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Kim T, Lee C, Kwon I, Lee J, Park SY, Kim DU, Lee J, Jin G, Yousefzadeh M, Bae H, Yoo Y, Kim JJ, Noh J, Hong S, Kwon BO, Chang WK, Chang GS, Khim JS. Integrated assessment of the natural purification capacity of tidal flat for persistent toxic substances and heavy metals in contaminated sediments. ENVIRONMENT INTERNATIONAL 2024; 185:108534. [PMID: 38458115 DOI: 10.1016/j.envint.2024.108534] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/04/2023] [Revised: 02/15/2024] [Accepted: 02/23/2024] [Indexed: 03/10/2024]
Abstract
Natural purification of pollutants is highly recognized as regulating ecosystem services; however, the purification capacity of tidal flats remains largely unknown and/or unquantified. A 60-day mesocosm transplant experiment was conducted in situ to assess the purification capacity of natural tidal flats. We adopted the advanced sediment quality triad approach, monitoring 10 endpoints, including chemical reduction, toxicity changes, and community recoveries. The results indicated that contaminated sediments rapidly recovered over time, particularly > 50% within a day, then slowly recovered up to ∼ 70% in a given period (60 days). A significant early reduction of parent pollutants was evidenced across all treatments, primarily due to active bacterial decomposition. Notably, the presence of benthic fauna and vegetated halophytes in the treatments significantly enhanced the purification of pollutants in both efficacy and efficiency. A forecast linear modeling further suggested additive effects of biota on the natural purification of tidal flats, reducing a full recovery time from 500 to 300 days. Overall, the triad approach with machine learning practices successfully demonstrated quantitative insight into the integrated assessment of natural purification.
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Affiliation(s)
- Taewoo Kim
- School of Earth and Environmental Sciences & Research Institute of Oceanography, Seoul National University, Seoul 08826, Republic of Korea.
| | - Changkeun Lee
- School of Earth and Environmental Sciences & Research Institute of Oceanography, Seoul National University, Seoul 08826, Republic of Korea.
| | - Inha Kwon
- School of Earth and Environmental Sciences & Research Institute of Oceanography, Seoul National University, Seoul 08826, Republic of Korea.
| | - Junghyun Lee
- Department of Environmental Education, Kongju National University, Gongju 32588, Republic of Korea.
| | - Shin Yeong Park
- School of Earth and Environmental Sciences & Research Institute of Oceanography, Seoul National University, Seoul 08826, Republic of Korea.
| | - Dong-U Kim
- School of Earth and Environmental Sciences & Research Institute of Oceanography, Seoul National University, Seoul 08826, Republic of Korea.
| | - Jongmin Lee
- School of Earth and Environmental Sciences & Research Institute of Oceanography, Seoul National University, Seoul 08826, Republic of Korea.
| | - Gayoung Jin
- School of Earth and Environmental Sciences & Research Institute of Oceanography, Seoul National University, Seoul 08826, Republic of Korea.
| | - Mehdi Yousefzadeh
- School of Computer Science, Institute for Research in Fundamental Sciences (IPM), Tehran, Iran.
| | - Hanna Bae
- GeoSystem Research Corporation, Gunpo 15807, Republic of Korea.
| | - Yeonjae Yoo
- Division of Environmental Science & Ecological Engineering, College of Life Science & Biotechnology, Korea University, Seoul 02841, Republic of Korea.
| | - Jae-Jin Kim
- Division of Environmental Science & Ecological Engineering, College of Life Science & Biotechnology, Korea University, Seoul 02841, Republic of Korea.
| | - Junsung Noh
- Department of Environment and Energy, Sejong University, Seoul 05006, Republic of Korea.
| | - Seongjin Hong
- Department of Marine Environmental Sciences, Chungnam National University, Daejeon 34134, Republic of Korea.
| | - Bong-Oh Kwon
- Department of Marine Biotechnology, Kunsan National University, Kunsan 54150, Republic of Korea.
| | - Won Keun Chang
- Korea Maritime Institute, Busan 49111, Republic of Korea.
| | - Gap Soo Chang
- Department of Physics and Engineering Physics, University of Saskatchewan, Saskatoon, SK S7N5E2, Canada.
| | - Jong Seong Khim
- School of Earth and Environmental Sciences & Research Institute of Oceanography, Seoul National University, Seoul 08826, Republic of Korea.
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2
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Jimoh AA, Ikhimiukor OO, Adeleke R. Prospects in the bioremediation of petroleum hydrocarbon contaminants from hypersaline environments: A review. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2022; 29:35615-35642. [PMID: 35247173 DOI: 10.1007/s11356-022-19299-4] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/31/2021] [Accepted: 02/15/2022] [Indexed: 06/14/2023]
Abstract
Hypersaline environments are underappreciated and are frequently exposed to pollution from petroleum hydrocarbons. Unlike other environs, the high salinity conditions present are a deterrent to various remediation techniques. There is also production of hypersaline waters from oil-polluted ecosystems which contain toxic hydrophobic pollutants that are threat to public health, environmental protection, and sustainability. Currently, innovative advances are being proposed for the remediation of oil-contaminated hypersaline regions. Such advancements include the exploration and stimulation of native microbial communities capable of utilizing and degrading petroleum hydrocarbons. However, prevailing salinity in these environments is unfavourable for the growth of non-halophylic microorganisms, thus limiting effective bioremediation options. An in-depth understanding of the potentials of various remediation technologies of hydrocarbon-polluted hypersaline environments is lacking. Thus, we present an overview of petroleum hydrocarbon pollution in hypersaline ecosystems and discuss the challenges and prospects associated with several technologies that may be employed in remediation of hydrocarbon pollution in the presence of delimiting high salinities. The application of biological remediation technologies including the utilization of halophilic and halotolerant microorganisms is also discussed.
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Affiliation(s)
- Abdullahi Adekilekun Jimoh
- Unit for Environmental Sciences and Management, North-West University (Potchefstroom Campus), Potchefstroom, 2520, South Africa.
- Institute for Microbial Biotechnology and Metagenomics, Department of Biotechnology, University of the Western Cape, Bellville, Cape Town, 7535, South Africa.
| | - Odion Osebhahiemen Ikhimiukor
- Environmental Microbiology and Biotechnology Laboratory, Department of Microbiology, University of Ibadan, Ibadan, Nigeria
| | - Rasheed Adeleke
- Unit for Environmental Sciences and Management, North-West University (Potchefstroom Campus), Potchefstroom, 2520, South Africa
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3
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Martins-Noguerol R, Cambrollé J, Mancilla-Leytón JM, Puerto-Marchena A, Muñoz-Vallés S, Millán-Linares MC, Millán F, Martínez-Force E, Figueroa ME, Pedroche J, Moreno-Pérez AJ. Influence of soil salinity on the protein and fatty acid composition of the edible halophyte Halimione portulacoides. Food Chem 2021; 352:129370. [PMID: 33652199 DOI: 10.1016/j.foodchem.2021.129370] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/10/2020] [Revised: 02/12/2021] [Accepted: 02/12/2021] [Indexed: 10/22/2022]
Abstract
As the worldwide population continues to rise, so does global demand for agricultural production. This scenario of uncertain food supply is exacerbated by the high salinization of soils worldwide, a serious constraint to crop productivity. In this context, there is an increasing need for alternative sustainable crops. Halophytes are thought to be a promising alternative food source due to their natural ability to grow in saline soils and their multiple potential uses in the food industry. In this study, the protein and fatty acid content of the halophyte Halimione (Atriplex) portulacoides (L.) was studied in different saline conditions. Although more studies are needed to explore the nutritional properties of H. portulacoides, the data presented here suggest that this halophyte should be considered as a promising food crop for saline agriculture.
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Affiliation(s)
- R Martins-Noguerol
- Departamento de Biología Vegetal y Ecología, Universidad de Sevilla, Spain
| | - J Cambrollé
- Departamento de Biología Vegetal y Ecología, Universidad de Sevilla, Spain
| | | | - A Puerto-Marchena
- Departamento de Biología Vegetal y Ecología, Universidad de Sevilla, Spain
| | - S Muñoz-Vallés
- Departamento de Biología Vegetal y Ecología, Universidad de Sevilla, Spain
| | - M C Millán-Linares
- Instituto de la Grasa, Consejo Superior de Investigaciones Científicas, Spain
| | - F Millán
- Instituto de la Grasa, Consejo Superior de Investigaciones Científicas, Spain
| | - E Martínez-Force
- Instituto de la Grasa, Consejo Superior de Investigaciones Científicas, Spain
| | - M E Figueroa
- Departamento de Biología Vegetal y Ecología, Universidad de Sevilla, Spain
| | - J Pedroche
- Instituto de la Grasa, Consejo Superior de Investigaciones Científicas, Spain
| | - A J Moreno-Pérez
- Instituto de la Grasa, Consejo Superior de Investigaciones Científicas, Spain.
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4
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Khoshkholgh Sima NA, Ebadi A, Reiahisamani N, Rasekh B. Bio-based remediation of petroleum-contaminated saline soils: Challenges, the current state-of-the-art and future prospects. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2019; 250:109476. [PMID: 31476519 DOI: 10.1016/j.jenvman.2019.109476] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/09/2019] [Revised: 08/17/2019] [Accepted: 08/25/2019] [Indexed: 06/10/2023]
Abstract
Exploiting synergism between plants and microbes offers a potential means of remediating soils contaminated with petroleum hydrocarbons (PHCs). Salinity alters the physicochemical characteristics of soils and suppresses the growth of both plants and soil microbes, so the bioremediation of saline soils requires the use of plants and in microbes which can tolerate salinity. This review focuses on the management of PHC-contaminated saline soils, surveying what is currently known with respect to the potential of halophytes (plants adapted to saline environments) acting in concert with synergistic microbes to degrade PHCs. The priority is to identify optimal combinations of halophyte(s) and the bacteria present as endophytes and/or associated with the rhizosphere, and to determine what are the factors which most strongly affect their viability.
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Affiliation(s)
- Nayer Azam Khoshkholgh Sima
- Agricultural Biotechnology Research Institute, Agricultural Research, Education and Extension Organization (AREEO), Karaj, Iran.
| | - Ali Ebadi
- Agricultural Biotechnology Research Institute, Agricultural Research, Education and Extension Organization (AREEO), Karaj, Iran.
| | - Narges Reiahisamani
- Agricultural Biotechnology Research Institute, Agricultural Research, Education and Extension Organization (AREEO), Karaj, Iran.
| | - Behnam Rasekh
- Microbiology and Biotechnology Research Group, Research Institute of Petroleum Industry, Tehran, Iran.
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Cheng L, Zhou Q, Yu B. Responses and roles of roots, microbes, and degrading genes in rhizosphere during phytoremediation of petroleum hydrocarbons contaminated soil. INTERNATIONAL JOURNAL OF PHYTOREMEDIATION 2019; 21:1161-1169. [PMID: 31099253 DOI: 10.1080/15226514.2019.1612841] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/22/2023]
Abstract
Rhizodegradation performed by plant roots and the associated bacteria is one of the major mechanisms that contribute to removal of petroleum hydrocarbons (PHCs) during phytoremediation. In this study, the pot-culture experiment using wild ornamental Hylotelephium spectabile (Boreau) H. Ohba was designed to explore responses and roles of roots, microbes, and degrading genes in the rhizodegradation process. Results showed that PHCs degradation rate by phytoremediation was up to 37.6-53.3% while phytoaccumulation accounted for a low proportion, just at 0.3-13.3%. A total of 37 phyla were classified through the high throughput sequencing, among which Proteobacteria, Actinobacteria, and Acidobacteria were the three most dominant phyla, accounting for >60% of the phylum frequency. The selective enrichment of PHC degraders with high salt-tolerance, including Alcanivorax and Bacteroidetes, was induced. Generally, relative abundance of the PHC degrading genes increased significantly with an increase in PHCs concentrations, and the gene copy number in the phytoremediation group was 1.46-14.44 times as much as that in the unplanted controls. Overall, the presence of PHCs and plant roots showed a stimulating effect on the development of specific degraders containing PHC degrading genes, and correspondingly, a biodegradation-beneficial community structure had been constructed to contribute to PHCs degradation in the rhizosphere.
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Affiliation(s)
- Lijuan Cheng
- Key Laboratory of Pollution Processes and Environmental Criteria/Tianjin Key Laboratory of Environmental Remediation and Pollution Control, Ministry of Education, College of Environmental Science and Engineering, Nankai University , Tianjin , China
- College of Geography and Tourism, Chongqing Normal University , Chongqing , China
| | - Qixing Zhou
- Key Laboratory of Pollution Processes and Environmental Criteria/Tianjin Key Laboratory of Environmental Remediation and Pollution Control, Ministry of Education, College of Environmental Science and Engineering, Nankai University , Tianjin , China
| | - Binbin Yu
- College of Environmental Science and Engineering, Yangzhou University , Yangzhou , China
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6
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Couto N, Ferreira AR, Guedes P, Mateus E, Ribeiro AB. Remediation potential of caffeine, oxybenzone, and triclosan by the salt marsh plants Spartina maritima and Halimione portulacoides. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2018; 25:35928-35935. [PMID: 30191527 DOI: 10.1007/s11356-018-3042-7] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/16/2017] [Accepted: 08/22/2018] [Indexed: 06/08/2023]
Abstract
Pharmaceuticals and personal care products (PPCPs) have attracted increasing concern during the last decade because of their widespread uses and continuous release to the aquatic environment. This work aimed to study the distribution of caffeine (CAF), oxybenzone (MBPh), and triclosan (TCS) when they arrive in salt marsh areas and to assess their remediation potential by two different species of salt marsh plants: Spartina maritima and Halimione portulacoides. Experiments were carried out in the laboratory either in hydroponics (sediment elutriate) or in sediment soaked in elutriate, for 10 days. Controls without plants were also carried out. CAF, MBPh, and TCS were added to the media. In unvegetated sediment soaked in elutriate, CAF was mainly in the liquid phase (83%), whereas MBPh and TCS were in the solid phase (90% and 56%, respectively); the highest remediation was achieved for TCS (40%) and mainly attributed to bioremediation. The presence of plants in sediment soaked in elutriate-enhanced PPCPs remediation, decreasing CAF and TCS levels between approximately 20-30% and MBPh by 40%.. Plant uptake, adsorption to plant roots/sediments, and bio/rhizoremediation are strong hypothesis to explain the decrease of contaminants either in water or sediment fractions, according to PPCPs characteristics.
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Affiliation(s)
- Nazaré Couto
- CENSE, Departamento de Ciências e Engenharia do Ambiente, Faculdade de Ciências e Tecnologia, Universidade Nova de Lisboa, Caparica, Portugal.
| | - Ana Rita Ferreira
- CENSE, Departamento de Ciências e Engenharia do Ambiente, Faculdade de Ciências e Tecnologia, Universidade Nova de Lisboa, Caparica, Portugal
| | - Paula Guedes
- CENSE, Departamento de Ciências e Engenharia do Ambiente, Faculdade de Ciências e Tecnologia, Universidade Nova de Lisboa, Caparica, Portugal
| | - Eduardo Mateus
- CENSE, Departamento de Ciências e Engenharia do Ambiente, Faculdade de Ciências e Tecnologia, Universidade Nova de Lisboa, Caparica, Portugal
| | - Alexandra B Ribeiro
- CENSE, Departamento de Ciências e Engenharia do Ambiente, Faculdade de Ciências e Tecnologia, Universidade Nova de Lisboa, Caparica, Portugal
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7
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Xiao F, Huisman QE. Prediction of biopersistence of hydrocarbons using a single parameter. CHEMOSPHERE 2018; 213:76-83. [PMID: 30212721 DOI: 10.1016/j.chemosphere.2018.09.035] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/15/2018] [Revised: 09/01/2018] [Accepted: 09/04/2018] [Indexed: 06/08/2023]
Abstract
Aerobic biodegradation is an important attenuation process for petroleum hydrocarbons (PHCs) in the natural environment. It has also been frequently used in engineered systems to remediate PHC-contaminated sites. A model such as a quantitative structure property relationship (QSPR) that can predict the biodegradation rate of PHCs would be helpful prior to implementing any extensive environmental measurements and bioremediation strategies. Existing QSPRs either have a large number of predictor variables that may cause overfitting or are based on a small dataset of PHCs. The goal of this study is to develop a simple, portable QSPR that has only a few predicator variables but can accurately predict the biodegradation half-lives of a large group of PHCs. To this end, more than 500 molecular variables were screened, and candidate variables were refined by a feature selection method and fitted to biodegradation data of a group of structurally heterogeneous PHCs (n = 173). The model was established by means of hierarchical clustering and classification and regression tree algorithms, which was optimized by an internal validation procedure and validated by an external dataset. The optimal QSPR model, containing only one predictor variable (the number of bonds that do not contain hydrogen), was able to accurately predict biodegradation half-lives for a wide variety of PHCs. The internal validation test indicated an overall prediction accuracy of 93%, and predictions applied to an independent external set of 64 PHCs yielded 95% accuracy. The new model is transparent and easily portable from one user to another.
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Affiliation(s)
- Feng Xiao
- Department of Civil Engineering, University of North Dakota, Grand Forks, ND 58202-8115, United States.
| | - Quinn E Huisman
- Department of Civil Engineering, University of North Dakota, Grand Forks, ND 58202-8115, United States
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8
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Ebadi A, Khoshkholgh Sima NA, Olamaee M, Hashemi M, Ghorbani Nasrabadi R. Remediation of saline soils contaminated with crude oil using the halophyte Salicornia persica in conjunction with hydrocarbon-degrading bacteria. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2018; 219:260-268. [PMID: 29751257 DOI: 10.1016/j.jenvman.2018.04.115] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/07/2018] [Revised: 03/27/2018] [Accepted: 04/29/2018] [Indexed: 06/08/2023]
Abstract
The negative impact of salinity on plant growth and the survival of rhizosphere biota complicates the application of bioremediation to crude oil-contaminated saline soils. Here, a comparison was made between the remedial effect of treating the soil with Pseudomonas aeruginosa, a salinity tolerant hydrocarbon-degrading consortium in conjunction with either the halophyte Salicornia persica or the non-halophyte Festuca arundinacea. The effect of the various treatments on salinized soils was measured by assessing the extent of total petroleum hydrocarbon (TPH) degradation, the soil's dehydrogenase activity, the abundance of the bacteria and the level of phytotoxicity as measured by a bioassay. When a non-salinized soil was assessed after a treatment period of 120 days, the ranking for effectiveness with respect to TPH removal was F. arundinacea > P. aeruginosa > S. persica > no treatment control, while in the presence of salinity, the ranking changed to S. persica > P. aeruginosa > F. arundinacea > no treatment control. Combining the planting of S. persica or F. arundinacea with P. aeruginosa inoculation ("bioaugmentation") boosted the degradation of TPH up to 5-17%. Analyses of the residual oil contamination revealed that long chain alkanes (above C20) were particularly strongly degraded following the bioaugmentation treatments. The induced increase in dehydrogenase activity and the abundance of the bacteria (3.5 and 10 fold respectively) achieved in the bioaugmentation/S. persica treatment resulted in 46-76% reduction in soil phytotoxicity in a saline soil. The indication was that bioaugmentation of halophyte can help to mitigate the adverse effects on the effectiveness of bioremediation in a crude oil-contaminated saline soil.
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Affiliation(s)
- Ali Ebadi
- Agricultural Biotechnology Research Institute of Iran (ABRII), AREEO, P. O. Box: 31535-1897, Karaj, Iran.
| | | | - Mohsen Olamaee
- Department of Soil Science, Gorgan University of Agricultural Sciences & Natural Resources, Gorgan, Iran.
| | - Maryam Hashemi
- Agricultural Biotechnology Research Institute of Iran (ABRII), AREEO, P. O. Box: 31535-1897, Karaj, Iran.
| | - Reza Ghorbani Nasrabadi
- Department of Soil Science, Gorgan University of Agricultural Sciences & Natural Resources, Gorgan, Iran.
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Oliveira V, Gomes NCM, Santos M, Almeida A, Lillebø AI, Ezequiel J, Serôdio J, Silva AMS, Simões MMQ, Rocha SM, Cunha Â. Effects of the Inoculant Strain Pseudomonas sp. SPN31 nah + and of 2-Methylnaphthalene Contamination on the Rhizosphere and Endosphere Bacterial Communities of Halimione portulacoides. Curr Microbiol 2017; 74:575-583. [DOI: 10.1007/s00284-017-1197-y] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/26/2016] [Accepted: 01/08/2017] [Indexed: 01/19/2023]
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10
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Syranidou E, Christofilopoulos S, Kalogerakis N. Juncus spp.-The helophyte for all (phyto)remediation purposes? N Biotechnol 2016; 38:43-55. [PMID: 28040555 DOI: 10.1016/j.nbt.2016.12.005] [Citation(s) in RCA: 26] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/30/2015] [Revised: 11/20/2016] [Accepted: 12/24/2016] [Indexed: 11/19/2022]
Abstract
Helophytic plants contribute significantly to the remediation of ecosystems through a wide range of physiological or biochemical mechanisms including the role of endophytic bacteria. This review highlights the services provided by Juncus spp. wetland plants, from phytoremediation of soils and groundwater with heavy metals and/or organics to municipal or industrial wastewater treatment in constructed wetlands. The data presented also provide information on the efficiency of specific Juncus spp. in response to various metals and organic compounds, in an effort to exploit the natural capabilities of autochthonous over exotic species in phytoremediation strategies. An overall successful direct (the plant itself) or indirect (through stimulation of elimination mechanisms) contribution of Juncus to remediation of the above contaminants is revealed. However, the specific characteristics of the species used, the type of the pollutant and the region, are issues that should be addressed for a successful outcome.
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Affiliation(s)
- Evdokia Syranidou
- Technical University of Crete, School of Environmental Engineering, Polytechneioupolis, Chania 73100, Greece
| | - Stavros Christofilopoulos
- Technical University of Crete, School of Environmental Engineering, Polytechneioupolis, Chania 73100, Greece
| | - Nicolas Kalogerakis
- Technical University of Crete, School of Environmental Engineering, Polytechneioupolis, Chania 73100, Greece.
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11
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Rocha J, Tacão M, Fidalgo C, Alves A, Henriques I. Diversity of endophytic Pseudomonas in Halimione portulacoides from metal(loid)-polluted salt marshes. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2016; 23:13255-13267. [PMID: 27023813 DOI: 10.1007/s11356-016-6483-x] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/07/2015] [Accepted: 03/15/2016] [Indexed: 06/05/2023]
Abstract
Phytoremediation assisted by bacteria is seen as a promising alternative to reduce metal contamination in the environment. The main goal of this study was to characterize endophytic Pseudomonas isolated from Halimione portulacoides, a metal-accumulator plant, in salt marshes contaminated with metal(loid)s. Phylogenetic analysis based on 16S rRNA and gyrB genes showed that isolates affiliated with P. sabulinigri (n = 16), P. koreensis (n = 10), P. simiae (n = 5), P. seleniipraecipitans (n = 2), P. guineae (n = 2), P. migulae (n = 1), P. fragi (n = 1), P. xanthomarina (n = 1), and Pseudomonas sp. (n = 1). Most of these species have never been described as endophytic. The majority of the isolates were resistant to three or more metal(loid)s. Antibiotic resistance was frequent among the isolates but most likely related to species-intrinsic features. Common acquired antibiotic resistance genes and integrons were not detected. Plasmids were detected in 43.6 % of the isolates. Isolates that affiliated with different species shared the same plasmid profile but attempts to transfer metal resistance to receptor strains were not successful. Phosphate solubilization and IAA production were the most prevalent plant growth promoting traits, and 20 % of the isolates showed activity against phytopathogenic bacteria. Most isolates produced four or more extracellular enzymes. Preliminary results showed that two selected isolates promote Arabidopsis thaliana root elongation. Results highlight the diversity of endophytic Pseudomonas in H. portulacoides from contaminated sites and their potential to assist phytoremediation by acting as plant growth promoters and as environmental detoxifiers.
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Affiliation(s)
- Jaqueline Rocha
- Biology Department and CESAM, University of Aveiro, 3810-193, Aveiro, Portugal
| | - Marta Tacão
- Biology Department, CESAM and iBiMED, University of Aveiro, Aveiro, Portugal
| | - Cátia Fidalgo
- Biology Department, CESAM and iBiMED, University of Aveiro, Aveiro, Portugal
| | - Artur Alves
- Biology Department and CESAM, University of Aveiro, 3810-193, Aveiro, Portugal.
| | - Isabel Henriques
- Biology Department, CESAM and iBiMED, University of Aveiro, Aveiro, Portugal
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12
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Fidalgo C, Henriques I, Rocha J, Tacão M, Alves A. Culturable endophytic bacteria from the salt marsh plant Halimione portulacoides: phylogenetic diversity, functional characterization, and influence of metal(loid) contamination. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2016; 23:10200-14. [PMID: 26875822 DOI: 10.1007/s11356-016-6208-1] [Citation(s) in RCA: 28] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/11/2015] [Accepted: 01/29/2016] [Indexed: 05/27/2023]
Abstract
Halimione portulacoides is abundant in salt marshes, accumulates mercury (Hg), and was proposed as useful for phytoremediation and pollution biomonitoring. Endophytic bacteria promote plant growth and provide compounds with industrial applications. Nevertheless, information about endophytic bacteria from H. portulacoides is scarce. Endophytic isolates (n = 665) were obtained from aboveground and belowground plant tissues, from two Hg-contaminated sites (sites E and B) and a noncontaminated site (site C), in the estuary Ria de Aveiro. Representative isolates (n = 467) were identified by 16S rRNA gene sequencing and subjected to functional assays. Isolates affiliated with Proteobacteria (64 %), Actinobacteria (23 %), Firmicutes (10 %), and Bacteroidetes (3 %). Altererythrobacter (7.4 %), Marinilactibacillus (6.4 %), Microbacterium (10.2 %), Salinicola (8.8 %), and Vibrio (7.8 %) were the most abundant genera. Notably, Salinicola (n = 58) were only isolated from site C; Hoeflea (17), Labrenzia (22), and Microbacterium (67) only from belowground tissues. This is the first report of Marinilactibacillus in the endosphere. Principal coordinate analysis showed that community composition changes with the contamination gradient and tissue. Our results suggest that the endosphere of H. portulacoides represents a diverse bacterial hotspot including putative novel species. Many isolates, particularly those affiliated to Altererythrobacter, Marinilactibacillus, Microbacterium, and Vibrio, tested positive for enzymatic activities and plant growth promoters, exposing H. portulacoides as a source of bacteria and compounds with biotechnological applications.
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Affiliation(s)
- Cátia Fidalgo
- CESAM, Departamento de Biologia, Universidade de Aveiro, Aveiro, Portugal
- iBiMED and CESAM, Departamento de Biologia, Campus de Santiago, Universidade de Aveiro, 3810-193, Aveiro, Portugal
| | - Isabel Henriques
- iBiMED and CESAM, Departamento de Biologia, Campus de Santiago, Universidade de Aveiro, 3810-193, Aveiro, Portugal.
| | - Jaqueline Rocha
- CESAM, Departamento de Biologia, Universidade de Aveiro, Aveiro, Portugal
| | - Marta Tacão
- CESAM, Departamento de Biologia, Universidade de Aveiro, Aveiro, Portugal
| | - Artur Alves
- CESAM, Departamento de Biologia, Universidade de Aveiro, Aveiro, Portugal
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Wang S, Zhang C, Lu G, Li F, Guo G. Screening of herbaceous plants for peat-enhanced rehabilitation of contaminated soil with oily sludge. INTERNATIONAL JOURNAL OF PHYTOREMEDIATION 2016; 18:62-68. [PMID: 26114406 DOI: 10.1080/15226514.2015.1058332] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/04/2023]
Abstract
A batch pot experiment using nine herbaceous species were conducted for peat enhanced rehabilitation of contaminated soil with oily sludge in the initial contents of 0%, 1.3%, 7.4%, and 12.2%, respectively. The results showed that petroleum hydrocarbons removal, plant growth indices and enzyme activities varied depending on plant species and oil contents. Cotton, ryegrass and tall fescue were effective in the rehabilitation of oily sludge contaminated soils. The total petroleum hydrocarbon (TPH) removal ranged from 30.0% to 40.0% after 170 days of treatment. Plant biomass was shown to be the preferred indicator for screening phytoremediation plant because it was closely correlated with TPH removal and enzyme activities. Peat-enhanced plant rehabilitation could be a good strategy for the treatment of oily sludge contaminated saline soils.
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Affiliation(s)
- Shijie Wang
- a State Key Laboratory of Environmental Criteria and Risk Assessment, Chinese Research Academy of Environmental Sciences , Beijing , P. R. China
- b Beijing Municipal Research Institute of Environmental Research , Beijing , P. R. China
| | - Chao Zhang
- a State Key Laboratory of Environmental Criteria and Risk Assessment, Chinese Research Academy of Environmental Sciences , Beijing , P. R. China
| | - Guilan Lu
- a State Key Laboratory of Environmental Criteria and Risk Assessment, Chinese Research Academy of Environmental Sciences , Beijing , P. R. China
| | - Fasheng Li
- a State Key Laboratory of Environmental Criteria and Risk Assessment, Chinese Research Academy of Environmental Sciences , Beijing , P. R. China
| | - Guanlin Guo
- a State Key Laboratory of Environmental Criteria and Risk Assessment, Chinese Research Academy of Environmental Sciences , Beijing , P. R. China
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Oliveira V, Gomes NCM, Almeida A, Silva AMS, Silva H, Cunha Â. Microbe-assisted phytoremediation of hydrocarbons in estuarine environments. MICROBIAL ECOLOGY 2015; 69:1-12. [PMID: 25001506 DOI: 10.1007/s00248-014-0455-9] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/13/2014] [Accepted: 06/23/2014] [Indexed: 06/03/2023]
Abstract
Estuaries are sinks for various anthropogenic contaminants, such as petroleum hydrocarbons, giving rise to significant environmental concern. The demand for organisms and processes capable of degrading pollutants in a clean, effective, and less expensive process is of great importance. Phytoremedition approaches involving plant/bacteria interactions have been explored as an alternative, and halophyte vegetation has potential for use in phytoremedition of hydrocarbon contamination. Studies with plant species potentially suitable for microbe-assisted phytoremediation are widely represented in scientific literature. However, the in-depth understanding of the biological processes associated with the re-introduction of indigenous bacteria and plants and their performance in the degradation of hydrocarbons is still the limiting step for the application of these bioremediation solutions in a field context. The intent of the present review is to summarize the sources and effects of hydrocarbon contamination in estuarine environments, the strategies currently available for bioremediation (potential and limitations), and the perspectives of the use of halophyte plants in microbe-assisted phytoremediation approaches.
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Affiliation(s)
- Vanessa Oliveira
- Centre for Environmental and Marine Studies (CESAM) and Department of Biology, University of Aveiro, Campus Universitário de Santiago, 3810-193, Aveiro, Portugal
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Wei J, Liu X, Zhang X, Chen X, Liu S, Chen L. Rhizosphere effect of Scirpus triqueter on soil microbial structure during phytoremediation of diesel-contaminated wetland. ENVIRONMENTAL TECHNOLOGY 2014; 35:514-520. [PMID: 24600892 DOI: 10.1080/09593330.2013.836549] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/03/2023]
Abstract
Though phytoremediation has been widely used to restore various contaminated sites, it is still unclear how soil microbial communities respond microecologically to plants and pollutants during the process. In this paper, batch microcosms imitating in situ phytoremediation of petroleum-contaminated wetland by Scirpus triqueter were set up to monitor the influence of plant rhizosphere effect on soil microbes. Palmitic acid, one of the main root exudates of S. triqueter, was added to strengthen rhizosphere effect. Abundances of certain microbial subgroups were quantified by phospholipid fatty acid profiles. Results showed that diesel removal extents were significantly higher in the rhizosphere (57.6 +/-4.2-65.5 +/- 6.9%) than those in bulk soil (27.8 +/-6.5-36.3 +/- 3.2%). In addition, abundances of saturated, monounsaturated, and polyunsaturated fatty acids were significantly higher (P < 0.05) in planted soil than those in the bulk soil. When it was less than 15,000 mg diesel kg soil-1, increasing diesel concentration led to higher abundances of fungi, Gram-positive and Gram-negative bacteria. The addition of palmitic acid amplified the rhizosphere effect on soil microbial populations and diesel removal. Principal component analysis revealed that plant rhizosphere effect was the dominant factor affecting microbial structure. These results provided new insights into plant-microbe-pollutant coactions responsible for diesel degradation, and they were valuable to facilitate phytoremediation of diesel contamination in wetland habitats.
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Affiliation(s)
- Jing Wei
- Laboratory of Environmental Remediation, College of Environmental and Chemical Engineering, Shanghai University, 99 Shangda Road, Shanghai 200444, People's Republic of China
| | - Xiaoyan Liu
- Laboratory of Environmental Remediation, College of Environmental and Chemical Engineering, Shanghai University, 99 Shangda Road, Shanghai 200444, People's Republic of China
| | - Xinying Zhang
- Laboratory of Environmental Remediation, College of Environmental and Chemical Engineering, Shanghai University, 99 Shangda Road, Shanghai 200444, People's Republic of China
| | - Xueping Chen
- Laboratory of Environmental Remediation, College of Environmental and Chemical Engineering, Shanghai University, 99 Shangda Road, Shanghai 200444, People's Republic of China
| | - Shanshan Liu
- Laboratory of Environmental Remediation, College of Environmental and Chemical Engineering, Shanghai University, 99 Shangda Road, Shanghai 200444, People's Republic of China
| | - Lisha Chen
- Laboratory of Environmental Remediation, College of Environmental and Chemical Engineering, Shanghai University, 99 Shangda Road, Shanghai 200444, People's Republic of China
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Hydrocarbon biodegradation in intertidal wetland sediments. Curr Opin Biotechnol 2013; 27:46-54. [PMID: 24863896 DOI: 10.1016/j.copbio.2013.10.010] [Citation(s) in RCA: 59] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/06/2013] [Revised: 10/21/2013] [Accepted: 10/24/2013] [Indexed: 12/23/2022]
Abstract
Intertidal wetlands, primarily salt marsh, mangrove and mudflats, which provide many essential ecosystem services, are under threat on numerous fronts; a situation that is made worse by crude-oil pollution. Microbes are the main vehicle for remediation of such sediments, and new discoveries, such as novel biodegradation pathways, means of accessing oil, multi-species interactions, and community-level responses to oil addition, are helping us to understand, predict and monitor the fate of oil. Despite this, there are many challenges, not least because of the heterogeneity of these ecosystems and the complexity of crude oil. For example, there is growing awareness about the toxicity of the oxygenated products that result from crude-oil weathering, which are difficult to degrade. This review highlights how developments in areas as diverse as systems biology, microbiology, ecology, biogeochemistry and analytical chemistry are enhancing our understanding of hydrocarbon biodegradation and thus bioremediation of oil-polluted intertidal wetlands.
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Khan S, Afzal M, Iqbal S, Mirza MS, Khan QM. Inoculum pretreatment affects bacterial survival, activity and catabolic gene expression during phytoremediation of diesel contaminated soil. CHEMOSPHERE 2013; 91:663-8. [PMID: 23399305 DOI: 10.1016/j.chemosphere.2013.01.025] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/27/2012] [Revised: 01/09/2013] [Accepted: 01/10/2013] [Indexed: 05/13/2023]
Abstract
Plant-bacteria partnership is a promising approach for remediating soil contaminated with organic pollutants. The colonization and metabolic activity of an inoculated microorganism depend not only on environmental conditions but also on the physiological condition of the applied microorganisms. This study assessed the influence of different inoculum pretreatments on survival, gene abundance and catabolic gene expression of an applied strain (Pantoea sp. strain BTRH79) in the rhizosphere of ryegrass vegetated in diesel contaminated soil. Maximum bacterium survival, gene abundance and expression were observed in the soil inoculated with bacterial cells that had been pregrown on complex medium, and hydrocarbon degradation and genotoxicity reduction were also high in this soil. These findings propose that use of complex media for growing plant inocula may enhance bacterial survival and colonization and subsequently the efficiency of pollutant degradation.
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Affiliation(s)
- Sumia Khan
- Soil and Environmental Biotechnology Division, National Institute for Biotechnology and Genetic Engineering, Jhang Road, Faisalabad, Pakistan
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Khan S, Afzal M, Iqbal S, Khan QM. Plant-bacteria partnerships for the remediation of hydrocarbon contaminated soils. CHEMOSPHERE 2013; 90:1317-32. [PMID: 23058201 DOI: 10.1016/j.chemosphere.2012.09.045] [Citation(s) in RCA: 184] [Impact Index Per Article: 16.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/05/2012] [Revised: 09/08/2012] [Accepted: 09/10/2012] [Indexed: 05/06/2023]
Abstract
Plant-bacteria partnerships have been extensively studied and applied to improve crop yield. In addition to their application in agriculture, a promising field to exploit plant-bacteria partnerships is the remediation of soil and water polluted with hydrocarbons. Application of effective plant-bacteria partnerships for the remediation of hydrocarbons depend mainly on the presence and metabolic activities of plant associated rhizo- and endophytic bacteria possessing specific genes required for the degradation of hydrocarbon pollutants. Plants and their associated bacteria interact with each other whereby plant supplies the bacteria with a special carbon source that stimulates the bacteria to degrade organic contaminants in the soil. In return, plant associated-bacteria can support their host plant to overcome contaminated-induced stress responses, and improve plant growth and development. In addition, plants further get benefits from their associated-bacteria possessing hydrocarbon-degradation potential, leading to enhanced hydrocarbon mineralization and lowering of both phytotoxicity and evapotranspiration of volatile hydrocarbons. A better understanding of plant-bacteria partnerships could be exploited to enhance the remediation of hydrocarbon contaminated soils in conjunction with sustainable production of non-food crops for biomass and biofuel production.
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Affiliation(s)
- Sumia Khan
- National Institute for Biotechnology and Genetic Engineering, Faisalabad, Pakistan
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Couto MNPFS, Pinto D, Basto MCP, Vasconcelos TSD. Role of natural attenuation, phytoremediation and hybrid technologies in the remediation of a refinery soil with old/recent petroleum hydrocarbons contamination. ENVIRONMENTAL TECHNOLOGY 2012; 33:2097-2104. [PMID: 23240204 DOI: 10.1080/09593330.2012.660646] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/01/2023]
Abstract
Within a search for a biological remediation technology to remove petroleum hydrocarbons (PHC) from a contaminated soil from a refinery, the potential of monitored natural attenuation (MNA) was compared with the use of transplants of Cortaderia selloana both in the absence and in the presence of soil amendments. After 31 months of experiments, MNA was effective in removing most of the recent PHC contamination (50% of the initial total contamination) at 5-20 cm depth. The presence of weathered contamination explains the existence of an established community of PHC degraders, as can be inferred by the most probable number technique. C. selloana, in its turn, showed capacity to mobilize the most recalcitrant fraction of PHC to its roots, nevertheless masking its remediation capacity. The use of a hybrid technology (C. selloana together with treatments with a surfactant and a bioaugmentation product) improved the removal of PHC at 15-20 cm depth, the presence of C. selloana facilitating the migration of additives into the deeper layers of soil, which can be considered a secondary but positive role of the plant. In the surface soil layer, which was exposed to both microorganisms and the atmosphere, a further 20% of weathered PHC contamination disappeared (70% total removal) as a result of photo- and chemical degradation. Periodic revolving of the soil, like tillage, to expose all the contaminated soil to the atmosphere will therefore be a reliable option for reducing the contamination of the refinery soil if conditions (space and equipment) permit this operation.
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Couto MNPFS, Basto MCP, Vasconcelos MTSD. Suitability of Scirpus maritimus for petroleum hydrocarbons remediation in a refinery environment. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2012; 19:86-95. [PMID: 21688070 DOI: 10.1007/s11356-011-0538-9] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/22/2010] [Accepted: 05/31/2011] [Indexed: 05/30/2023]
Abstract
PURPOSE In the ambit of a project searching for appropriate biological approaches for recovering a refinery soil contaminated with petroleum hydrocarbons (PHC), we compared results obtained in the absence and in the presence of the salt marsh plant Scirpus maritimus or Juncus maritimus or an association of these two plants, which were tested in the refinery environment. Synergistic effects caused by addition of a non-ionic surfactant and/or a bioaugmentation product were also investigated. Major challenges of this study were: field conditions and weathered contamination. METHODS Transplants of the plants were carried out in individual containers filled with a weathered contaminated soil, which was recontaminated with turbine oil with two purposes: for increasing PHC level and allowing a comparison of the potential of plants for remediation of ancient and recent contamination. RESULTS Analysis of total PHC led to the conclusion that, after 24-month exposure, neither J. maritimus nor the association caused any improvement in remediation. In contrast, S. maritimus revealed potential for PHC remediation, favoring degradation of both recent and older contamination (which was refractory to natural attenuation). About 15% of remediation improvement was found in the soil layer with higher root density (5-10 cm). A more marked improvement in that layer (28%) was observed when non-ionic surfactant amendment and bioaugmentation were used jointly. CONCLUSIONS The fact that S. maritimus has demonstrated capability for PHC remediation, leads to admit that it has potential to be also used for recovering sediments that have suffered accidental oil spills.
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Affiliation(s)
- M Nazaré P F S Couto
- CIIMAR/CIMAR, Centro de Investigação Marinha e Ambiental, Universidade do Porto, Porto, Portugal.
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