Growth media in anaerobic fermentative processes: The underestimated potential of thermophilic fermentation and anaerobic digestion

Sulfide in engineered methanogenic systems - Friend or foe?

Sulfide ions are regarded to be toxic to microorganisms in engineered methanogenic systems (EMS), where organic substances are anaerobically converted to products such as methane, hydrogen, alcohols, and carboxylic acids. A vast body of research has addressed solutions to mitigate process disturbances associated with high sulfide levels, yet the established paradigm has drawn the attention away from the multifaceted sulfide interactions with minerals, organics, microbial interfaces and their implications for performance of EMS. This brief review brings forward sulfide-derived pathways other than toxicity and with potential significance for anaerobic organic matter degradation. Available evidence on sulfide reactions with organic matter, interventions with key microbial metabolisms, and interspecies electron transfer are critically synthesized as a guidance for comprehending the sulfide effects on EMS apart from the microbial toxicity. The outcomes identify existing knowledge gaps and specify future research needs as a step forward towards realizing the potential of sulfide-derived mechanisms in diversifying and optimizing EMS applications.

Yeasts Have Evolved Divergent Enzyme Strategies To Deconstruct and Metabolize Xylan

Together with bacteria and filamentous fungi, yeasts actively take part in the global carbon cycle. Over 100 yeast species have been shown to grow on the major plant polysaccharide xylan, which requires an arsenal of carbohydrate active enzymes. However, which enzymatic strategies yeasts use to deconstruct xylan and what specific biological roles they play in its conversion remain unclear. In fact, genome analyses reveal that many xylan-metabolizing yeasts lack expected xylanolytic enzymes. Guided by bioinformatics, we have here selected three xylan-metabolizing ascomycetous yeasts for in-depth characterization of growth behavior and xylanolytic enzymes. The savanna soil yeast Blastobotrys mokoenaii displays superior growth on xylan thanks to an efficient secreted glycoside hydrolase family 11 (GH11) xylanase; solving its crystal structure revealed a high similarity to xylanases from filamentous fungi. The termite gut-associated Scheffersomyces lignosus, in contrast grows more slowly, and its xylanase activity was found to be mainly cell surface-associated. The wood-isolated Wickerhamomyces canadensis, surprisingly, could not utilize xylan as the sole carbon source without the addition of xylooligosaccharides or exogenous xylanases or even co-culturing with B. mokoenaii, suggesting that W. canadensis relies on initial xylan hydrolysis by neighboring cells. Furthermore, our characterization of a novel W. canadensis GH5 subfamily 49 (GH5_49) xylanase represents the first demonstrated activity in this subfamily. Our collective results provide new information on the variable xylanolytic systems evolved by yeasts and their potential roles in natural carbohydrate conversion. IMPORTANCE Microbes that take part in the degradation of the polysaccharide xylan, the major hemicellulose component in plant biomass, are equipped with specialized enzyme machineries to hydrolyze the polymer into monosaccharides for further metabolism. However, despite being found in virtually every habitat, little is known of how yeasts break down and metabolize xylan and what biological role they may play in its turnover in nature. Here, we have explored the enzymatic xylan deconstruction strategies of three underexplored yeasts from diverse environments, Blastobotrys mokoenaii from soil, Scheffersomyces lignosus from insect guts, and Wickerhamomyces canadensis from trees, and we show that each species has a distinct behavior regarding xylan conversion. These findings may be of high relevance for future design and development of microbial cell factories and biorefineries utilizing renewable plant biomass.

Deciphering the contribution of microbial biomass to the properties of dissolved and particulate organic matter in anaerobic digestates

The recalcitrant structures either from substrate or microbial biomass contained in digestates after anaerobic digestion (AD) highly influence digestate valorization. To properly assess the microbial biomass contribution to the digested organic matter (OM), a combination of characterization methods and the use of various substrate types in anaerobic continuous reactors was required. The use of totally biodegradable substrates allowed detecting soluble microbial products via fluorescence spectroscopy at emission wavelengths of 420 and 460 nm while the protein-like signature was enhanced by the whey protein. During reactors' operation, a transfer of complex compounds to the dissolved OM from the particulate OM was observed through fluorescence applied on biochemical fractionation. Consequently, the fluorescence complexity index of the dissolved OM increased from 0.59-0.60 to 1.06-1.07, whereas it decreased inversely for the extractable soluble from the particulate OM from 1.16-1.19 to 0.42-0.54. Accordingly, fluorescence regional integration showed differences among reactors based on visual inspection and orthogonal partial latent structures (OPLS) analysis. Similarly, the impact of the substrate type and operation time on the particulate OM was revealed by ¹³C nuclear magnetic resonance using OPLS, providing a good model (R²X = 0.93 and Q² = 0.8) with a clear time-trend. A high signal resonated at ∼30 ppm attributed to CH₂-groups in the aliphatic chain of lipid-like structure besides carbohydrates intensities at 60-110 ppm distinguished the reactor fed with whey protein from the other, which was mostly biomass related. Indeed, this latter displayed a higher presence of peptidoglycan (δH/C: 1.6-2.0/20-25 ppm) derived from microbial biomass by ¹H-¹³C heteronuclear single-quantum coherence (HSQC) nuclear magnetic resonance. Interestingly, the sample distribution obtained by non-metric multidimensional scaling of bacterial communities resembled the attained using ¹³C NMR properties, opening new research perspectives. Overall, this study discloses the microbial biomass contribution to digestates composition to improve the OM transformation mechanism knowledge.

Chemical characterization and anaerobic treatment of bitumen fume condensate using a membrane bioreactor

Bitumen fume condensate (BFC) is a hazardous wastewater generated at asphalt reclamation and production sites. BFC contains a wide variety of potentially toxic organic pollutants that negatively affect anaerobic processes. In this study, we chemically characterized BFC produced at an industrial site and evaluated its degradation under anaerobic conditions. Analyses identified about 900 compounds including acetate, polycyclic aromatic hydrocarbons, phenolic compounds, and metal ions. We estimated the half maximal inhibitory concentrations (IC₅₀) of methanogenesis of 120, 224, and 990 mgCOD·L^-1 for three types of anaerobic biomass, which indicated the enrichment and adaptation potentials of methanogenic biomass to the wastewater constituents. We operated an AnMBR (7.0 L, 35 °C) for 188 days with a mixture of BFC, phenol, acetate, and nutrients. The reactor showed a maximum average COD removal efficiency of 87.7 ± 7.0 %, that corresponded to an organic conversion rate of 286 ± 71 mgCOD^-1·L^-1d^-1. The microbial characterization of the reactor's biomass showed the acetoclastic methanogen Methanosaeta as the most abundant microorganism (43 %), whereas the aromatic and phenol degrader Syntrophorhabdus was continuously present with abundances up to 11.5 %. The obtained results offer the possibility for the application of AnMBRs for the treatment of BFC or other petrochemical wastewater.

Methanogenic treatment of dairy wastewater: A review of current obstacles and new technological perspectives

Methanogenic treatment can effectively manage wastewater in the dairy industry. However, its treatment efficiency and stability are problematic due to the feature of wastewater. This review comprehensively summarizes the dairy wastewater characteristics and reveals the mechanisms and impacts of three critical issues in anaerobic treatment, including ammonia and long-chain fatty acid (LCFA) inhibition and trace metal (TM) deficiency. It evaluates current remedial strategies and the implementation of anaerobic membrane bioreactor (AnMBR) technology. It assesses the use of nitrogen-removed effluent return to dilute the influent for solving protein-rich dairy wastewater treatment. It explores the methodology of TM addition to dairy wastewater in accordance with microbial TM content and proliferation. It analyzes the multiple benefits of applying high-solid AnMBR to lipid-rich influent to mitigate LCFA inhibition. Finally, it proposes a promising low-carbon treatment system with enhanced bioenergy recovery, nitrogen removal, and simultaneous phosphorus recovery that could promote carbon neutrality for dairy industry wastewater treatment.

Wastewater-derived biohydrogen: Critical analysis of related enzymatic processes at the research and large scales

Organic-rich wastewater is a feasible feedstock for biohydrogen production. Numerous review on the performance of microorganisms and the diversity of their communities during a biohydrogen process were published. However, there is still no in-depth overview of enzymes for biohydrogen production from wastewater and their scale-up applications. This review aims at providing an insightful exploration of critical discussion in terms of: (i) the roles and applications of enzymes in wastewater-based biohydrogen fermentation; (ii) systematical introduction to the enzymatic processes of photo fermentation and dark fermentation; (iii) parameters that affect enzymatic performances and measures for enzyme activity/ability enhancement; (iv) biohydrogen production bioreactors; as well as (v) enzymatic biohydrogen production systems and their larger scales application. Furthermore, to assess the best applications of enzymes in biohydrogen production from wastewater, existing problems and feasible future studies on the development of low-cost enzyme production methods and immobilized enzymes, the construction of multiple enzyme cooperation systems, the study of biohydrogen production mechanisms, more effective bioreactor exploration, larger scales enzymatic biohydrogen production, and the enhancement of enzyme activity or ability are also addressed.

Thermophilic biohydrogen production strategy using agro industrial wastes: Current update, challenges, and sustainable solutions

Continuously increasing wastes management issues and the high demand of fuels to fulfill the current societal requirements is not satisfactory. In addition, severe environmental pollution caused by generated wastes and the massive consumption of fossil fuels are the main causes of global warming. In this scenario, production of hydrogen from organic wastes is a potential and one of the most feasible alternatives to resolve these issues. However, sensitivity of H₂ production at higher temperature and lack of potential substrates are the main issues which are strongly associated with such kinds of biofuels. Therefore, the present review is targeted towards the evaluation and enhancement of thermophilic biohydrogen production using organic, cellulosic wastes as promising bioresources. This review discusses about the current status, development in the area of thermophilic biohydrogen production wherein organic wastes as key substrate are being employed. The combinations of suitable organic and cellulose rich substrates, thermo-tolerant microbes, high enzymes stability may support to enhance the biohydrogen production, significantly. Further, various factors which may significantly contribute to enhance biohydrogen production have been discussed thoroughly in reference to the thermophilic biohydrogen production technology. Additionally, existing obstacles such as unfavorable thermophilic biohydrogen pathways, inefficiency of thermophilic microbiomes, genetic modifications, enzymes stability have been discussed in context to the possible limitations of thermophilic biohydrogen production strategy. Structural and functional microbiome analysis, fermentation pathway modifications via genetic engineering and the application of nanotechnology to enhance the thermophilic biohydrogen production have been discussed as the future prospective.

Characterization of trace metal impact on organic acid metabolism and functional microbial community in treating dairy processing wastewater with thermophilic anaerobic membrane bioreactor

The anaerobic digestion (AD) of dairy processing wastewater (DPW) to produce bioenergy is considered promising but also associated with the possibility of an unbalanced organic matter and trace metal (TM) content. In this study, the TM content and its impact on AD were determined in an anaerobic membrane bioreactor operated to treat DPW. The results indicated that a deficiency in TMs resulted in the slow deterioration of the process, reducing biogas production, disrupting the buffer system, and the massive accumulation of organic acid. The deficiency of Co/Ni was significant, while iron fluctuated due to microbial and chemical effects. Syntrophic propionate oxidizing bacteria and methanogen were the main groups suppressed under the TM deficient environment, resulting in AD failure. No inhibitory effect on the lactic acid metabolism was observed. Hence, supplying theoretical TM dosage to DPW was necessary to realize the efficient and stable AD process and robust microbial community.

Volatile fatty acids production from waste streams by anaerobic digestion: A critical review of the roles and application of enzymes

Volatile fatty acids (VFAs) produced from organic-rich wastewater by anaerobic digestion attract attention due to the increasing volatile fatty acids market, sustainability and environmentally friendly characteristics. This review aims to give an overview of the roles and applications of enzymes, a biocatalyst which plays a significant role in anaerobic digestion, to enhance volatile fatty acids production. This paper systematically overviewed: (i) the enzymatic pathways of VFAs formation, competition, and consumption; (ii) the applications of enzymes in VFAs production; and (iii) feasible measures to boost the enzymatic processes. Furthermore, this review presents a critical evaluation on the major obstacles and feasible future research directions for the better applications of enzymatic processes to promote VFAs production from wastewater.

Characterization of microbial communities in anaerobic acidification reactors fed with casein and/or lactose

Abstract

Protein-rich agro-industrial waste streams are high in organic load and represent a major environmental problem. Anaerobic digestion is an established technology to treat these streams; however, retardation of protein degradation is frequently observed when carbohydrates are present. This study investigated the mechanism of the retardation by manipulating the carbon source fed to a complex anaerobic microbiota and linking the reactor performance to the variation of the microbial community. Two anaerobic acidification reactors were first acclimated either to casein (CAS reactor) or lactose (LAC reactor), and then fed with mixtures of casein and lactose. Results showed that when lactose was present, the microbial community acclimated to casein shifted from mainly Chloroflexi to Proteobacteria and Firmicutes, the degree of deamination in the CAS reactor decreased from 77 to 15%, and the VFA production decreased from 75 to 34% of the effluent COD. A decrease of 75% in protease activity and 90% in deamination activity of the microbiota was also observed. The microorganisms that can ferment both proteins and carbohydrates were predominant in the microbial community, and from a thermodynamical point of view, they consumed carbohydrates prior to proteins. The frequently observed negative effect of carbohydrates on protein degradation can be mainly attributed to the substrate preference of these populations.

Keypoints

• The presence of lactose shifted the microbial community and retarded anaerobic protein degradation.

• Facultative genera were dominant in the presence and absence of lactose.

• Substrate-preference caused retardation of anaerobic protein degradation.

Supplementary Information

The online version contains supplementary material available at 10.1007/s00253-022-12132-5.

Degrading chlorinated aliphatics by reductive dechlorination of groundwater samples from the Santa Susana Field Laboratory

Microbial reductive dechlorination is one of the chosen methods for remediation of chlorinated compounds in anaerobic environments. In this study we examined the degradation of chlorinated aliphatics in groundwater samples from the Santa Susana Field Laboratory (SSFL) containing a concentration of 0.228 mM trichloroethylene (TCE) and 0.279 mM 1,2 dichloroethylene (DCE). We tested the influence of adding different carbon sources on the dechlorinating activity in batch cultures with and without dechlorinating bacteria. In-situ microcosms were established using SSFL groundwater supplemented with EVO (5%) (vol/vol) SRS emulsion and with or without species of Dehalocococcoides (DCB-1, DCB-2 or DCB-3). Emulsified vegetable oil (EVO) gave the highest dechlorinating activity with DCB-1 added compared to any other substrate addition tested. All three bacterial cultures tested had significant dechlorinating activities while the native populations in the SSFL groundwater samples only showed limited degradation of trichloroethylene into intermediates in the form of DCE, vinyl chloride and ethane. The conversion of chlorinated ethylenes (CEs) was optimal in the bioreactors amended with DCB-1 followed by DCB-2, and DCB-3 all supplemented with EVO. We further analyzed the TCE degradation first order kinetics in batch cultures and found that the culture with DCB-1 supplemented with EVO showed 43.59% and 51.38% increased degradation rate compared to the same condition with cultures of DCB-2 or DCB-3 added. The microcosm studies further showed that with DCB-1 and EVO, reductive dechlorination of TCE in the SSFL converted 90% of the input TCE to ethane with a degradation rate of 0.0039 mM/day.

Enhanced anaerobic digestion of tar solution from rice husk thermal gasification with hybrid upflow anaerobic sludge-biochar bed reactor

Tar generated as a by-product during biomass gasification contains a high concentration of refractory organic matters. In this study, a hybrid upflow anaerobic sludge-biochar bed reactor was established for tar treatment, and the methane yield was 120-154 NmL-CH₄/g-COD_inf, 20-30% higher than the control reactor. COD removal and methane production significantly decreased in both reactors when the influent tar concentration was doubled from 4954 mg-COD/L to 9964 mg-COD/L. When the influent concentration was reduced, the biochar packed reactor showed a faster recovery. Batch tests confirmed that higher tar concentration inhibited methane production and induced longer lagphase. Biochar addition effectively relieved the inhibition and prolonged the retention of organic matters. SEM observation and 16S rRNA analysis suggested that biochar also acted as the microbe's carrier, and promoted the growth of some microbes. The results of this study provide new ideas for tar treatment.

Identifying targets for increased biogas production through chemical and organic matter characterization of digestate from full-scale biogas plants: what remains and why?

Background

This study examines the destiny of macromolecules in different full-scale biogas processes. From previous studies it is clear that the residual organic matter in outgoing digestates can have significant biogas potential, but the factors dictating the size and composition of this residual fraction and how they correlate with the residual methane potential (RMP) are not fully understood. The aim of this study was to generate additional knowledge of the composition of residual digestate fractions and to understand how they correlate with various operational and chemical parameters. The organic composition of both the substrates and digestates from nine biogas plants operating on food waste, sewage sludge, or agricultural waste was characterized and the residual organic fractions were linked to substrate type, trace metal content, ammonia concentration, operational parameters, RMP, and enzyme activity.

Results

Carbohydrates represented the largest fraction of the total VS (32–68%) in most substrates. However, in the digestates protein was instead the most abundant residual macromolecule in almost all plants (3–21 g/kg). The degradation efficiency of proteins generally lower (28–79%) compared to carbohydrates (67–94%) and fats (86–91%). High residual protein content was coupled to recalcitrant protein fractions and microbial biomass, either from the substrate or formed in the degradation process. Co-digesting sewage sludge with fat increased the protein degradation efficiency with 18%, possibly through a priming mechanism where addition of easily degradable substrates also triggers the degradation of more complex fractions. In this study, high residual methane production (> 140 L CH₄/kg VS) was firstly coupled to operation at unstable process conditions caused mainly by ammonia inhibition (0.74 mg NH₃-N/kg) and/or trace element deficiency and, secondly, to short hydraulic retention time (HRT) (55 days) relative to the slow digestion of agricultural waste and manure.

Conclusions

Operation at unstable conditions was one reason for the high residual macromolecule content and high RMP. The outgoing protein content was relatively high in all digesters and improving the degradation of proteins represents one important way to increase the VS reduction and methane production in biogas plants. Post-treatment or post-digestion of digestates, targeting microbial biomass or recalcitrant protein fractions, is a potential way to achieve increased protein degradation.

Supplementary Information

The online version contains supplementary material available at 10.1186/s13068-022-02103-3.

Quantitative assessment of exposure to fecal contamination in urban environment across nine cities in low-income and lower-middle-income countries and a city in the United States

BACKGROUND

During 2014 to 2019, the SaniPath Exposure Assessment Tool, a standardized set of methods to evaluate risk of exposure to fecal contamination in the urban environment through multiple exposure pathways, was deployed in 45 neighborhoods in ten cities, including Accra and Kumasi, Ghana; Vellore, India; Maputo, Mozambique; Siem Reap, Cambodia; Atlanta, United States; Dhaka, Bangladesh; Lusaka, Zambia; Kampala, Uganda; Dakar, Senegal.

OBJECTIVE

Assess and compare risk of exposure to fecal contamination via multiple pathways in ten cities.

METHODS

In total, 4053 environmental samples, 4586 household surveys, 128 community surveys, and 124 school surveys were collected. E. coli concentrations were measured in environmental samples as an indicator of fecal contamination magnitude. Bayesian methods were used to estimate the distributions of fecal contamination concentration and contact frequency. Exposure to fecal contamination was estimated by the Monte Carlo method. The contamination levels of ten environmental compartments, frequency of contact with those compartments for adults and children, and estimated exposure to fecal contamination through any of the surveyed environmental pathways were compared across cities and neighborhoods.

RESULTS

Distribution of fecal contamination in the environment and human contact behavior varied by city. Universally, food pathways were the most common dominant route of exposure to fecal contamination across cities in low-income and lower-middle-income countries. Risks of fecal exposure via water pathways, such as open drains, flood water, and municipal drinking water, were site-specific and often limited to smaller geographic areas (i.e., neighborhoods) instead of larger areas (i.e., cities).

CONCLUSIONS

Knowledge of the relative contribution to fecal exposure from multiple pathways, and the environmental contamination level and frequency of contact for those "dominant pathways" could provide guidance for Water, Sanitation, and Hygiene (WASH) programming and investments and enable local governments and municipalities to improve intervention strategies to reduce the risk of exposure to fecal contamination.

Improvement of sewage sludge anaerobic digestion through synergistic effect combined trace elements enhancer with enzyme pretreatment and microbial community response

In this study, a double E strategy (enzymes and enhancer) characterized by high efficiency for enhancing sewage sludge anaerobic digestion (AD) is proposed. This strategy combines addition of trace elements (TEs) enhancer and enzyme pretreatment, inducing a synergistic effect on AD, and it is more effective and economical compared with TEs addition or enzyme pretreatment in isolation. When adding 400 U/g cocktail enzymes and 1.24% trance elements enhancers, the cumulative methane production and the maximum daily methane increased yield by 45.29% and 84.7%, respectively. According to microbial community analysis, the double E strategy significantly motivate the growth of acetogens and protein fermenting bacterium. The relative abundance of Fermentimonas and Lutispora increased by 6.15% and 5.4%, respectively. Archaeal community analysis and changes in the mcrA gene abundance demonstrate enrichment of hydrogenotrophic methanogens, with the methanogens exhibiting high vitalities and stress resistance. The double E strategy could be a promising way to improve industrial sewage sludge AD efficiency.

Revealing the mechanisms of alkali-based magnetic nanosheets enhanced hydrogen production from dark fermentation: Comparison between mesophilic and thermophilic conditions

In the present study, a dark fermentation system inoculated with mixed culture bacteria (MCB) was developed using prepared alkali-based magnetic nanosheets (AMNSs) to facilitate biohydrogen (BioH₂) production. The highest BioH₂ yields of 232.8 ± 8.5 and 150.3 ± 4.8 mL/g glucose were observed at 100 (mesophilic condition) and 400 (thermophilic condition) mg/L AMNSs groups, which were 65.4% and 43.3%, respectively, above the 0 mg/L AMNSs group. The fermentation pathway revealed that AMNSs enhanced the butyrate-type metabolic pathway and the corresponding nicotinamide adenine dinucleotides (NADHand NAD⁺) ratio, and hydrogenase activity was enhanced in mesophilic fermentation. The interaction of AMNSs and MCB suggested that AMNSs could assist in electron transfer and that the released metal elements might be responsible for elevated hydrogenase activity. AMNSs also promoted the evolution of the dominant microbial community and altered the content of extracellular polymers, leading to increased production of BioH₂.

Volatile Fatty Acids (VFA) Production from Wastewaters with High Salinity—Influence of pH, Salinity and Reactor Configuration

The hydrocarbon-based economy is moving at a large pace to a decarbonized sustainable bioeconomy based on biorefining all types of secondary carbohydrate-based raw materials. In this work, 50 g L−1 in COD of a mixture of food waste, brine and wastewater derived from a biodiesel production facility were used to produce organic acids, important building-blocks for a biobased industry. High salinity (12–18 g L−1), different reactors configuration operated in batch mode, and different initial pH were tested. In experiment I, a batch stirred reactor (BSR) at atmospheric pressure and a granular sludge bed column (GSBC) were tested with an initial pH of 5. In the end of the experiment, the acidification yield (ηa) was similar in both reactors (22–24%, w/w); nevertheless, lactic acid was in lower concentrations in BSR (6.3 g L−1 in COD), when compared to GSBC (8.0 g L−1 in COD), and valeric was the dominant acid, reaching 17.3% (w/w) in the BSR. In experiment II, the BSR and a pressurized batch stirred reactor (PBSR, operated at 6 bar) were tested with initial pH 7. The ηa and the VFA concentration were higher in the BSR (46%, 22.8 g L−1 in COD) than in the PBSR (41%, 20.3 g/L in COD), and longer chain acids were more predominant in BSR (24.4% butyric, 6.7% valeric, and 6.2% caproic acids) than in PBSR (23.2%, 6.2%, and 4.2%, respectively). The results show that initial pH of 7 allows achieving higher ηa, and the BSR presents the most suitable reactor among tested configurations to produce VFA from wastes/wastewaters with high salinity.

The role of growth media on composition, bioconversion and susceptibility for mild thermal pre-treatment of waste activated sludge

The highly variable characteristics of waste activated sludge (WAS) hinder the comparison of experimental results on WAS bioconversion between the different studies that use excess sludge from different origin. Sludge grown under laboratory conditions with synthetic wastewater as feed showed high resistance to commonly applied pre-treatment techniques, such as thermal pre-treatment. However, a distinctly higher bioconversion of this sludge was recorded compared to WAS from a full-scale wastewater treatment plant (WWTP). The observed results casted concern on the suitability of the experimental laboratory-based data for practice. The physicochemical and biochemical characteristics of both WAS and lab-grown sludge are dependent on the wastewater characteristics or growth media on which the sludges were grown. The objective of this study was to formulate a growth medium that results into a lab-grown sludge which shows high similarity to the WAS coming from a specific full-scale WWTP in response to a pre-treatment technique. More specifically, in this study we targeted the formation of slowly-biodegradable lab-grown sludge that is similarly responsive to mild thermal pre-treatment with H₂O₂ addition. By comparing real and synthetic wastewaters, we discussed the various wastewater constituents that may lead to a higher degree of recalcitrance of the produced sludge. We then formulated a growth medium, which was fed to a lab-scale activated sludge reactor and evaluated the nutrient removal capacity, as well as the characteristics of the cultivated sludge before and after pre-treatment. Finally, the growth medium was modified to provoke a change in both the bioconversion and in the response to mild thermal pre-treatment. The growth medium proposed in this study resulted in a slowly-biodegradable sludge (195 ± 3.7 NLCH₄/kgVS_added) that after thermal pre-treatment resulted in an increase in methane production of 9 %, which was similar to the WAS coming from the full-scale WWTP. It was concluded that not only the bioconversion but also the response to mild thermal pre-treatment of lab-grown sludge was determined by the composition of the growth media.

CAZyme prediction in ascomycetous yeast genomes guides discovery of novel xylanolytic species with diverse capacities for hemicellulose hydrolysis

BACKGROUND

Ascomycetous yeasts from the kingdom fungi inhabit every biome in nature. While filamentous fungi have been studied extensively regarding their enzymatic degradation of the complex polymers comprising lignocellulose, yeasts have been largely overlooked. As yeasts are key organisms used in industry, understanding their enzymatic strategies for biomass conversion is an important factor in developing new and more efficient cell factories. The aim of this study was to identify polysaccharide-degrading yeasts by mining CAZymes in 332 yeast genomes from the phylum Ascomycota. Selected CAZyme-rich yeasts were then characterized in more detail through growth and enzymatic activity assays.

RESULTS

The CAZyme analysis revealed a large spread in the number of CAZyme-encoding genes in the ascomycetous yeast genomes. We identified a total of 217 predicted CAZyme families, including several CAZymes likely involved in degradation of plant polysaccharides. Growth characterization of 40 CAZyme-rich yeasts revealed no cellulolytic yeasts, but several species from the Trichomonascaceae and CUG-Ser1 clades were able to grow on xylan, mixed-linkage β-glucan and xyloglucan. Blastobotrys mokoenaii, Sugiyamaella lignohabitans, Spencermartinsiella europaea and several Scheffersomyces species displayed superior growth on xylan and well as high enzymatic activities. These species possess genes for several putative xylanolytic enzymes, including ones from the well-studied xylanase-containing glycoside hydrolase families GH10 and GH30, which appear to be attached to the cell surface. B. mokoenaii was the only species containing a GH11 xylanase, which was shown to be secreted. Surprisingly, no known xylanases were predicted in the xylanolytic species Wickerhamomyces canadensis, suggesting that this yeast possesses novel xylanases. In addition, by examining non-sequenced yeasts closely related to the xylanolytic yeasts, we were able to identify novel species with high xylanolytic capacities.

CONCLUSIONS

Our approach of combining high-throughput bioinformatic CAZyme-prediction with growth and enzyme characterization proved to be a powerful pipeline for discovery of novel xylan-degrading yeasts and enzymes. The identified yeasts display diverse profiles in terms of growth, enzymatic activities and xylan substrate preferences, pointing towards different strategies for degradation and utilization of xylan. Together, the results provide novel insights into how yeast degrade xylan, which can be used to improve cell factory design and industrial bioconversion processes.

Comparison of mesophilic and thermophilic dark fermentation with nickel ferrite nanoparticles supplementation for biohydrogen production

In this work, nickel ferrite nanoparticles (NiFe₂O₄ NPs) was prepared to improve hydrogen (H₂) production by dark fermentation. Moderate amounts (50-200 mg/L) promoted H₂ generation, while excess NiFe₂O₄ NPs (over 400 mg/L) lowered H₂ productivity. The highest H₂ yields of 222 and 130 mL/g glucose were obtained in the 100 mg/L (37 °C) and 200 mg/L NiFe₂O₄ NPs (55 °C) groups, respectively, and the values were 38.6% and 28.3% higher than those in the control groups (37 °C and 55 °C). Soluble metabolites showed that NiFe₂O₄ NPs enhanced the butyrate pathway, corresponding to the increased abundance of Clostridium butyricum in mesophilic fermentation. The endocytosis of NiFe₂O₄ NPs indicated that the released iron and nickel favored ferredoxin and hydrogenase synthesis and activity and that NiFe₂O₄ NPs could act as carriers in intracellular electron transfer. The NPs also optimized microbial community structure and increased the levels of extracellular polymeric substances, leading to increased H₂ production.

Improvement of Biogas Quality and Quantity for Small-Scale Biogas-Electricity Generation Application in off-Grid Settings: A Field-Based Study

Small-scale electrical power generation (<100 kW) from biogas plants to provide off-grid electricity is of growing interest. Currently, gas engines are used to meet this demand. Alternatively, more efficient small-scale solid oxide fuel cells (SOFCs) can be used to enhance electricity generation from small-scale biogas plants. Most electricity generators require a constant gas supply and high gas quality in terms of absence of impurities like H2S. Therefore, to efficiently use the biogas from existing decentralized anaerobic digesters for electricity production, higher quality and stable biogas flow must be guaranteed. The installation of a biogas upgrading and buffer system could be considered; however, the cost implication could be high at a small scale as compared to locally available alternatives such as co-digestion and improved digester operation. Therefore, this study initially describes relevant literature related to feedstock pre-treatment, co-digestion and user operational practices of small-scale digesters, which theoretically could lead to major improvements of anaerobic digestion process efficiency. The theoretical preamble is then coupled to the results of a field study, which demonstrated that many locally available resources and user practices constitute frugal innovations with potential to improve biogas quality and digester performance in off-grid settings.

Advances towards understanding long chain fatty acids-induced inhibition and overcoming strategies for efficient anaerobic digestion process

The inhibition of the anaerobic digestion (AD) process, caused by long chain fatty acids (LCFAs), has been considered as an important issue in the wastewater treatment sector. Proper understanding of mechanisms behind the inhibition is a must for further improvements of the AD process in the presence of LCFAs. Through analyzing recent literature, this review extensively describes the mechanism of LCFAs degradation, during AD. Further, a particular focus was directed to the key parameters which could affect such process. Besides, this review highlights the recent research efforts in mitigating LCFAs-caused inhibition, through the addition of commonly used additives such as cations and natural adsorbents. Specifically, additives such as bentonite, cation-based adsorbents, as well as zeolite and other natural adsorbents for alleviating the LCFAs-induced inhibition are discussed in detail. Further, panoramic evaluations for characteristics, various mechanisms of reaction, merits, limits, recommended doses, and preferred conditions for each of the different additives are provided. Moreover, the potential for increasing the methane production via pretreatment using those additives are discussed. Finally, we provide future horizons for the alternative materials that can be utilized, more efficiently, for both mitigating LCFAs-based inhibition and boosting methane potential in the subsequent digestion of LCFA-related wastes.

Nutrient augmentation enhances biogas production from sorghum mono-digestion

This study investigated the effects of the addition of micro- (Fe, Co, Ni, and Mo) and macro-(Sulfur) nutrients on mono-digestion of sorghum under mesophilic conditions. A continuous stirred-tank reactor was operated for more than 420 days under seven different experimental conditions. The experimental results showed poor performance for methane production and process stability without nutrient supplementation. Serious deficiencies in Co and S were confirmed by nutrient analysis of dry sorghum and digestate. Nutrient augmentation efficiently enhanced methane production and volatile fatty acid (VFA) removal. Methane production reached 223 mL-CH₄/g-VS, almost matching the yield predicted by biochemical methane potential (BMP) test. S was demonstrated to have a critical effect on metal availability in the digester. Consequently, to maintain stable methane fermentation, suitable supplementations of S and Co are recommended for anaerobic sorghum mono-digestion.

Enhancing Phenol Conversion Rates in Saline Anaerobic Membrane Bioreactor Using Acetate and Butyrate as Additional Carbon and Energy Sources

Phenolic industrial wastewater, such as those from coal gasification, are considered a challenge for conventional anaerobic wastewater treatment systems because of its extreme characteristics such as presence of recalcitrant compounds, high toxicity, and salinity. However, anaerobic membrane bioreactors (AnMBRs) are considered of potential interest since they retain all micro-organism that are required for conversion of the complex organics. In this study, the degradation of phenol as main carbon and energy source (CES) in AnMBRs at high salinity (8.0 g Na⁺⋅L^–1) was evaluated, as well as the effect of acetate and an acetate-butyrate mixture as additional CES on the specific phenol conversion rate and microbial community structure. Three different experiments in two lab-scale (6.5 L) AnMBRs (35°C) were conducted. The first reactor (R1) was fed with phenol as the main CES, the second reactor was fed with phenol and either acetate [2 g COD⋅L^–1], or a 2:1 acetate-butyrate [2 g COD⋅L^–1] mixture as additional CES. Results showed that phenol conversion could not be sustained when phenol was the sole CES. In contrast, when the reactor was fed with acetate or an acetate-butyrate mixture, specific phenol conversion rates of 115 and 210 mgPh⋅gVSS^–1 d^–1, were found, respectively. The syntrophic phenol degrader Syntrophorhabdus sp. and the acetoclastic methanogen Methanosaeta sp. were the dominant bacteria and archaea, respectively, with corresponding relative abundances of up to 63 and 26%. The findings showed that dosage of additional CES allowed the development of a highly active phenol-degrading biomass, potentially improving the treatment of industrial and chemical wastewaters.

Fouling Mitigation by Cationic Polymer Addition into a Pilot-Scale Anaerobic Membrane Bioreactor Fed with Blackwater

Cationic polymers have proven to be suitable flux enhancers (FEs) in large-scale aerobic membrane bioreactors (MBRs), whereas in anaerobic membrane bioreactors (AnMBRs) research is scarce, and so far, only done at lab-scale. Results from MBRs cannot be directly translated to AnMBRs because the extent and nature of membrane fouling under anaerobic and aerobic conditions are different. Our research focused on the long-term effect of dosing the cationic polymer Adifloc KD451 to a pilot AnMBR, fed with source-separated domestic blackwater. A single dosage of Adifloc KD451 at 50 mg L^-1 significantly enhanced the filtration performance in the AnMBR, revealed by a decrease in both fouling rate and total filtration resistance. Nevertheless, FE addition had an immediate negative effect on the specific methanogenic activity (SMA), but this was a reversible process that had no adverse effect on permeate quality or chemical oxygen demand (COD) removal in the AnMBR. Moreover, the FE had a long-term positive effect on AnMBR filtration performance and sludge filterability. These findings indicate that dosing Adifloc KD451 is a suitable strategy for fouling mitigation in AnMBRs because it led to a long-term improvement in filtration performance, while having no significant adverse effects on permeate quality or COD removal.

Efficient biosynthesis of polysaccharide welan gum in heat shock protein-overproducing Sphingomonas sp. via temperature-dependent strategy

Cell growth and product formation are two critical processes in polysaccharide welan biosynthesis, but the conflict between them is often encountered. In this study, a temperature-dependent strategy was designed for two-stage welan production through overexpressing heat shock proteins in Sphingomonas sp. The first stage was cell growth phase with higher TCA cycle activity at 42 °C; the second stage was welan formation phase with higher precursor synthesis pathway activity at 37 °C. The highest welan concentration 37.5 g/L was achieved after two-stage process. Ultimately, this strategy accumulated welan yield of 79.2 g/100 g glucose and productivity of 0.62 g/L/h at 60 h, which were the best reported results so far. The duration of fermentation was shortened. Besides, rheological behavior of welan gum solutions remained stable at wide range of temperature, pH, and NaCl. These results indicated that this approach efficiently improved welan synthesis.

Simultaneous synergistic effects of graphite addition and co-digestion of food waste and cow manure: Biogas production and microbial community

The effects of graphite on the anaerobic digestion of food waste (FW), cow manure (CM) and its mixture (FW/CM) via batch experiments under mesophilic conditions have been investigated in this study. Maximum biogas production with graphite addition for FW + 1 g/L, CM + 1.5 g/L and FW/CM + 0.75 g/L are 1128.46, 829.6 and 1471.1 mL/gVS respectively. Additionally, this study investigates the link between microbial community structure and biogas production when graphite addition of anaerobic digester was conducted. Based on 16S rRNA gene amplicon sequencing results, Aminiphilus (13-14%), Actinobaculum (13-15%) and Clostridium (12-18%) were the predominant bacterial genera in graphite-added FW, CM and FW/CM reactors, respectively. Comparatively higher biogas production of FW/CM synergistically affected by abundances of Clostridium as well as co-digestion in this anaerobic digestion setup. Methanosaeta was the most abundant methanogen in the graphite added digesters; however, the relative abundance of these genera was different.

Effect of Cobalt, Nickel, and Selenium/Tungsten Deficiency on Mesophilic Anaerobic Digestion of Chemically Defined Soluble Organic Compounds

Trace elements (TEs) are vital for anaerobic digestion (AD), due to their role as cofactors in many key enzymes. The aim of this study was to evaluate the effects of specific TE deficiencies on mixed microbial communities during AD of soluble polymer-free substrates, thus focusing on AD after hydrolysis. Three mesophilic (37 °C) continuous stirred-tank biogas reactors were depleted either of Co, Ni, or a combination of Se and W, respectively, by discontinuing their supplementation. Ni and Se/W depletion led to changes in methane kinetics, linked to progressive volatile fatty acid (VFA) accumulation, eventually resulting in process failure. No significant changes occurred in the Co-depleted reactor, indicating that the amount of Co present in the substrate in absence of supplementation was sufficient to maintain process stability. Archaeal communities remained fairly stable independent of TE concentrations, while bacterial communities gradually changed with VFA accumulation in Ni- and Se-/W-depleted reactors. Despite this, the communities remained relatively similar between these two reactors, suggesting that the major shifts in composition likely occurred due to the accumulating VFAs. Overall, the results indicate that Ni and Se/W depletion primarily lead to slower metabolic activities of methanogenic archaea and their syntrophic partners, which then has a ripple effect throughout the microbial community due to a gradual accumulation of intermediate fermentation products.

Overview of key operation factors and strategies for improving fermentative volatile fatty acid production and product regulation from sewage sludge

In recent years, volatile fatty acid (VFA) production through anaerobic fermentation of sewage sludge, instead of methane production, has been regarded as a high-value and promising roadmap for sludge stabilization and resource recovery. This review first presents the effects of some essential factors that influence VFA production and composition. In the second part, we present an extensive analysis of conventional pretreatment and co-fermentation strategies ultimately addressed to improving VFA production and composition. Also, the effectiveness of these approaches is summarized in terms of sludge degradation, hydrolysis rate, and VFA production and composition. According to published studies, it is concluded that some pretreatments such as alkaline and thermal pretreatment are the most effective ways to enhance VFA production from sewage sludge. The possible reasons for the improvement of VFA production by different methods are also discussed. Finally, this review also highlights several current technical challenges and opportunities in VFA production with spectrum control, and further related research is proposed.

Essential regulators of iron chemical speciation distributions in anaerobic digestion of pretreated food waste: Organic volatile fatty acids or inorganic acid radicals?

In this work, a 30-days batched mesophilic assay on pretreated food waste (PFW) under different inoculum/substrate (I/S) ratios (1:5, 1:2, 1:1, 2:1, 4:1 and 1:0) was carried out, to target the most important parameters in AD matrix on regulating iron (Fe) chemical speciation. Correlation coefficients were calculated within four Fe chemical forms and AD parameters of pH, volatile fatty acids (VFAs), inorganic acid radicals (IARs), and alkalinity. Results showed that IARs were not key factors on regulating Fe speciation. Without acidification, IARs showed weak correlations (coefficients < 0.40) with Fe chemical dynamics while other parameters showed stronger correlations (coefficients ≥ 0.60). Under acidification, VFAs initiated the conversion of exchangeable Fe into water soluble fraction. Residual fraction might play important role in regulating Fe shifting to more bioavailable states.

Enhanced fermentative hydrogen production from industrial wastewater using mixed culture bacteria incorporated with iron, nickel, and zinc-based nanoparticles

The present study assessed the efficiency of utilizing mixed culture bacteria (MCB) incorporated with individual nanoparticles (NPs), i.e., hematite (α-Fe₂O₃), nickel oxide (NiO), and zinc oxide (ZnO), dual NPs (α-Fe₂O₃ + NiO, α-Fe₂O₃ + ZnO, and NiO + ZnO), and multi-NPs (α-Fe₂O₃ + NiO + ZnO) for hydrogen production (HP) from industrial wastewater containing mono-ethylene glycol (MEG). When MCB was individually supplemented with α-Fe₂O₃ (200 mg/L), NiO (20 mg/L), and ZnO NPs (10 mg/L), HP improved significantly by 41, 30, and 29%, respectively. Further, key enzymes associated with MEG metabolism, such as alcohol dehydrogenase (ADH), aldehyde dehydrogenase (ALDH), and hydrogenase (hyd), were rapidly and substantially enhanced in the medium. NiO and ZnO NPs notably promoted ADH and ALDH activities, respectively, while α-Fe₂O₃ exhibited superior impact on hyd activity. Maximum hydrogen production rate was concomitant with higher acetic acid production and lower residual acetaldehyde and ethanol. HP using MCB supplemented with individual NiO (20 mg/L) and ZnO NPs (10 mg/L) further improved by 8.0%-14% when dual and multi-NPs were used; the highest HP was recorded when multi-NPs were used. In addition, NPs incorporation resulted in substantial increase in the relative abundance of Clostridiales (belonging to family Clostridiaceae; > 83%). Overall, this study provides significant insights into the impact of NPs on hydrogen production from MEG-contaminated wastewater.

Construction of consolidated bio-saccharification biocatalyst and process optimization for highly efficient lignocellulose solubilization

BACKGROUND

The industrial conversion of biomass to high-value biofuels and biochemical is mainly restricted by lignocellulose solubilization. Consolidated bio-saccharification (CBS) is considered a promising process for lignocellulose solubilization depending on whole-cell biocatalysts that simultaneously perform effective cellulase production and hydrolysis. However, it usually takes a long time to reach a high saccharification level using the current CBS biocatalyst and process.

RESULTS

To promote the saccharification efficiency and reduce the cost, a Clostridium thermocellum recombinant strain ∆pyrF::KBm was constructed as a new CBS biocatalyst in this study. The key CBS factors, including the medium, inoculum size and cultivation, and substrate load, were investigated and optimized. The saccharification process was also stimulated by adding free hemicellulases, suggesting the need to further enhance hemicellulase activity of the whole-cell catalyst. Under the optimal conditions, the CBS process was shortened by 50% with pretreated wheat straw as the substrate. The sugar yield reached 0.795 g/g and the saccharification level was 89.3%.

CONCLUSIONS

This work provided a new biocatalyst and an optimized process of CBS and confirmed that CBS is a feasible strategy for cost-efficient solubilization of lignocellulose, which will greatly promote the industrial utilization of lignocellulosic biomass.

Biohydrogen production under hyper salinity stress by an anaerobic sequencing batch reactor with mixed culture

BACKGROUND

This study investigated the effect of organic loading rate (OLR) and NaCl concentration on biohydrogen production by preheated anaerobic sludge in a lab scale anaerobic sequencing batch reactor (ASBR) fed with glucose during long time operation.

METHODS

During ASBR operation, the OLR was increased in steps from 0.5 to 5 g glucose/L.d and NaCl addition started at an OLR of 5 g glucose/L.d, to obtain NaCl concentrations in the reactor in the range of 0.5-30 g/L.

RESULTS

With an increasing OLR from 0.5 to 5 g glucose/L.d, the biohydrogen yield increased and reached 0.8 ± 0.4 mol H₂/mol glucose at an OLR of 5 g glucose/L.d. A NaCl concentration of 0.5 g/L resulted in a higher yield of biohydrogen (1.1 ± 0.2 mol H₂/mol glucose). Concentrations above 0.5 g/L NaCl led to decreasing biohydrogen yield and the lowest yield (0.3 ± 0.1 mol H₂/mol glucose) was obtained at 30 g/L of NaCl. The mass balance errors for C, H, and O in all constructed stoichiometric reactions were below 5%.

CONCLUSIONS

The modified Monod model indicated that r (H2)max and Ccrit values were 23.3 mL H2/g VSS/h and 119.9 g/L, respectively. Additionally, ASBR operation at high concentrations of NaCl shifted the metabolic pathway from acidogenic toward solventogenic.

Dynamics of a Perturbed Microbial Community during Thermophilic Anaerobic Digestion of Chemically Defined Soluble Organic Compounds

Knowledge of microbial community dynamics in relation to process perturbations is fundamental to understand and deal with the instability of anaerobic digestion (AD) processes. This study aims to investigate the microbial community structure and function of a thermophilic AD process, fed with a chemically defined substrate, and its association with process performance stability. Next generation amplicon sequencing of 16S ribosomal RNA (rRNA) genes revealed that variations in relative abundances of the predominant bacterial species, Defluviitoga tunisiensis and Anaerobaculum hydrogeniformans, were not linked to the process performance stability, while dynamics of bacterial genera of low abundance, Coprothermobacter and Defluviitoga (other than D. tunisiensis), were associated with microbial community function and process stability. A decrease in the diversity of the archaeal community was observed in conjunction with process recovery and stable performance, implying that the high abundance of specific archaeal group(s) contributed to the stable AD. Dominance of hydrogenotrophic Methanoculleus particularly corresponded to an enhanced microbial acetate and propionate turnover capacity, whereas the prevalence of hydrogenotrophic Methanothermobacter and acetoclastic Methanosaeta was associated with instable AD. Acetate oxidation via syntrophic interactions between Coprothermobacter and Methanoculleus was potentially the main methane-formation pathway during the stable process. We observed that supplementation of Se and W to the medium improved the propionate turnover by the thermophilic consortium. The outcomes of our study provided insights into the community dynamics and trace element requirements in relation to the process performance stability of thermophilic AD.

Bioaugmentation with Mixed Hydrogen-Producing Acetogen Cultures Enhances Methane Production in Molasses Wastewater Treatment

Hydrogen-producing acetogens (HPA) have a transitional role in anaerobic wastewater treatment. Thus, bioaugmentation with HPA cultures can enhance the chemical oxygen demand (COD) removal efficiency and CH4 yield of anaerobic wastewater treatment. Cultures with high degradation capacities for propionic acid and butyric acid were obtained through continuous subculture in enrichment medium and were designated as Z08 and Z12. Bioaugmentation with Z08 and Z12 increased CH4 production by glucose removal to 1.58. Bioaugmentation with Z08 and Z12 increased the COD removal rate in molasses wastewater from 71.60% to 85.84%. The specific H2 and CH4 yields from COD removal increased by factors of 1.54 and 1.63, respectively. Results show that bioaugmentation with HPA-dominated cultures can improve CH4 production from COD removal. Furthermore, hydrogen-producing acetogenesis was identified as the rate-limiting step in anaerobic wastewater treatment.