its detection that is time-consuming and need high-cost equipments. The research and development in nanotechnology have made it possible to assemble efficient recognition interfaces in biosensors. In this study, we present a simple, sensitive, and selective oxidized graphene-based geno-biosensor for the detection of rice false smut. The biosensor has been developed using a probe DNA as a biological recognition element on paper electrodes, and oxidized graphene to enhance the limit of detection and sensitivity of the sensor. Probe single-stranded DNA (ssDNA) and target ssDNA hybridization on the interface surface has been quantitatively measured with the electrochemical analysis tools namely, cyclic voltammetry, and linear sweep voltammetry. To confirm the selectivity of the device, probe hybridization with non-complementary ssDNA target has been studied. In our study, the developed sensor was able to detect up to 10 fM of target ssDNA. The paper electrodes were employed to produce an effective and cost-effective platform for the immobilization of the DNA and can be extended to design low-cost biosensors for the detection of the other plant pathogens.
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Affiliation(s)
- Kritika Rana
- Amity Institute of Nanotechnology, Amity University Uttar Pradesh, Noida 201303, UP, India
| | - Jagjiwan Mittal
- Amity Institute of Nanotechnology, Amity University Uttar Pradesh, Noida 201303, UP, India
| | - Jagriti Narang
- Amity Institute of Nanotechnology, Amity University Uttar Pradesh, Noida 201303, UP, India
- Current address: Department of Biotechnology, Jamia Hamdard, New Delhi 110062, UP, India
| | - Annu Mishra
- Amity Institute of Nanotechnology, Amity University Uttar Pradesh, Noida 201303, UP, India
| | - Ramesh Namdeo Pudake
- Amity Institute of Nanotechnology, Amity University Uttar Pradesh, Noida 201303, UP, India
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George Kerry R, Ukhurebor KE, Kumari S, Maurya GK, Patra S, Panigrahi B, Majhi S, Rout JR, Rodriguez-Torres MDP, Das G, Shin HS, Patra JK. A comprehensive review on the applications of nano-biosensor-based approaches for non-communicable and communicable disease detection. Biomater Sci 2021; 9:3576-3602. [PMID: 34008586 DOI: 10.1039/d0bm02164d] [Citation(s) in RCA: 20] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Abstract
The outstretched applications of biosensors in diverse domains has become the reason for their attraction for scientific communities. Because they are analytical devices, they can detect both quantitative and qualitative biological components through the generation of detectable signals. In the recent past, biosensors witnessed significant changes and developments in their design as well as features. Nanotechnology has revolutionized sensing phenomena by increasing biodiagnostic capacity in terms of specificity, size, and cost, resulting in exceptional sensitivity and flexibility. The steep increase of non-communicable diseases across the world has emerged as a matter of concern. In parallel, the abrupt outbreak of communicable diseases poses a serious threat to mankind. For decreasing the morbidity and mortality associated with various communicable and non-communicable diseases, early detection and subsequent treatment are indispensable. Detection of different biological markers generates quantifiable signals that can be electrochemical, mass-based, optical, thermal, or piezoelectric. Speculating on the incumbent applicability and versatility of nano-biosensors in large disciplines, this review highlights different types of biosensors along with their components and detection mechanisms. Moreover, it deals with the current advancements made in biosensors and the applications of nano-biosensors in detection of various non-communicable and communicable diseases, as well as future prospects of nano-biosensors for diagnostics.
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Affiliation(s)
- Rout George Kerry
- Department of Biotechnology, Utkal University, Vani Vihar, Bhubaneswar, Odisha 751004, India
| | - Kingsley Eghonghon Ukhurebor
- Climatic/Environmental/Telecommunication Unit, Department of Physics, Edo University Iyamho, P.B.M. 04, Auchi, 312101, Edo State, Nigeria
| | - Swati Kumari
- Biopioneer Private limited, Bhubaneswar, Odisha 751024, India
| | - Ganesh Kumar Maurya
- Zoology Section, Mahila MahaVidyalya, Banaras Hindu University, Varanasi-221005, India
| | - Sushmita Patra
- Department of Biotechnology, North Odissa University, Takatpur, Baripada, Odisha 757003, India
| | - Bijayananda Panigrahi
- Biopioneer Private limited, Bhubaneswar, Odisha 751024, India and School of Biotechnology, Kalinga Institute of Industrial Technology, Bhubaneswar, Odisha 751024, India
| | - Sanatan Majhi
- Department of Biotechnology, Utkal University, Vani Vihar, Bhubaneswar, Odisha 751004, India
| | | | - María Del Pilar Rodriguez-Torres
- Departamento de Ingeniería Molecular de Materiales, Centro de Física Aplicada y Tecnología Avanzada, Universidad Nacional Autónoma de México, Blvd Juriquilla 3001, 76230, Querétaro, Mexico
| | - Gitishree Das
- Research Institute of Biotechnology & Medical Converged Science, Dongguk University-Seoul, Goyangsi, Republic of Korea.
| | - Han-Seung Shin
- Department of Food Science & Biotechnology, Dongguk University-Seoul, Goyangsi, Republic of Korea
| | - Jayanta Kumar Patra
- Research Institute of Biotechnology & Medical Converged Science, Dongguk University-Seoul, Goyangsi, Republic of Korea.
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Paul R, Ostermann E, Chen Y, Saville AC, Yang Y, Gu Z, Whitfield AE, Ristaino JB, Wei Q. Integrated microneedle-smartphone nucleic acid amplification platform for in-field diagnosis of plant diseases. Biosens Bioelectron 2021; 187:113312. [PMID: 34004545 DOI: 10.1016/j.bios.2021.113312] [Citation(s) in RCA: 26] [Impact Index Per Article: 8.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/28/2021] [Revised: 04/20/2021] [Accepted: 05/04/2021] [Indexed: 01/09/2023]
Abstract
We demonstrate an integrated microneedle (MN)-smartphone nucleic acid amplification platform for "sample-to-answer" diagnosis of multiplexed plant pathogens within 30 min. This portable system consists of a polymeric MN patch for rapid nucleic acid extraction within a minute and a 3D-printed smartphone imaging device for loop-mediated isothermal amplification (LAMP) reaction and detection. We expanded the extraction of the MN technology for DNA targets as in the previous study (ACS Nano, 2019, 13, 6540-6549) to more fragile RNA biomarkers, evaluated the storability of the extracted nucleic acid samples on MN surfaces, and developed a smartphone-based LAMP amplification and fluorescent reader device that can quantify four LAMP reactions on the same chip. In addition, we have found that the MN patch containing as few as a single needle tip successfully extracted enough RNA for RT-PCR or RT-LAMP analysis. Moreover, MN-extracted RNA samples remained stable on MN surfaces for up to three days. The MN-smartphone platform has been used to detect both Phytophthora infestans DNA and tomato spotted wilt virus (TSWV) RNA down to 1 pg, comparable to the results from a benchtop thermal cycler. Finally, multiplexed detection of P. infestans and TSWV through a single extraction from infected tomato leaves and amplification on the smartphone without benchtop equipment was demonstrated.
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Affiliation(s)
- Rajesh Paul
- Department of Chemical and Biomolecular Engineering, North Carolina State University, Raleigh, NC, 27696, USA
| | - Emily Ostermann
- Department of Chemical and Biomolecular Engineering, North Carolina State University, Raleigh, NC, 27696, USA
| | - Yuting Chen
- Department of Entomology and Plant Pathology, North Carolina State University, Raleigh, NC, 27695, USA
| | - Amanda C Saville
- Department of Entomology and Plant Pathology, North Carolina State University, Raleigh, NC, 27695, USA
| | - Yuming Yang
- Department of Agrotechnology and Food Sciences, Wageningen University, 6708, PB, Wageningen, Netherlands
| | - Zhen Gu
- College of Pharmaceutical Sciences, Zhejiang University, Hangzhou, Zhejiang, 310058, China; Zhejiang Laboratory of Systems and Precision Medicine, Zhejiang University Medical Cencter, Hangzhou, Zhejing, 310058, China; Deparment of General Surgery, Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University, Hangzhou, 310058, China
| | - Anna E Whitfield
- Department of Entomology and Plant Pathology, North Carolina State University, Raleigh, NC, 27695, USA; Emerging Plant Disease and Global Food Security Cluster, North Carolina State University, Raleigh, NC, 27696, USA
| | - Jean B Ristaino
- Department of Entomology and Plant Pathology, North Carolina State University, Raleigh, NC, 27695, USA; Emerging Plant Disease and Global Food Security Cluster, North Carolina State University, Raleigh, NC, 27696, USA
| | - Qingshan Wei
- Department of Chemical and Biomolecular Engineering, North Carolina State University, Raleigh, NC, 27696, USA; Emerging Plant Disease and Global Food Security Cluster, North Carolina State University, Raleigh, NC, 27696, USA.
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Tholl D, Hossain O, Weinhold A, Röse USR, Wei Q. Trends and applications in plant volatile sampling and analysis. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2021; 106:314-325. [PMID: 33506558 DOI: 10.1111/tpj.15176] [Citation(s) in RCA: 60] [Impact Index Per Article: 20.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/24/2020] [Revised: 01/09/2021] [Accepted: 01/14/2021] [Indexed: 05/12/2023]
Abstract
Volatile organic compounds (VOCs) released by plants serve as information and defense chemicals in mutualistic and antagonistic interactions and mitigate effects of abiotic stress. Passive and dynamic sampling techniques combined with gas chromatography-mass spectrometry analysis have become routine tools to measure emissions of VOCs and determine their various functions. More recently, knowledge of the roles of plant VOCs in the aboveground environment has led to the exploration of similar functions in the soil and rhizosphere. Moreover, VOC patterns have been recognized as sensitive and time-dependent markers of biotic and abiotic stress. This focused review addresses these developments by presenting recent progress in VOC sampling and analysis. We show advances in the use of small, inexpensive sampling devices and describe methods to monitor plant VOC emissions in the belowground environment. We further address latest trends in real-time measurements of volatilomes in plant phenotyping and most recent developments of small portable devices and VOC sensors for non-invasive VOC fingerprinting of plant disease. These technologies allow for innovative approaches to study plant VOC biology and application in agriculture.
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Affiliation(s)
- Dorothea Tholl
- Department of Biological Sciences, Virginia Tech, Blacksburg, VA, 24061, USA
| | - Oindrila Hossain
- Department of Chemical and Biomolecular Engineering, North Carolina State University, Raleigh, NC, 27695, USA
- Emerging Plant Disease and Global Food Security Cluster, Norther Carolina State University, Raleigh, NC, 27695, USA
| | - Alexander Weinhold
- Molecular Interaction Ecology, Institute of Biodiversity, Friedrich Schiller University Jena, Jena, 07745, Germany
- Molecular Interaction Ecology, German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Leipzig, 04103, Germany
| | - Ursula S R Röse
- School of Biological Sciences, University of New England, Biddeford, ME, 04005, USA
| | - Qingshan Wei
- Department of Chemical and Biomolecular Engineering, North Carolina State University, Raleigh, NC, 27695, USA
- Emerging Plant Disease and Global Food Security Cluster, Norther Carolina State University, Raleigh, NC, 27695, USA
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Weng S, Hu X, Wang J, Tang L, Li P, Zheng S, Zheng L, Huang L, Xin Z. Advanced Application of Raman Spectroscopy and Surface-Enhanced Raman Spectroscopy in Plant Disease Diagnostics: A Review. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2021; 69:2950-2964. [PMID: 33677962 DOI: 10.1021/acs.jafc.0c07205] [Citation(s) in RCA: 25] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/12/2023]
Abstract
Plant diseases result in 20-40% of agricultural loss every year worldwide. Timely detection of plant diseases can effectively prevent the development and spread of diseases and ensure the agricultural yield. High-throughput and rapid methods are in great demand. This review investigates the advanced application of Raman spectroscopy (RS) and surface-enhanced Raman spectroscopy (SERS) in the detection of plant diseases. The determination of bacterial diseases and stress-induced diseases, fungal diseases, viral diseases, pests in beans, and mycotoxins related to plant diseases using RS and SERS are discussed in detail. Then, biomarkers for RS and SERS detection are analyzed with regard to plant disease diagnosis. Finally, the advantages and challenges are further illustrated. Additionally, potential alternatives are proposed for the challenges. The review is expected to provide a reference and guidance for the use of RS and SERS in plant disease diagnostics.
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Affiliation(s)
- Shizhuang Weng
- National Engineering Research Center for Agro-Ecological Big Data Analysis & Application, Anhui University, 111 Jiulong Road, Hefei 230601, People's Republic of China
| | - Xujin Hu
- National Engineering Research Center for Agro-Ecological Big Data Analysis & Application, Anhui University, 111 Jiulong Road, Hefei 230601, People's Republic of China
| | - Jinghong Wang
- National Engineering Research Center for Agro-Ecological Big Data Analysis & Application, Anhui University, 111 Jiulong Road, Hefei 230601, People's Republic of China
| | - Le Tang
- National Engineering Research Center for Agro-Ecological Big Data Analysis & Application, Anhui University, 111 Jiulong Road, Hefei 230601, People's Republic of China
| | - Pan Li
- Hefei Institute of Physical Science, Chinese Academy of Sciences, 350 Shushanhu Road, Hefei 230031, People's Republic of China
| | - Shouguo Zheng
- Hefei Institute of Physical Science, Chinese Academy of Sciences, 350 Shushanhu Road, Hefei 230031, People's Republic of China
| | - Ling Zheng
- National Engineering Research Center for Agro-Ecological Big Data Analysis & Application, Anhui University, 111 Jiulong Road, Hefei 230601, People's Republic of China
| | - Linsheng Huang
- National Engineering Research Center for Agro-Ecological Big Data Analysis & Application, Anhui University, 111 Jiulong Road, Hefei 230601, People's Republic of China
| | - Zhenghua Xin
- College of Information Engineering, Suzhou University, 1769 Xuefu Avenue, Suzhou, People's Republic of China
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Mahshid SS, Flynn SE, Mahshid S. The potential application of electrochemical biosensors in the COVID-19 pandemic: A perspective on the rapid diagnostics of SARS-CoV-2. Biosens Bioelectron 2021; 176:112905. [PMID: 33358285 PMCID: PMC7746140 DOI: 10.1016/j.bios.2020.112905] [Citation(s) in RCA: 83] [Impact Index Per Article: 27.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/17/2020] [Revised: 12/11/2020] [Accepted: 12/13/2020] [Indexed: 12/13/2022]
Abstract
Electrochemical biosensors combine the selectivity of electrochemical signal transducers with the specificity of biomolecular recognition strategies. Although they have been broadly studied in different areas of diagnostics, they are not yet fully commercialized. During the COVID-19 pandemic, electrochemical platforms have shown the potential to address significant limitations of conventional diagnostic platforms, including accuracy, affordability, and portability. The advantages of electrochemical platforms make them a strong candidate for rapid point-of-care detection of SARS-CoV-2 infection by targeting not only viral RNA but antigens and antibodies. Herein, we reviewed advancements in electrochemical biosensing platforms towards the detection of SARS-CoV-2 through studying similar viruses.
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Affiliation(s)
- Sahar Sadat Mahshid
- Biological Sciences Department, Sunnybrook Research Institute, Toronto, ON, M4N 3M5, Canada.
| | | | - Sara Mahshid
- Department of Bioengineering, McGill University, Montréal, QC, H3A 0C3, Canada.
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50
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Ali Q, Ahmar S, Sohail MA, Kamran M, Ali M, Saleem MH, Rizwan M, Ahmed AM, Mora-Poblete F, do Amaral Júnior AT, Mubeen M, Ali S. Research advances and applications of biosensing technology for the diagnosis of pathogens in sustainable agriculture. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2021; 28:9002-9019. [PMID: 33464530 DOI: 10.1007/s11356-021-12419-6] [Citation(s) in RCA: 20] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/13/2020] [Accepted: 01/06/2021] [Indexed: 05/06/2023]
Abstract
Plant diseases significantly impact the global economy, and plant pathogenic microorganisms such as nematodes, viruses, bacteria, fungi, and viroids may be the etiology for most infectious diseases. In agriculture, the development of disease-free plants is an important strategy for the determination of the survival and productivity of plants in the field. This article reviews biosensor methods of disease detection that have been used effectively in other fields, and these methods could possibly transform the production methods of the agricultural industry. The precise identification of plant pathogens assists in the assessment of effective management steps for minimization of production loss. The new plant pathogen detection methods include evaluation of signs of disease, detection of cultured organisms, or direct examination of contaminated tissues through molecular and serological techniques. Laboratory-based approaches are costly and time-consuming and require specialized skills. The conclusions of this review also indicate that there is an urgent need for the establishment of a reliable, fast, accurate, responsive, and cost-effective testing method for the detection of field plants at early stages of growth. We also summarized new emerging biosensor technologies, including isothermal amplification, detection of nanomaterials, paper-based techniques, robotics, and lab-on-a-chip analytical devices. However, these constitute novelty in the research and development of approaches for the early diagnosis of pathogens in sustainable agriculture.
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Affiliation(s)
- Qurban Ali
- Department of Plant Pathology, College of Plant Protection, Nanjing Agricultural University, Key Laboratory of Integrated Management of Crop Diseases and Pests, Ministry of Education, Nanjing, People's Republic of China
| | - Sunny Ahmar
- College of Plant Sciences and Technology, Huazhong Agricultural University, Wuhan, Hubei, 430070, People's Republic of China
| | - Muhammad Aamir Sohail
- College of Plant Sciences and Technology, Huazhong Agricultural University, Wuhan, Hubei, 430070, People's Republic of China
| | - Muhammad Kamran
- Key Laboratory of Soil Environment and Pollution Remediation, Institute of Soil Science, Chinese Academy of Sciences, Nanjing, 210008, People's Republic of China.
| | - Mohsin Ali
- College of Plant Sciences and Technology, Huazhong Agricultural University, Wuhan, Hubei, 430070, People's Republic of China
| | - Muhammad Hamzah Saleem
- College of Plant Sciences and Technology, Huazhong Agricultural University, Wuhan, Hubei, 430070, People's Republic of China
| | - Muhammad Rizwan
- Department of Environmental Sciences and Engineering, Government College University Faisalabad, Faisalabad, 38000, Pakistan
| | - Agha Mushtaque Ahmed
- Department of Entomology, Faculty of Crop Protection, Sindh Agriculture University Tandojam, Hyderabad, Sindh, 70060, Pakistan
| | - Freddy Mora-Poblete
- Institute of Biological Sciences, University of Talca, 2 Norte 685, 3460000, Talca, Chile.
| | - Antônio Teixeira do Amaral Júnior
- Laboratório de Melhoramento Genético Vegetal, Centro de Ciências e Tecnologias Agropecuárias, Universidade Estadual Norte Fluminense Darcy Ribeiro (UENF), Campos dos Goytacazes, Rio de Janeiro, 28013-602, Brazil
| | - Mustansar Mubeen
- College of Plant Sciences and Technology, Huazhong Agricultural University, Wuhan, Hubei, 430070, People's Republic of China
| | - Shafaqat Ali
- Department of Environmental Sciences and Engineering, Government College University Faisalabad, Faisalabad, 38000, Pakistan.
- Department of Biological Sciences and Technology, China Medical University, Taichung, 40402, Taiwan.
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