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Wang Y, Niu Y, Ye L, Shi Y, Luo A. Transcriptomic analysis reveals ozone treatment delays kiwifruit postharvest softening by modulating cell wall metabolism. J Food Sci 2024; 89:2001-2016. [PMID: 38369949 DOI: 10.1111/1750-3841.16979] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/25/2023] [Revised: 01/17/2024] [Accepted: 01/27/2024] [Indexed: 02/20/2024]
Abstract
Kiwifruit ripening and senescence after harvesting are closely related to its economic value. Transcriptome analysis and biochemical parameters were used to investigate the differences in gene expression levels and the potential regulation of cell wall metabolism in kiwifruit treated with ozone, thereby regulating fruit softening and prolonging postharvest life. Compared to the control group, the activities of the cell wall modification enzyme were lower under ozone treatment, the content of polysaccharide in the cell wall of primary pectin and cellulose was higher, and the content of soluble pectin was lower. Meanwhile, ozone treatment delayed the degradation of the cell wall mesosphere during storage. A total of 20 pectinesterase (PE)-related genes were identified by sequencing analysis. The data analysis and quantitative polymerase chain reaction results confirmed that cell wall modifying enzyme genes played an important role in softening and senescence after harvesting, which may reduce or induce the expression of certain genes affecting cell wall metabolism. Ozone treatment not only regulates active genes such as xyloglucan endo glycosyltransferase/hydrolase, cellulose synthase, polygalacturonase, and PE to maintain the quality of fruit after harvest but also acts synergically with cell wall modifying enzymes to inhibit the degradation of cell wall, resulting in changes in the ultrastructure of cell wall, thereby reducing the hardness of kiwifruit. In addition, according to the results of cis-acting elements, cell wall degradation is also related to downstream hormone signaling, especially PE-related genes. These results provide a theoretical basis for studying the mechanism of firmness and cell wall metabolism difference of kiwifruit and also lay a good foundation for further research.
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Affiliation(s)
- Yan Wang
- College of Food Science and Engineering, Northwest A&F University, Xianyang, Shaanxi, China
| | - Yaoxing Niu
- College of Food Science and Engineering, Northwest A&F University, Xianyang, Shaanxi, China
| | - Lixia Ye
- College of Food Science and Engineering, Northwest A&F University, Xianyang, Shaanxi, China
| | - Yubing Shi
- College of Food Science and Engineering, Northwest A&F University, Xianyang, Shaanxi, China
| | - Anwei Luo
- College of Food Science and Engineering, Northwest A&F University, Xianyang, Shaanxi, China
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2
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Zhang M, Yang X, Yin C, Lin X, Liu K, Zhang K, Su Y, Zou X, Liao L, Wang X, He S, He R, Sun G, He J, Xiong B, Wang Z. Effect of exogenous melatonin on antioxidant properties and fruit softening of 'Fengtang' plum fruit ( Prunus salicina Lindl.) during storage at room temperature. FRONTIERS IN PLANT SCIENCE 2024; 15:1348744. [PMID: 38510435 PMCID: PMC10950901 DOI: 10.3389/fpls.2024.1348744] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/03/2023] [Accepted: 02/26/2024] [Indexed: 03/22/2024]
Abstract
'Fengtang' plums soften quickly and lose flavor after harvest. This study comprehensively evaluated the effect of exogenous melatonin on the fruit quality of 'Fengtang' plums. According to our findings, exogenous melatonin prevented plum fruit from losing water, delayed the decline in firmness, and preserved a high TSS/TA level. Additionally, exogenous melatonin also enhanced the activity of antioxidant enzymes and increased the non-enzymatic antioxidants, thereby further increasing the antioxidant capacity of plum fruit. Notably, exogenous melatonin delayed the degradation of covalent soluble pectin (CSP), cellulose, and hemicellulose, as well as the rise in water-soluble pectin (WSP) concentration and the activity of cell wall degrading enzymes. Further investigation using atomic force microscopy (AFM) revealed that the chain-like structure of ionic-soluble pectin (ISP) and the self-assembly network structures of CSP were depolymerized, and melatonin treatment retarded the depolymerization of pectin structures. Our results showed that exogenous melatonin preserved the postharvest quality of plum fruits by controlling fruit softness and antioxidant capacity during storage.
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Affiliation(s)
| | | | | | | | | | | | | | | | | | | | | | | | | | | | - Bo Xiong
- College of Horticulture, Sichuan Agricultural University, Chengdu, China
| | - Zhihui Wang
- College of Horticulture, Sichuan Agricultural University, Chengdu, China
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3
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Zhao Y, Bi J, Zhao X, Engelsen SB, Wu X, Ma Y, Guo Y, Du Q, Yi J. New insight into pectic fractions of cell wall: Impact of extraction on pectin structure and in vitro gut fermentation. Int J Biol Macromol 2023; 253:127515. [PMID: 37865353 DOI: 10.1016/j.ijbiomac.2023.127515] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/14/2022] [Revised: 09/16/2023] [Accepted: 10/08/2023] [Indexed: 10/23/2023]
Abstract
Pectic polysaccharides modulate gut fermentation ability, which is determined by structural characteristics. In this work, apple pectins were extracted by HCl (HAEP), NaOH (AEP), cellulase (EAEP), and in parallel cell wall pectic fractions were sequentially extracted by water (WEP), chelator (CEP) and NaOH (NEP). The aim is to comprehensively compare the impact of extraction on pectin structure and gut fermentation behavior. Results showed that high content of galacturonic acid (90.65 mol%) and large molecular weight (675 kg/mol) were detected in the HAEP. Molecular morphology of the HAEP presented high linearity, while AEP, EAEP and WEP exhibited compact filamentous structures with highly branched patterns. The AEP was characterized by high yield (33.1 g/100 g d.b.), moderate molecular weight (304 kg/mol) and large extent of rhamnogalacturonan-I region (24.88 %) with low degree of branching (1.77). After in vitro simulated gut fermentation for 24 h, total content of short-chain fatty acid (SCFA) generated with the AEP supplement increased to 36.8 mmol/L, followed by EAEP, HAEP and WEP (25.2, 24.2 and 20.3 mmol/L, respectively). Meanwhile, WEP simultaneously produced the highest ammonia content (22.4 mmol/L). This investigation suggests that the fermentation of AEP produces more beneficial SCFA and less ammonia, thus indicating a better gut fermentation property.
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Affiliation(s)
- Yuanyuan Zhao
- Institute of Food Science and Technology, Chinese Academy of Agricultural Sciences (CAAS)/Key Laboratory of Agro-Products Processing, Ministry of Agriculture and Rural Affairs, Beijing 100193, China; Institute of Agri-Food Processing and Nutrition, Beijing Academy of Agriculture and Forestry Sciences, Beijing 100097, China; Department of Food Science, Faculty of Science, University of Copenhagen, Frederiksberg 1958, Denmark
| | - Jinfeng Bi
- Institute of Food Science and Technology, Chinese Academy of Agricultural Sciences (CAAS)/Key Laboratory of Agro-Products Processing, Ministry of Agriculture and Rural Affairs, Beijing 100193, China.
| | - Xiaoyan Zhao
- Institute of Agri-Food Processing and Nutrition, Beijing Academy of Agriculture and Forestry Sciences, Beijing 100097, China
| | - Søren Balling Engelsen
- Department of Food Science, Faculty of Science, University of Copenhagen, Frederiksberg 1958, Denmark
| | - Xinye Wu
- Institute of Food Science and Technology, Chinese Academy of Agricultural Sciences (CAAS)/Key Laboratory of Agro-Products Processing, Ministry of Agriculture and Rural Affairs, Beijing 100193, China
| | - Youchuan Ma
- Institute of Food Science and Technology, Chinese Academy of Agricultural Sciences (CAAS)/Key Laboratory of Agro-Products Processing, Ministry of Agriculture and Rural Affairs, Beijing 100193, China
| | - Yuxia Guo
- Institute of Food Science and Technology, Chinese Academy of Agricultural Sciences (CAAS)/Key Laboratory of Agro-Products Processing, Ministry of Agriculture and Rural Affairs, Beijing 100193, China
| | - Qianqian Du
- Institute of Food Science and Technology, Chinese Academy of Agricultural Sciences (CAAS)/Key Laboratory of Agro-Products Processing, Ministry of Agriculture and Rural Affairs, Beijing 100193, China; School of Food Science and Technology, Dalian Polytechnic University, Dalian 116034, China
| | - Jianyong Yi
- Institute of Food Science and Technology, Chinese Academy of Agricultural Sciences (CAAS)/Key Laboratory of Agro-Products Processing, Ministry of Agriculture and Rural Affairs, Beijing 100193, China.
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Li G, Song C, Manzoor MA, Li D, Cao Y, Cai Y. Functional and kinetics of two efficient phenylalanine ammonia lyase from Pyrus bretschneideri. BMC PLANT BIOLOGY 2023; 23:612. [PMID: 38041062 PMCID: PMC10693048 DOI: 10.1186/s12870-023-04586-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/21/2023] [Accepted: 11/06/2023] [Indexed: 12/03/2023]
Abstract
BACKGROUND The enzyme phenylalanine ammonia lyase (PAL) controls the transition from primary to secondary metabolism by converting L-phenylalanine (L-Phe) to cinnamic acid. However, the function of PAL in pear plants (Pyrus bretschneideri) has not yet been fully elucidated. RESULTS We identified three PAL genes (PbPAL1, PbPAL2 and PbPAL3) from the pear genome by exploring pear genome databases. The evolutionary tree revealed that three PbPALs were classified into one group. We expressed PbPAL1 and PbPAL2 recombinant proteins, and the purified PbPAL1 and PbPAL2 proteins showed strict substrate specificity for L-Phe, no activity toward L-Tyr in vitro, and modest changes in kinetics and enzyme characteristics. Furthermore, overexpression of PbAL1 and PbPAL1-RNAi, respectively, and resulted in significant changes in stone cell and lignin contents in pear fruits. The results of yeast one-hybrid (Y1H) assays that PbWLIM1 could bind to the conserved PAL box in the PbPAL promoter and regulate the transcription level of PbPAL2. CONCLUSIONS Our findings not only showed PbPAL's potential role in lignin biosynthesis but also laid the foundation for future studies on the regulation of lignin synthesis and stone cell development in pear fruit utilizing molecular biology approaches.
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Affiliation(s)
- Guohui Li
- Anhui Engineering Research Center for Eco-Agriculture of Traditional Chinese Medicine, Anhui Provincial Key Laboratory for Quality Evaluation and Improvement of Traditional Chinese Medicine, College of Biological and Pharmaceutical Engineering, West Anhui University, Lu'an, 237012, China
| | - Cheng Song
- Anhui Engineering Research Center for Eco-Agriculture of Traditional Chinese Medicine, Anhui Provincial Key Laboratory for Quality Evaluation and Improvement of Traditional Chinese Medicine, College of Biological and Pharmaceutical Engineering, West Anhui University, Lu'an, 237012, China
| | - Muhammad Aamir Manzoor
- Department of Plant Science, School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai, China
| | - Daoyuan Li
- Anhui Engineering Research Center for Eco-Agriculture of Traditional Chinese Medicine, Anhui Provincial Key Laboratory for Quality Evaluation and Improvement of Traditional Chinese Medicine, College of Biological and Pharmaceutical Engineering, West Anhui University, Lu'an, 237012, China
| | - Yunpeng Cao
- CAS Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan, 430074, China.
| | - Yongping Cai
- Anhui Agricultural University, Hefei, 230036, China.
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Quintero Pimiento CR, Fernández PV, Ciancia M, López-Córdoba A, Goyanes S, Bertuzzi MA, Foresti ML. Antioxidant Edible Films Based on Pear Juice and Pregelatinized Cassava Starch: Effect of the Carbohydrate Profile at Different Degrees of Pear Ripeness. Polymers (Basel) 2023; 15:4263. [PMID: 37959942 PMCID: PMC10649233 DOI: 10.3390/polym15214263] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/22/2023] [Revised: 10/18/2023] [Accepted: 10/19/2023] [Indexed: 11/15/2023] Open
Abstract
Edible films based on fruit and vegetable purees combined with different food-grade biopolymeric binding agents (e.g., pectin, gelatin, starch, sodium alginate) are recognized as interesting packaging materials that benefit from the physical, mechanical, and barrier properties of biopolymers as well as the sensory and nutritional properties of purees. In the current contribution, edible antioxidant films based on pear juice and pregelatinized cassava starch were developed. In particular, the suitability of using pregelatinized cassava starch for the non-thermal production of these novel edible films was evaluated. In addition, the effects on the films' properties derived from the use of pear juice instead of the complete puree, from the content of juice used, and from the carbohydrate composition associated with the ripening of pears were all studied. The produced films were characterized in terms of their total polyphenol content, water sensitivity, and water barrier, optical, mechanical and antioxidant properties. Results showed that the use of pear juice leads to films with enhanced transparency compared with puree-based films, and that juice concentration and carbohydrate composition associated with the degree of fruit ripeness strongly govern the films' properties. Furthermore, the addition of pregelatinized cassava starch at room temperature discloses a significant and favorable impact on the cohesiveness, lightness, water resistance, and adhesiveness of the pear-juice-based films, which is mainly attributed to the effective interactions established between the starch macromolecules and the juice components.
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Affiliation(s)
- Carmen Rosa Quintero Pimiento
- Universidad de Buenos Aires, Facultad de Ingeniería, Buenos Aires 1127, Argentina;
- CONICET–Universidad de Buenos Aires, Instituto de Tecnología en Polímeros y Nanotecnología (ITPN), Buenos Aires 1127, Argentina
| | - Paula Virginia Fernández
- Universidad de Buenos Aires, Facultad de Agronomía, Departamento de Biología Aplicada y Alimentos, Cátedra de Química de Biomoléculas, Buenos Aires 1127, Argentina; (P.V.F.); (M.C.)
- CONICET, Centro de Investigación de Hidrato de Carbono (CIHIDECAR)-CONICET, UBA, Buenos Aires 1428, Argentina
| | - Marina Ciancia
- Universidad de Buenos Aires, Facultad de Agronomía, Departamento de Biología Aplicada y Alimentos, Cátedra de Química de Biomoléculas, Buenos Aires 1127, Argentina; (P.V.F.); (M.C.)
- CONICET, Centro de Investigación de Hidrato de Carbono (CIHIDECAR)-CONICET, UBA, Buenos Aires 1428, Argentina
| | - Alex López-Córdoba
- Grupo de Investigación en Bioeconomía y Sostenibilidad Agroalimentaria, Escuela de Administración de Empresas Agropecuarias, Facultad Seccional Duitama, Universidad Pedagógica y Tecnológica de Colombia, Duitama 150461, Colombia;
| | - Silvia Goyanes
- Universidad de Buenos Aires, Facultad de Ciencias Exactas y Naturales, Departamento de Física, Buenos Aires 1127, Argentina;
- CONICET–Universidad de Buenos Aires, Instituto de Física de Buenos Aires (IFIBA), Buenos Aires 1127, Argentina
| | - María Alejandra Bertuzzi
- Universidad Nacional de Salta, Facultad de Ingeniería, Instituto de Investigaciones para la Industria Química (INIQUI) CONICET, Salta 4400, Argentina;
| | - María Laura Foresti
- Universidad de Buenos Aires, Facultad de Ingeniería, Buenos Aires 1127, Argentina;
- CONICET–Universidad de Buenos Aires, Instituto de Tecnología en Polímeros y Nanotecnología (ITPN), Buenos Aires 1127, Argentina
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6
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Wang Y, Xu Y, Liao F, Li T, Li X, Wu B, Hong SB, Xu K, Zang Y, Zheng W. Genome-wide identification of GH9 gene family and the assessment of its role during fruit abscission zone formation in Vaccinium ashei. PLANT CELL REPORTS 2023; 42:1589-1609. [PMID: 37474780 DOI: 10.1007/s00299-023-03049-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/06/2023] [Accepted: 07/07/2023] [Indexed: 07/22/2023]
Abstract
KEY MESSAGE The genomic location and stage-specific expression pattern of GH9 genes reveal their critical roles during fruit abscission zone formation in Vaccinium ashei. Glycosyl hydrolase family 9 (GH9) cellulases play a crucial role in both cellulose synthesis and hydrolysis during plant growth and development. Despite this importance, there is currently no study on the involvement of GH9-encoding genes, specifically VaGH9s, in abscission zone formation of rabbiteye blueberries (Vaccinium ashei). In this study, we identified a total of 61 VaGH9s in the genome, which can be classified into 3 subclasses based on conserved motifs and domains, gene structures, and phylogenetic analyses. Our synteny analysis revealed that VaGH9s are more closely related to the GH9s of Populus L. than to those of Arabidopsis, Vitis vinifera, and Citrus sinensis. In silico structural analysis predicted that most of VaGH9s are hydrophilic, and localized in cell membrane and/or cell wall, and the variable sets of cis-acting regulatory elements and functional diversity with four categories of stress response, hormone regulation, growth and development, and transcription factor-related elements are present in the promoter sequence of VaGH9s genes. Transcriptomic analysis showed that there were 22 differentially expressed VaGH9s in fruit abscission zone tissue at the veraison stage, and the expression of VaGH9B2 and VaGH9C10 was continuously increased during fruit maturation, which were in parallel with the increasing levels of cellulase activity and oxidative stress indicators, suggesting that they are involved in the separation stage of fruit abscission in Vaccinium ashei. Our work identified 22 VaGH9s potentially involved in different stages of fruit abscission and would aid further investigation into the molecular regulation of abscission in rabbiteye blueberries fruit.
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Affiliation(s)
- Yingying Wang
- Key Laboratory of Quality and Safety Control for Subtropical Fruit and Vegetable, Ministry of Agriculture and Rural Affairs, Collaborative Innovation Center for Efficient and Green Production of Agriculture in Mountainous Areas of Zhejiang Province, College of Horticulture Science, Zhejiang A&F University, Wusu Road 666, Hangzhou, 311300, Zhejiang, China
| | - Yue Xu
- Key Laboratory of Quality and Safety Control for Subtropical Fruit and Vegetable, Ministry of Agriculture and Rural Affairs, Collaborative Innovation Center for Efficient and Green Production of Agriculture in Mountainous Areas of Zhejiang Province, College of Horticulture Science, Zhejiang A&F University, Wusu Road 666, Hangzhou, 311300, Zhejiang, China
| | - Fangfang Liao
- Key Laboratory of Quality and Safety Control for Subtropical Fruit and Vegetable, Ministry of Agriculture and Rural Affairs, Collaborative Innovation Center for Efficient and Green Production of Agriculture in Mountainous Areas of Zhejiang Province, College of Horticulture Science, Zhejiang A&F University, Wusu Road 666, Hangzhou, 311300, Zhejiang, China
| | - Ting Li
- Key Laboratory of Quality and Safety Control for Subtropical Fruit and Vegetable, Ministry of Agriculture and Rural Affairs, Collaborative Innovation Center for Efficient and Green Production of Agriculture in Mountainous Areas of Zhejiang Province, College of Horticulture Science, Zhejiang A&F University, Wusu Road 666, Hangzhou, 311300, Zhejiang, China
| | - Xiaolong Li
- Key Laboratory of Quality and Safety Control for Subtropical Fruit and Vegetable, Ministry of Agriculture and Rural Affairs, Collaborative Innovation Center for Efficient and Green Production of Agriculture in Mountainous Areas of Zhejiang Province, College of Horticulture Science, Zhejiang A&F University, Wusu Road 666, Hangzhou, 311300, Zhejiang, China
| | - Boping Wu
- Key Laboratory of Quality and Safety Control for Subtropical Fruit and Vegetable, Ministry of Agriculture and Rural Affairs, Collaborative Innovation Center for Efficient and Green Production of Agriculture in Mountainous Areas of Zhejiang Province, College of Horticulture Science, Zhejiang A&F University, Wusu Road 666, Hangzhou, 311300, Zhejiang, China
| | - Seung-Beom Hong
- Department of Biotechnology, University of Houston Clear Lake, Houston, TX, 77058-1098, USA
| | - Kai Xu
- Key Laboratory of Quality and Safety Control for Subtropical Fruit and Vegetable, Ministry of Agriculture and Rural Affairs, Collaborative Innovation Center for Efficient and Green Production of Agriculture in Mountainous Areas of Zhejiang Province, College of Horticulture Science, Zhejiang A&F University, Wusu Road 666, Hangzhou, 311300, Zhejiang, China
| | - Yunxiang Zang
- Key Laboratory of Quality and Safety Control for Subtropical Fruit and Vegetable, Ministry of Agriculture and Rural Affairs, Collaborative Innovation Center for Efficient and Green Production of Agriculture in Mountainous Areas of Zhejiang Province, College of Horticulture Science, Zhejiang A&F University, Wusu Road 666, Hangzhou, 311300, Zhejiang, China
| | - Weiwei Zheng
- Key Laboratory of Quality and Safety Control for Subtropical Fruit and Vegetable, Ministry of Agriculture and Rural Affairs, Collaborative Innovation Center for Efficient and Green Production of Agriculture in Mountainous Areas of Zhejiang Province, College of Horticulture Science, Zhejiang A&F University, Wusu Road 666, Hangzhou, 311300, Zhejiang, China.
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7
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Whitehill JGA, Yuen MMS, Chiang A, Ritland CE, Bohlmann J. Transcriptome features of stone cell development in weevil-resistant and susceptible Sitka spruce. THE NEW PHYTOLOGIST 2023; 239:2138-2152. [PMID: 37403300 DOI: 10.1111/nph.19103] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/25/2023] [Accepted: 06/02/2023] [Indexed: 07/06/2023]
Abstract
Stone cells are a specialized, highly lignified cell type found in both angiosperms and gymnosperms. In conifers, abundance of stone cells in the cortex provides a robust constitutive physical defense against stem feeding insects. Stone cells are a major insect-resistance trait in Sitka spruce (Picea sitchensis), occurring in dense clusters in apical shoots of trees resistant (R) to spruce weevil (Pissodes strobi) but being rare in susceptible (S) trees. To learn more about molecular mechanisms of stone cell formation in conifers, we used laser microdissection and RNA sequencing to develop cell-type-specific transcriptomes of developing stone cells from R and S trees. Using light, immunohistochemical, and fluorescence microscopy, we also visualized the deposition of cellulose, xylan, and lignin associated with stone cell development. A total of 1293 genes were differentially expressed at higher levels in developing stone cells relative to cortical parenchyma. Genes with potential roles in stone cell secondary cell wall formation (SCW) were identified and their expression evaluated over a time course of stone cell formation in R and S trees. The expression of several transcriptional regulators was associated with stone cell formation, including a NAC family transcription factor and several genes annotated as MYB transcription factors with known roles in SCW formation.
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Affiliation(s)
- Justin G A Whitehill
- Michael Smith Laboratories, University of British Columbia, 301-2185 East Mall, Vancouver, BC, V6T 1Z4, Canada
- Forest Improvement and Research Management Branch, British Columbia Ministry of Forests, Lands, and Natural Resource Operations and Rural Development, 7380 Puckle Road, Saanichton, BC, V8M 1W4, Canada
- Department of Forestry and Environmental Resources, North Carolina State University, Raleigh, NC, 27695, USA
| | - Macaire M S Yuen
- Michael Smith Laboratories, University of British Columbia, 301-2185 East Mall, Vancouver, BC, V6T 1Z4, Canada
| | - Angela Chiang
- Michael Smith Laboratories, University of British Columbia, 301-2185 East Mall, Vancouver, BC, V6T 1Z4, Canada
- Department of Forestry and Environmental Resources, North Carolina State University, Raleigh, NC, 27695, USA
| | - Carol E Ritland
- Michael Smith Laboratories, University of British Columbia, 301-2185 East Mall, Vancouver, BC, V6T 1Z4, Canada
- Department of Forest and Conservation Sciences, University of British Columbia, 2424 Main Mall, Vancouver, BC, V6T 1Z4, Canada
| | - Jörg Bohlmann
- Michael Smith Laboratories, University of British Columbia, 301-2185 East Mall, Vancouver, BC, V6T 1Z4, Canada
- Department of Forest and Conservation Sciences, University of British Columbia, 2424 Main Mall, Vancouver, BC, V6T 1Z4, Canada
- Department of Botany, University of British Columbia, 6270 University Boulevard, Vancouver, BC, V6T 1Z4, Canada
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8
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Alkan ON, Önder D, Önder S, Karakurt Y. Cell wall composition and enzyme-related activities in eggplant as affected by hot water, 1-MCP and calcium chloride treatments. FOOD SCI TECHNOL INT 2023; 29:665-679. [PMID: 36300519 DOI: 10.1177/10820132221132914] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/08/2023]
Abstract
The effects of postharvest applications of hot water (HWT) (45, 50, and 55 °C), 1-MCP (1, 5, and 10 μL/L), and CaCl2 (1, 2, and 3%) on polygalacturonase (PG), pectin methylesterase (PME), α-galactosidase (α-Gal), β-galactosidase (β-Gal) and β-1,4-glucanase (β-1,4-Glu) activities, and the fruit firmness and cell wall composition of eggplant fruit were investigated. The results showed that the decrease in the eggplants firmness was delayed by HWT, 1-MCP, and CaCl2 treatments during storage compared with the control. However, HWTs were less effective than the 1-MCP and CaCl2 treatments. The results show that 1-MCP and CaCl2 treatments inhibited the depolymerization of water (WSP), CDTA (CSP), and sodium carbonate (SSP) soluble polyuronides. The results suggest that 1-MCP (5 and 10 μL/L) and CaCl2 (1, 2, and 3%) could prevent eggplant softening by inhibiting hydrolase enzymes and reducing the disintegration of the polysaccharides. In addition, 1-MCP and CaCl2 were more effective than hot water treatment in extending postharvest storage life. There is a significantly high correlation between firmness, polyuronide content and cell wall enzyme activity.
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Affiliation(s)
- Oktay Nazmi Alkan
- Department of Agricultural Biotechnology, Faculty of Agriculture, Isparta University of Applied Sciences, Isparta, Türkiye
| | - Damla Önder
- Department of Biology, Faculty of Arts and Sciences, Suleyman Demirel University, Isparta, Türkiye
| | - Sercan Önder
- Department of Agricultural Biotechnology, Faculty of Agriculture, Isparta University of Applied Sciences, Isparta, Türkiye
| | - Yaşar Karakurt
- Department of Agricultural Biotechnology, Faculty of Agriculture, Isparta University of Applied Sciences, Isparta, Türkiye
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9
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Degradation of water-soluble polysaccharides in pulp of litchi during storage. Food Chem 2023; 402:134289. [DOI: 10.1016/j.foodchem.2022.134289] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/31/2021] [Revised: 08/14/2022] [Accepted: 09/13/2022] [Indexed: 11/23/2022]
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10
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Jin X, Cheng C, Qi Q, Zhou S, Wang C, Zhang Y, Sun C, Wang Y, Dang R, Yang S. PpERF1b-like enhances lignin synthesis in pear ( Pyrus pyrifolia) 'hard-end' fruit. FRONTIERS IN PLANT SCIENCE 2022; 13:1087388. [PMID: 36589086 PMCID: PMC9797680 DOI: 10.3389/fpls.2022.1087388] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/02/2022] [Accepted: 11/28/2022] [Indexed: 06/17/2023]
Abstract
The hard-end is a disorder of pear fruit, however, the mechanisms underlying its development remain unknown. In this study, we found that the hard-end fruit contained a higher transcript abundance level of ethylene-response factor 1b-like (PpERF1b-like) and released more ethylene compared to normal pear. In the ethephon treated normal fruit, flesh tissues accumulated more lignin together with elevated expression of PpERF1b-like. Overexpressing PpERF1b-like transiently in fruit and stably in callus increased lignin accumulation and the expression of lignin biosynthesis genes; the opposite results were observed in fruit showing repressed expression of PpERF1b-like. These results confirmed the role of PpERF1b-like in promoting hard-end formation through promoting lignin synthesis. This study provided valuable information for further clarifying the regulation of hard-end formation in pear.
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Affiliation(s)
- Xiaoshan Jin
- College of Horticulture, Qingdao Agricultural University, Qingdao, Shandong, China
| | - Chenxia Cheng
- College of Horticulture, Qingdao Agricultural University, Qingdao, Shandong, China
| | - Qi Qi
- College of Horticulture, Qingdao Agricultural University, Qingdao, Shandong, China
| | - Suping Zhou
- Department of Agricultural and Environmental Sciences, College of Agriculture, Tennessee State University, Nashville, TN, United States
| | - Caihong Wang
- College of Horticulture, Qingdao Agricultural University, Qingdao, Shandong, China
| | - Yong Zhang
- College of Horticulture, Qingdao Agricultural University, Qingdao, Shandong, China
| | - Chao Sun
- College of Horticulture, Qingdao Agricultural University, Qingdao, Shandong, China
| | - Yuling Wang
- College of Horticulture, Qingdao Agricultural University, Qingdao, Shandong, China
| | - Ruihong Dang
- Bioengineering College, Aks Vocational and Technical College, Wensu County, Aks, Xinjiang, China
| | - Shaolan Yang
- College of Horticulture, Qingdao Agricultural University, Qingdao, Shandong, China
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11
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Kurzyna-Szklarek M, Cybulska J, Zdunek A. Analysis of the chemical composition of natural carbohydrates - An overview of methods. Food Chem 2022; 394:133466. [PMID: 35716502 DOI: 10.1016/j.foodchem.2022.133466] [Citation(s) in RCA: 10] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/23/2022] [Revised: 05/13/2022] [Accepted: 06/09/2022] [Indexed: 11/19/2022]
Abstract
Natural carbohydrates are gaining importance over a wide spectrum of human activity due to their versatile functionalities. The properties of carbohydrates are currently used in many branches of industry and new possibilities of their utilization, like in medicine or materials science, are demonstrated systematically. The attractive properties of carbohydrates result from their chemical structure and ability to form macromolecules and derivatives. Each application of carbohydrate requires a knowledge of their chemical composition, which due to the number and differentiation of monosaccharides and their spatial forms is often challenging. This review presents an overview on sample preparation and the methods used for the determination of the fine chemical structure of natural carbohydrates. Most popular and reliable colorimetric, chromatographic and spectroscopic methods are presented with an emphasis on their pros and cons.
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Affiliation(s)
| | - Justyna Cybulska
- Institute of Agrophysics, Polish Academy of Sciences, Doświadczalna 4, 20-290 Lublin, Poland.
| | - Artur Zdunek
- Institute of Agrophysics, Polish Academy of Sciences, Doświadczalna 4, 20-290 Lublin, Poland
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12
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Cao X, Bai G, Zheng J, Zhu D, Li J. Effects of freeze-thaw cycles on the texture of Nanguo pear. J Texture Stud 2022; 53:662-671. [PMID: 35661160 DOI: 10.1111/jtxs.12701] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/29/2022] [Revised: 05/15/2022] [Accepted: 05/27/2022] [Indexed: 11/30/2022]
Abstract
Freezing is a way to preserve the quality of fruit for a long time. Nanguo pear stored at low temperature is prone to browning and lignification. In this study, freeze-thaw cycles were used to simulate the temperature fluctuation in the process, storage and transportation. The texture properties were taken as the research focus to analyze the lignification phenomenon of Nanguo pear under freeze-thaw cycles. The results showed that freeze-thaw treatment significantly reduced the firmness and propectin content of Nanguo pear, increased the content of stone cells in the fruit, but also destroyed the size of stone cells in the fruit. However, with the increase of freezing-thawing cycles, the content of lignin, stone cell content and PAL activity increased significantly, while the content of chlorogenic acid increased first and then decreased. These results are helpful to further understand the correlation between texture change with fruit firmness and formation mechanism of stone cells during freeze-thaw cycles of Nanguo pear. This article is protected by copyright. All rights reserved.
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Affiliation(s)
- Xuehui Cao
- College of Food Science and Technology, Bohai University, Jinzhou, Liaoning, China
| | - Ge Bai
- College of Food Science and Technology, Bohai University, Jinzhou, Liaoning, China
| | - Jianrong Zheng
- College of Food Science and Technology, Bohai University, Jinzhou, Liaoning, China
| | - Danshi Zhu
- College of Food Science and Technology, Bohai University, Jinzhou, Liaoning, China
| | - Jianrong Li
- College of Food Science and Technology, Bohai University, Jinzhou, Liaoning, China
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13
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Chen C, Cai N, Wan C, Huang Q, Chen J. Cell wall modification and lignin biosynthesis involved in disease resistance against Diaporthe citri in harvested pummelo fruit elicited by carvacrol. JOURNAL OF THE SCIENCE OF FOOD AND AGRICULTURE 2022; 102:3140-3149. [PMID: 34791654 DOI: 10.1002/jsfa.11657] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/22/2021] [Revised: 09/30/2021] [Accepted: 11/17/2021] [Indexed: 02/05/2023]
Abstract
BACKGROUND Phomopsis stem-end rot caused by Diaporthe citri, causes significant commercial postharvest losses of pummelo fruit during storage. Carvacrol (CVR) is a known generally recognized as safe and has the ability to prolong the preservation of harvested fruits. In the present study, the inhibitory effects of CVR treatment at the appropriate concentration on Phomopsis stem-end rot development of harvested pummelo fruit inoculated with D. citri were evaluated by the amounts of cell wall components, the activities and gene expressions of related enzymes involved in cell wall modification and lignin biosynthesis. RESULTS Results indicated that CVR completely inhibited D. citri growth in vitro at 200 mg L-1 and significantly controlled Phomopsis stem-end rot development in harvested pummelo. The CVR treatment delayed peel softening and browning, and retarded electrolyte leakage, superoxide radical (O2 •- ) production, and malondialdehyde content. The CVR-treated fruit maintained higher amounts of cell wall material, protopectin, hemicelluloses, and cellulose, but exhibited lower water-soluble pectin amount. Moreover, in D. citri-inoculated fruit, CVR treatment suppressed the activities and gene expressions of cell wall disassembling-enzymes, including pectin methylesterase, polygalacturonase, cellulase, and β-galactosidase, while the development of cell wall degradation was reduced. Meanwhile, the CVR treatment enhanced the lignin biosynthesis by increasing the activities and up-regulating the gene expressions of phenylalanine ammonialyase, cinnamic alcohol dehydrogenase, and peroxidase accompanied with elevated level of lignin in pummelo fruit. CONCLUSION The disease resistance to D. citri in pummelo fruit elicited by CVR treatment is related to delaying cell wall degradation and enhancing lignin biosynthesis. © 2021 Society of Chemical Industry.
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Affiliation(s)
- Chuying Chen
- Provincial Key Laboratory for Preservation Technology and Non-Destructive Testing of Postharvest Fruits & Vegetables in Jiangxi, College of Agronomy, Jiangxi Agricultural University, Nanchang, Jiangxi Province, 330045, P. R. China
| | - Nan Cai
- Provincial Key Laboratory for Preservation Technology and Non-Destructive Testing of Postharvest Fruits & Vegetables in Jiangxi, College of Agronomy, Jiangxi Agricultural University, Nanchang, Jiangxi Province, 330045, P. R. China
| | - Chunpeng Wan
- Provincial Key Laboratory for Preservation Technology and Non-Destructive Testing of Postharvest Fruits & Vegetables in Jiangxi, College of Agronomy, Jiangxi Agricultural University, Nanchang, Jiangxi Province, 330045, P. R. China
| | - Qiang Huang
- Provincial Key Laboratory for Preservation Technology and Non-Destructive Testing of Postharvest Fruits & Vegetables in Jiangxi, College of Agronomy, Jiangxi Agricultural University, Nanchang, Jiangxi Province, 330045, P. R. China
| | - Jinyin Chen
- Provincial Key Laboratory for Preservation Technology and Non-Destructive Testing of Postharvest Fruits & Vegetables in Jiangxi, College of Agronomy, Jiangxi Agricultural University, Nanchang, Jiangxi Province, 330045, P. R. China
- College of Materials and Chemical Engineering, Pingxiang University, Pingxiang, Jiangxi Province, 337055, P. R. China
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14
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Qin Z, Pan J, Li J, Sun J, Khoo HE, Dong X. Effects of 1‐methylcyclopropene and abscisic acid treatments on texture properties and microstructures of postharvest tangerine (
Citrus reticulata
cv. Orah). J FOOD PROCESS PRES 2022. [DOI: 10.1111/jfpp.16633] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/01/2022]
Affiliation(s)
- Ziyi Qin
- Guangxi Key Laboratory of Electrochemical and Magneto‐chemical Functional Materials, College of Chemistry and Bioengineering Guilin University of Technology Guilin China
| | - Jiali Pan
- Guangxi Key Laboratory of Electrochemical and Magneto‐chemical Functional Materials, College of Chemistry and Bioengineering Guilin University of Technology Guilin China
| | - Jing Li
- Guangxi Key Laboratory of Electrochemical and Magneto‐chemical Functional Materials, College of Chemistry and Bioengineering Guilin University of Technology Guilin China
- South Asia Branch of National Engineering Center of Dairy for Maternal and Child Health Guilin University of Technology Guilin China
| | - Jian Sun
- Agro‐food Science and Technology Research Institute Guangxi Academy of Agricultural Sciences Nanning China
- Guangxi Key Laboratory of Fruits and Vegetables Storage‐processing Technology Nanning China
| | - Hock Eng Khoo
- Guangxi Key Laboratory of Electrochemical and Magneto‐chemical Functional Materials, College of Chemistry and Bioengineering Guilin University of Technology Guilin China
- South Asia Branch of National Engineering Center of Dairy for Maternal and Child Health Guilin University of Technology Guilin China
| | - Xinhong Dong
- Guangxi Key Laboratory of Electrochemical and Magneto‐chemical Functional Materials, College of Chemistry and Bioengineering Guilin University of Technology Guilin China
- South Asia Branch of National Engineering Center of Dairy for Maternal and Child Health Guilin University of Technology Guilin China
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15
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Lin S, Lin D, Wu B, Ma S, Sun S, Zhang T, Zhang W, Bai Y, Wang Q, Wu J. Morphological and Developmental Features of Stone Cells in Eriobotrya Fruits. FRONTIERS IN PLANT SCIENCE 2022; 13:823993. [PMID: 35154231 PMCID: PMC8828544 DOI: 10.3389/fpls.2022.823993] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/28/2021] [Accepted: 01/06/2022] [Indexed: 06/14/2023]
Abstract
Some members of the Rosaceae family, particularly pear, contain stone cells in their fruits. Although stone cells in pear fruits are well studied, relatively little attention has been given to loquat stone cells. Only a few reports have suggested a relationship between stone cell traits and storage and transport tolerance of loquat fruits. Previously, we generated the variety JT8 from the interspecific hybrid of the loquat cultivar Jiefangzhong (JFZ; Eriobotrya japonica Lindl. cv. Jiefangzhong, female parent) and wild Taiwanese loquat (TL; E. deflexa Nakai, male parent). The JT8 fruits had a granular feel, similar to that of pear fruits, due to the presence of stone cells. In this study, the shape, size, development, and distribution dynamics of stone cells of Eriobotrya plants were thoroughly investigated. The results showed that loquat stone cells are brachysclereids and often contain typical branching pits. Loquat stone cells were distributed as both single stone cells and in stone cell clusters (SCCs), and the density of the stone cells near the core was higher than that near the peel. Stone cell density first increased and then decreased during fruit development. These traits noted in Eriobotrya were very similar to those observed in pear, indicating a close relationship between loquat and pear. Moreover, the contents, density dynamics, and aggregation traits of stone cells of the interspecific hybrid JT8 were derived from the male parent (TL). Transgressive segregation was likely exhibited in the content of stone cells and the size of the SCCs. More specifically, the content of stone cells reached 1.61% (w/w). In extreme cases, SCCs of JT8 exceeded 1,000 μm in length and 500 μm in width. This demonstrated that stone cell traits could be transmitted from parent to progeny through interspecific hybridization. The density dynamics of stone cells in two loquat cultivars with different storage and transport tolerances were also investigated, which indicated that the cultivar with more stone cells was more tolerant to storage and transport. We suggest that wild loquat genetic resources containing stone cells in Eriobotrya plants can be used to gradually improve the storage and transport tolerance of loquat fruits.
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Affiliation(s)
- Shoukai Lin
- College of Environmental and Biological Engineering, Putian University, Putian, China
- Fujian Provincial Key Laboratory of Ecology-Toxicological Effects & Control for Emerging Contaminants, Putian University, Putian, China
| | - Dahe Lin
- College of Environmental and Biological Engineering, Putian University, Putian, China
- Fujian Provincial Key Laboratory of Ecology-Toxicological Effects & Control for Emerging Contaminants, Putian University, Putian, China
| | - Bisha Wu
- College of Environmental and Biological Engineering, Putian University, Putian, China
- Fujian Provincial Key Laboratory of Ecology-Toxicological Effects & Control for Emerging Contaminants, Putian University, Putian, China
| | - Shiwei Ma
- College of Environmental and Biological Engineering, Putian University, Putian, China
- Fujian Provincial Key Laboratory of Ecology-Toxicological Effects & Control for Emerging Contaminants, Putian University, Putian, China
| | - Shengfeng Sun
- College of Environmental and Biological Engineering, Putian University, Putian, China
| | - Ting Zhang
- College of Environmental and Biological Engineering, Putian University, Putian, China
| | - Wenting Zhang
- College of Environmental and Biological Engineering, Putian University, Putian, China
| | - Yunlu Bai
- College of Horticulture, South China Agricultural University, Guangzhou, China
| | - Qiong Wang
- College of Horticulture, South China Agricultural University, Guangzhou, China
| | - Jincheng Wu
- College of Environmental and Biological Engineering, Putian University, Putian, China
- Fujian Provincial Key Laboratory of Ecology-Toxicological Effects & Control for Emerging Contaminants, Putian University, Putian, China
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16
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Wei YN, Wang CY, Fu CQ, Liu HM, Qin Z, Wang XD. Structural changes of lignin-carbohydrate complexes (LCCs) from Chinese quince fruits during the sequential fractionation of pectic and hemicellulosic polysaccharides. Int J Biol Macromol 2021; 192:1256-1265. [PMID: 34673104 DOI: 10.1016/j.ijbiomac.2021.10.085] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/02/2021] [Revised: 09/02/2021] [Accepted: 10/12/2021] [Indexed: 10/20/2022]
Abstract
Chinese quince (Chaenomeles sinensis) fruits offer a potential source of pectin and hemicellulose. However, the existence of lignin-carbohydrate complexes (LCCs) can negatively impact the extraction of pectin and hemicellulose. In this work, LCCs were sequentially fractionated from Chinese quince during the removal of pectin and hemicellulose. The structures of LCCs were characterized by HPAEC, FT-IR, GPC, Py-GC/MS, TGA and 2D HSQC NMR. The results showed that the carbohydrate content and molecular weight of LCCs was found to be changed significantly after the removal of hemicellulose (KSH). The lignin in Björkman LCCs was found to be linked mainly to galactan and fructan, whereas the lignin LCC-AcOHs was found to be linked mainly to arabinan after the removal of KSH. The isolation of carbonate-soluble pectin (NSP) increased thermal stability of Björkman LCC fraction, however, the isolation of chelator-soluble pectin (CSP) increased the thermal stability of LCC-AcOHs. The S/G ratios of LCC-AcOHs increased and large amounts of S-type lignin released during sequential fractionation of pectin and hemicellulose. These results will be beneficial for understanding the mechanisms of pectin and hemicellulose isolation, thereby facilitating the potential application of Chinese quince as a valuable natural resource for food and other industries.
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Affiliation(s)
- Ya-Nan Wei
- College of Food Science and Technology, Henan University of Technology, Institute of Special Oilseed Processing and Technology, Henan University of Technology, Zhengzhou 450001, China
| | - Chu-Yong Wang
- College of Food Science and Technology, Henan University of Technology, Institute of Special Oilseed Processing and Technology, Henan University of Technology, Zhengzhou 450001, China
| | - Chao-Qiang Fu
- College of Food Science and Technology, Henan University of Technology, Institute of Special Oilseed Processing and Technology, Henan University of Technology, Zhengzhou 450001, China
| | - Hua-Min Liu
- College of Food Science and Technology, Henan University of Technology, Institute of Special Oilseed Processing and Technology, Henan University of Technology, Zhengzhou 450001, China.
| | - Zhao Qin
- College of Food Science and Technology, Henan University of Technology, Institute of Special Oilseed Processing and Technology, Henan University of Technology, Zhengzhou 450001, China
| | - Xue-De Wang
- College of Food Science and Technology, Henan University of Technology, Institute of Special Oilseed Processing and Technology, Henan University of Technology, Zhengzhou 450001, China
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17
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Cieśla J, Koczańska M, Pieczywek P, Szymańska-Chargot M, Cybulska J, Zdunek A. Structural properties of diluted alkali-soluble pectin from Pyrus communis L. in water and salt solutions. Carbohydr Polym 2021; 273:118598. [PMID: 34560998 DOI: 10.1016/j.carbpol.2021.118598] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/04/2021] [Revised: 08/18/2021] [Accepted: 08/19/2021] [Indexed: 10/20/2022]
Abstract
The self-assembly and gelation of low-methoxyl diluted alkali-soluble pectin (LM DASP) from pear fruit (Pyrus communis L. cv. Conference) was studied in water and salt solutions (NaCl and CaCl2, constant ionic strength) without pH adjustment at 20 °C. The samples at different LM DASP concentrations were characterized using rheological tests, Fourier-transform infrared spectroscopy, dual-angle dynamic light scattering and atomic force microscopy. LM DASP from pear fruit (Pyrus communis L.) showed gelling ability. The indices (aggregation index and shape factor) based on light scattering may be useful for the characterization of structural changes in polysaccharide suspension, particularly for the determination of a gel point. The results obtained may be important for the food, cosmetic and pharmaceutical industries where pectin is used as a texturizer, an encapsulating agent, a carrier of bioactive substances or a gelling agent.
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Affiliation(s)
- Jolanta Cieśla
- Institute of Agrophysics, Polish Academy of Sciences, Doświadczalna 4, 20-290 Lublin, Poland.
| | - Magdalena Koczańska
- Institute of Agrophysics, Polish Academy of Sciences, Doświadczalna 4, 20-290 Lublin, Poland
| | - Piotr Pieczywek
- Institute of Agrophysics, Polish Academy of Sciences, Doświadczalna 4, 20-290 Lublin, Poland
| | | | - Justyna Cybulska
- Institute of Agrophysics, Polish Academy of Sciences, Doświadczalna 4, 20-290 Lublin, Poland
| | - Artur Zdunek
- Institute of Agrophysics, Polish Academy of Sciences, Doświadczalna 4, 20-290 Lublin, Poland
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18
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Wang R, Xue Y, Fan J, Yao JL, Qin M, Lin T, Lian Q, Zhang M, Li X, Li J, Sun M, Song B, Zhang J, Zhao K, Chen X, Hu H, Fei Z, Xue C, Wu J. A systems genetics approach reveals PbrNSC as a regulator of lignin and cellulose biosynthesis in stone cells of pear fruit. Genome Biol 2021; 22:313. [PMID: 34776004 PMCID: PMC8590786 DOI: 10.1186/s13059-021-02531-8] [Citation(s) in RCA: 18] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/07/2021] [Accepted: 10/29/2021] [Indexed: 12/11/2022] Open
Abstract
BACKGROUND Stone cells in fruits of pear (Pyrus pyrifolia) negatively influence fruit quality because their lignified cell walls impart a coarse and granular texture to the fruit flesh. RESULTS We generate RNA-seq data from the developing fruits of 206 pear cultivars with a wide range of stone cell contents and use a systems genetics approach to integrate co-expression networks and expression quantitative trait loci (eQTLs) to characterize the regulatory mechanisms controlling lignocellulose formation in the stone cells of pear fruits. Our data with a total of 35,897 expressed genes and 974,404 SNPs support the identification of seven stone cell formation modules and the detection of 139,515 eQTLs for 3229 genes in these modules. Focusing on regulatory factors and using a co-expression network comprising 39 structural genes, we identify PbrNSC as a candidate regulator of stone cell formation. We then verify the function of PbrNSC in regulating lignocellulose formation using both pear fruit and Arabidopsis plants and further show that PbrNSC can transcriptionally activate multiple target genes involved in secondary cell wall formation. CONCLUSIONS This study generates a large resource for studying stone cell formation and provides insights into gene regulatory networks controlling the formation of stone cell and lignocellulose.
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Affiliation(s)
- Runze Wang
- College of Horticulture, State Key Laboratory of Crop Genetics and Germplasm Enhancement, Nanjing Agricultural University, Nanjing, 210095, China
| | - Yongsong Xue
- College of Horticulture, State Key Laboratory of Crop Genetics and Germplasm Enhancement, Nanjing Agricultural University, Nanjing, 210095, China
| | - Jing Fan
- Institute of Fruit and Tea, Hubei Academy of Agricultural Sciences, Wuhan, 430072, China
| | - Jia-Long Yao
- The New Zealand Institute for Plant & Food Research Limited, Auckland, 1025, New Zealand
| | - Mengfan Qin
- College of Horticulture, State Key Laboratory of Crop Genetics and Germplasm Enhancement, Nanjing Agricultural University, Nanjing, 210095, China
| | - Tao Lin
- Genome Analysis Laboratory of the Ministry of Agriculture, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, 518124, China
- College of Horticulture, China Agricultural University, Beijing, 100083, China
| | - Qun Lian
- Genome Analysis Laboratory of the Ministry of Agriculture, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, 518124, China
| | - Mingyue Zhang
- College of Horticulture, State Key Laboratory of Crop Genetics and Germplasm Enhancement, Nanjing Agricultural University, Nanjing, 210095, China
- State Key Laboratory of Crop Biology, College of Horticulture Science and Engineering, Shandong Agricultural University, Tai'an, 271018, China
| | - Xiaolong Li
- College of Horticulture, State Key Laboratory of Crop Genetics and Germplasm Enhancement, Nanjing Agricultural University, Nanjing, 210095, China
- Genome Analysis Laboratory of the Ministry of Agriculture, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, 518124, China
| | - Jiaming Li
- College of Horticulture, State Key Laboratory of Crop Genetics and Germplasm Enhancement, Nanjing Agricultural University, Nanjing, 210095, China
| | - Manyi Sun
- College of Horticulture, State Key Laboratory of Crop Genetics and Germplasm Enhancement, Nanjing Agricultural University, Nanjing, 210095, China
| | - Bobo Song
- College of Horticulture, State Key Laboratory of Crop Genetics and Germplasm Enhancement, Nanjing Agricultural University, Nanjing, 210095, China
| | - Jiaying Zhang
- College of Horticulture, State Key Laboratory of Crop Genetics and Germplasm Enhancement, Nanjing Agricultural University, Nanjing, 210095, China
| | - Kejiao Zhao
- College of Horticulture, State Key Laboratory of Crop Genetics and Germplasm Enhancement, Nanjing Agricultural University, Nanjing, 210095, China
| | - Xu Chen
- Haixia Institute of Science and Technology, Horticultural Plant Biology and Metabolomics Center, Fujian Agriculture and Forestry University, Fuzhou, 350002, China
| | - Hongju Hu
- Institute of Fruit and Tea, Hubei Academy of Agricultural Sciences, Wuhan, 430072, China
| | - Zhangjun Fei
- Boyce Thompson Institute, Cornell University, Ithaca, NY, 14853, USA.
- USDA-ARS, Robert W. Holley Center for Agriculture and Health, Ithaca, NY, 14853, USA.
| | - Cheng Xue
- State Key Laboratory of Crop Biology, College of Horticulture Science and Engineering, Shandong Agricultural University, Tai'an, 271018, China.
| | - Jun Wu
- College of Horticulture, State Key Laboratory of Crop Genetics and Germplasm Enhancement, Nanjing Agricultural University, Nanjing, 210095, China.
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19
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The Potential of Grape Pomace Varieties as a Dietary Source of Pectic Substances. Foods 2021; 10:foods10040867. [PMID: 33921097 PMCID: PMC8071402 DOI: 10.3390/foods10040867] [Citation(s) in RCA: 36] [Impact Index Per Article: 12.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/19/2021] [Revised: 04/11/2021] [Accepted: 04/13/2021] [Indexed: 11/24/2022] Open
Abstract
Grape pomace is one of the most abundant solid by-products generated during winemaking. A lot of products, such as ethanol, tartrates, citric acid, grape seed oil, hydrocolloids, bioactive compounds and dietary fiber are recovered from grape pomace. Grape pomace represents a major interest in the field of fiber extraction, especially pectin, as an alternative source to conventional ones, such as apple pomace and citrus peels, from which pectin is obtained by acid extraction and precipitation using alcohols. Understanding the structural and functional components of grape pomace will significantly aid in developing efficient extraction of pectin from unconventional sources. In recent years, natural biodegradable polymers, like pectin has invoked a big interest due to versatile properties and diverse applications in food industry and other fields. Thus, pectin extraction from grape pomace could afford a new reason for the decrease of environmental pollution and waste generation. This paper briefly describes the structure and composition of grape pomace of different varieties for the utilization of grape pomace as a source of pectin in food industry.
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20
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Mamat A, Tusong K, Xu J, Yan P, Mei C, Wang J. Integrated transcriptomic and proteomic analysis reveals the complex molecular mechanisms underlying stone cell formation in Korla pear. Sci Rep 2021; 11:7688. [PMID: 33833305 PMCID: PMC8032765 DOI: 10.1038/s41598-021-87262-3] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/27/2020] [Accepted: 03/25/2021] [Indexed: 11/09/2022] Open
Abstract
Korla pear (Pyrus sinkiangensis Yü) is a landrace selected from a hybrid pear species in the Xinjiang Autonomous Region in China. In recent years, pericarp roughening has been one of the major factors that adversely affects fruit quality. Compared with regular fruits, rough-skin fruits have a greater stone cell content. Stone cells compose sclerenchyma tissue that is formed by secondary thickening of parenchyma cell walls. In this work, we determined the main components of stone cells by isolating them from the pulp of rough-skin fruits at the ripening stage. Stone cell staining and apoptosis detection were then performed on fruit samples that were collected at three different developmental stages (20, 50 and 80 days after flowering (DAF)) representing the prime, late and stationary stages of stone cell differentiation, respectively. The same batches of samples were used for parallel transcriptomic and proteomic analysis to identify candidate genes and proteins that are related to SCW biogenesis in Korla pear fruits. The results showed that stone cells are mainly composed of cellulose (52%), hemicellulose (23%), lignin (20%) and a small amount of polysaccharides (3%). The periods of stone cell differentiation and cell apoptosis were synchronous and primarily occurred from 0 to 50 DAF. The stone cell components increased abundantly at 20 DAF but then decreased gradually. A total of 24,268 differentially expressed genes (DEGs) and 1011 differentially accumulated proteins (DAPs) were identified from the transcriptomic and proteomic data, respectively. We screened the DEGs and DAPs that were enriched in SCW-related pathways, including those associated with lignin biosynthesis (94 DEGs and 31 DAPs), cellulose and xylan biosynthesis (46 DEGs and 18 DAPs), S-adenosylmethionine (SAM) metabolic processes (10 DEGs and 3 DAPs), apoplastic ROS production (16 DEGs and 2 DAPs), and cell death (14 DEGs and 6 DAPs). Among the identified DEGs and DAPs, 63 significantly changed at both the transcript and protein levels during the experimental periods. In addition, the majority of these identified genes and proteins were expressed the most at the prime stage of stone cell differentiation, but their levels gradually decreased at the later stages.
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Affiliation(s)
- Aisajan Mamat
- Institute of Horticultural Crops, Xinjiang Academy of Agricultural Sciences, 403 Nanchang Road, Urumqi, 830091, China.
| | - Kuerban Tusong
- Institute of Horticultural Crops, Xinjiang Academy of Agricultural Sciences, 403 Nanchang Road, Urumqi, 830091, China
| | - Juan Xu
- Institute of Horticultural Crops, Xinjiang Academy of Agricultural Sciences, 403 Nanchang Road, Urumqi, 830091, China
| | - Peng Yan
- Institute of Horticultural Crops, Xinjiang Academy of Agricultural Sciences, 403 Nanchang Road, Urumqi, 830091, China
| | - Chuang Mei
- Institute of Horticultural Crops, Xinjiang Academy of Agricultural Sciences, 403 Nanchang Road, Urumqi, 830091, China
| | - Jixun Wang
- Institute of Horticultural Crops, Xinjiang Academy of Agricultural Sciences, 403 Nanchang Road, Urumqi, 830091, China
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21
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Peng J, Bi J, Yi J, Lyu J, Zhao Y, Xu Y, Yu Y. Characterization of tissue‐specific differences in cell wall pectic polysaccharides of carrot root. J FOOD PROCESS PRES 2021. [DOI: 10.1111/jfpp.15331] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Jian Peng
- Institute of Food Science and Technology Chinese Academy of Agricultural Sciences/Key Laboratory of Agro‐Products Processing Ministry of Agriculture and Rural Affairs Beijing China
- Sericultural & Agri‐Food Research Institute Guangdong Academy of Agricultural Sciences/Guangdong Key Laboratory of Agricultural Products Processing/Key Laboratory of Functional Foods Ministry of Agriculture and Rural Affairs Guangzhou China
| | - Jinfeng Bi
- Institute of Food Science and Technology Chinese Academy of Agricultural Sciences/Key Laboratory of Agro‐Products Processing Ministry of Agriculture and Rural Affairs Beijing China
| | - Jianyong Yi
- Institute of Food Science and Technology Chinese Academy of Agricultural Sciences/Key Laboratory of Agro‐Products Processing Ministry of Agriculture and Rural Affairs Beijing China
| | - Jian Lyu
- Institute of Food Science and Technology Chinese Academy of Agricultural Sciences/Key Laboratory of Agro‐Products Processing Ministry of Agriculture and Rural Affairs Beijing China
| | - Yuanyuan Zhao
- Institute of Food Science and Technology Chinese Academy of Agricultural Sciences/Key Laboratory of Agro‐Products Processing Ministry of Agriculture and Rural Affairs Beijing China
| | - Yujuan Xu
- Sericultural & Agri‐Food Research Institute Guangdong Academy of Agricultural Sciences/Guangdong Key Laboratory of Agricultural Products Processing/Key Laboratory of Functional Foods Ministry of Agriculture and Rural Affairs Guangzhou China
| | - Yuanshan Yu
- Sericultural & Agri‐Food Research Institute Guangdong Academy of Agricultural Sciences/Guangdong Key Laboratory of Agricultural Products Processing/Key Laboratory of Functional Foods Ministry of Agriculture and Rural Affairs Guangzhou China
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22
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Liu X, Renard CMGC, Bureau S, Le Bourvellec C. Revisiting the contribution of ATR-FTIR spectroscopy to characterize plant cell wall polysaccharides. Carbohydr Polym 2021; 262:117935. [PMID: 33838812 DOI: 10.1016/j.carbpol.2021.117935] [Citation(s) in RCA: 54] [Impact Index Per Article: 18.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/29/2021] [Revised: 03/10/2021] [Accepted: 03/10/2021] [Indexed: 12/23/2022]
Abstract
The contribution of ATR-FTIR spectroscopy to study cell wall polysaccharides (CWPs) was carefully investigated. The region 1800-800 cm-1 was exploited using principal component analysis and hierarchical clustering on a large range of different powders of CWPs based on their precise chemical characterization. Relevant wavenumbers were highlighted for each CWP: 1035 cm-1 was attributed to xylose-containing hemicelluloses, 1065 and 807 cm-1 to mannose-containing hemicelluloses, 988 cm-1 to cellulose, 1740 and 1600 cm-1 to homogalacturonans according to the degree of methylation. Some band positions were affected by macromolecular arrangements (especially hemicellulose-cellulose interactions). However, as arabinan and galactan did not reveal distinctive absorption bands, ATR-FTIR spectroscopy did not allow the discrimination of cell walls differing by the abundance of these polysaccharides, e.g., those extracted from apple and beet. Therefore, the application of ATR-FTIR could remain sometimes limited due to the complexity of overlapping spectra bands and vibrational coupling from the large diversity of CWP chemical bonds.
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Affiliation(s)
- Xuwei Liu
- INRAE, Avignon University, UMR SQPOV, F-84000, Avignon, France.
| | - Catherine M G C Renard
- INRAE, Avignon University, UMR SQPOV, F-84000, Avignon, France; INRAE, TRANSFORM, F-44000, Nantes, France.
| | - Sylvie Bureau
- INRAE, Avignon University, UMR SQPOV, F-84000, Avignon, France.
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23
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Cherif S, Le Bourvellec C, Bureau S, Benabda J. Effect of storage conditions on ‘Deglet Nour’ date palm fruit organoleptic and nutritional quality. Lebensm Wiss Technol 2021. [DOI: 10.1016/j.lwt.2020.110343] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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24
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Song J, Geng X, Su Y, Zhang X, Tu L, Zheng Y, Wang M. Structure feature and antidepressant-like activity of a novel exopolysaccharide isolated from Marasmius androsaceus fermentation broth. Int J Biol Macromol 2020; 165:1646-1655. [PMID: 33039535 DOI: 10.1016/j.ijbiomac.2020.10.015] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/10/2020] [Revised: 10/01/2020] [Accepted: 10/01/2020] [Indexed: 10/23/2022]
Abstract
The structure and antidepressant like activity of MEPS2 extracted from Marasmius androsaceus subjected to submerged fermentation was systematically studied. MEPS2 is a pyranoid polysaccharide composed of glucose and arabinose, which have a molar ratio of 0.56:0.08. The molecular weight was 85,944 Da. The NMR spectrum suggested the extracted MEPS2 contained uronic acid, and the glucosyl linkage was in α form, in accordance with the analysis of FT-IR spectrum. MEPS2 can considerably enhance the levels of noradrenalin (NE) and dopamine (DA) by ELISA. In addition, western blotting results indicated that MEPS2 can enhance the expression levels of TH, D2DR, and CAMKII. Furthermore, we found that AMPT, raclopride, and prazosin blocked the immobility and time-reducing effect of MEPS2. Overall, the antidepressant-like effect of MEPS2 may be involved in catecholamine synthesis and release, and TH, D2DR and CAMKII play an important role in this process.
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Affiliation(s)
- Jia Song
- State Key Laboratory of Food Nutrition and Safety, Key Laboratory of Industrial Fermentation Microbiology, Tianjin Engineering Research Center of Microbial Metabolism and Fermentation Process Control, College of Biotechnology, Tianjin University of Science & Technology, Tianjin 300457, China
| | - Xiaoqi Geng
- State Key Laboratory of Food Nutrition and Safety, Key Laboratory of Industrial Fermentation Microbiology, Tianjin Engineering Research Center of Microbial Metabolism and Fermentation Process Control, College of Biotechnology, Tianjin University of Science & Technology, Tianjin 300457, China
| | - Yan Su
- State Key Laboratory of Food Nutrition and Safety, Key Laboratory of Industrial Fermentation Microbiology, Tianjin Engineering Research Center of Microbial Metabolism and Fermentation Process Control, College of Biotechnology, Tianjin University of Science & Technology, Tianjin 300457, China
| | - Xiaoyu Zhang
- State Key Laboratory of Food Nutrition and Safety, Key Laboratory of Industrial Fermentation Microbiology, Tianjin Engineering Research Center of Microbial Metabolism and Fermentation Process Control, College of Biotechnology, Tianjin University of Science & Technology, Tianjin 300457, China
| | - Linna Tu
- State Key Laboratory of Food Nutrition and Safety, Key Laboratory of Industrial Fermentation Microbiology, Tianjin Engineering Research Center of Microbial Metabolism and Fermentation Process Control, College of Biotechnology, Tianjin University of Science & Technology, Tianjin 300457, China
| | - Yu Zheng
- State Key Laboratory of Food Nutrition and Safety, Key Laboratory of Industrial Fermentation Microbiology, Tianjin Engineering Research Center of Microbial Metabolism and Fermentation Process Control, College of Biotechnology, Tianjin University of Science & Technology, Tianjin 300457, China.
| | - Min Wang
- State Key Laboratory of Food Nutrition and Safety, Key Laboratory of Industrial Fermentation Microbiology, Tianjin Engineering Research Center of Microbial Metabolism and Fermentation Process Control, College of Biotechnology, Tianjin University of Science & Technology, Tianjin 300457, China.
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25
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Li G, Liu X, Zhang Y, Muhammad A, Han W, Li D, Cheng X, Cai Y. Cloning and functional characterization of two cinnamate 4-hydroxylase genes from Pyrus bretschneideri. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2020; 156:135-145. [PMID: 32937268 DOI: 10.1016/j.plaphy.2020.07.035] [Citation(s) in RCA: 17] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/08/2020] [Revised: 07/17/2020] [Accepted: 07/18/2020] [Indexed: 06/11/2023]
Abstract
Cinnamate 4-hydroxylase (C4H) is a key enzyme in the phenylpropanoid pathway in plants and is involved in the biosynthesis of secondary metabolites such as lignin and flavonoids. However, the function of C4H in pear plants (Pyrus bretschneideri) has not yet been fully elucidated. By searching pear genome databases, we identified three C4H genes (PbC4H1, PbC4H2 and PbC4H3) encoding proteins that share higher identity with bonafide C4Hs from several species with typical cytochrome P450 domains, suggesting that all three PbC4Hs are also bonafide C4Hs that have close evolutionary relationships with C4Hs from other land plants. Quantitative real-time PCR (qRT-PCR) results indicated that the three PbC4Hs were specifically expressed in one or more tissues. The expression levels of PbC4H1 and PbC4H3 first increased and then decreased during pear fruit development. Treatment with exogenous hormones (ABA, MeJA, and SA) altered the expression of the three PbC4Hs to varying degrees. The expression levels of the PbC4Hs were first induced and then decreased under ABA treatment, while MeJA treatment significantly increased the expression levels of the PbC4Hs. Following treatment with SA, expression levels of PbC4H1 and PbC4H2 increased, while expression levels of PbC4H3 decreased. Enzymatic analysis of the recombinant proteins expressed in yeast indicated that PbC4H1 and PbC4H3 catalysed the conversion of trans-cinnamic acid to p-coumaric acid. Moreover, the expression of PbC4H1 and PbC4H3 in Arabidopsis resulted in an increase in both the lignin content and the thickness of cell walls for intervascular fibres and xylem cells. Taken together, the results of our study not only revealed the potential role of PbC4H1 and PbC4H3 in lignin biosynthesis but also established a foundation for future investigations of the regulation of lignin synthesis and stone cell development in pear fruit by molecular biological techniques.
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Affiliation(s)
- Guohui Li
- School of Life Science, Anhui Agricultural University, No. 130, Changjiang West Road, Hefei, 230036, China.
| | - Xin Liu
- School of Life Science, Anhui Agricultural University, No. 130, Changjiang West Road, Hefei, 230036, China
| | - Yang Zhang
- School of Life Science, Anhui Agricultural University, No. 130, Changjiang West Road, Hefei, 230036, China
| | - Abdullah Muhammad
- School of Life Science, Anhui Agricultural University, No. 130, Changjiang West Road, Hefei, 230036, China
| | - Wenlong Han
- School of Life Science, Anhui Agricultural University, No. 130, Changjiang West Road, Hefei, 230036, China
| | - Dahui Li
- School of Life Science, Anhui Agricultural University, No. 130, Changjiang West Road, Hefei, 230036, China
| | - Xi Cheng
- School of Life Science, Anhui Agricultural University, No. 130, Changjiang West Road, Hefei, 230036, China
| | - Yongping Cai
- School of Life Science, Anhui Agricultural University, No. 130, Changjiang West Road, Hefei, 230036, China.
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26
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Dong W, Li L, Cao R, Xu S, Cheng L, Yu M, Lv Z, Lu G. Changes in cell wall components and polysaccharide-degrading enzymes in relation to differences in texture during sweetpotato storage root growth. JOURNAL OF PLANT PHYSIOLOGY 2020; 254:153282. [PMID: 32992132 DOI: 10.1016/j.jplph.2020.153282] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/28/2020] [Revised: 08/28/2020] [Accepted: 09/02/2020] [Indexed: 06/11/2023]
Abstract
Sweetpotato has special texture characteristics, which directly affect the eating quality and post-production processing quality of sweetpotato. To investigate the texture change mechanism of sweetpotato during the growth process, this study selected two varieties with significant differences in texture from 35 varieties. The storage roots were sampled at 50, 80, 110, and 140 days after planting. Measure the texture parameters, the cell wall composition content, cell wall-related enzyme activities and the expression of expansin genes of sweetpotato storage roots. The results show that the hardness, adhesiveness and chewiness parameters of 'Yushu No 10' were significantly lower than those of 'Mianfen No 1', they have significantly different texture properties. In terms of cell wall composition, the soluble pectin content of 'Yushu No 10' was more than twice that of 'Mianfen No 1', whereas the insoluble pectin content was lower than that of 'Mianfen No 1', with the cellulose content of 'Yushu No 10' being significantly higher than that of 'Mianfen No 1'. In terms of cell wall-related enzymes, 'Yushu No 10' hardness gumminess and chewiness had a significant correlation with hemicellulose activity, and 'Mianfen No 1' had insignificant correlation with four cell wall-related enzymes. Expansin genes were also expressed differently during the various stages of root tubers expansin. The expressions of IbEXP1, IbEXP2 and IbEXPL1 were significantly correlated with the changes in cell wall component content, and were related to the qualitative structure changes. The research conclusion shows that the texture changes during the growth of sweetpotato are related to cell wall composition, cell wall-related enzyme activity changes, and the expression of expansin genes. This study provides theoretical guidance for in-depth study of texture changes of sweetpotato, post-harvest processing and utilization and quality improvement of storage roots.
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Affiliation(s)
- Wei Dong
- School of Agriculture and Food Science, Zhejiang A&F University, Hangzhou, Zhejiang 311300, China
| | - Ling Li
- School of Agriculture and Food Science, Zhejiang A&F University, Hangzhou, Zhejiang 311300, China
| | - Ruxia Cao
- School of Agriculture and Food Science, Zhejiang A&F University, Hangzhou, Zhejiang 311300, China
| | - Shu Xu
- School of Agriculture and Food Science, Zhejiang A&F University, Hangzhou, Zhejiang 311300, China
| | - Lingling Cheng
- School of Agriculture and Food Science, Zhejiang A&F University, Hangzhou, Zhejiang 311300, China
| | - Minyi Yu
- School of Agriculture and Food Science, Zhejiang A&F University, Hangzhou, Zhejiang 311300, China
| | - Zunfu Lv
- School of Agriculture and Food Science, Zhejiang A&F University, Hangzhou, Zhejiang 311300, China
| | - Guoquan Lu
- School of Agriculture and Food Science, Zhejiang A&F University, Hangzhou, Zhejiang 311300, China.
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27
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Changes in cell wall neutral sugar composition related to pectinolytic enzyme activities and intra-flesh textural property during ripening of ten apricot clones. Food Chem 2020; 339:128096. [PMID: 32979713 DOI: 10.1016/j.foodchem.2020.128096] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/08/2020] [Revised: 09/09/2020] [Accepted: 09/11/2020] [Indexed: 11/23/2022]
Abstract
The changes of texture and cell wall characteristics of apricot were investigated in ten clones at two maturity stages. Fruit firmness, cell wall composition and enzyme activity of three apricot flesh zones were analysed. The AIS (alcohol-insoluble solids) were characterised by high amounts of uronic acid (179-300 mg g-1 AIS) and relatively high amounts of cellulosic glucose (118-214 mg g-1 AIS). The methylesterification degree varied significantly among the different clones ranging from 58 to 97 in Ab 5 and Mans 15 respectively. Conversely to zones firmness, enzymatic activity was higher in pistil followed by equatorial and peduncle zones. The ripening effect has been observed in firmness evolution according to enzymatic activity. This correlation allowed a classification of clones depending on softening. Among studied clones, Ab 5, Marouch 16, Mans 15 and Cg 2 were less influenced by softening and have the advantage of a technological valorisation for the processing industry.
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28
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Brahem M, Bornard I, Renard CMGC, Le Bourvellec C. Multiscale Localization of Procyanidins in Ripe and Overripe Perry Pears by Light and Transmission Electron Microscopy. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2020; 68:8900-8906. [PMID: 32706965 DOI: 10.1021/acs.jafc.0c02036] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
Abstract
Histochemical staining with 4-dimethylaminocinnamaldehyde (DMACA), light microscopy, and transmission electron microscopy (TEM) were applied to characterize procyanidin localization at ripe and overripe stages in perry pear flesh (cv. 'De Cloche'). Pear flesh contained stone cell clusters surrounded by very large parenchyma cells. DMACA staining showed procyanidins mainly located in parenchyma cells from the fruit mesocarp. Under light microscopy and TEM, procyanidins appeared in the vacuole of parenchyma cells as uniformly stained granules, probably tannosomes. They were differently dispersed in ripe and overripe perry pears, as the granules remained free inside the vacuole in ripe pears and mostly attached to the tonoplast in overripe pears.
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Affiliation(s)
- Marwa Brahem
- UMR408 SQPOV, INRAE, Avignon Université, F-84000 Avignon, France
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29
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Nunes CFP, de Oliveira IR, Storch TT, Rombaldi CV, Orsel-Baldwin M, Renou JP, Laurens F, Girardi CL. Technical benefit on apple fruit of controlled atmosphere influenced by 1-MCP at molecular levels. Mol Genet Genomics 2020; 295:1443-1457. [PMID: 32700103 DOI: 10.1007/s00438-020-01712-7] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/22/2019] [Accepted: 07/11/2020] [Indexed: 11/30/2022]
Abstract
The apple is a highly perishable fruit after harvesting and, therefore, several storage technologies have been studied to provide the consumer market with a quality product with a longer shelf life. However, little is known about the apple genome that is submitted to the storage, and even less with the application of ripening inhibitors. Due to these factors, this study sought to elucidate the transcriptional profile of apple cultivate Gala stored in a controlled atmosphere (AC) treated and not treated with 1-methyl cyclopropene (1-MCP). Through the genetic mapping of the apple, applying the microarray technique, it was possible to verify the action of treatments on transcripts related to photosynthesis, carbohydrate metabolism, response to hormonal stimuli, nucleic acid metabolism, reduction of oxidation, regulation of transcription and metabolism of cell wall and lipids. The results showed that the transcriptional profile in the entire genome of the fruit showed significant differences in the relative expression of the gene, this in response to CA in the presence and absence of 1-MCP. It should be noted that the transcription genes involved in the anabolic pathway were only maintained after six months in fruits treated with 1-MCP. The data in this work suggests that the apple in the absence of 1-MCP begins to prepare its metabolism to mature, even during the storage period in AC. Meanwhile, in the presence of the inhibitor, the transcriptional profile of the fruit is similar to that at the time of harvest. It was also found that a set of genes that code for ethylene receptors, auxin homeostasis, MADS Box, and NAC transcription factors may be involved in the regulation of post-harvest ripening after storage and in the absence of 1-MCP.
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Affiliation(s)
- Camila Francine Paes Nunes
- Departamento de Ciência e Tecnologia Agroindustrial, Faculdade de Agronomia Eliseu 'Maciel', Universidade Federal de Pelotas, Pelota, RS, 96050-500, Brazil
| | | | - Tatiane Timm Storch
- Departamento de Ciência e Tecnologia Agroindustrial, Faculdade de Agronomia Eliseu 'Maciel', Universidade Federal de Pelotas, Pelota, RS, 96050-500, Brazil
| | - Cesar Valmor Rombaldi
- Departamento de Ciência e Tecnologia Agroindustrial, Faculdade de Agronomia Eliseu 'Maciel', Universidade Federal de Pelotas, Pelota, RS, 96050-500, Brazil
| | - Mathilde Orsel-Baldwin
- Bâtiment B, Institut de Recherche en Horticulture et Semences IRHS, Institut National de La Recherche Agronomique INRA, 49071, Beaucouzé, France
| | - Jean-Pierre Renou
- Bâtiment B, Institut de Recherche en Horticulture et Semences IRHS, Institut National de La Recherche Agronomique INRA, 49071, Beaucouzé, France
| | - François Laurens
- Bâtiment B, Institut de Recherche en Horticulture et Semences IRHS, Institut National de La Recherche Agronomique INRA, 49071, Beaucouzé, France
| | - César Luis Girardi
- EMBRAPA Uva e Vinho, R. Livramento 515, Bento Gonçalves, RS, 957000-000, Brazil
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30
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Effects of Metaxenia on Stone Cell Formation in Pear (Pyrus bretschneideri) Based on Transcriptomic Analysis and Functional Characterization of the Lignin-Related Gene PbC4H2. FORESTS 2020. [DOI: 10.3390/f11010053] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
The deposition of lignin in flesh parenchyma cells for pear stone cells, and excessive stone cells reduce the taste and quality of the fruit. The effect of metaxenia on the quality of fruit has been heavily studied, but the effect of metaxenia on stone cell formation has not been fully elucidated to date. This study used P. bretschneideri (Chinese white pear) cv. ‘Yali’ (high-stone cell content) and P. pyrifolia (Sand pear) cv. ‘Cuiguan’ (low-stone cell content) as pollination trees to pollinate P. bretschneideri cv. ‘Lianglizaosu’ separately to fill this gap in the literature. The results of quantitative determination, histochemical staining and electron microscopy indicated that the content of stone cells and lignin in YL fruit (‘Yali’ (pollen parent) × ‘Lianglizaosu’ (seed parent)) was significantly higher than that in CL fruit (‘Cuiguan’ (pollen parent) × ‘Lianglizaosu’ (seed parent)). The transcriptome sequencing results that were obtained from the three developmental stages of the two types of hybrid fruits indicated that a large number of differentially expressed genes (DEGs) related to auxin signal transduction (AUX/IAAs and ARFs), lignin biosynthesis, and lignin metabolism regulation (MYBs, LIMs, and KNOXs) between the CL and YL fruits at the early stage of fruit development. Therefore, metaxenia might change the signal transduction process of auxin in pear fruit, thereby regulating the expression of transcription factors (TFs) related to lignin metabolism, and ultimately affecting lignin deposition and stone cell development. In addition, we performed functional verification of a differentially expressed gene, PbC4H2 (cinnamate 4-hydroxylase). Heterologous expression of PbC4H2 in the c4h mutant not only restored its collapsed cell wall, but also significantly increased the lignin content in the inflorescence stem. The results of our research help to elucidate the metaxenia-mediated regulation of pear stone cell development and clarify the function of PbC4H2 in cell wall development and lignin synthesis, which establishes a foundation for subsequent molecular breeding.
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31
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Effects of 1-Methylcyclopropene Combined with Modified Atmosphere on Quality of Fig (Ficus carica L.) during Postharvest Storage. J FOOD QUALITY 2019. [DOI: 10.1155/2019/2134924] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/23/2023] Open
Abstract
Fig (Ficus carica L.) is a highly nutritious fruit, which is rich in sugar, protein, amino acids, vitamins, and mineral elements. However, figs are perishable climacteric fruits, causing difficulty in postharvest storage and preservation. 1-Methylcyclopropene (1-MCP) and modified atmosphere (MA) are preservation methods with many applications, but the effects of their combination on quality of fig during postharvest storage have rarely been studied. The objective of this study was to investigate the effects of MA and MA+1-MCP treatments on postharvest quality of fig fruit stored at −1 ± 0.5°C for 30 days. The results showed that the MA+1-MCP treatment significantly improved the fruit texture, reduced the weight loss rate and malonaldehyde (MDA) accumulation, and inhibited the ethylene production and respiration rate compared with that in the control and MA groups. In summary, the MA+1-MCP treatment will be a good preservation method to maintain fruit quality of figs during postharvest storage.
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32
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Su X, Zhao Y, Wang H, Li G, Cheng X, Jin Q, Cai Y. Transcriptomic analysis of early fruit development in Chinese white pear (Pyrus bretschneideri Rehd.) and functional identification of PbCCR1 in lignin biosynthesis. BMC PLANT BIOLOGY 2019; 19:417. [PMID: 31604417 PMCID: PMC6788021 DOI: 10.1186/s12870-019-2046-x] [Citation(s) in RCA: 22] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/14/2019] [Accepted: 09/20/2019] [Indexed: 05/02/2023]
Abstract
BACKGROUND The content of stone cells and lignin is one of the key factors affecting the quality of pear fruit. In a previous study, we determined the developmental regularity of stone cells and lignin in 'Dangshan Su' pear fruit 15-145 days after pollination (DAP). However, the development of fruit stone cells and lignin before 15 DAP has not been heavily researched. RESULTS In this study, we found that primordial stone cells began to appear at 7 DAP and that the fruit had formed a large number of stone cells at 15 DAP. Subsequently, transcriptome sequencing was performed on fruits at 0, 7, and 15 DAP and identified 3834 (0 vs. 7 DAP), 4049 (7 vs. 15 DAP) and 5763 (0 vs. 15 DAP) DEGs. During the 7-15 DAP period, a large number of key enzyme genes essential for lignin biosynthesis are gradually up-regulated, and their expression pattern is consistent with the accumulation of lignin in this period. Further analysis found that the biosynthesis of S-type lignin in 'Dangshan Su' pear does not depend on the catalytic activity of PbSAD but is primarily generated by the catalytic activity of caffeoyl-CoA through CCoAOMT, CCR, F5H, and CAD. We cloned PbCCR1, 2 and analysed their functions in Chinese white pear lignin biosynthesis. PbCCR1 and 2 have a degree of functional redundancy; both demonstrate the ability to participate in lignin biosynthesis. However, PbCCR1 may be the major gene for lignin biosynthesis, while PbCCR2 has little effect on lignin biosynthesis. CONCLUSIONS Our results revealed that 'Dangshan Su' pear began to form a large number of stone cells and produce lignin after 7 DAP and mainly accumulated materials from 0 to 7 DAP. PbCCR1 is mainly involved in the biosynthesis of lignin in 'Dangshan Su' pear and plays a positive role in lignin biosynthesis.
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Affiliation(s)
- Xueqiang Su
- School of Life Science, Anhui Agricultural University, Hefei, Anhui China
| | - Yu Zhao
- School of Life Science, Anhui Agricultural University, Hefei, Anhui China
| | - Han Wang
- School of Life Science, Anhui Agricultural University, Hefei, Anhui China
| | - Guohui Li
- School of Life Science, Anhui Agricultural University, Hefei, Anhui China
| | - Xi Cheng
- School of Life Science, Anhui Agricultural University, Hefei, Anhui China
| | - Qing Jin
- School of Life Science, Anhui Agricultural University, Hefei, Anhui China
| | - Yongping Cai
- School of Life Science, Anhui Agricultural University, Hefei, Anhui China
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33
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Cheng X, Li M, Abdullah M, Li G, Zhang J, Manzoor MA, Wang H, Jin Q, Jiang T, Cai Y, Li D, Lin Y. In Silico Genome-Wide Analysis of the Pear ( Pyrus bretschneideri) KNOX Family and the Functional Characterization of PbKNOX1, an Arabidopsis BREVIPEDICELLUS Orthologue Gene, Involved in Cell Wall and Lignin Biosynthesis. Front Genet 2019; 10:632. [PMID: 31333718 PMCID: PMC6624237 DOI: 10.3389/fgene.2019.00632] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/14/2019] [Accepted: 06/17/2019] [Indexed: 12/18/2022] Open
Abstract
Stone cells are a characteristic trait of pear fruit, but the contents and sizes of stone cells negatively correlate with fruit texture and flavor. Secondary cell wall thickening and lignification have been established as key steps of stone cell development. KNOTTED-LIKE HOMEOBOX (KNOX) proteins play important roles in plant cell growth and development, including cell wall formation and lignification. Although the characteristics and biological functions of KNOX proteins have been investigated in other plants, this gene family has not been functionally characterized in pear. Eighteen PbKNOX genes were identified in the present study, and all of the identified family members contained the KNOX I and/or KNOX II domains. Based on the phylogenetic tree and chromosomal localization, the 18 PbKNOX genes were divided into five subfamilies [SHOOT MERISTEMLESS (STM)-like, BREVIPEDICELLUS (BP)-like, KNOTTED ARABIDOPSIS THALIANA 2/6 (KNAT2/6)-like, KNAT7-like, and KNAT3-5-like] and were distributed among 10 chromosomes. In addition, we identified 9, 11, and 11 KNOX genes in the genomes of grape, mei, and strawberry, respectively, and the greatest number of collinear KNOX gene pairs formed between pears and peaches. Analyses of the spatiotemporal expression patterns showed that the tissue specificity of PbKNOX gene expression was not very significant and that the level of the PbKNOX1 transcript showed an opposite trend to the levels of stone cells and lignin accumulation. Furthermore, PbKNOX1 has high sequence identity and similarity with Arabidopsis BP. Compared with wild-type Arabidopsis, plants overexpressing PbKNOX1 not only showed an approximately 19% decrease in the secondary cell wall thickness of vessel cells but also exhibited an approximately 13% reduction in the lignin content of inflorescence stems. Moreover, the expression of several genes involved in lignin biosynthesis was downregulated in transgenic lines. Based on our results, PbKNOX1/BP participates in cell wall-thickening and lignin biosynthesis and represses the transcription of key structural genes involved in lignin synthesis, providing genetic evidence for the roles of KNOX in cell wall thickening and lignin biosynthesis in pear.
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Affiliation(s)
- Xi Cheng
- School of Life Science, Anhui Agricultural University, Hefei, China
| | - Manli Li
- School of Life Science, Anhui Agricultural University, Hefei, China
| | | | - Guohui Li
- School of Life Science, Anhui Agricultural University, Hefei, China
| | - Jingyun Zhang
- School of Life Science, Anhui Agricultural University, Hefei, China.,Horticultural Institute, Anhui Academy of Agricultural Sciences, Hefei, China
| | | | - Han Wang
- School of Life Science, Anhui Agricultural University, Hefei, China
| | - Qing Jin
- School of Life Science, Anhui Agricultural University, Hefei, China
| | - Taoshan Jiang
- School of Life Science, Anhui Agricultural University, Hefei, China
| | - Yongping Cai
- School of Life Science, Anhui Agricultural University, Hefei, China
| | - Dahui Li
- School of Life Science, Anhui Agricultural University, Hefei, China
| | - Yi Lin
- School of Life Science, Anhui Agricultural University, Hefei, China
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Cheng X, Li G, Manzoor MA, Wang H, Abdullah M, Su X, Zhang J, Jiang T, Jin Q, Cai Y, Lin Y. In Silico Genome-Wide Analysis of Respiratory Burst Oxidase Homolog (RBOH) Family Genes in Five Fruit-Producing Trees, and Potential Functional Analysis on Lignification of Stone Cells in Chinese White Pear. Cells 2019; 8:E520. [PMID: 31146469 PMCID: PMC6627160 DOI: 10.3390/cells8060520] [Citation(s) in RCA: 26] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/08/2019] [Revised: 05/22/2019] [Accepted: 05/28/2019] [Indexed: 02/06/2023] Open
Abstract
: The accumulation of lignin in fruit has a significant negative impact on the quality of fruit-producing trees, and in particular the lignin formation stimulates the development of stone cells in pear fruit. Reactive oxygen species (ROS) are essential for lignin polymerization. However, knowledge of the RBOH family, a key enzyme in ROS metabolism, remains unknown in most fruit trees. In this study, a total of 40 RBOHs were identified from five fruit-producing trees (Pyrusbretschneideri, Prunuspersica, Citrussinensis, Vitisvinifera, and Prunusmume), and 10 of these sequences came from Pyrusbretschneideri. Multiple sequence alignments revealed that all 10 PbRBOHs contained the NADPH_Ox domain and the six alpha-helical transmembrane domains (TM-I to TM-VI). Chromosome localization and interspecies phylogenetic tree analysis showed that 10 PbRBOHs irregularly distributed on 8 chromosomes and 3 PbRBOHs (PbRBOHA, PbRBOHB, and PbRBOHD) are closely related to known lignification-related RBOHs. Furthermore, hormone response pattern analysis showed that the transcription of PbRBOHs is regulated by SA, ABA and MeJA. Reverse transcription-quantitative real-time polymerase chain reaction (qRT-PCR) and transcriptome sequencing analysis showed that PbRBOHA, PbRBOHB, and PbRBOHD accumulated high transcript abundance in pear fruit, and the transcriptional trends of PbRBOHA and PbRBOHD was consistent with the change of stone cell content during fruit development. In addition, subcellular localization revealed that PbRBOHA and PbRBOHD are distributed on the plasma membrane. Combining the changes of apoplastic superoxide (O2.-) content and spatio-temporal expression analysis, these results indicate that PbRBOHA and PbRBOHD, which are candidate genes, may play an important role in ROS metabolism during the lignification of pear stone cells. This study not only provided insight into the molecular characteristics of the RBOH family in fruit-producing trees, but also lays the foundation for studying the role of ROS in plant lignification.
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Affiliation(s)
- Xi Cheng
- School of Life Science, Anhui Agricultural University, No. 130, Changjiang West Road, Hefei 230036, China.
| | - Guohui Li
- School of Life Science, Anhui Agricultural University, No. 130, Changjiang West Road, Hefei 230036, China.
| | - Muhammad Aamir Manzoor
- School of Life Science, Anhui Agricultural University, No. 130, Changjiang West Road, Hefei 230036, China.
| | - Han Wang
- School of Life Science, Anhui Agricultural University, No. 130, Changjiang West Road, Hefei 230036, China.
| | - Muhammad Abdullah
- School of Life Science, Anhui Agricultural University, No. 130, Changjiang West Road, Hefei 230036, China.
| | - Xueqiang Su
- School of Life Science, Anhui Agricultural University, No. 130, Changjiang West Road, Hefei 230036, China.
| | - Jingyun Zhang
- Horticultural Institute, Anhui Academy of Agricultural Sciences, Hefei, Anhui 230031, China.
| | - Taoshan Jiang
- School of Life Science, Anhui Agricultural University, No. 130, Changjiang West Road, Hefei 230036, China.
| | - Qing Jin
- School of Life Science, Anhui Agricultural University, No. 130, Changjiang West Road, Hefei 230036, China.
| | - Yongping Cai
- School of Life Science, Anhui Agricultural University, No. 130, Changjiang West Road, Hefei 230036, China.
| | - Yi Lin
- School of Life Science, Anhui Agricultural University, No. 130, Changjiang West Road, Hefei 230036, China.
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Lemaire-Chamley M, Mounet F, Deborde C, Maucourt M, Jacob D, Moing A. NMR-Based Tissular and Developmental Metabolomics of Tomato Fruit. Metabolites 2019; 9:metabo9050093. [PMID: 31075946 PMCID: PMC6571556 DOI: 10.3390/metabo9050093] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/11/2019] [Revised: 04/30/2019] [Accepted: 05/07/2019] [Indexed: 11/30/2022] Open
Abstract
Fruit is a complex organ containing seeds and several interconnected tissues with dedicated roles. However, most biochemical or molecular studies about fleshy fruit development concern the entire fruit, the fruit without seeds, or pericarp only. We studied tomato (Solanum lycopersicum) fruit at four stages of development (12, 20, 35, and 45 days post-anthesis). We separated the seeds and the other tissues, exocarp, mesocarp, columella with placenta and locular tissue, and analyzed them individually using proton NMR metabolomic profiling for the quantification of major polar metabolites, enzymatic analysis of starch, and LC-DAD analysis of isoprenoids. Pericarp tissue represented about half of the entire fruit mass only. The composition of each fruit tissue changed during fruit development. An ANOVA-PCA highlighted common, and specific metabolite trends between tissues e.g., higher contents of chlorogenate in locular tissue and of starch in columella. Euclidian distances based on compositional data showed proximities within and between tissues. Several metabolic regulations differed between tissues as revealed by the comparison of metabolite networks based on correlations between compounds. This work stressed the role of specific tissues less studied than pericarp but that impact fruit organoleptic quality including its shape and taste, and fruit processing quality.
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Affiliation(s)
- Martine Lemaire-Chamley
- UMR1332 Biologie du Fruit et Pathologie, INRA, University Bordeaux, Centre INRA de Nouvelle Aquitaine-Bordeaux, 71 av Edouard Bourlaux, 33140 Villenave d'Ornon, France.
| | - Fabien Mounet
- UMR1332 Biologie du Fruit et Pathologie, INRA, University Bordeaux, Centre INRA de Nouvelle Aquitaine-Bordeaux, 71 av Edouard Bourlaux, 33140 Villenave d'Ornon, France.
| | - Catherine Deborde
- UMR1332 Biologie du Fruit et Pathologie, INRA, University Bordeaux, Centre INRA de Nouvelle Aquitaine-Bordeaux, 71 av Edouard Bourlaux, 33140 Villenave d'Ornon, France.
- Plateforme Métabolome du Centre de Génomique Fonctionnelle Bordeaux, MetaboHUB, IBVM, Centre INRA de Nouvelle Aquitaine-Bordeaux, 71 av Edouard Bourlaux, 33140 Villenave d'Ornon, France.
| | - Mickaël Maucourt
- UMR1332 Biologie du Fruit et Pathologie, INRA, University Bordeaux, Centre INRA de Nouvelle Aquitaine-Bordeaux, 71 av Edouard Bourlaux, 33140 Villenave d'Ornon, France.
- Plateforme Métabolome du Centre de Génomique Fonctionnelle Bordeaux, MetaboHUB, IBVM, Centre INRA de Nouvelle Aquitaine-Bordeaux, 71 av Edouard Bourlaux, 33140 Villenave d'Ornon, France.
| | - Daniel Jacob
- UMR1332 Biologie du Fruit et Pathologie, INRA, University Bordeaux, Centre INRA de Nouvelle Aquitaine-Bordeaux, 71 av Edouard Bourlaux, 33140 Villenave d'Ornon, France.
- Plateforme Métabolome du Centre de Génomique Fonctionnelle Bordeaux, MetaboHUB, IBVM, Centre INRA de Nouvelle Aquitaine-Bordeaux, 71 av Edouard Bourlaux, 33140 Villenave d'Ornon, France.
| | - Annick Moing
- UMR1332 Biologie du Fruit et Pathologie, INRA, University Bordeaux, Centre INRA de Nouvelle Aquitaine-Bordeaux, 71 av Edouard Bourlaux, 33140 Villenave d'Ornon, France.
- Plateforme Métabolome du Centre de Génomique Fonctionnelle Bordeaux, MetaboHUB, IBVM, Centre INRA de Nouvelle Aquitaine-Bordeaux, 71 av Edouard Bourlaux, 33140 Villenave d'Ornon, France.
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Canteri MH, Renard CM, Le Bourvellec C, Bureau S. ATR-FTIR spectroscopy to determine cell wall composition: Application on a large diversity of fruits and vegetables. Carbohydr Polym 2019; 212:186-196. [DOI: 10.1016/j.carbpol.2019.02.021] [Citation(s) in RCA: 32] [Impact Index Per Article: 6.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/21/2018] [Revised: 02/06/2019] [Accepted: 02/07/2019] [Indexed: 01/07/2023]
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Brahem M, Renard CM, Bureau S, Watrelot AA, Le Bourvellec C. Pear ripeness and tissue type impact procyanidin-cell wall interactions. Food Chem 2019; 275:754-762. [DOI: 10.1016/j.foodchem.2018.09.156] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/11/2018] [Revised: 09/21/2018] [Accepted: 09/24/2018] [Indexed: 10/28/2022]
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38
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Cheng X, Li G, Ma C, Abdullah M, Zhang J, Zhao H, Jin Q, Cai Y, Lin Y. Comprehensive genome-wide analysis of the pear (Pyrus bretschneideri) laccase gene (PbLAC) family and functional identification of PbLAC1 involved in lignin biosynthesis. PLoS One 2019; 14:e0210892. [PMID: 30753186 PMCID: PMC6372139 DOI: 10.1371/journal.pone.0210892] [Citation(s) in RCA: 17] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/25/2018] [Accepted: 01/03/2019] [Indexed: 11/19/2022] Open
Abstract
The content and size of stone cell clusters affects the quality of pear fruit, and monolignol polymerization and deposition in the cell walls constitute a required step for stone cell formation. Laccase (LAC) is the key enzyme responsible for the polymerization of monolignols. However, there are no reports on the LAC family in pear (Pyrus bretschneideri), and the identity of the members responsible for lignin synthesis has not been clarified. Here, 41 LACs were identified in the whole genome of pear. All Pyrus bretschneideri LACs (PbLACs) were distributed on 13 chromosomes and divided into four phylogenetic groups (I-IV). In addition, 16 segmental duplication events were found, implying that segmental duplication was a primary reason for the expansion of the PbLAC family. LACs from the genomes of three Rosaceae species (Prunus mummer, Prunus persica, and Fragaria vesca) were also identified, and an interspecies collinearity analysis was performed. The phylogenetic analysis, sequence alignments and spatiotemporal expression pattern analysis suggested that PbLAC1, 5, 6, 29, 36 and 38 were likely associated with lignin synthesis and stone cell formation in fruit. The two target genes of Pyr-miR1890 (a microRNA identified from pear fruit that is associated with lignin and stone cell accumulation), PbLAC1 and PbLAC14, were selected for genetic transformation. Interfamily transfer of PbLAC1 into Arabidopsis resulted in a significant increase (approximately 17%) in the lignin content and thicker cell walls in interfascicular fibre and xylem cells, which demonstrated that PbLAC1 is involved in lignin biosynthesis and cell wall development. However, the lignin content and cell wall thickness were not changed significantly in the PbLAC14-overexpressing transgenic Arabidopsis plants. This study revealed the function of PbLAC1 in lignin synthesis and provides important insights into the characteristics and evolution of the PbLAC family.
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Affiliation(s)
- Xi Cheng
- School of Life Science, Anhui Agricultural University, Hefei, China
| | - Guohui Li
- School of Life Science, Anhui Agricultural University, Hefei, China
| | - Chenhui Ma
- School of Life Science, Anhui Agricultural University, Hefei, China
| | | | - Jinyun Zhang
- School of Life Science, Anhui Agricultural University, Hefei, China
- Horticultural Institute, Anhui Academy of Agricultural Sciences, Hefei, Anhui, China
| | - Hai Zhao
- School of Life Science, Anhui Agricultural University, Hefei, China
| | - Qing Jin
- School of Life Science, Anhui Agricultural University, Hefei, China
| | - Yongping Cai
- School of Life Science, Anhui Agricultural University, Hefei, China
- * E-mail: (YC); (YL)
| | - Yi Lin
- School of Life Science, Anhui Agricultural University, Hefei, China
- * E-mail: (YC); (YL)
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Cheng X, Muhammad A, Li G, Zhang J, Cheng J, Qiu J, Jiang T, Jin Q, Cai Y, Lin Y. Family-1 UDP glycosyltransferases in pear (Pyrus bretschneideri): Molecular identification, phylogenomic characterization and expression profiling during stone cell formation. Mol Biol Rep 2019; 46:2153-2175. [PMID: 30734172 DOI: 10.1007/s11033-019-04669-y] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/31/2018] [Accepted: 01/31/2019] [Indexed: 02/07/2023]
Abstract
Stone cells are a characteristic trait of pear fruits, and excessive stone cell formation has a significant negative impact on the texture and flavour of the pulp. Lignin is one of the main components of stone cells. Family-1 uridine diphosphate-glycosyltransferases (UGTs) are responsible for the glycosylation modification of monolignols. However, information remains limited regarding the relationship between UGTs and stone cell formation. To address this problem, we identified 139 UGTs from the pear genome, which were distributed in 15 phylogenetic groups (A-M, O, and P). We also performed a collinearity analysis of UGTs among four Rosaceae plants (pear, peach, mei, and strawberry). Phylogenetic analysis suggested that 13 PbUGTs might be related to the glycosylation of monolignols. Analysis of expression patterns demonstrated that most putative monolignol glycosylation-related PbUGTs not only showed high expression levels in flowers and buds but were also induced by exogenous ABA, SA, and MeJA. In addition, the transcript level of Pbr005014.1 (named PbUGT72AJ2) was consistent with the changing trend of lignin content in pear fruit, and the transcript level was also higher in 'Dangshan Su' pear with higher lignin and stone cell contents. Subcellular localization results showed that PbUGT72AJ2 was located mainly in the cytomembrane and cytoplasm. Based on our study, PbUGT72AJ2 is considered to be a monolignol glycosylation-related UGT. Our results provide an important source for the identification of UGTs and a foundation for the future understanding and manipulation of lignin metabolism and stone cell formation in pear fruit.
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Affiliation(s)
- Xi Cheng
- School of Life Science, Anhui Agricultural University, No. 130, Changjiang West Road, Hefei, 230036, China
| | - Abdullah Muhammad
- School of Life Science, Anhui Agricultural University, No. 130, Changjiang West Road, Hefei, 230036, China
| | - Guohui Li
- School of Life Science, Anhui Agricultural University, No. 130, Changjiang West Road, Hefei, 230036, China
| | - Jingyun Zhang
- School of Life Science, Anhui Agricultural University, No. 130, Changjiang West Road, Hefei, 230036, China
- Horticultural Institute, Anhui Academy of Agricultural Sciences, Hefei, 230031, Anhui, China
| | - Jun Cheng
- School of Life Science, Anhui Agricultural University, No. 130, Changjiang West Road, Hefei, 230036, China
| | - Jingxiang Qiu
- School of Life Science, Anhui Agricultural University, No. 130, Changjiang West Road, Hefei, 230036, China
| | - Taoshan Jiang
- School of Life Science, Anhui Agricultural University, No. 130, Changjiang West Road, Hefei, 230036, China
| | - Qing Jin
- School of Life Science, Anhui Agricultural University, No. 130, Changjiang West Road, Hefei, 230036, China
| | - Yongping Cai
- School of Life Science, Anhui Agricultural University, No. 130, Changjiang West Road, Hefei, 230036, China.
| | - Yi Lin
- School of Life Science, Anhui Agricultural University, No. 130, Changjiang West Road, Hefei, 230036, China.
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40
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Cheng X, Li G, Muhammad A, Zhang J, Jiang T, Jin Q, Zhao H, Cai Y, Lin Y. Molecular identification, phylogenomic characterization and expression patterns analysis of the LIM (LIN-11, Isl1 and MEC-3 domains) gene family in pear (Pyrus bretschneideri) reveal its potential role in lignin metabolism. Gene 2018; 686:237-249. [PMID: 30468911 DOI: 10.1016/j.gene.2018.11.064] [Citation(s) in RCA: 20] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/27/2018] [Revised: 11/10/2018] [Accepted: 11/19/2018] [Indexed: 01/15/2023]
Abstract
Lignin is the main component of stone cells, which are a key factor in determining pear quality. Therefore, modification of lignin biosynthesis has important implications for regulating stone cell formation. LIMs are involved in plant development, stress response and metabolism. However, there is still a lack of knowledge about the pear LIM family and lignin-related LIMs. To address this problem, we identified 14 LIMs from the pear genome and named them. Phylogenomic and feature domain analysis showed that they were divided into CRP- and DA&DAR-LIM groups and five subclades. LIMs from the genomes of four rosids (Prunus mummer, Prunus persica, Fragaria vesca and Vitis vinifera) were also identified, and microsynteny analysis revealed the most orthologous gene pairs in the cross of pear/grape and pear/mei. The transcript levels of PbLIMs were significantly affected by SA, ABA and MeJA. Spatio-temporal expression analysis showed that PbLIMs of the δLIM2 subfamily were highly expressed in the flowers. Changes in the expression levels of PbWLIM1a and PbWLIM1b during fruit development was consistent with the changes in lignin content. Combining phylogenetic analyses, protein three-dimensional structure determination and sequence alignment analyses, these two genes were suggested as lignin-related PbLIMs. Subcellular localization results showed that PbWLIM1a and PbWLIM1b were located mainly in the chloroplast. This study lays the foundation for revealing the mechanism of LIM-mediated lignin metabolism to regulate stone cell formation.
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Affiliation(s)
- Xi Cheng
- School of Life Science, Anhui Agricultural University, No. 130, Changjiang West Road, Hefei 230036, China
| | - Guohui Li
- School of Life Science, Anhui Agricultural University, No. 130, Changjiang West Road, Hefei 230036, China
| | - Abdullah Muhammad
- School of Life Science, Anhui Agricultural University, No. 130, Changjiang West Road, Hefei 230036, China
| | - Jingyun Zhang
- School of Life Science, Anhui Agricultural University, No. 130, Changjiang West Road, Hefei 230036, China; Horticultural Institute, Anhui Academy of Agricultural Sciences, Hefei, Anhui 230031, China
| | - Taoshan Jiang
- School of Life Science, Anhui Agricultural University, No. 130, Changjiang West Road, Hefei 230036, China
| | - Qing Jin
- School of Life Science, Anhui Agricultural University, No. 130, Changjiang West Road, Hefei 230036, China
| | - Hai Zhao
- School of Life Science, Anhui Agricultural University, No. 130, Changjiang West Road, Hefei 230036, China
| | - Yongping Cai
- School of Life Science, Anhui Agricultural University, No. 130, Changjiang West Road, Hefei 230036, China.
| | - Yi Lin
- School of Life Science, Anhui Agricultural University, No. 130, Changjiang West Road, Hefei 230036, China.
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41
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Lin Y, Lin Y, Lin H, Lin M, Li H, Yuan F, Chen Y, Xiao J. Effects of paper containing 1-MCP postharvest treatment on the disassembly of cell wall polysaccharides and softening in Younai plum fruit during storage. Food Chem 2018; 264:1-8. [PMID: 29853352 DOI: 10.1016/j.foodchem.2018.05.031] [Citation(s) in RCA: 39] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/02/2017] [Revised: 04/27/2018] [Accepted: 05/05/2018] [Indexed: 02/08/2023]
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42
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Cheng X, Su X, Muhammad A, Li M, Zhang J, Sun Y, Li G, Jin Q, Cai Y, Lin Y. Molecular Characterization, Evolution, and Expression Profiling of the Dirigent ( DIR) Family Genes in Chinese White Pear ( Pyrus bretschneideri). Front Genet 2018; 9:136. [PMID: 29713336 PMCID: PMC5911567 DOI: 10.3389/fgene.2018.00136] [Citation(s) in RCA: 30] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/06/2017] [Accepted: 04/03/2018] [Indexed: 01/24/2023] Open
Abstract
Stone cells content and size are the key factors determining the internal quality of the pear fruit. Synthesis of lignin and thickening of secondary cell wall are the keys to the development of stone cells. The polymerization of monolignols and secondary cell wall formation requires the participation of dirigent proteins (DIRs). In recent years, DIR family have been studied in higher plants, but lack of comprehensive study in the pear DIR (PbDIR) family. This study focuses on the identification and analysis of PbDIR family for the first time. We identified 35 PbDIRs from the pear genome, 89% of which are intronless genes. Phylogenetic tree and chromosome localization analysis showed that 35 PbDIRs were divided into four subfamilies (DIR-a, -b/d, -e, and -g) and irregularly distributed among 10 chromosomes. In addition, we identified 29, 26, and 14 DIRs from the other three Rosids (peach, Mei, and grape), respectively. Interspecies microsynteny analysis revealed the collinear gene pairs between pear and peach are the most. Temporal expression analysis showed that the expression changes of seven PbDIRs (DIR-a subfamily: PbDIR4 and PbDIR5; DIR-b/d subfamily: PbDIR11; DIR-g subfamily: PbDIR19; DIR-e subfamily: PbDIR23, 25 and 26) in fruits were consistent with the changes of fruit lignin and stone cells contents. In addition, the subfamily of PbDIRs in fruits showed significant responses after treatment with ABA, SA, and MeJA. According to the protein tertiary structure, key amino acid residues and expression patterns analysis found that PbDIR4 might be involved in the metabolism of lignin and related to stone cells contents in pear fruits. In this study, we systematically analyzed the structure, evolution, function and expression of PbDIR family, which not only confirmed the characteristics of PbDIR family, but also laid the foundation for revealing the role of DIR in pear stone cell development and lignin polymerization.
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Affiliation(s)
- Xi Cheng
- School of Life Science, Anhui Agricultural University, Hefei, China
| | - Xueqiang Su
- School of Life Science, Anhui Agricultural University, Hefei, China
| | | | - Manli Li
- School of Life Science, Anhui Agricultural University, Hefei, China
| | - Jinyun Zhang
- School of Life Science, Anhui Agricultural University, Hefei, China.,Institute of Horticultural, Anhui Academy of Agricultural Sciences, Hefei, China
| | - Yanming Sun
- School of Life Science, Anhui Agricultural University, Hefei, China
| | - Guohui Li
- School of Life Science, Anhui Agricultural University, Hefei, China
| | - Qing Jin
- School of Life Science, Anhui Agricultural University, Hefei, China
| | - Yongping Cai
- School of Life Science, Anhui Agricultural University, Hefei, China
| | - Yi Lin
- School of Life Science, Anhui Agricultural University, Hefei, China
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Zhang J, Cheng X, Jin Q, Su X, Li M, Yan C, Jiao X, Li D, Lin Y, Cai Y. Comparison of the transcriptomic analysis between two Chinese white pear (Pyrus bretschneideri Rehd.) genotypes of different stone cells contents. PLoS One 2017; 12:e0187114. [PMID: 29088238 PMCID: PMC5663431 DOI: 10.1371/journal.pone.0187114] [Citation(s) in RCA: 26] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/27/2017] [Accepted: 10/13/2017] [Indexed: 02/07/2023] Open
Abstract
Stone cell content is thought to be one of the key determinants for fruit quality in pears. However, the molecular mechanism of stone cell development remains poorly understood. In this study, we found that the stone cell clusters (SCCs) distribution and area in ‘Dangshan Su’ (with abundant stone cells) were higher as compared to ‘Lianglizaosu’ (low stone cell content bud sport of ‘Dangshan Su’) based on the histochemical staining, and the correlations of lignin content with stone cell content and SCC area was significant. The fruits of ‘Dangshan Su’ and ‘Lianglizaosu’ at three different developmental stages (23 and 55 days after flowering and mature) were sampled for comparative transcriptome analysis to explore the metabolic pathways associated with stone cell development. A total of 42444 unigenes were obtained from two varieties, among which 7203 differentially expressed genes (DEGs) were identified by comparison of the six transcriptomes. Specifically, many DEGs associated with lignin biosynthesis were identified, including coumaroylquinate 3-monooxygenase (C3H), shikimate O-hydroxycinnamoyltransferase (HCT), ferulate 5-hydroxylase (F5H), cinnamyl alcohol dehydrogenase (CAD) and peroxidase (POD), as well as genes related to carbon metabolism, such as sorbitol dehydrogenase-like (SDH-like) and ATP-dependent 6-phosphofructokinase (ATP-PFK). At the peak of the stone cell content (55 days after flowering), the expression level of these genes in ‘Dangshan Su’ was significantly increased compared with ‘Lianglizaosu’, indicating that these genes were closely related to stone cell development. We validated the transcriptional levels of 33 DEGs using quantitative real-time polymerase chain reaction (qRT-PCR) analysis. The results were consistent with the transcriptome analysis, indicating the reliability of transcriptome data. In addition, subcellular localization analysis of three DEGs in lignin synthesis (PbC3H, PbF5H and PbPOD) revealed that these proteins are mainly distributed in the cell membrane and cytoplasm. These results provide new insights into the molecular mechanism of stone cell formation.
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Affiliation(s)
- Jinyun Zhang
- School of Life Science, Anhui Agricultural University, Hefei, China
- Horticultural Institute, Anhui Academy of Agricultural Sciences, Hefei, Anhui, China
| | - Xi Cheng
- School of Life Science, Anhui Agricultural University, Hefei, China
| | - Qing Jin
- School of Life Science, Anhui Agricultural University, Hefei, China
| | - Xueqiang Su
- School of Life Science, Anhui Agricultural University, Hefei, China
| | - Manli Li
- School of Life Science, Anhui Agricultural University, Hefei, China
| | - Chongchong Yan
- Horticultural Institute, Anhui Academy of Agricultural Sciences, Hefei, Anhui, China
| | - Xiaoyu Jiao
- School of Life Science, Anhui Agricultural University, Hefei, China
| | - Daihui Li
- School of Life Science, Anhui Agricultural University, Hefei, China
| | - Yi Lin
- School of Life Science, Anhui Agricultural University, Hefei, China
| | - Yongping Cai
- School of Life Science, Anhui Agricultural University, Hefei, China
- * E-mail:
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