1
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Cao K, Cui Y, Sun F, Zhang H, Fan J, Ge B, Cao Y, Wang X, Zhu X, Wei Z, Yao Q, Ma J, Wang Y, Meng C, Gao Z. Metabolic engineering and synthetic biology strategies for producing high-value natural pigments in Microalgae. Biotechnol Adv 2023; 68:108236. [PMID: 37586543 DOI: 10.1016/j.biotechadv.2023.108236] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/16/2023] [Revised: 07/16/2023] [Accepted: 08/11/2023] [Indexed: 08/18/2023]
Abstract
Microalgae are microorganisms capable of producing bioactive compounds using photosynthesis. Microalgae contain a variety of high value-added natural pigments such as carotenoids, phycobilins, and chlorophylls. These pigments play an important role in many areas such as food, pharmaceuticals, and cosmetics. Natural pigments have a health value that is unmatched by synthetic pigments. However, the current commercial production of natural pigments from microalgae is not able to meet the growing market demand. The use of metabolic engineering and synthetic biological strategies to improve the production performance of microalgal cell factories is essential to promote the large-scale production of high-value pigments from microalgae. This paper reviews the health and economic values, the applications, and the synthesis pathways of microalgal pigments. Overall, this review aims to highlight the latest research progress in metabolic engineering and synthetic biology in constructing engineered strains of microalgae with high-value pigments and the application of CRISPR technology and multi-omics in this context. Finally, we conclude with a discussion on the bottlenecks and challenges of microalgal pigment production and their future development prospects.
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Affiliation(s)
- Kai Cao
- School of Pharmacy, Binzhou Medical University, Yantai 264003, China; School of Life Sciences and medicine, Shandong University of Technology, Zibo 255049, China
| | - Yulin Cui
- School of Pharmacy, Binzhou Medical University, Yantai 264003, China
| | - Fengjie Sun
- Department of Biological Sciences, School of Science and Technology, Georgia Gwinnett College, Lawrenceville, GA 30043, USA
| | - Hao Zhang
- School of Pharmacy, Binzhou Medical University, Yantai 264003, China
| | - Jianhua Fan
- State Key Laboratory of Bioreactor Engineering, East China University of Science and Technology, Shanghai 200237, China
| | - Baosheng Ge
- State Key Laboratory of Heavy Oil Processing and Center for Bioengineering and Biotechnology, China University of Petroleum (East China), Qingdao 266580, China
| | - Yujiao Cao
- School of Foreign Languages, Shandong University of Technology, Zibo 255090, China
| | - Xiaodong Wang
- School of Pharmacy, Binzhou Medical University, Yantai 264003, China
| | - Xiangyu Zhu
- School of Pharmacy, Binzhou Medical University, Yantai 264003, China; School of Life Sciences and medicine, Shandong University of Technology, Zibo 255049, China
| | - Zuoxi Wei
- School of Life Sciences and medicine, Shandong University of Technology, Zibo 255049, China
| | - Qingshou Yao
- School of Pharmacy, Binzhou Medical University, Yantai 264003, China
| | - Jinju Ma
- School of Pharmacy, Binzhou Medical University, Yantai 264003, China
| | - Yu Wang
- School of Pharmacy, Binzhou Medical University, Yantai 264003, China
| | - Chunxiao Meng
- School of Pharmacy, Binzhou Medical University, Yantai 264003, China.
| | - Zhengquan Gao
- School of Pharmacy, Binzhou Medical University, Yantai 264003, China.
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Micro- and Macro-Algae Combination as a Novel Alternative Ruminant Feed with Methane-Mitigation Potential. Animals (Basel) 2023; 13:ani13050796. [PMID: 36899652 PMCID: PMC10000192 DOI: 10.3390/ani13050796] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/16/2023] [Revised: 02/12/2023] [Accepted: 02/21/2023] [Indexed: 02/25/2023] Open
Abstract
This study was conducted to provide alternative high-quality feed and to reduce methane production using a mixture of the minimum effective levels of Euglena gracilis, EG, and Asparagopsis taxiformis, AT. This study was performed as a 24 h in vitro batch culture. Chemical analysis demonstrated that EG is a highly nutritive material with 26.1% protein and 17.7% fat. The results showed that the supplementation of AT as a feed additive at 1 and 2.5% of the diet reduced methane production by 21 and 80%, respectively, while the inclusion of EG in the diet at 10 and 25% through partially replacing the concentrate mixture reduced methane production by 4 and 11%, respectively, with no adverse effects on fermentation parameters. The mixtures of AT 1% with both EG 10% and EG 25% had a greater reductive potential than the individual supplementation of these algae in decreasing methane yield by 29.9% and 40.0%, respectively, without adverse impacts on ruminal fermentation characteristics. These results revealed that the new feed formulation had a synergistic effect in reducing methane emissions. Thus, this approach could provide a new strategy for a sustainable animal production industry.
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Khandelwal A, Chhabra M, Lens PNL. Integration of third generation biofuels with bio-electrochemical systems: Current status and future perspective. FRONTIERS IN PLANT SCIENCE 2023; 14:1081108. [PMID: 36844066 PMCID: PMC9950272 DOI: 10.3389/fpls.2023.1081108] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/26/2022] [Accepted: 01/20/2023] [Indexed: 06/18/2023]
Abstract
Biofuels hold particular promise as these can replace fossil fuels. Algae, in particular, are envisioned as a sustainable source of third-generation biofuels. Algae also produce several low volume high-value products, which enhance their prospects of use in a biorefinery. Bio-electrochemical systems such as microbial fuel cell (MFC) can be used for algae cultivation and bioelectricity production. MFCs find applications in wastewater treatment, CO2 sequestration, heavy metal removal and bio-remediation. Oxidation of electron donor by microbial catalysts in the anodic chamber gives electrons (reducing the anode), CO2, and electrical energy. The electron acceptor at the cathode can be oxygen/NO3 -/NO2 -/metal ions. However, the need for a continuous supply of terminal electron acceptor in the cathode can be eliminated by growing algae in the cathodic chamber, as they produce enough oxygen through photosynthesis. On the other hand, conventional algae cultivation systems require periodic oxygen quenching, which involves further energy consumption and adds cost to the process. Therefore, the integration of algae cultivation and MFC technology can eliminate the need of oxygen quenching and external aeration in the MFC system and thus make the overall process sustainable and a net energy producer. In addition to this, the CO2 gas produced in the anodic chamber can promote the algal growth in the cathodic chamber. Hence, the energy and cost invested for CO2 transportation in an open pond system can be saved. In this context, the present review outlines the bottlenecks of first- and second-generation biofuels along with the conventional algae cultivation systems such as open ponds and photobioreactors. Furthermore, it discusses about the process sustainability and efficiency of integrating algae cultivation with MFC technology in detail.
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Affiliation(s)
- Amitap Khandelwal
- Ryan Institute, School of Natural Sciences, University of Galway, Galway, Ireland
| | - Meenu Chhabra
- Environmental Biotechnology Lab, Department of Biosciences & Bioengineering, Indian Institute of Technology, Jodhpur, India
| | - Piet N. L. Lens
- Ryan Institute, School of Natural Sciences, University of Galway, Galway, Ireland
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4
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Li S, Li X, Ho SH. How to enhance carbon capture by evolution of microalgal photosynthesis? Sep Purif Technol 2022. [DOI: 10.1016/j.seppur.2022.120951] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/15/2023]
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5
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Machado M, Vaz MGMV, Bromke MA, Rosa RM, Covell L, Souza LPD, Rocha DI, Martins MA, Araújo WL, Szymański J, Nunes-Nesi A. Metabolic stability of freshwater Nitzschia palea strains under silicon stress associated with triacylglycerol accumulation. ALGAL RES 2021. [DOI: 10.1016/j.algal.2021.102554] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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Chen J, Yang J, Du H, Aslam M, Wang W, Chen W, Li T, Liu Z, Liu X. Laminarin, a Major Polysaccharide in Stramenopiles. Mar Drugs 2021; 19:576. [PMID: 34677475 PMCID: PMC8541152 DOI: 10.3390/md19100576] [Citation(s) in RCA: 17] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/19/2021] [Revised: 10/11/2021] [Accepted: 10/11/2021] [Indexed: 01/09/2023] Open
Abstract
During the processes of primary and secondary endosymbiosis, different microalgae evolved to synthesis different storage polysaccharides. In stramenopiles, the main storage polysaccharides are β-1,3-glucan, or laminarin, in vacuoles. Currently, laminarin is gaining considerable attention due to its application in the food, cosmetic and pharmaceuticals industries, and also its importance in global biogeochemical cycles (especially in the ocean carbon cycle). In this review, the structures, composition, contents, and bioactivity of laminarin were summarized in different algae. It was shown that the general features of laminarin are species-dependence. Furthermore, the proposed biosynthesis and catabolism pathways of laminarin, functions of key genes, and diel regulation of laminarin were also depicted and comprehensively discussed for the first time. However, the complete pathways, functions of genes, and diel regulatory mechanisms of laminarin require more biomolecular studies. This review provides more useful information and identifies the knowledge gap regarding the future studies of laminarin and its applications.
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Affiliation(s)
- Jichen Chen
- Guangdong Provincial Key Laboratory of Marine Biotechnology, STU-UNIVPM Joint Algal Research Center, Institute of Marine Sciences, Shantou University, Shantou 515063, China; (J.C.); (H.D.); (M.A.); (W.W.); (W.C.); (T.L.)
- Southern Marine Science and Engineering Guangdong Laboratory, Guangzhou 510000, China
| | - Jianchao Yang
- Yantai Academy of Agricultural Sciences, Yantai 265500, China;
| | - Hong Du
- Guangdong Provincial Key Laboratory of Marine Biotechnology, STU-UNIVPM Joint Algal Research Center, Institute of Marine Sciences, Shantou University, Shantou 515063, China; (J.C.); (H.D.); (M.A.); (W.W.); (W.C.); (T.L.)
- Southern Marine Science and Engineering Guangdong Laboratory, Guangzhou 510000, China
| | - Muhmmad Aslam
- Guangdong Provincial Key Laboratory of Marine Biotechnology, STU-UNIVPM Joint Algal Research Center, Institute of Marine Sciences, Shantou University, Shantou 515063, China; (J.C.); (H.D.); (M.A.); (W.W.); (W.C.); (T.L.)
- Southern Marine Science and Engineering Guangdong Laboratory, Guangzhou 510000, China
| | - Wanna Wang
- Guangdong Provincial Key Laboratory of Marine Biotechnology, STU-UNIVPM Joint Algal Research Center, Institute of Marine Sciences, Shantou University, Shantou 515063, China; (J.C.); (H.D.); (M.A.); (W.W.); (W.C.); (T.L.)
- Southern Marine Science and Engineering Guangdong Laboratory, Guangzhou 510000, China
| | - Weizhou Chen
- Guangdong Provincial Key Laboratory of Marine Biotechnology, STU-UNIVPM Joint Algal Research Center, Institute of Marine Sciences, Shantou University, Shantou 515063, China; (J.C.); (H.D.); (M.A.); (W.W.); (W.C.); (T.L.)
- Southern Marine Science and Engineering Guangdong Laboratory, Guangzhou 510000, China
| | - Tangcheng Li
- Guangdong Provincial Key Laboratory of Marine Biotechnology, STU-UNIVPM Joint Algal Research Center, Institute of Marine Sciences, Shantou University, Shantou 515063, China; (J.C.); (H.D.); (M.A.); (W.W.); (W.C.); (T.L.)
- Southern Marine Science and Engineering Guangdong Laboratory, Guangzhou 510000, China
| | - Zhengyi Liu
- Yantai Institute of Coastal Zone Research, Chinese Academy of Sciences, Yantai 264003, China;
| | - Xiaojuan Liu
- Guangdong Provincial Key Laboratory of Marine Biotechnology, STU-UNIVPM Joint Algal Research Center, Institute of Marine Sciences, Shantou University, Shantou 515063, China; (J.C.); (H.D.); (M.A.); (W.W.); (W.C.); (T.L.)
- Southern Marine Science and Engineering Guangdong Laboratory, Guangzhou 510000, China
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7
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Fernandes T, Ferreira A, Cordeiro N. Comparative lipidomic analysis of Chlorella stigmatophora and Hemiselmis cf. andersenii in response to nitrogen-induced changes. ALGAL RES 2021. [DOI: 10.1016/j.algal.2021.102417] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
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8
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Insights into Alexandrium minutum Nutrient Acquisition, Metabolism and Saxitoxin Biosynthesis through Comprehensive Transcriptome Survey. BIOLOGY 2021; 10:biology10090826. [PMID: 34571703 PMCID: PMC8465370 DOI: 10.3390/biology10090826] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/13/2021] [Revised: 08/12/2021] [Accepted: 08/13/2021] [Indexed: 11/17/2022]
Abstract
Simple Summary Alexandrium minutum is one of the causing organisms for the occurrence of harmful algae bloom (HABs) in marine ecosystems. This species produces saxitoxin, one of the deadliest neurotoxins which can cause human mortality. However, molecular information such as genes and proteins catalog on this species is still lacking. Therefore, this study has successfully characterized several new molecular mechanisms regarding A. minutum environmental adaptation and saxitoxin biosynthesis. Ultimately, this study provides a valuable resource for facilitating future dinoflagellates’ molecular response to environmental changes. Abstract The toxin-producing dinoflagellate Alexandrium minutum is responsible for the outbreaks of harmful algae bloom (HABs). It is a widely distributed species and is responsible for producing paralytic shellfish poisoning toxins. However, the information associated with the environmental adaptation pathway and toxin biosynthesis in this species is still lacking. Therefore, this study focuses on the functional characterization of A. minutum unigenes obtained from transcriptome sequencing using the Illumina Hiseq 4000 sequencing platform. A total of 58,802 (47.05%) unigenes were successfully annotated using public databases such as NCBI-Nr, UniprotKB, EggNOG, KEGG, InterPRO and Gene Ontology (GO). This study has successfully identified key features that enable A. minutum to adapt to the marine environment, including several carbon metabolic pathways, assimilation of various sources of nitrogen and phosphorus. A. minutum was found to encode homologues for several proteins involved in saxitoxin biosynthesis, including the first three proteins in the pathway of saxitoxin biosynthesis, namely sxtA, sxtG and sxtB. The comprehensive transcriptome analysis presented in this study represents a valuable resource for understanding the dinoflagellates molecular metabolic model regarding nutrient acquisition and biosynthesis of saxitoxin.
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Kareya MS, Mariam I, Shaikh KM, Nesamma AA, Jutur PP. Photosynthetic Carbon Partitioning and Metabolic Regulation in Response to Very-Low and High CO 2 in Microchloropsis gaditana NIES 2587. FRONTIERS IN PLANT SCIENCE 2020; 11:981. [PMID: 32719702 PMCID: PMC7348049 DOI: 10.3389/fpls.2020.00981] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/25/2019] [Accepted: 06/16/2020] [Indexed: 05/06/2023]
Abstract
Photosynthetic organisms fix inorganic carbon through carbon capture machinery (CCM) that regulates the assimilation and accumulation of carbon around ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco). However, few constraints that govern the central carbon metabolism are regulated by the carbon capture and partitioning machinery. In order to divert the cellular metabolism toward lipids and/or biorenewables it is important to investigate and understand the molecular mechanisms of the CO2-driven carbon partitioning. In this context, strategies for enhancement of CO2 fixation which will increase the overall biomass and lipid yields, can provide clues on understanding the carbon assimilation pathway, and may lead to new targets for genetic engineering in microalgae. In the present study, we have focused on the physiological and metabolomic response occurring within marine oleaginous microalgae Microchloropsis gaditana NIES 2587, under the influence of very-low CO2 (VLC; 300 ppm, or 0.03%) and high CO2 (HC; 30,000 ppm, or 3% v/v). Our results demonstrate that HC supplementation in M. gaditana channelizes the carbon flux toward the production of long chain polyunsaturated fatty acids (LC-PUFAs) and also increases the overall biomass productivities (up to 2.0 fold). Also, the qualitative metabolomics has identified nearly 31 essential metabolites, among which there is a significant fold change observed in accumulation of sugars and alcohols such as galactose and phytol in VLC as compared to HC. In conclusion, our focus is to understand the entire carbon partitioning and metabolic regulation within these photosynthetic cell factories, which will be further evaluated through multiomics approach for enhanced productivities of biomass, biofuels, and bioproducts (B3).
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Affiliation(s)
| | | | | | | | - Pannaga Pavan Jutur
- Omics of Algae Group, Industrial Biotechnology, International Centre for Genetic Engineering and Biotechnology, New Delhi, India
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10
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Fabris M, Abbriano RM, Pernice M, Sutherland DL, Commault AS, Hall CC, Labeeuw L, McCauley JI, Kuzhiuparambil U, Ray P, Kahlke T, Ralph PJ. Emerging Technologies in Algal Biotechnology: Toward the Establishment of a Sustainable, Algae-Based Bioeconomy. FRONTIERS IN PLANT SCIENCE 2020; 11:279. [PMID: 32256509 PMCID: PMC7090149 DOI: 10.3389/fpls.2020.00279] [Citation(s) in RCA: 102] [Impact Index Per Article: 25.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/29/2019] [Accepted: 02/24/2020] [Indexed: 05/18/2023]
Abstract
Mankind has recognized the value of land plants as renewable sources of food, medicine, and materials for millennia. Throughout human history, agricultural methods were continuously modified and improved to meet the changing needs of civilization. Today, our rapidly growing population requires further innovation to address the practical limitations and serious environmental concerns associated with current industrial and agricultural practices. Microalgae are a diverse group of unicellular photosynthetic organisms that are emerging as next-generation resources with the potential to address urgent industrial and agricultural demands. The extensive biological diversity of algae can be leveraged to produce a wealth of valuable bioproducts, either naturally or via genetic manipulation. Microalgae additionally possess a set of intrinsic advantages, such as low production costs, no requirement for arable land, and the capacity to grow rapidly in both large-scale outdoor systems and scalable, fully contained photobioreactors. Here, we review technical advancements, novel fields of application, and products in the field of algal biotechnology to illustrate how algae could present high-tech, low-cost, and environmentally friendly solutions to many current and future needs of our society. We discuss how emerging technologies such as synthetic biology, high-throughput phenomics, and the application of internet of things (IoT) automation to algal manufacturing technology can advance the understanding of algal biology and, ultimately, drive the establishment of an algal-based bioeconomy.
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Affiliation(s)
- Michele Fabris
- Climate Change Cluster (C3), University of Technology Sydney, Ultimo, NSW, Australia
- CSIRO Synthetic Biology Future Science Platform, Brisbane, QLD, Australia
| | - Raffaela M. Abbriano
- Climate Change Cluster (C3), University of Technology Sydney, Ultimo, NSW, Australia
| | - Mathieu Pernice
- Climate Change Cluster (C3), University of Technology Sydney, Ultimo, NSW, Australia
| | - Donna L. Sutherland
- Climate Change Cluster (C3), University of Technology Sydney, Ultimo, NSW, Australia
| | - Audrey S. Commault
- Climate Change Cluster (C3), University of Technology Sydney, Ultimo, NSW, Australia
| | - Christopher C. Hall
- Climate Change Cluster (C3), University of Technology Sydney, Ultimo, NSW, Australia
| | - Leen Labeeuw
- Climate Change Cluster (C3), University of Technology Sydney, Ultimo, NSW, Australia
| | - Janice I. McCauley
- Climate Change Cluster (C3), University of Technology Sydney, Ultimo, NSW, Australia
| | | | - Parijat Ray
- Climate Change Cluster (C3), University of Technology Sydney, Ultimo, NSW, Australia
| | - Tim Kahlke
- Climate Change Cluster (C3), University of Technology Sydney, Ultimo, NSW, Australia
| | - Peter J. Ralph
- Climate Change Cluster (C3), University of Technology Sydney, Ultimo, NSW, Australia
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11
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Jensen EL, Yangüez K, Carrière F, Gontero B. Storage Compound Accumulation in Diatoms as Response to Elevated CO 2 Concentration. BIOLOGY 2019; 9:E5. [PMID: 31878202 PMCID: PMC7169399 DOI: 10.3390/biology9010005] [Citation(s) in RCA: 16] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/29/2019] [Revised: 12/19/2019] [Accepted: 12/21/2019] [Indexed: 11/23/2022]
Abstract
Accumulation of reserve compounds (i.e., lipids and chrysolaminarin) in diatoms depends on the environmental conditions, and is often triggered by stress conditions, such as nutrient limitation. Manipulation of CO2 supply can also be used to improve both lipids and carbohydrates accumulation. Given the high diversity among diatoms, we studied the two marine model diatoms-Thalassiosira pseudonana and Phaeodactylum tricornutum, a freshwater diatom, Asterionella formosa, and Navicula pelliculosa-found in fresh- and sea-water environments. We measured the accumulation of reserve compounds and the activity of enzymes involved in carbon metabolism in these diatoms grown at high and atmospheric CO2. We observed that biomass and lipid accumulation in cells grown at high CO2 differ among the diatoms. Lipid accumulation increased only in P. tricornutum and N. pelliculosa grown in seawater in response to elevated CO2. Moreover, accumulation of lipids was also accompanied by an increased activity of the enzymes tested. However, lipid accumulation and enzyme activity decreased in N. pelliculosa cultured in fresh water. Chrysolaminarin accumulation was also affected by CO2 concentration; however, there was no clear relation with lipids accumulation. Our results are relevant to understand better the ecological role of the environment in the diatom adaptation to CO2 and the mechanisms underpinning the production of storage compounds considering diatom diversity.
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Affiliation(s)
| | | | | | - Brigitte Gontero
- CNRS, BIP, UMR 7281, IMM, FR3479, 31 Chemin J. Aiguier, Aix Marseille Univ., 13 402 Marseille CEDEX 20, France; (E.L.J.); (K.Y.); (F.C.)
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12
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Abstract
Microalgae are unicellular organisms that act as the crucial primary producers all over the world, typically found in marine and freshwater environments. Most of them can live photo-autotrophically, reproduce rapidly, and accumulate biomass in a short period efficiently. To adapt to the uninterrupted change of the environment, they evolve and differentiate continuously. As a result, some of them evolve special abilities such as toleration of extreme environment, generation of sophisticated structure to adapt to the environment, and avoid predators. Microalgae are believed to be promising bioreactors because of their high lipid and pigment contents. Genetic engineering technologies have given revolutions in the microalgal industry, which decoded the secrets of microalgal genes, express recombinant genes in microalgal genomes, and largely soar the accumulation of interested components in transgenic microalgae. However, owing to several obstructions, the industry of transgenic microalgae is still immature. Here, we provide an overview to emphasize the advantage and imperfection of the existing transgenic microalgal bioreactors.
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Affiliation(s)
- Zhi-Cong Liang
- College of Food Science and Engineering, South China University of Technology, Guangzhou, China
| | - Ming-Hua Liang
- College of Food Science and Engineering, South China University of Technology, Guangzhou, China
| | - Jian-Guo Jiang
- College of Food Science and Engineering, South China University of Technology, Guangzhou, China
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13
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Fernandes BS, Dias O, Costa G, Kaupert Neto AA, Resende TFC, Oliveira JVC, Riaño-Pachón DM, Zaiat M, Pradella JGC, Rocha I. Genome-wide sequencing and metabolic annotation of Pythium irregulare CBS 494.86: understanding Eicosapentaenoic acid production. BMC Biotechnol 2019; 19:41. [PMID: 31253157 PMCID: PMC6598237 DOI: 10.1186/s12896-019-0529-3] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/10/2018] [Accepted: 05/28/2019] [Indexed: 11/10/2022] Open
Abstract
BACKGROUND Pythium irregulare is an oleaginous Oomycete able to accumulate large amounts of lipids, including Eicosapentaenoic acid (EPA). EPA is an important and expensive dietary supplement with a promising and very competitive market, which is dependent on fish-oil extraction. This has prompted several research groups to study biotechnological routes to obtain specific fatty acids rather than a mixture of various lipids. Moreover, microorganisms can use low cost carbon sources for lipid production, thus reducing production costs. Previous studies have highlighted the production of EPA by P. irregulare, exploiting diverse low cost carbon sources that are produced in large amounts, such as vinasse, glycerol, and food wastewater. However, there is still a lack of knowledge about its biosynthetic pathways, because no functional annotation of any Pythium sp. exists yet. The goal of this work was to identify key genes and pathways related to EPA biosynthesis, in P. irregulare CBS 494.86, by sequencing and performing an unprecedented annotation of its genome, considering the possibility of using wastewater as a carbon source. RESULTS Genome sequencing provided 17,727 candidate genes, with 3809 of them associated with enzyme code and 945 with membrane transporter proteins. The functional annotation was compared with curated information of oleaginous organisms, understanding amino acids and fatty acids production, and consumption of carbon and nitrogen sources, present in the wastewater. The main features include the presence of genes related to the consumption of several sugars and candidate genes of unsaturated fatty acids production. CONCLUSIONS The whole metabolic genome presented, which is an unprecedented reconstruction of P. irregulare CBS 494.86, shows its potential to produce value-added products, in special EPA, for food and pharmaceutical industries, moreover it infers metabolic capabilities of the microorganism by incorporating information obtained from literature and genomic data, supplying information of great importance to future work.
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Affiliation(s)
- Bruna S Fernandes
- Department of Civil and Environmental Engineering, Federal University of Pernambuco, Recife, PE, Brazil.
- Centre of Biological Engineering, Universidade do Minho, Braga, Portugal.
| | - Oscar Dias
- Centre of Biological Engineering, Universidade do Minho, Braga, Portugal
| | - Gisela Costa
- Centre of Biological Engineering, Universidade do Minho, Braga, Portugal
| | - Antonio A Kaupert Neto
- Brazilian Bioethanol Science and Technology Laboratory (CTBE), Brazilian Centre of Research in Energy and Materials (CNPEM), Campinas, SP, Brazil
| | - Tiago F C Resende
- Centre of Biological Engineering, Universidade do Minho, Braga, Portugal
| | - Juliana V C Oliveira
- Brazilian Bioethanol Science and Technology Laboratory (CTBE), Brazilian Centre of Research in Energy and Materials (CNPEM), Campinas, SP, Brazil
| | - Diego M Riaño-Pachón
- Computational, Evolutionary and Systems Biology Laboratory, Center for Nuclear Energy in Agriculture, University of São Paulo, Piracicaba, São Paulo, Brazil
| | - Marcelo Zaiat
- Biological Processes Laboratory, Center for Research, Development and Innovation in Environmental Engineering, São Carlos School of Engineering (EESC), University of São Paulo, São Carlos, SP, Brazil.
| | | | - Isabel Rocha
- Centre of Biological Engineering, Universidade do Minho, Braga, Portugal.
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14
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Manipulation of trophic capacities in Haematococcus pluvialis enables low-light mediated growth on glucose and astaxanthin formation in the dark. ALGAL RES 2019. [DOI: 10.1016/j.algal.2019.101497] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/13/2023]
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15
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Xue L, He Z, Bi X, Xu W, Wei T, Wu S, Hu S. Transcriptomic profiling reveals MEP pathway contributing to ginsenoside biosynthesis in Panax ginseng. BMC Genomics 2019; 20:383. [PMID: 31101014 PMCID: PMC6524269 DOI: 10.1186/s12864-019-5718-x] [Citation(s) in RCA: 27] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/08/2018] [Accepted: 04/18/2019] [Indexed: 11/10/2022] Open
Abstract
Background Panax ginseng C. A. Mey is one of famous medicinal herb plant species. Its major bioactive compounds are various ginsenosides in roots and rhizomes. It is commonly accepted that ginsenosides are synthesized from terpene precursors, IPP and DMAPP, through the cytoplasmic mevalonate (MVA) pathway. Another plastic 2-C-methyl-D-erythritol 4-phosphate (MEP) pathway was proved also contributing to ginsenoside generation in the roots of P. ginseng by using specific chemical inhibitors recently. But their gene expression characteristics are still under reveal in P. ginseng. With the development of the high-throughput next generation sequencing (NGS) technologies, we have opportunities to discover more about the complex ginsenoside biosynthesis pathways in P. ginseng. Results We carried out deep RNA sequencing and comprehensive analyses on the ginseng root samples of 1–5 years old and five different tissues of 5 years old ginseng plants. The de novo assembly totally generated 48,165 unigenes, including 380 genes related to ginsenoside biosynthesis and all the genes encoding the enzymes of the MEP pathway and the MVA pathway. We further illustrated the gene expression profiles related to ginsenoside biosynthesis among 1–5 year-old roots and different tissues of 5 year-old ginseng plants. Particularly for the first time, we revealed that the gene transcript abundances of the MEP pathway were similar to those of the MVA pathway in ginseng roots but higher in ginseng leaves. The IspD was predicated to be the rate-limiting enzyme in the MEP pathway through both co-expression network and gene expression profile analyses. Conclusions At the transcriptional level, the MEP pathway has similar contribution to ginsenoside biosynthesis in ginseng roots, but much higher in ginseng leaves, compared with the MVA pathway. The IspD might be the key enzyme for ginsenoside generation through the MEP pathway. These results provide new information for further synthetic biology study on ginsenoside metabolic regulation. Electronic supplementary material The online version of this article (10.1186/s12864-019-5718-x) contains supplementary material, which is available to authorized users.
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Affiliation(s)
- Le Xue
- CAS Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences, NO.1 Beichen West Road, Chaoyang District, Beijing, 100101, China.,University of Chinese Academy of Sciences, No.19(A) Yuquan Road, Shijingshan District, Beijing, 100049, China
| | - Zilong He
- CAS Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences, NO.1 Beichen West Road, Chaoyang District, Beijing, 100101, China.,State Key Laboratory of Microbial Resources, Institute of Microbiology, Chinese Academy of Sciences, NO.1 Beichen West Road, Chaoyang District, Beijing, 100101, China
| | - Xiaochun Bi
- CAS Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences, NO.1 Beichen West Road, Chaoyang District, Beijing, 100101, China
| | - Wei Xu
- CAS Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences, NO.1 Beichen West Road, Chaoyang District, Beijing, 100101, China
| | - Ting Wei
- CAS Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences, NO.1 Beichen West Road, Chaoyang District, Beijing, 100101, China
| | - Shuangxiu Wu
- CAS Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences, NO.1 Beichen West Road, Chaoyang District, Beijing, 100101, China.
| | - Songnian Hu
- CAS Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences, NO.1 Beichen West Road, Chaoyang District, Beijing, 100101, China. .,University of Chinese Academy of Sciences, No.19(A) Yuquan Road, Shijingshan District, Beijing, 100049, China.
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Ho HJ, Iizuka A, Shibata E. Carbon Capture and Utilization Technology without Carbon Dioxide Purification and Pressurization: A Review on Its Necessity and Available Technologies. Ind Eng Chem Res 2019. [DOI: 10.1021/acs.iecr.9b01213] [Citation(s) in RCA: 63] [Impact Index Per Article: 12.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Affiliation(s)
- Hsing-Jung Ho
- Department of Environmental Studies for Advanced Society, Graduate School of Environmental Studies, Tohoku University, Aoba-468-1 Aramaki, Aoba-ku, Sendai, Miyagi 980-0845, Japan
| | - Atsushi Iizuka
- Center for Mineral Processing and Metallurgy, Institute of Multidisciplinary Research for Advanced Materials, Tohoku University, 2-1-1, Katahira, Aoba-ku, Sendai, Miyagi 980-8577, Japan
| | - Etsuro Shibata
- Center for Mineral Processing and Metallurgy, Institute of Multidisciplinary Research for Advanced Materials, Tohoku University, 2-1-1, Katahira, Aoba-ku, Sendai, Miyagi 980-8577, Japan
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18
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Yang YF, Li DW, Chen TT, Hao TB, Balamurugan S, Yang WD, Liu JS, Li HY. Overproduction of Bioactive Algal Chrysolaminarin by the Critical Carbon Flux Regulator Phosphoglucomutase. Biotechnol J 2018; 14:e1800220. [PMID: 30076758 DOI: 10.1002/biot.201800220] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/28/2018] [Revised: 06/22/2018] [Indexed: 01/23/2023]
Abstract
Chrysolaminarin, the primary polysaccharide reservoir in some marine algae, has attracted much attention due to its broad health properties. However, its biosynthetic pathway and regulation mechanisms have rarely been reported which hinders the improvement of production efficiency. Therefore, this study aims to identify key metabolic nodes in the chrysolaminarin biosynthetic pathway. A phosphoglucomutase (PGM) in the model microalga Phaeodactylum tricornutum, revealing its critical role in chrysolaminarin biosynthesis is identified. PGM overexpression significantly elevates chrysolaminarin content by 2.54-fold and reaches 25.6% of cell dry weight; while algal growth and photosynthesis are not impaired. Besides, PGM overexpression up- and down-regulates the expression of chrysolaminarin and lipid biosynthetic genes, respectively. Microscopic analysis of aniline blue stained cells reveals that overproduced chrysolaminarin localized predominantly in vacuoles. Lipidomic analyses reveal that PGM overexpression significantly reduces the lipid content. The findings reveal the critical role of PGM in regulating the carbon flux between carbohydrate and lipid biosynthesis in microalgae, and provide a promising candidate for high efficiency production of chrysolaminarin.
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Affiliation(s)
- Yu-Feng Yang
- Key Laboratory of Eutrophication and Red Tide Prevention of Guangdong Higher Education Institute, College of Life Science and Technology, Jinan University, Guangzhou, China
| | - Da-Wei Li
- Key Laboratory of Eutrophication and Red Tide Prevention of Guangdong Higher Education Institute, College of Life Science and Technology, Jinan University, Guangzhou, China.,Guangxi Colleges and Universities Key Laboratory of Utilization of Microbial and Botanical Resources, School of Marine Sciences and Biotechnology, Guangxi University for Nationalities, Nanning, China
| | - Ting-Ting Chen
- Key Laboratory of Eutrophication and Red Tide Prevention of Guangdong Higher Education Institute, College of Life Science and Technology, Jinan University, Guangzhou, China
| | - Ting-Bin Hao
- Key Laboratory of Eutrophication and Red Tide Prevention of Guangdong Higher Education Institute, College of Life Science and Technology, Jinan University, Guangzhou, China
| | - Srinivasan Balamurugan
- Key Laboratory of Eutrophication and Red Tide Prevention of Guangdong Higher Education Institute, College of Life Science and Technology, Jinan University, Guangzhou, China
| | - Wei-Dong Yang
- Key Laboratory of Eutrophication and Red Tide Prevention of Guangdong Higher Education Institute, College of Life Science and Technology, Jinan University, Guangzhou, China
| | - Jie-Sheng Liu
- Key Laboratory of Eutrophication and Red Tide Prevention of Guangdong Higher Education Institute, College of Life Science and Technology, Jinan University, Guangzhou, China
| | - Hong-Ye Li
- Key Laboratory of Eutrophication and Red Tide Prevention of Guangdong Higher Education Institute, College of Life Science and Technology, Jinan University, Guangzhou, China
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Abbriano R, Vardar N, Yee D, Hildebrand M. Manipulation of a glycolytic regulator alters growth and carbon partitioning in the marine diatom Thalassiosira pseudonana. ALGAL RES 2018. [DOI: 10.1016/j.algal.2018.03.018] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/17/2022]
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20
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Piligaev AV, Sorokina KN, Shashkov MV, Parmon VN. Screening and comparative metabolic profiling of high lipid content microalgae strains for application in wastewater treatment. BIORESOURCE TECHNOLOGY 2018; 250:538-547. [PMID: 29197777 DOI: 10.1016/j.biortech.2017.11.063] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/03/2017] [Revised: 11/17/2017] [Accepted: 11/22/2017] [Indexed: 05/11/2023]
Abstract
New strains of green microalgae were isolated and screened for growth and the production of lipids from municipal wastewater. It was shown that the strain Micractinium sp. IC-76 has a biomass productivity of 37.18 ± 4.12 mg L-1 d-1 and a lipid content of 36.29 ± 0.11%, with a total content of saturated and monounsaturated fatty acids of 71.9%. The efficiency of nitrogen (N-NH4) and phosphorus (P-PO4) removal was 96.4 ± 0.7 and 77.8 ± 5.6%, respectively. The metabolic differences at the exponential and stationary phases of growth between the closely related strains with different patterns of lipid accumulation were revealed via gas chromatography mass spectrometry metabolic profiling. The strain Micractinium sp. IC-76 in the stationary phase of growth shows a significant difference in carbohydrate metabolism, especially sucrose concentration. High lipid induction during cultivation in wastewater was also driven by changes in the biosynthesis of amino acids, fatty acids and the tricarboxylic acid cycle.
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Affiliation(s)
- A V Piligaev
- Boreskov Institute of Catalysis, pr. Lavrentieva 5, Novosibirsk 630090, Russia
| | - K N Sorokina
- Boreskov Institute of Catalysis, pr. Lavrentieva 5, Novosibirsk 630090, Russia; Novosibirsk State University, Pirogova str. 2, Novosibirsk 630090, Russia.
| | - M V Shashkov
- Boreskov Institute of Catalysis, pr. Lavrentieva 5, Novosibirsk 630090, Russia; Novosibirsk State University, Pirogova str. 2, Novosibirsk 630090, Russia
| | - V N Parmon
- Boreskov Institute of Catalysis, pr. Lavrentieva 5, Novosibirsk 630090, Russia; Novosibirsk State University, Pirogova str. 2, Novosibirsk 630090, Russia
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Poliner E, Pulman JA, Zienkiewicz K, Childs K, Benning C, Farré EM. A toolkit for Nannochloropsis oceanica CCMP1779 enables gene stacking and genetic engineering of the eicosapentaenoic acid pathway for enhanced long-chain polyunsaturated fatty acid production. PLANT BIOTECHNOLOGY JOURNAL 2018; 16:298-309. [PMID: 28605577 PMCID: PMC5785352 DOI: 10.1111/pbi.12772] [Citation(s) in RCA: 80] [Impact Index Per Article: 13.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/14/2017] [Revised: 05/05/2017] [Accepted: 06/06/2017] [Indexed: 05/04/2023]
Abstract
Nannochloropsis oceanica is an oleaginous microalga rich in ω3 long-chain polyunsaturated fatty acids (LC-PUFAs) content, in the form of eicosapentaenoic acid (EPA). We identified the enzymes involved in LC-PUFA biosynthesis in N. oceanica CCMP1779 and generated multigene expression vectors aiming at increasing LC-PUFA content in vivo. We isolated the cDNAs encoding four fatty acid desaturases (FAD) and determined their function by heterologous expression in S. cerevisiae. To increase the expression of multiple fatty acid desaturases in N. oceanica CCMP1779, we developed a genetic engineering toolkit that includes an endogenous bidirectional promoter and optimized peptide bond skipping 2A peptides. The toolkit also includes multiple epitopes for tagged fusion protein production and two antibiotic resistance genes. We applied this toolkit, towards building a gene stacking system for N. oceanica that consists of two vector series, pNOC-OX and pNOC-stacked. These tools for genetic engineering were employed to test the effects of the overproduction of one, two or three desaturase-encoding cDNAs in N. oceanica CCMP1779 and prove the feasibility of gene stacking in this genetically tractable oleaginous microalga. All FAD overexpressing lines had considerable increases in the proportion of LC-PUFAs, with the overexpression of Δ12 and Δ5 FAD encoding sequences leading to an increase in the final ω3 product, EPA.
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Affiliation(s)
- Eric Poliner
- MSU‐DOE Plant Research LaboratoryMichigan State UniversityEast LansingMIUSA
- Cell and Molecular Biology ProgramMichigan State UniversityEast LansingMIUSA
| | - Jane A. Pulman
- Department of Plant BiologyMichigan State UniversityEast LansingMIUSA
| | - Krzysztof Zienkiewicz
- MSU‐DOE Plant Research LaboratoryMichigan State UniversityEast LansingMIUSA
- Department of Plant BiochemistryAlbrecht‐von‐Haller‐Institute for Plant SciencesGeorg‐August‐UniversityGottingenGermany
| | - Kevin Childs
- Department of Plant BiologyMichigan State UniversityEast LansingMIUSA
| | - Christoph Benning
- MSU‐DOE Plant Research LaboratoryMichigan State UniversityEast LansingMIUSA
- Department of Plant BiologyMichigan State UniversityEast LansingMIUSA
- Department of Biochemistry and Molecular BiologyMichigan State UniversityEast LansingMIUSA
| | - Eva M. Farré
- Department of Plant BiologyMichigan State UniversityEast LansingMIUSA
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22
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Rocha RP, Machado M, Vaz MGMV, Vinson CC, Leite M, Richard R, Mendes LBB, Araujo WL, Caldana C, Martins MA, Williams TC, Nunes-Nesi A. Exploring the metabolic and physiological diversity of native microalgal strains (Chlorophyta) isolated from tropical freshwater reservoirs. ALGAL RES 2017. [DOI: 10.1016/j.algal.2017.10.021] [Citation(s) in RCA: 25] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
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23
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Jaeger D, Winkler A, Mussgnug JH, Kalinowski J, Goesmann A, Kruse O. Time-resolved transcriptome analysis and lipid pathway reconstruction of the oleaginous green microalga Monoraphidium neglectum reveal a model for triacylglycerol and lipid hyperaccumulation. BIOTECHNOLOGY FOR BIOFUELS 2017; 10:197. [PMID: 28814974 PMCID: PMC5556983 DOI: 10.1186/s13068-017-0882-1] [Citation(s) in RCA: 24] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/07/2017] [Accepted: 08/03/2017] [Indexed: 05/03/2023]
Abstract
BACKGROUND Oleaginous microalgae are promising production hosts for the sustainable generation of lipid-based bioproducts and as bioenergy carriers such as biodiesel. Transcriptomics of the lipid accumulation phase, triggered efficiently by nitrogen starvation, is a valuable approach for the identification of gene targets for metabolic engineering. RESULTS An explorative analysis of the detailed transcriptional response to different stages of nitrogen availability was performed in the oleaginous green alga Monoraphidium neglectum. Transcript data were correlated with metabolic data for cellular contents of starch and of different lipid fractions. A pronounced transcriptional down-regulation of photosynthesis became apparent in response to nitrogen starvation, whereas glucose catabolism was found to be up-regulated. An in-depth reconstruction and analysis of the pathways for glycerolipid, central carbon, and starch metabolism revealed that distinct transcriptional changes were generally found only for specific steps within a metabolic pathway. In addition to pathway analyses, the transcript data were also used to refine the current genome annotation. The transcriptome data were integrated into a database and complemented with data for other microalgae which were also subjected to nitrogen starvation. It is available at https://tdbmn.cebitec.uni-bielefeld.de. CONCLUSIONS Based on the transcriptional responses to different stages of nitrogen availability, a model for triacylglycerol and lipid hyperaccumulation is proposed, which involves transcriptional induction of thioesterases, differential regulation of lipases, and a re-routing of the central carbon metabolism. Over-expression of distinct thioesterases was identified to be a potential strategy to increase the oleaginous phenotype of M. neglectum, and furthermore specific lipases were identified as potential targets for future metabolic engineering approaches.
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Affiliation(s)
- Daniel Jaeger
- Algae Biotechnology and Bioenergy, Faculty of Biology, Center for Biotechnology (CeBiTec), Bielefeld University, 33615 Bielefeld, Germany
| | - Anika Winkler
- Microbial Genomics and Biotechnology, Center for Biotechnology (CeBiTec), Bielefeld University, 33615 Bielefeld, Germany
| | - Jan H. Mussgnug
- Algae Biotechnology and Bioenergy, Faculty of Biology, Center for Biotechnology (CeBiTec), Bielefeld University, 33615 Bielefeld, Germany
| | - Jörn Kalinowski
- Microbial Genomics and Biotechnology, Center for Biotechnology (CeBiTec), Bielefeld University, 33615 Bielefeld, Germany
| | - Alexander Goesmann
- Bioinformatics and Systems Biology, Justus-Liebig-Universität, 35392 Gießen, Germany
| | - Olaf Kruse
- Algae Biotechnology and Bioenergy, Faculty of Biology, Center for Biotechnology (CeBiTec), Bielefeld University, 33615 Bielefeld, Germany
- Algae Biotechnology and Bioenergy, Faculty of Biology, Center for Biotechnology (CeBiTec), Bielefeld University, Universitaetsstrasse 27, 33615 Bielefeld, Germany
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25
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Effects of chrysolaminarin synthase knockdown in the diatom Thalassiosira pseudonana: Implications of reduced carbohydrate storage relative to green algae. ALGAL RES 2017. [DOI: 10.1016/j.algal.2017.01.010] [Citation(s) in RCA: 52] [Impact Index Per Article: 7.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
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26
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Review of the algal biology program within the National Alliance for Advanced Biofuels and Bioproducts. ALGAL RES 2017. [DOI: 10.1016/j.algal.2016.06.002] [Citation(s) in RCA: 55] [Impact Index Per Article: 7.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
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27
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Machado M, Bromke M, Domingues Júnior AP, Marçal Vieira Vaz MG, Rosa RM, Vinson CC, Sabir JS, Rocha DI, Martins MA, Araújo WL, Willmitzer L, Szymanski J, Nunes-Nesi A. Comprehensive metabolic reprograming in freshwater Nitzschia palea strains undergoing nitrogen starvation is likely associated with its ecological origin. ALGAL RES 2016. [DOI: 10.1016/j.algal.2016.06.003] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/15/2023]
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28
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Fernandes T, Fernandes I, Andrade CAP, Cordeiro N. Marine microalgae growth and carbon partitioning as a function of nutrient availability. BIORESOURCE TECHNOLOGY 2016; 214:541-547. [PMID: 27179298 DOI: 10.1016/j.biortech.2016.05.001] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/24/2016] [Revised: 04/23/2016] [Accepted: 05/03/2016] [Indexed: 06/05/2023]
Abstract
To understand in which way the structural differences of three marine microalgae (Nannochloropsis gaditana, Rhodomonas marina and Isochrysis sp.) affect their carbon partitioning, growth and applicability; a stoichiometric imbalance was imposed by steady carbon and other nutrients variation. Towards high nutrients concentrations/low carbon availability a decrease of 12-51% in C/N microalgae ratio was observed and maximum cell densities were achieved. Moreover, linear correlation between the nutrient input and microalgae protein content were observed. The macromolecular ratios pointed that carbohydrate was the main contributor for the C/N decrement. Although lipid content in R. marina remained constant throughout the experiment, a rise of 37-107% in N. gaditana and Isochrysis sp. was verified. Lipid fractions revealed high percentages of glycolipids in all microalgae (57-73% of total lipids). The present study shows an easy way to understand and modulate microalgae carbon partitioning relying on the field of application.
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Affiliation(s)
- Tomásia Fernandes
- University of Madeira, Faculty of Sciences and Engineering, 9000-390 Funchal, Madeira, Portugal
| | - Igor Fernandes
- University of Madeira, Faculty of Sciences and Engineering, 9000-390 Funchal, Madeira, Portugal
| | - Carlos A P Andrade
- Mariculture Center of Calheta, Vila da Calheta, 9370-133 Calheta, Madeira, Portugal; CIIMAR, Interdisciplinary Centre of Marine and Environmental Research, Rua dos Bragas 289, 4050-123 Porto, Portugal
| | - Nereida Cordeiro
- University of Madeira, Faculty of Sciences and Engineering, 9000-390 Funchal, Madeira, Portugal.
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Banerjee C, Dubey KK, Shukla P. Metabolic Engineering of Microalgal Based Biofuel Production: Prospects and Challenges. Front Microbiol 2016; 7:432. [PMID: 27065986 PMCID: PMC4815533 DOI: 10.3389/fmicb.2016.00432] [Citation(s) in RCA: 46] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/22/2015] [Accepted: 03/17/2016] [Indexed: 12/14/2022] Open
Abstract
The current scenario in renewable energy is focused on development of alternate and sustainable energy sources, amongst which microalgae stands as one of the promising feedstock for biofuel production. It is well known that microalgae generate much larger amounts of biofuels in a shorter time than other sources based on plant seeds. However, the greatest challenge in a transition to algae-based biofuel production is the various other complications involved in microalgal cultivation, its harvesting, concentration, drying and lipid extraction. Several green microalgae accumulate lipids, especially triacylglycerols (TAGs), which are main precursors in the production of lipid. The various aspects on metabolic pathway analysis of an oleaginous microalgae i.e., Chlamydomonas reinhardtii have elucidated some novel metabolically important genes and this enhances the lipid production in this microalgae. Adding to it, various other aspects in metabolic engineering using OptFlux and effectual bioprocess design also gives an interactive snapshot of enhancing lipid production which ultimately improvises the oil yield. This article reviews the current status of microalgal based technologies for biofuel production, bioreactor process design, flux analysis and it also provides various strategies to increase lipids accumulation via metabolic engineering.
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Affiliation(s)
- Chiranjib Banerjee
- Department of Environmental Science and Engineering, Indian School of Mines Dhanbad, India
| | - Kashyap K Dubey
- Department of Biotechnology, University Institute of Engineering and Technology, Maharshi Dayanand University Rohtak, India
| | - Pratyoosh Shukla
- Enzyme Technology and Protein Bioinformatics Laboratory, Department of Microbiology, Maharshi Dayanand University Rohtak, India
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Beld J, Abbriano R, Finzel K, Hildebrand M, Burkart MD. Probing fatty acid metabolism in bacteria, cyanobacteria, green microalgae and diatoms with natural and unnatural fatty acids. MOLECULAR BIOSYSTEMS 2016; 12:1299-312. [PMID: 26886879 DOI: 10.1039/c5mb00804b] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
Abstract
In both eukaryotes and prokaryotes, fatty acid synthases are responsible for the biosynthesis of fatty acids in an iterative process, extending the fatty acid by two carbon units every cycle. Thus, odd numbered fatty acids are rarely found in nature. We tested whether representatives of diverse microbial phyla have the ability to incorporate odd-chain fatty acids as substrates for their fatty acid synthases and their downstream enzymes. We fed various odd and short chain fatty acids to the bacterium Escherichia coli, cyanobacterium Synechocystis sp. PCC 6803, green microalga Chlamydomonas reinhardtii and diatom Thalassiosira pseudonana. Major differences were observed, specifically in the ability among species to incorporate and elongate short chain fatty acids. We demonstrate that E. coli, C. reinhardtii, and T. pseudonana can produce longer fatty acid products from short chain precursors (C3 and C5), while Synechocystis sp. PCC 6803 lacks this ability. However, Synechocystis can incorporate and elongate longer chain fatty acids due to acyl-acyl carrier protein synthetase (AasS) activity, and knockout of this protein eliminates the ability to incorporate these fatty acids. In addition, expression of a characterized AasS from Vibrio harveyii confers a similar capability to E. coli. The ability to desaturate exogenously added fatty acids was only observed in Synechocystis and C. reinhardtii. We further probed fatty acid metabolism of these organisms by feeding desaturase inhibitors to test the specificity of long-chain fatty acid desaturases. In particular, supplementation with thia fatty acids can alter fatty acid profiles based on the location of the sulfur in the chain. We show that coupling sensitive gas chromatography mass spectrometry to supplementation of unnatural fatty acids can reveal major differences between fatty acid metabolism in various organisms. Often unnatural fatty acids have antibacterial or even therapeutic properties. Feeding of short precursors now gives us easy access to these extended molecules.
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Affiliation(s)
- Joris Beld
- Department of Chemistry and Biochemistry, University of California, San Diego, 9500 Gilman Drive, La Jolla, CA 92093-0358, USA.
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Mansfeldt CB, Richter LV, Ahner BA, Cochlan WP, Richardson RE. Use of De Novo Transcriptome Libraries to Characterize a Novel Oleaginous Marine Chlorella Species during the Accumulation of Triacylglycerols. PLoS One 2016; 11:e0147527. [PMID: 26840425 PMCID: PMC4740408 DOI: 10.1371/journal.pone.0147527] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/28/2015] [Accepted: 01/05/2016] [Indexed: 11/30/2022] Open
Abstract
Marine chlorophytes of the genus Chlorella are unicellular algae capable of accumulating a high proportion of cellular lipids that can be used for biodiesel production. In this study, we examined the broad physiological capabilities of a subtropical strain (C596) of Chlorella sp. “SAG-211-18” including its heterotrophic growth and tolerance to low salt. We found that the alga replicates more slowly at diluted salt concentrations and can grow on a wide range of carbon substrates in the dark. We then sequenced the RNA of Chlorella strain C596 to elucidate key metabolic genes and investigate the transcriptomic response of the organism when transitioning from a nutrient-replete to a nutrient-deficient condition when neutral lipids accumulate. Specific transcripts encoding for enzymes involved in both starch and lipid biosynthesis, among others, were up-regulated as the cultures transitioned into a lipid-accumulating state whereas photosynthesis-related genes were down-regulated. Transcripts encoding for two of the up-regulated enzymes—a galactoglycerolipid lipase and a diacylglyceride acyltransferase—were also monitored by reverse transcription quantitative polymerase chain reaction assays. The results of these assays confirmed the transcriptome-sequencing data. The present transcriptomic study will assist in the greater understanding, more effective application, and efficient design of Chlorella-based biofuel production systems.
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Affiliation(s)
- Cresten B. Mansfeldt
- Department of Biological and Environmental Engineering, Cornell University, Ithaca, NY, United States of America
- * E-mail:
| | - Lubna V. Richter
- Department of Biological and Environmental Engineering, Cornell University, Ithaca, NY, United States of America
| | - Beth A. Ahner
- Department of Biological and Environmental Engineering, Cornell University, Ithaca, NY, United States of America
| | - William P. Cochlan
- Romberg Tiburon Center for Environmental Studies, San Francisco State University, Tiburon, CA, United States of America
| | - Ruth E. Richardson
- Department of Civil and Environmental Engineering, Cornell University, Ithaca, NY, United States of America
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Traller JC, Cokus SJ, Lopez DA, Gaidarenko O, Smith SR, McCrow JP, Gallaher SD, Podell S, Thompson M, Cook O, Morselli M, Jaroszewicz A, Allen EE, Allen AE, Merchant SS, Pellegrini M, Hildebrand M. Genome and methylome of the oleaginous diatom Cyclotella cryptica reveal genetic flexibility toward a high lipid phenotype. BIOTECHNOLOGY FOR BIOFUELS 2016; 9:258. [PMID: 27933100 PMCID: PMC5124317 DOI: 10.1186/s13068-016-0670-3] [Citation(s) in RCA: 58] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/08/2016] [Accepted: 11/15/2016] [Indexed: 05/08/2023]
Abstract
BACKGROUND Improvement in the performance of eukaryotic microalgae for biofuel and bioproduct production is largely dependent on characterization of metabolic mechanisms within the cell. The marine diatom Cyclotella cryptica, which was originally identified in the Aquatic Species Program, is a promising strain of microalgae for large-scale production of biofuel and bioproducts, such as omega-3 fatty acids. RESULTS We sequenced the nuclear genome and methylome of this oleaginous diatom to identify the genetic traits that enable substantial accumulation of triacylglycerol. The genome is comprised of highly methylated repetitive sequence, which does not significantly change under silicon starved lipid induction, and data further suggests the primary role of DNA methylation is to suppress DNA transposition. Annotation of pivotal glycolytic, lipid metabolism, and carbohydrate degradation processes reveal an expanded enzyme repertoire in C. cryptica that would allow for an increased metabolic capacity toward triacylglycerol production. Identification of previously unidentified genes, including those involved in carbon transport and chitin metabolism, provide potential targets for genetic manipulation of carbon flux to further increase its lipid phenotype. New genetic tools were developed, bringing this organism on a par with other microalgae in terms of genetic manipulation and characterization approaches. CONCLUSIONS Functional annotation and detailed cross-species comparison of key carbon rich processes in C. cryptica highlights the importance of enzymatic subcellular compartmentation for regulation of carbon flux, which is often overlooked in photosynthetic microeukaryotes. The availability of the genome sequence, as well as advanced genetic manipulation tools enable further development of this organism for deployment in large-scale production systems.
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Affiliation(s)
- Jesse C. Traller
- Scripps Institution of Oceanography, University California San Diego, 9500 Gilman Drive, La Jolla, CA 92093-0202 USA
| | - Shawn J. Cokus
- Institute for Genomics and Proteomics, University of California, Los Angeles, CA 90095 USA
| | - David A. Lopez
- Institute for Genomics and Proteomics, University of California, Los Angeles, CA 90095 USA
| | - Olga Gaidarenko
- Scripps Institution of Oceanography, University California San Diego, 9500 Gilman Drive, La Jolla, CA 92093-0202 USA
| | - Sarah R. Smith
- Scripps Institution of Oceanography, University California San Diego, 9500 Gilman Drive, La Jolla, CA 92093-0202 USA
- J. Craig Venter Institute, 4120 Capricorn Lane, La Jolla, CA 92037 USA
| | - John P. McCrow
- J. Craig Venter Institute, 4120 Capricorn Lane, La Jolla, CA 92037 USA
| | - Sean D. Gallaher
- Institute for Genomics and Proteomics, University of California, Los Angeles, CA 90095 USA
- Department of Chemistry and Biochemistry, University of California, Los Angeles, CA 90095 USA
| | - Sheila Podell
- Scripps Institution of Oceanography, University California San Diego, 9500 Gilman Drive, La Jolla, CA 92093-0202 USA
| | - Michael Thompson
- Institute for Genomics and Proteomics, University of California, Los Angeles, CA 90095 USA
| | - Orna Cook
- Scripps Institution of Oceanography, University California San Diego, 9500 Gilman Drive, La Jolla, CA 92093-0202 USA
| | - Marco Morselli
- Institute for Genomics and Proteomics, University of California, Los Angeles, CA 90095 USA
| | - Artur Jaroszewicz
- Institute for Genomics and Proteomics, University of California, Los Angeles, CA 90095 USA
| | - Eric E. Allen
- Scripps Institution of Oceanography, University California San Diego, 9500 Gilman Drive, La Jolla, CA 92093-0202 USA
| | - Andrew E. Allen
- Scripps Institution of Oceanography, University California San Diego, 9500 Gilman Drive, La Jolla, CA 92093-0202 USA
- J. Craig Venter Institute, 4120 Capricorn Lane, La Jolla, CA 92037 USA
| | - Sabeeha S. Merchant
- Department of Chemistry and Biochemistry, University of California, Los Angeles, CA 90095 USA
| | - Matteo Pellegrini
- Institute for Genomics and Proteomics, University of California, Los Angeles, CA 90095 USA
| | - Mark Hildebrand
- Scripps Institution of Oceanography, University California San Diego, 9500 Gilman Drive, La Jolla, CA 92093-0202 USA
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Gimpel JA, Henríquez V, Mayfield SP. In Metabolic Engineering of Eukaryotic Microalgae: Potential and Challenges Come with Great Diversity. Front Microbiol 2015; 6:1376. [PMID: 26696985 PMCID: PMC4678203 DOI: 10.3389/fmicb.2015.01376] [Citation(s) in RCA: 90] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/30/2015] [Accepted: 11/20/2015] [Indexed: 12/03/2022] Open
Abstract
The great phylogenetic diversity of microalgae is corresponded by a wide arrange of interesting and useful metabolites. Nonetheless metabolic engineering in microalgae has been limited, since specific transformation tools must be developed for each species for either the nuclear or chloroplast genomes. Microalgae as production platforms for metabolites offer several advantages over plants and other microorganisms, like the ability of GMO containment and reduced costs in culture media, respectively. Currently, microalgae have proved particularly well suited for the commercial production of omega-3 fatty acids and carotenoids. Therefore most metabolic engineering strategies have been developed for these metabolites. Microalgal biofuels have also drawn great attention recently, resulting in efforts for improving the production of hydrogen and photosynthates, particularly triacylglycerides. Metabolic pathways of microalgae have also been manipulated in order to improve photosynthetic growth under specific conditions and for achieving trophic conversion. Although these pathways are not strictly related to secondary metabolites, the synthetic biology approaches could potentially be translated to this field and will also be discussed.
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Affiliation(s)
- Javier A Gimpel
- Chemical and Biotechnology Engineering Department, Centre for Biotechnology and Bioengineering, Universidad de Chile Santiago, Chile
| | - Vitalia Henríquez
- Instituto de Biología, Pontificia Universidad Católica de Valparaíso Valparaiso, Chile
| | - Stephen P Mayfield
- Division of Biological Sciences, California Center for Algae Biotechnology, University of California, San Diego La Jolla, CA, USA
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Fan J, Ning K, Zeng X, Luo Y, Wang D, Hu J, Li J, Xu H, Huang J, Wan M, Wang W, Zhang D, Shen G, Run C, Liao J, Fang L, Huang S, Jing X, Su X, Wang A, Bai L, Hu Z, Xu J, Li Y. Genomic Foundation of Starch-to-Lipid Switch in Oleaginous Chlorella spp. PLANT PHYSIOLOGY 2015; 169:2444-61. [PMID: 26486592 PMCID: PMC4677908 DOI: 10.1104/pp.15.01174] [Citation(s) in RCA: 50] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/29/2015] [Accepted: 10/20/2015] [Indexed: 05/17/2023]
Abstract
The ability to rapidly switch the intracellular energy storage form from starch to lipids is an advantageous trait for microalgae feedstock. To probe this mechanism, we sequenced the 56.8-Mbp genome of Chlorella pyrenoidosa FACHB-9, an industrial production strain for protein, starch, and lipids. The genome exhibits positive selection and gene family expansion in lipid and carbohydrate metabolism and genes related to cell cycle and stress response. Moreover, 10 lipid metabolism genes might be originated from bacteria via horizontal gene transfer. Transcriptomic dynamics tracked via messenger RNA sequencing over six time points during metabolic switch from starch-rich heterotrophy to lipid-rich photoautotrophy revealed that under heterotrophy, genes most strongly expressed were from the tricarboxylic acid cycle, respiratory chain, oxidative phosphorylation, gluconeogenesis, glyoxylate cycle, and amino acid metabolisms, whereas those most down-regulated were from fatty acid and oxidative pentose phosphate metabolism. The shift from heterotrophy into photoautotrophy highlights up-regulation of genes from carbon fixation, photosynthesis, fatty acid biosynthesis, the oxidative pentose phosphate pathway, and starch catabolism, which resulted in a marked redirection of metabolism, where the primary carbon source of glycine is no longer supplied to cell building blocks by the tricarboxylic acid cycle and gluconeogenesis, whereas carbon skeletons from photosynthesis and starch degradation may be directly channeled into fatty acid and protein biosynthesis. By establishing the first genetic transformation in industrial oleaginous C. pyrenoidosa, we further showed that overexpression of an NAD(H) kinase from Arabidopsis (Arabidopsis thaliana) increased cellular lipid content by 110.4%, yet without reducing growth rate. These findings provide a foundation for exploiting the metabolic switch in microalgae for improved photosynthetic production of food and fuels.
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Affiliation(s)
- Jianhua Fan
- State Key Laboratory of Bioreactor Engineering, East China University of Science and Technology, Shanghai 200237, China (J.F., Y.Lu., H.X., J.Hua., M.W., W.W., D.Z., G.S., C.R., J.Lia., L.F., Y.Li.);Single-Cell Center, Chinese Academy of Sciences Key Laboratory of Biofuels and Shandong Key Laboratory of Energy Genetics, Qingdao Institute of BioEnergy and Bioprocess Technology, Chinese Academy of Sciences, Qingdao, Shandong 266101, China (K.N., X.Z., D.W., J.Hu., J.Li., S.H., X.J., X.S., A.W., J.X.); andInstitute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, China (L.B., Z.H.)
| | - Kang Ning
- State Key Laboratory of Bioreactor Engineering, East China University of Science and Technology, Shanghai 200237, China (J.F., Y.Lu., H.X., J.Hua., M.W., W.W., D.Z., G.S., C.R., J.Lia., L.F., Y.Li.);Single-Cell Center, Chinese Academy of Sciences Key Laboratory of Biofuels and Shandong Key Laboratory of Energy Genetics, Qingdao Institute of BioEnergy and Bioprocess Technology, Chinese Academy of Sciences, Qingdao, Shandong 266101, China (K.N., X.Z., D.W., J.Hu., J.Li., S.H., X.J., X.S., A.W., J.X.); andInstitute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, China (L.B., Z.H.)
| | - Xiaowei Zeng
- State Key Laboratory of Bioreactor Engineering, East China University of Science and Technology, Shanghai 200237, China (J.F., Y.Lu., H.X., J.Hua., M.W., W.W., D.Z., G.S., C.R., J.Lia., L.F., Y.Li.);Single-Cell Center, Chinese Academy of Sciences Key Laboratory of Biofuels and Shandong Key Laboratory of Energy Genetics, Qingdao Institute of BioEnergy and Bioprocess Technology, Chinese Academy of Sciences, Qingdao, Shandong 266101, China (K.N., X.Z., D.W., J.Hu., J.Li., S.H., X.J., X.S., A.W., J.X.); andInstitute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, China (L.B., Z.H.)
| | - Yuanchan Luo
- State Key Laboratory of Bioreactor Engineering, East China University of Science and Technology, Shanghai 200237, China (J.F., Y.Lu., H.X., J.Hua., M.W., W.W., D.Z., G.S., C.R., J.Lia., L.F., Y.Li.);Single-Cell Center, Chinese Academy of Sciences Key Laboratory of Biofuels and Shandong Key Laboratory of Energy Genetics, Qingdao Institute of BioEnergy and Bioprocess Technology, Chinese Academy of Sciences, Qingdao, Shandong 266101, China (K.N., X.Z., D.W., J.Hu., J.Li., S.H., X.J., X.S., A.W., J.X.); andInstitute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, China (L.B., Z.H.)
| | - Dongmei Wang
- State Key Laboratory of Bioreactor Engineering, East China University of Science and Technology, Shanghai 200237, China (J.F., Y.Lu., H.X., J.Hua., M.W., W.W., D.Z., G.S., C.R., J.Lia., L.F., Y.Li.);Single-Cell Center, Chinese Academy of Sciences Key Laboratory of Biofuels and Shandong Key Laboratory of Energy Genetics, Qingdao Institute of BioEnergy and Bioprocess Technology, Chinese Academy of Sciences, Qingdao, Shandong 266101, China (K.N., X.Z., D.W., J.Hu., J.Li., S.H., X.J., X.S., A.W., J.X.); andInstitute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, China (L.B., Z.H.)
| | - Jianqiang Hu
- State Key Laboratory of Bioreactor Engineering, East China University of Science and Technology, Shanghai 200237, China (J.F., Y.Lu., H.X., J.Hua., M.W., W.W., D.Z., G.S., C.R., J.Lia., L.F., Y.Li.);Single-Cell Center, Chinese Academy of Sciences Key Laboratory of Biofuels and Shandong Key Laboratory of Energy Genetics, Qingdao Institute of BioEnergy and Bioprocess Technology, Chinese Academy of Sciences, Qingdao, Shandong 266101, China (K.N., X.Z., D.W., J.Hu., J.Li., S.H., X.J., X.S., A.W., J.X.); andInstitute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, China (L.B., Z.H.)
| | - Jing Li
- State Key Laboratory of Bioreactor Engineering, East China University of Science and Technology, Shanghai 200237, China (J.F., Y.Lu., H.X., J.Hua., M.W., W.W., D.Z., G.S., C.R., J.Lia., L.F., Y.Li.);Single-Cell Center, Chinese Academy of Sciences Key Laboratory of Biofuels and Shandong Key Laboratory of Energy Genetics, Qingdao Institute of BioEnergy and Bioprocess Technology, Chinese Academy of Sciences, Qingdao, Shandong 266101, China (K.N., X.Z., D.W., J.Hu., J.Li., S.H., X.J., X.S., A.W., J.X.); andInstitute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, China (L.B., Z.H.)
| | - Hui Xu
- State Key Laboratory of Bioreactor Engineering, East China University of Science and Technology, Shanghai 200237, China (J.F., Y.Lu., H.X., J.Hua., M.W., W.W., D.Z., G.S., C.R., J.Lia., L.F., Y.Li.);Single-Cell Center, Chinese Academy of Sciences Key Laboratory of Biofuels and Shandong Key Laboratory of Energy Genetics, Qingdao Institute of BioEnergy and Bioprocess Technology, Chinese Academy of Sciences, Qingdao, Shandong 266101, China (K.N., X.Z., D.W., J.Hu., J.Li., S.H., X.J., X.S., A.W., J.X.); andInstitute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, China (L.B., Z.H.)
| | - Jianke Huang
- State Key Laboratory of Bioreactor Engineering, East China University of Science and Technology, Shanghai 200237, China (J.F., Y.Lu., H.X., J.Hua., M.W., W.W., D.Z., G.S., C.R., J.Lia., L.F., Y.Li.);Single-Cell Center, Chinese Academy of Sciences Key Laboratory of Biofuels and Shandong Key Laboratory of Energy Genetics, Qingdao Institute of BioEnergy and Bioprocess Technology, Chinese Academy of Sciences, Qingdao, Shandong 266101, China (K.N., X.Z., D.W., J.Hu., J.Li., S.H., X.J., X.S., A.W., J.X.); andInstitute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, China (L.B., Z.H.)
| | - Minxi Wan
- State Key Laboratory of Bioreactor Engineering, East China University of Science and Technology, Shanghai 200237, China (J.F., Y.Lu., H.X., J.Hua., M.W., W.W., D.Z., G.S., C.R., J.Lia., L.F., Y.Li.);Single-Cell Center, Chinese Academy of Sciences Key Laboratory of Biofuels and Shandong Key Laboratory of Energy Genetics, Qingdao Institute of BioEnergy and Bioprocess Technology, Chinese Academy of Sciences, Qingdao, Shandong 266101, China (K.N., X.Z., D.W., J.Hu., J.Li., S.H., X.J., X.S., A.W., J.X.); andInstitute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, China (L.B., Z.H.)
| | - Weiliang Wang
- State Key Laboratory of Bioreactor Engineering, East China University of Science and Technology, Shanghai 200237, China (J.F., Y.Lu., H.X., J.Hua., M.W., W.W., D.Z., G.S., C.R., J.Lia., L.F., Y.Li.);Single-Cell Center, Chinese Academy of Sciences Key Laboratory of Biofuels and Shandong Key Laboratory of Energy Genetics, Qingdao Institute of BioEnergy and Bioprocess Technology, Chinese Academy of Sciences, Qingdao, Shandong 266101, China (K.N., X.Z., D.W., J.Hu., J.Li., S.H., X.J., X.S., A.W., J.X.); andInstitute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, China (L.B., Z.H.)
| | - Daojing Zhang
- State Key Laboratory of Bioreactor Engineering, East China University of Science and Technology, Shanghai 200237, China (J.F., Y.Lu., H.X., J.Hua., M.W., W.W., D.Z., G.S., C.R., J.Lia., L.F., Y.Li.);Single-Cell Center, Chinese Academy of Sciences Key Laboratory of Biofuels and Shandong Key Laboratory of Energy Genetics, Qingdao Institute of BioEnergy and Bioprocess Technology, Chinese Academy of Sciences, Qingdao, Shandong 266101, China (K.N., X.Z., D.W., J.Hu., J.Li., S.H., X.J., X.S., A.W., J.X.); andInstitute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, China (L.B., Z.H.)
| | - Guomin Shen
- State Key Laboratory of Bioreactor Engineering, East China University of Science and Technology, Shanghai 200237, China (J.F., Y.Lu., H.X., J.Hua., M.W., W.W., D.Z., G.S., C.R., J.Lia., L.F., Y.Li.);Single-Cell Center, Chinese Academy of Sciences Key Laboratory of Biofuels and Shandong Key Laboratory of Energy Genetics, Qingdao Institute of BioEnergy and Bioprocess Technology, Chinese Academy of Sciences, Qingdao, Shandong 266101, China (K.N., X.Z., D.W., J.Hu., J.Li., S.H., X.J., X.S., A.W., J.X.); andInstitute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, China (L.B., Z.H.)
| | - Conglin Run
- State Key Laboratory of Bioreactor Engineering, East China University of Science and Technology, Shanghai 200237, China (J.F., Y.Lu., H.X., J.Hua., M.W., W.W., D.Z., G.S., C.R., J.Lia., L.F., Y.Li.);Single-Cell Center, Chinese Academy of Sciences Key Laboratory of Biofuels and Shandong Key Laboratory of Energy Genetics, Qingdao Institute of BioEnergy and Bioprocess Technology, Chinese Academy of Sciences, Qingdao, Shandong 266101, China (K.N., X.Z., D.W., J.Hu., J.Li., S.H., X.J., X.S., A.W., J.X.); andInstitute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, China (L.B., Z.H.)
| | - Junjie Liao
- State Key Laboratory of Bioreactor Engineering, East China University of Science and Technology, Shanghai 200237, China (J.F., Y.Lu., H.X., J.Hua., M.W., W.W., D.Z., G.S., C.R., J.Lia., L.F., Y.Li.);Single-Cell Center, Chinese Academy of Sciences Key Laboratory of Biofuels and Shandong Key Laboratory of Energy Genetics, Qingdao Institute of BioEnergy and Bioprocess Technology, Chinese Academy of Sciences, Qingdao, Shandong 266101, China (K.N., X.Z., D.W., J.Hu., J.Li., S.H., X.J., X.S., A.W., J.X.); andInstitute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, China (L.B., Z.H.)
| | - Lei Fang
- State Key Laboratory of Bioreactor Engineering, East China University of Science and Technology, Shanghai 200237, China (J.F., Y.Lu., H.X., J.Hua., M.W., W.W., D.Z., G.S., C.R., J.Lia., L.F., Y.Li.);Single-Cell Center, Chinese Academy of Sciences Key Laboratory of Biofuels and Shandong Key Laboratory of Energy Genetics, Qingdao Institute of BioEnergy and Bioprocess Technology, Chinese Academy of Sciences, Qingdao, Shandong 266101, China (K.N., X.Z., D.W., J.Hu., J.Li., S.H., X.J., X.S., A.W., J.X.); andInstitute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, China (L.B., Z.H.)
| | - Shi Huang
- State Key Laboratory of Bioreactor Engineering, East China University of Science and Technology, Shanghai 200237, China (J.F., Y.Lu., H.X., J.Hua., M.W., W.W., D.Z., G.S., C.R., J.Lia., L.F., Y.Li.);Single-Cell Center, Chinese Academy of Sciences Key Laboratory of Biofuels and Shandong Key Laboratory of Energy Genetics, Qingdao Institute of BioEnergy and Bioprocess Technology, Chinese Academy of Sciences, Qingdao, Shandong 266101, China (K.N., X.Z., D.W., J.Hu., J.Li., S.H., X.J., X.S., A.W., J.X.); andInstitute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, China (L.B., Z.H.)
| | - Xiaoyan Jing
- State Key Laboratory of Bioreactor Engineering, East China University of Science and Technology, Shanghai 200237, China (J.F., Y.Lu., H.X., J.Hua., M.W., W.W., D.Z., G.S., C.R., J.Lia., L.F., Y.Li.);Single-Cell Center, Chinese Academy of Sciences Key Laboratory of Biofuels and Shandong Key Laboratory of Energy Genetics, Qingdao Institute of BioEnergy and Bioprocess Technology, Chinese Academy of Sciences, Qingdao, Shandong 266101, China (K.N., X.Z., D.W., J.Hu., J.Li., S.H., X.J., X.S., A.W., J.X.); andInstitute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, China (L.B., Z.H.)
| | - Xiaoquan Su
- State Key Laboratory of Bioreactor Engineering, East China University of Science and Technology, Shanghai 200237, China (J.F., Y.Lu., H.X., J.Hua., M.W., W.W., D.Z., G.S., C.R., J.Lia., L.F., Y.Li.);Single-Cell Center, Chinese Academy of Sciences Key Laboratory of Biofuels and Shandong Key Laboratory of Energy Genetics, Qingdao Institute of BioEnergy and Bioprocess Technology, Chinese Academy of Sciences, Qingdao, Shandong 266101, China (K.N., X.Z., D.W., J.Hu., J.Li., S.H., X.J., X.S., A.W., J.X.); andInstitute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, China (L.B., Z.H.)
| | - Anhui Wang
- State Key Laboratory of Bioreactor Engineering, East China University of Science and Technology, Shanghai 200237, China (J.F., Y.Lu., H.X., J.Hua., M.W., W.W., D.Z., G.S., C.R., J.Lia., L.F., Y.Li.);Single-Cell Center, Chinese Academy of Sciences Key Laboratory of Biofuels and Shandong Key Laboratory of Energy Genetics, Qingdao Institute of BioEnergy and Bioprocess Technology, Chinese Academy of Sciences, Qingdao, Shandong 266101, China (K.N., X.Z., D.W., J.Hu., J.Li., S.H., X.J., X.S., A.W., J.X.); andInstitute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, China (L.B., Z.H.)
| | - Lili Bai
- State Key Laboratory of Bioreactor Engineering, East China University of Science and Technology, Shanghai 200237, China (J.F., Y.Lu., H.X., J.Hua., M.W., W.W., D.Z., G.S., C.R., J.Lia., L.F., Y.Li.);Single-Cell Center, Chinese Academy of Sciences Key Laboratory of Biofuels and Shandong Key Laboratory of Energy Genetics, Qingdao Institute of BioEnergy and Bioprocess Technology, Chinese Academy of Sciences, Qingdao, Shandong 266101, China (K.N., X.Z., D.W., J.Hu., J.Li., S.H., X.J., X.S., A.W., J.X.); andInstitute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, China (L.B., Z.H.)
| | - Zanmin Hu
- State Key Laboratory of Bioreactor Engineering, East China University of Science and Technology, Shanghai 200237, China (J.F., Y.Lu., H.X., J.Hua., M.W., W.W., D.Z., G.S., C.R., J.Lia., L.F., Y.Li.);Single-Cell Center, Chinese Academy of Sciences Key Laboratory of Biofuels and Shandong Key Laboratory of Energy Genetics, Qingdao Institute of BioEnergy and Bioprocess Technology, Chinese Academy of Sciences, Qingdao, Shandong 266101, China (K.N., X.Z., D.W., J.Hu., J.Li., S.H., X.J., X.S., A.W., J.X.); andInstitute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, China (L.B., Z.H.)
| | - Jian Xu
- State Key Laboratory of Bioreactor Engineering, East China University of Science and Technology, Shanghai 200237, China (J.F., Y.Lu., H.X., J.Hua., M.W., W.W., D.Z., G.S., C.R., J.Lia., L.F., Y.Li.);Single-Cell Center, Chinese Academy of Sciences Key Laboratory of Biofuels and Shandong Key Laboratory of Energy Genetics, Qingdao Institute of BioEnergy and Bioprocess Technology, Chinese Academy of Sciences, Qingdao, Shandong 266101, China (K.N., X.Z., D.W., J.Hu., J.Li., S.H., X.J., X.S., A.W., J.X.); andInstitute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, China (L.B., Z.H.)
| | - Yuanguang Li
- State Key Laboratory of Bioreactor Engineering, East China University of Science and Technology, Shanghai 200237, China (J.F., Y.Lu., H.X., J.Hua., M.W., W.W., D.Z., G.S., C.R., J.Lia., L.F., Y.Li.);Single-Cell Center, Chinese Academy of Sciences Key Laboratory of Biofuels and Shandong Key Laboratory of Energy Genetics, Qingdao Institute of BioEnergy and Bioprocess Technology, Chinese Academy of Sciences, Qingdao, Shandong 266101, China (K.N., X.Z., D.W., J.Hu., J.Li., S.H., X.J., X.S., A.W., J.X.); andInstitute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, China (L.B., Z.H.)
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Manandhar-Shrestha K, Hildebrand M. Characterization and manipulation of a DGAT2 from the diatom Thalassiosira pseudonana: Improved TAG accumulation without detriment to growth, and implications for chloroplast TAG accumulation. ALGAL RES 2015. [DOI: 10.1016/j.algal.2015.09.004] [Citation(s) in RCA: 35] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
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Hlavova M, Turoczy Z, Bisova K. Improving microalgae for biotechnology — From genetics to synthetic biology. Biotechnol Adv 2015; 33:1194-203. [DOI: 10.1016/j.biotechadv.2015.01.009] [Citation(s) in RCA: 80] [Impact Index Per Article: 8.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/27/2014] [Revised: 01/11/2015] [Accepted: 01/17/2015] [Indexed: 01/01/2023]
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Vitova M, Bisova K, Kawano S, Zachleder V. Accumulation of energy reserves in algae: From cell cycles to biotechnological applications. Biotechnol Adv 2015; 33:1204-18. [DOI: 10.1016/j.biotechadv.2015.04.012] [Citation(s) in RCA: 131] [Impact Index Per Article: 14.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/22/2014] [Revised: 04/27/2015] [Accepted: 04/28/2015] [Indexed: 01/28/2023]
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Baroukh C, Muñoz-Tamayo R, Steyer JP, Bernard O. A state of the art of metabolic networks of unicellular microalgae and cyanobacteria for biofuel production. Metab Eng 2015; 30:49-60. [PMID: 25916794 DOI: 10.1016/j.ymben.2015.03.019] [Citation(s) in RCA: 50] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/24/2014] [Revised: 02/05/2015] [Accepted: 03/26/2015] [Indexed: 11/27/2022]
Abstract
The most promising and yet challenging application of microalgae and cyanobacteria is the production of renewable energy: biodiesel from microalgae triacylglycerols and bioethanol from cyanobacteria carbohydrates. A thorough understanding of microalgal and cyanobacterial metabolism is necessary to master and optimize biofuel production yields. To this end, systems biology and metabolic modeling have proven to be very efficient tools if supported by an accurate knowledge of the metabolic network. However, unlike heterotrophic microorganisms that utilize the same substrate for energy and as carbon source, microalgae and cyanobacteria require light for energy and inorganic carbon (CO2 or bicarbonate) as carbon source. This double specificity, together with the complex mechanisms of light capture, makes the representation of metabolic network nonstandard. Here, we review the existing metabolic networks of photoautotrophic microalgae and cyanobacteria. We highlight how these networks have been useful for gaining insight on photoautotrophic metabolism.
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Affiliation(s)
- Caroline Baroukh
- INRA UR0050, Laboratoire des Biotechnologies de l׳Environnement, avenue des étangs, 11100 Narbonne, France; Inria, BIOCORE, 2004 route des lucioles, 06902 Sophia-Antipolis, France.
| | | | - Jean-Philippe Steyer
- INRA UR0050, Laboratoire des Biotechnologies de l׳Environnement, avenue des étangs, 11100 Narbonne, France
| | - Olivier Bernard
- Inria, BIOCORE, 2004 route des lucioles, 06902 Sophia-Antipolis, France; LOV, UPMC, CNRS, UMR 7093, Station Zoologique, B.P. 28, 06234 Villefranche-sur-mer, France
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Guarnieri MT, Pienkos PT. Algal omics: unlocking bioproduct diversity in algae cell factories. PHOTOSYNTHESIS RESEARCH 2015; 123:255-63. [PMID: 24627032 DOI: 10.1007/s11120-014-9989-4] [Citation(s) in RCA: 34] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/04/2013] [Accepted: 02/17/2014] [Indexed: 05/10/2023]
Abstract
Rapid advances in "omic" technologies are helping to unlock the full potential of microalgae as multi-use feedstocks, with utility in an array of industrial biotechnology, biofuel, and biomedical applications. In turn, algae are emerging as highly attractive candidates for development as microbial cell factories. In this review, we examine the wide array of potential algal bioproducts, with a focus upon the role of omic technologies in driving bioproduct discovery and optimization in microalgal systems.
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Affiliation(s)
- Michael T Guarnieri
- National Bioenergy Center, National Renewable Energy Laboratory, 15013 Denver West Parkway, MS 3323, Golden, CO, 80401, USA,
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40
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Wang X, Ort DR, Yuan JS. Photosynthetic terpene hydrocarbon production for fuels and chemicals. PLANT BIOTECHNOLOGY JOURNAL 2015; 13:137-46. [PMID: 25626473 DOI: 10.1111/pbi.12343] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/21/2014] [Revised: 12/10/2014] [Accepted: 12/12/2014] [Indexed: 05/19/2023]
Abstract
Photosynthetic hydrocarbon production bypasses the traditional biomass hydrolysis process and represents the most direct conversion of sunlight energy into the next-generation biofuels. As a major class of biologically derived hydrocarbons with diverse structures, terpenes are also valuable in producing a variety of fungible bioproducts in addition to the advanced 'drop-in' biofuels. However, it is highly challenging to achieve the efficient redirection of photosynthetic carbon and reductant into terpene biosynthesis. In this review, we discuss four major scientific and technical barriers for photosynthetic terpene production and recent advances to address these constraints. Collectively, photosynthetic terpene production needs to be optimized in a systematic fashion, in which the photosynthesis improvement, the optimization of terpene biosynthesis pathway, the improvement of key enzymes and the enhancement of sink effect through terpene storage or secretion are all important. New advances in synthetic biology also offer a suite of potential tools to design and engineer photosynthetic terpene platforms. The systemic integration of these solutions may lead to 'disruptive' technologies to enable biofuels and bioproducts with high efficiency, yield and infrastructure compatibility.
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Affiliation(s)
- Xin Wang
- Department of Plant Pathology and Microbiology, Texas A&M University, College Station, TX, USA; Synthetic and Systems Biology Innovation Hub, Texas A&M University, College Station, TX, USA; Institute for Plant Genomics and Biotechnology, Texas A&M University, College Station, TX, USA
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41
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Reijnders MJ, van Heck RG, Lam CM, Scaife MA, Santos VAMD, Smith AG, Schaap PJ. Green genes: bioinformatics and systems-biology innovations drive algal biotechnology. Trends Biotechnol 2014; 32:617-26. [DOI: 10.1016/j.tibtech.2014.10.003] [Citation(s) in RCA: 46] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/16/2014] [Revised: 09/30/2014] [Accepted: 10/01/2014] [Indexed: 01/18/2023]
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Mooij PR, Stouten GR, van Loosdrecht MCM, Kleerebezem R. Ecology-based selective environments as solution to contamination in microalgal cultivation. Curr Opin Biotechnol 2014; 33:46-51. [PMID: 25445547 DOI: 10.1016/j.copbio.2014.11.001] [Citation(s) in RCA: 44] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/03/2014] [Revised: 10/30/2014] [Accepted: 11/03/2014] [Indexed: 11/24/2022]
Abstract
Large-scale production of energetic storage compounds by microalgae is hampered by competition and evolution. Both phenomena result in contamination and arise due to a mismatch between the desired productive microalgal strain and the constructed environment. The prevailing approach to solve this issue involves increasing the survival potential of the desired strain, for example by working in closed systems or at extreme conditions. We advocate adjusting the environment in such a way that lipid production, or any other desired characteristic, gives a competitive advantage. Competition and evolution become a value rather than a threat to processes in which the desired characteristic is ensured by a selective environment. Research and cultivation efforts will benefit from this approach as it harnesses the microalgal diversity in nature.
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Affiliation(s)
- Peter R Mooij
- Department of Biotechnology, Delft University of Technology, Julianalaan 67, 2628 BC Delft, The Netherlands.
| | - Gerben R Stouten
- Department of Biotechnology, Delft University of Technology, Julianalaan 67, 2628 BC Delft, The Netherlands
| | - Mark C M van Loosdrecht
- Department of Biotechnology, Delft University of Technology, Julianalaan 67, 2628 BC Delft, The Netherlands
| | - Robbert Kleerebezem
- Department of Biotechnology, Delft University of Technology, Julianalaan 67, 2628 BC Delft, The Netherlands
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Wang SK, Stiles AR, Guo C, Liu CZ. Microalgae cultivation in photobioreactors: An overview of light characteristics. Eng Life Sci 2014. [DOI: 10.1002/elsc.201300170] [Citation(s) in RCA: 87] [Impact Index Per Article: 8.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022] Open
Affiliation(s)
- Shi-Kai Wang
- National Key Laboratory of Biochemical Engineering; Institute of Process Engineering, Chinese Academy of Sciences; Beijing P.R. China
- School of Chemistry and Chemical Engineering; University of Chinese Academy of Sciences; Beijing P.R. China
| | - Amanda R. Stiles
- Department of Plant and Microbial Biology; University of California; Berkeley CA USA
| | - Chen Guo
- National Key Laboratory of Biochemical Engineering; Institute of Process Engineering, Chinese Academy of Sciences; Beijing P.R. China
| | - Chun-Zhao Liu
- National Key Laboratory of Biochemical Engineering; Institute of Process Engineering, Chinese Academy of Sciences; Beijing P.R. China
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Shen Y. Carbon dioxide bio-fixation and wastewater treatment via algae photochemical synthesis for biofuels production. RSC Adv 2014. [DOI: 10.1039/c4ra06441k] [Citation(s) in RCA: 59] [Impact Index Per Article: 5.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
Utilizing the energy, nutrients and CO2held within residual waste materials to provide all necessary inputs except for sunlight, the cultivation of algae becomes a closed-loop engineered ecosystem. Developing this green biotechnology is a tangible step towards a waste-free sustainable society.
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Affiliation(s)
- Yafei Shen
- Department of Environmental Science and Technology
- Interdisciplinary Graduate School of Science and Engineering
- Tokyo Institute of Technology
- Yokohama, Japan
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Bogen C, Al-Dilaimi A, Albersmeier A, Wichmann J, Grundmann M, Rupp O, Lauersen KJ, Blifernez-Klassen O, Kalinowski J, Goesmann A, Mussgnug JH, Kruse O. Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production. BMC Genomics 2013; 14:926. [PMID: 24373495 PMCID: PMC3890519 DOI: 10.1186/1471-2164-14-926] [Citation(s) in RCA: 61] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/25/2013] [Accepted: 12/19/2013] [Indexed: 01/09/2023] Open
Abstract
BACKGROUND Microalgae are gaining importance as sustainable production hosts in the fields of biotechnology and bioenergy. A robust biomass accumulating strain of the genus Monoraphidium (SAG 48.87) was investigated in this work as a potential feedstock for biofuel production. The genome was sequenced, annotated, and key enzymes for triacylglycerol formation were elucidated. RESULTS Monoraphidium neglectum was identified as an oleaginous species with favourable growth characteristics as well as a high potential for crude oil production, based on neutral lipid contents of approximately 21% (dry weight) under nitrogen starvation, composed of predominantly C18:1 and C16:0 fatty acids. Further characterization revealed growth in a relatively wide pH range and salt concentrations of up to 1.0% NaCl, in which the cells exhibited larger structures. This first full genome sequencing of a member of the Selenastraceae revealed a diploid, approximately 68 Mbp genome with a G + C content of 64.7%. The circular chloroplast genome was assembled to a 135,362 bp single contig, containing 67 protein-coding genes. The assembly of the mitochondrial genome resulted in two contigs with an approximate total size of 94 kb, the largest known mitochondrial genome within algae. 16,761 protein-coding genes were assigned to the nuclear genome. Comparison of gene sets with respect to functional categories revealed a higher gene number assigned to the category "carbohydrate metabolic process" and in "fatty acid biosynthetic process" in M. neglectum when compared to Chlamydomonas reinhardtii and Nannochloropsis gaditana, indicating a higher metabolic diversity for applications in carbohydrate conversions of biotechnological relevance. CONCLUSIONS The genome of M. neglectum, as well as the metabolic reconstruction of crucial lipid pathways, provides new insights into the diversity of the lipid metabolism in microalgae. The results of this work provide a platform to encourage the development of this strain for biotechnological applications and production concepts.
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Affiliation(s)
- Christian Bogen
- Department of Biology/Center for Biotechnology, Bielefeld University, Universitätsstrasse 27, Bielefeld 33615, Germany
| | - Arwa Al-Dilaimi
- Department of Biology/Center for Biotechnology, Bielefeld University, Universitätsstrasse 27, Bielefeld 33615, Germany
| | - Andreas Albersmeier
- Department of Biology/Center for Biotechnology, Bielefeld University, Universitätsstrasse 27, Bielefeld 33615, Germany
| | - Julian Wichmann
- Department of Biology/Center for Biotechnology, Bielefeld University, Universitätsstrasse 27, Bielefeld 33615, Germany
| | - Michael Grundmann
- Department of Biology/Center for Biotechnology, Bielefeld University, Universitätsstrasse 27, Bielefeld 33615, Germany
| | - Oliver Rupp
- Department of Biology/Center for Biotechnology, Bielefeld University, Universitätsstrasse 27, Bielefeld 33615, Germany
| | - Kyle J Lauersen
- Department of Biology/Center for Biotechnology, Bielefeld University, Universitätsstrasse 27, Bielefeld 33615, Germany
| | - Olga Blifernez-Klassen
- Department of Biology/Center for Biotechnology, Bielefeld University, Universitätsstrasse 27, Bielefeld 33615, Germany
| | | | - Alexander Goesmann
- Department of Biology/Center for Biotechnology, Bielefeld University, Universitätsstrasse 27, Bielefeld 33615, Germany
| | - Jan H Mussgnug
- Department of Biology/Center for Biotechnology, Bielefeld University, Universitätsstrasse 27, Bielefeld 33615, Germany
| | - Olaf Kruse
- Department of Biology/Center for Biotechnology, Bielefeld University, Universitätsstrasse 27, Bielefeld 33615, Germany
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Mekhalfi M, Amara S, Robert S, Carrière F, Gontero B. Effect of environmental conditions on various enzyme activities and triacylglycerol contents in cultures of the freshwater diatom, Asterionella formosa (Bacillariophyceae). Biochimie 2013; 101:21-30. [PMID: 24355202 DOI: 10.1016/j.biochi.2013.12.004] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/27/2013] [Accepted: 12/04/2013] [Indexed: 01/05/2023]
Abstract
A detailed analysis of triacylglycerols (TAGs) contents, fatty acid patterns and key enzyme activities in the freshwater diatom Asterionella formosa was performed under various conditions, including nitrate, iron and silicon limitation (stress conditions), or bicarbonate and phytohormones supplementation (stimulation conditions). Of all the conditions tested, the addition of bicarbonate produced the greatest increase (5-fold) in TAGs contents compared to the control while the biomass increased. The addition of phytohormones also allowed a significant increase in TAGs of about 3-fold while the biomass increased. Silicon, unlike iron and nitrate limitation, also triggered a significant increase in TAGs contents of 3.5-fold but negatively affected the biomass. Analysis of fatty acid profiles showed that the mono-unsaturated C16:1 fatty acid was the most abundant in A. formosa, followed by C16:0, C14:0 and eicosapentaenoic acid (EPA; C20:5 n-3). EPA levels were found to increase under nitrate and iron limitation. Glyceraldehyde-3-phosphate dehydrogenase (GAPDH), phosphoribulokinase (PRK), phosphofructokinase (PFK), glucose-6-phosphate dehydrogenase (G6PDH) and malate dehydrogenase (MDH) activities differed with growth conditions. Most enzymes were up-regulated in stimulated cells while in the case of stressed cells, the pattern of activities was more variable. Detailed analysis of all enzyme activities showed that the most important enzyme among those tested was GAPDH which could be a good candidate for genetic engineering of high lipid-producing algae. This study provides a better understanding of key enzymes and biochemical pathways involved in lipid accumulation processes in diatoms.
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Affiliation(s)
- Malika Mekhalfi
- Aix Marseille Université, CNRS, UMR 7281 Laboratoire de Bioénergétique et Ingénierie des Protéines, 31 Chemin Joseph Aiguier, 13402 Marseille Cedex 20 France
| | - Sawsan Amara
- UMR 7282 Enzymology at Interfaces and Physiology of Lipolysis, 31 Chemin Joseph Aiguier, 13402 Marseille Cedex 20 France
| | - Sylvie Robert
- UMR 7282 Enzymology at Interfaces and Physiology of Lipolysis, 31 Chemin Joseph Aiguier, 13402 Marseille Cedex 20 France
| | - Frédéric Carrière
- UMR 7282 Enzymology at Interfaces and Physiology of Lipolysis, 31 Chemin Joseph Aiguier, 13402 Marseille Cedex 20 France
| | - Brigitte Gontero
- Aix Marseille Université, CNRS, UMR 7281 Laboratoire de Bioénergétique et Ingénierie des Protéines, 31 Chemin Joseph Aiguier, 13402 Marseille Cedex 20 France.
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