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Yang T, He Y, Wu L, Wang H, Wang X, Li Y, Guo Y, Wu S, Liu X. The effects of object size on spatial orientation: an eye movement study. Front Neurosci 2023; 17:1197618. [PMID: 38027477 PMCID: PMC10668018 DOI: 10.3389/fnins.2023.1197618] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/31/2023] [Accepted: 10/30/2023] [Indexed: 12/01/2023] Open
Abstract
Introduction The processing of visual information in the human brain is divided into two streams, namely, the dorsal and ventral streams, object identification is related to the ventral stream and motion processing is related to the dorsal stream. Object identification is interconnected with motion processing, object size was found to affect the information processing of motion characteristics in uniform linear motion. However, whether the object size affects the spatial orientation is still unknown. Methods Thirty-eight college students were recruited to participate in an experiment based on the spatial visualization dynamic test. Eyelink 1,000 Plus was used to collect eye movement data. The final direction difference (the difference between the final moving direction of the target and the final direction of the moving target pointing to the destination point), rotation angle (the rotation angle of the knob from the start of the target movement to the moment of key pressing) and eye movement indices under conditions of different object sizes and motion velocities were compared. Results The final direction difference and rotation angle under the condition of a 2.29°-diameter moving target and a 0.76°-diameter destination point were significantly smaller than those under the other conditions (a 0.76°-diameter moving target and a 0.76°-diameter destination point; a 0.76°-diameter moving target and a 2.29°-diameter destination point). The average pupil size under the condition of a 2.29°-diameter moving target and a 0.76°-diameter destination point was significantly larger than the average pupil size under other conditions (a 0.76°-diameter moving target and a 0.76°-diameter destination point; a 0.76°-diameter moving target and a 2.29°-diameter destination point). Discussion A relatively large moving target can resist the landmark attraction effect in spatial orientation, and the influence of object size on spatial orientation may originate from differences in cognitive resource consumption. The present study enriches the interaction theory of the processing of object characteristics and motion characteristics and provides new ideas for the application of eye movement technology in the examination of spatial orientation ability.
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Affiliation(s)
- Tianqi Yang
- Department of Military Medical Psychology, Air Force Medical University, Xi’an, China
| | - Yang He
- Department of Military Medical Psychology, Air Force Medical University, Xi’an, China
| | - Lin Wu
- Department of Military Medical Psychology, Air Force Medical University, Xi’an, China
| | - Hui Wang
- Department of Military Medical Psychology, Air Force Medical University, Xi’an, China
| | - Xiuchao Wang
- Department of Military Medical Psychology, Air Force Medical University, Xi’an, China
| | - Yahong Li
- Central Theater Command Air Force Hospital of PLA, Datong, China
| | - Yaning Guo
- Department of Military Medical Psychology, Air Force Medical University, Xi’an, China
| | - Shengjun Wu
- Department of Military Medical Psychology, Air Force Medical University, Xi’an, China
| | - Xufeng Liu
- Department of Military Medical Psychology, Air Force Medical University, Xi’an, China
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Rosenberg A, Thompson LW, Doudlah R, Chang TY. Neuronal Representations Supporting Three-Dimensional Vision in Nonhuman Primates. Annu Rev Vis Sci 2023; 9:337-359. [PMID: 36944312 DOI: 10.1146/annurev-vision-111022-123857] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/23/2023]
Abstract
The visual system must reconstruct the dynamic, three-dimensional (3D) world from ambiguous two-dimensional (2D) retinal images. In this review, we synthesize current literature on how the visual system of nonhuman primates performs this transformation through multiple channels within the classically defined dorsal (where) and ventral (what) pathways. Each of these channels is specialized for processing different 3D features (e.g., the shape, orientation, or motion of objects, or the larger scene structure). Despite the common goal of 3D reconstruction, neurocomputational differences between the channels impose distinct information-limiting constraints on perception. Convergent evidence further points to the little-studied area V3A as a potential branchpoint from which multiple 3D-fugal processing channels diverge. We speculate that the expansion of V3A in humans may have supported the emergence of advanced 3D spatial reasoning skills. Lastly, we discuss future directions for exploring 3D information transmission across brain areas and experimental approaches that can further advance the understanding of 3D vision.
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Affiliation(s)
- Ari Rosenberg
- Department of Neuroscience, School of Medicine and Public Health, University of Wisconsin-Madison, Madison, Wisconsin, USA;
| | - Lowell W Thompson
- Department of Neuroscience, School of Medicine and Public Health, University of Wisconsin-Madison, Madison, Wisconsin, USA;
| | - Raymond Doudlah
- Department of Neuroscience, School of Medicine and Public Health, University of Wisconsin-Madison, Madison, Wisconsin, USA;
| | - Ting-Yu Chang
- School of Medicine, National Defense Medical Center, Taipei, Taiwan
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Ayzenberg V, Simmons C, Behrmann M. Temporal asymmetries and interactions between dorsal and ventral visual pathways during object recognition. Cereb Cortex Commun 2023; 4:tgad003. [PMID: 36726794 PMCID: PMC9883614 DOI: 10.1093/texcom/tgad003] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/23/2022] [Revised: 12/30/2022] [Accepted: 01/02/2023] [Indexed: 01/15/2023] Open
Abstract
Despite their anatomical and functional distinctions, there is growing evidence that the dorsal and ventral visual pathways interact to support object recognition. However, the exact nature of these interactions remains poorly understood. Is the presence of identity-relevant object information in the dorsal pathway simply a byproduct of ventral input? Or, might the dorsal pathway be a source of input to the ventral pathway for object recognition? In the current study, we used high-density EEG-a technique with high temporal precision and spatial resolution sufficient to distinguish parietal and temporal lobes-to characterise the dynamics of dorsal and ventral pathways during object viewing. Using multivariate analyses, we found that category decoding in the dorsal pathway preceded that in the ventral pathway. Importantly, the dorsal pathway predicted the multivariate responses of the ventral pathway in a time-dependent manner, rather than the other way around. Together, these findings suggest that the dorsal pathway is a critical source of input to the ventral pathway for object recognition.
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Affiliation(s)
- Vladislav Ayzenberg
- Neuroscience Institute and Psychology Department, Carnegie Mellon University, Pittsburgh, PA 15213, USA
| | - Claire Simmons
- School of Medicine, University of Pittsburgh, Pittsburgh, PA 15213, USA
| | - Marlene Behrmann
- Neuroscience Institute and Psychology Department, Carnegie Mellon University, Pittsburgh, PA 15213, USA
- Department of Ophthalmology, University of Pittsburgh, Pittsburgh, PA 15213, USA
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Pelekanos V, Premereur E, Mitchell AS. Structural Connectivity Changes After Fornix Transection in Macaques Using Probabilistic Diffusion Tractography. ADVANCES IN EXPERIMENTAL MEDICINE AND BIOLOGY 2023; 1423:11-20. [PMID: 37525029 DOI: 10.1007/978-3-031-31978-5_2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 08/02/2023]
Abstract
The fornix, the limbic system's white matter tract connecting the extended hippocampal system to subcortical structures of the medial diencephalon, is strongly associated with learning and memory in humans and nonhuman primates (NHPs). Here, we sought to investigate alterations in structural connectivity across key cortical and subcortical regions after fornix transection in NHPs. We collected diffusion-weighted MRI (dMRI) data from three macaque monkeys that underwent bilateral fornix transection during neurosurgery and from four age- and cohort-matched control macaques that underwent surgery to implant a head-post but remained neurologically intact. dMRI data were collected from both groups at two time points, before and after the surgeries, and scans took place at around the same time for the two groups. We used probabilistic tractography and employed the number of tracking streamlines to quantify connectivity across our regions of interest (ROIs), in all dMRI sessions. In the neurologically intact monkeys, we observed high connectivity across certain ROIs, including the CA3 hippocampal subfield with the retrosplenial cortex (RSC), the anterior thalamus with the RSC, and the RSC with the anterior cingulate cortex (ACC). However, we found that, compared to the control group, the fornix-transected monkeys showed marked, significant, connectivity changes including increases between the anterior thalamus and the ACC and between the CA3 and the ACC, as well as decreases between the CA3 and the RSC. Our results highlight cortical and subcortical network changes after fornix transection and identify candidate indirect connectivity routes that may support memory functions after damage and/or neurodegeneration.
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Affiliation(s)
| | - Elsie Premereur
- Laboratory for Neuro- and Psychophysiology, KU Leuven, Leuven, Belgium
| | - Anna S Mitchell
- Department of Experimental Psychology, University of Oxford, Oxford, UK
- Department of Psychology, Hearing and Speech, University of Canterbury, Christchurch, New Zealand
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Kody E, Diwadkar VA. Magnocellular and parvocellular contributions to brain network dysfunction during learning and memory: Implications for schizophrenia. J Psychiatr Res 2022; 156:520-531. [PMID: 36351307 DOI: 10.1016/j.jpsychires.2022.10.055] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 05/09/2022] [Revised: 10/24/2022] [Accepted: 10/28/2022] [Indexed: 11/07/2022]
Abstract
Memory deficits are core features of schizophrenia, and a central aim in biological psychiatry is to identify the etiology of these deficits. Scrutiny is naturally focused on the dorsolateral prefrontal cortex and the hippocampal cortices, given these structures' roles in memory and learning. The fronto-hippocampal framework is valuable but restrictive. Network-based underpinnings of learning and memory are substantially diverse and include interactions between hetero-modal and early sensory networks. Thus, a loss of fidelity in sensory information may impact memorial and cognitive processing in higher-order brain sub-networks, becoming a sensory source for learning and memory deficits. In this overview, we suggest that impairments in magno- and parvo-cellular visual pathways result in degraded inputs to core learning and memory networks. The ascending cascade of aberrant neural events significantly contributes to learning and memory deficits in schizophrenia. We outline the network bases of these effects, and suggest that any network perspectives of dysfunction in schizophrenia must assess the impact of impaired perceptual contributions. Finally, we speculate on how this framework enriches the space of biomarkers and expands intervention strategies to ameliorate this prototypical disconnection syndrome.
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Affiliation(s)
- Elizabeth Kody
- Department of Psychiatry and Behavioral Neurosciences, Wayne State University School of Medicine, USA
| | - Vaibhav A Diwadkar
- Department of Psychiatry and Behavioral Neurosciences, Wayne State University School of Medicine, USA.
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Chen X, Liao M, Jiang P, Sun H, Liu L, Gong Q. Abnormal effective connectivity in visual cortices underlies stereopsis defects in amblyopia. Neuroimage Clin 2022; 34:103005. [PMID: 35421811 PMCID: PMC9011166 DOI: 10.1016/j.nicl.2022.103005] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/16/2021] [Revised: 02/15/2022] [Accepted: 04/05/2022] [Indexed: 02/08/2023]
Abstract
Abnormal effective connectivity inherent stereopsis defects in amblyopia was studied. A weakened connection from V2v to LO2 relates to stereopsis defects in amblyopia. Higher-order visual cortices may serve as key nodes to the stereopsis defects. An independent longitudinal dataset was used to validate the obtained results.
The neural basis underlying stereopsis defects in patients with amblyopia remains unclear, which hinders the development of clinical therapy. This study aimed to investigate visual network abnormalities in patients with amblyopia and their associations with stereopsis function. Spectral dynamic causal modeling methods were employed for resting-state functional magnetic resonance imaging data to investigate the effective connectivity (EC) among 14 predefined regions of interest in the dorsal and ventral visual pathways. We adopted two independent datasets, including a cross-sectional and a longitudinal dataset. In the cross-sectional dataset, we compared group differences in EC between 31 patients with amblyopia (mean age: 26.39 years old) and 31 healthy controls (mean age: 25.71 years old) and investigated the association between EC and stereoacuity. In addition, we explored EC changes after perceptual learning in a novel longitudinal dataset including 9 patients with amblyopia (mean age: 15.78 years old). We found consistent evidence from the two datasets indicating that the aberrant EC from V2v to LO2 is crucial for the stereoscopic deficits in the patients with amblyopia: it was weaker in the patients than in the controls, showed a positive linear relationship with the stereoscopic function, and increased after perceptual learning in the patients. In addition, higher-level dorsal (V3d, V3A, and V3B) and ventral areas (LO1 and LO2) were important nodes in the network of abnormal ECs associated with stereoscopic deficits in the patients with amblyopia. Our research provides insights into the neural mechanism underlying stereopsis deficits in patients with amblyopia and provides candidate targets for focused stimulus interventions to enhance the efficacy of clinical treatment for the improvement of stereopsis deficiency.
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Affiliation(s)
- Xia Chen
- Department of Optometry and Visual Science, West China Hospital, Sichuan University, Chengdu, China
| | - Meng Liao
- Department of Optometry and Visual Science, West China Hospital, Sichuan University, Chengdu, China; Department of Ophthalmology, West China Hospital, Sichuan University, Chengdu, China
| | - Ping Jiang
- Huaxi MR Research Center (HMRRC), Department of Radiology, West China Hospital of Sichuan University, Chengdu, China; Research Unit of Psychoradiology, Chinese Academy of Medical Sciences, Chengdu, China; Functional and Molecular Imaging Key Laboratory of Sichuan Province, Chengdu, China.
| | - Huaiqiang Sun
- Huaxi MR Research Center (HMRRC), Department of Radiology, West China Hospital of Sichuan University, Chengdu, China; Imaging Research Core Facilities, West China Hospital of Sichuan University, Chengdu, Sichuan, China
| | - Longqian Liu
- Department of Optometry and Visual Science, West China Hospital, Sichuan University, Chengdu, China; Department of Ophthalmology, West China Hospital, Sichuan University, Chengdu, China.
| | - Qiyong Gong
- Huaxi MR Research Center (HMRRC), Department of Radiology, West China Hospital of Sichuan University, Chengdu, China; Research Unit of Psychoradiology, Chinese Academy of Medical Sciences, Chengdu, China; Functional and Molecular Imaging Key Laboratory of Sichuan Province, Chengdu, China
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Li Y, Shen L, Sun M. Electroencephalography Study of Frontal Lobe Evoked by Dynamic Random-Dot Stereogram. Invest Ophthalmol Vis Sci 2022; 63:7. [PMID: 35522304 PMCID: PMC9078048 DOI: 10.1167/iovs.63.5.7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/04/2022] Open
Abstract
Purpose The purpose of this study was to investigate the cortical electrical activity and electroencephalography (EEG) features of the frontal lobe evoked by dynamic random dot stereogram (DRDS) and to probe the functional connectivity (FC) between the frontal lobe and occipital lobe when processing 3D perception based on the binocular disparity. Methods The EEG experiment involved 14 healthy adults with normal stereopsis (<60″) and normal corrected visual acuity (20/20). The Neuroscan system and 32-channel EEG cap were used to record EEG signals based on the DRDS stimuli. The maximum energies of 3 frequency bands (theta-/alpha- /beta-wave) from 13 interesting channels (FP1, FP2, F7, F3, FZ, F4, F8, FC3, FCZ, FC4, O1, OZ, and O2) located in the frontal and occipital lobes were calculated and analyzed. The FC between any two electrodes from the frontal and occipital lobes was calculated based on the Phase lag index (PLI). Results The maximum powers of theta- and alpha-waves in most channels of the frontal and occipital lobes were significantly increased (P < 0.05) when the depth perception was evoked by DRDS above the threshold, compared with that without stereo vision. The changes in the maximum powers of both theta- and alpha-waves were significantly different among the 13 electrodes (P = 0.0004 and 0.0015, respectively). Tukey's multiple comparisons showed that the changes in the maximum powers of theta-wave were significantly different in F8 vs. O1, F8 vs. OZ, and F4 vs. O1 (P = 0.0186, 0.0444, and 0.0412, respectively). Moreover, the changes in the maximum powers of alpha-waves were significantly different in FP1 vs. O1 (P = 0.0182). The FCs of theta-waves between the frontal channels and the occipital channels were significantly enhanced when processing the depth perception, compared with those without stereopsis. There was no significant change in the FCs of the alpha-waves when having 3D perception except for FC between F8 and O1 and FC between F8 and OZ. Conclusions The cortical electrical activity in the frontal lobe and the functional connectivity between the frontal lobe and the occipital lobe increase when participating in the processing binocular disparity and obtaining 3D perception. Theta-waves in the frontal lobe may be crucial in the stereo vision.
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Affiliation(s)
- Yueping Li
- Pediatric Ophthalmology and Strabismus Department, Tianjin Eye Hospital, Clinical College of Ophthalmology of Tianjin Medical University, Tianjin Key Laboratory of Ophthalmology and Vision Science, Tianjin, China
| | - Lili Shen
- School of Electronic Information Engineering, Tianjin University, Tianjin, China
| | - Mingyang Sun
- School of Electronic Information Engineering, Tianjin University, Tianjin, China
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Gurariy G, Mruczek REB, Snow JC, Caplovitz GP. Using High-Density Electroencephalography to Explore Spatiotemporal Representations of Object Categories in Visual Cortex. J Cogn Neurosci 2022; 34:967-987. [PMID: 35286384 PMCID: PMC9169880 DOI: 10.1162/jocn_a_01845] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/04/2022]
Abstract
Visual object perception involves neural processes that unfold over time and recruit multiple regions of the brain. Here, we use high-density EEG to investigate the spatiotemporal representations of object categories across the dorsal and ventral pathways. In , human participants were presented with images from two animate object categories (birds and insects) and two inanimate categories (tools and graspable objects). In , participants viewed images of tools and graspable objects from a different stimulus set, one in which a shape confound that often exists between these categories (elongation) was controlled for. To explore the temporal dynamics of object representations, we employed time-resolved multivariate pattern analysis on the EEG time series data. This was performed at the electrode level as well as in source space of two regions of interest: one encompassing the ventral pathway and another encompassing the dorsal pathway. Our results demonstrate shape, exemplar, and category information can be decoded from the EEG signal. Multivariate pattern analysis within source space revealed that both dorsal and ventral pathways contain information pertaining to shape, inanimate object categories, and animate object categories. Of particular interest, we note striking similarities obtained in both ventral stream and dorsal stream regions of interest. These findings provide insight into the spatio-temporal dynamics of object representation and contribute to a growing literature that has begun to redefine the traditional role of the dorsal pathway.
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Lega C, Chelazzi L, Cattaneo L. Two Distinct Systems Represent Contralateral and Ipsilateral Sensorimotor Processes in the Human Premotor Cortex: A Dense TMS Mapping Study. Cereb Cortex 2021; 30:2250-2266. [PMID: 31828296 DOI: 10.1093/cercor/bhz237] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/07/2019] [Revised: 08/19/2019] [Accepted: 09/13/2019] [Indexed: 11/12/2022] Open
Abstract
Animal brains contain behaviorally committed representations of the surrounding world, which integrate sensory and motor information. In primates, sensorimotor mechanisms reside in part in the premotor cortex (PM), where sensorimotor neurons are topographically clustered according to functional specialization. Detailed functional cartography of the human PM is still under investigation. We explored the topographic distribution of spatially dependent sensorimotor functions in healthy volunteers performing left or right, hand or foot, responses to visual cues presented in the left or right hemispace, thus combining independently stimulus side, effector side, and effector type. Event-related transcranial magnetic stimulation was applied to single spots of a dense grid of 10 points on the participants' left hemiscalp, covering the whole PM. Results showed: (1) spatially segregated hand and foot representations, (2) focal representations of contralateral cues and movements in the dorsal PM, and (3) distributed representations of ipsilateral cues and movements in the ventral and dorso-medial PM. The present novel causal information indicates that (1) the human PM is somatotopically organized and (2) the left PM contains sensory-motor representations of both hemispaces and of both hemibodies, but the hemispace and hemibody contralateral to the PM are mapped on a distinct, nonoverlapping cortical region compared to the ipsilateral ones.
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Affiliation(s)
- Carlotta Lega
- Department of Neuroscience, Biomedicine and Movement, University of Verona, Verona, Italy
| | - Leonardo Chelazzi
- Department of Neuroscience, Biomedicine and Movement, University of Verona, Verona, Italy.,Italian Institute of Neuroscience, Section of Verona, Verona, Italy
| | - Luigi Cattaneo
- Department of Neuroscience, Biomedicine and Movement, University of Verona, Verona, Italy.,Italian Institute of Neuroscience, Section of Verona, Verona, Italy
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Lin YH, Dadario NB, Hormovas J, Young IM, Briggs RG, MacKenzie AE, Palejwala AH, Fonseka RD, Kim SJ, Tanglay O, Fletcher LR, Abraham CJ, Conner AK, O'Donoghue DL, Sughrue ME. Anatomy and White Matter Connections of the Superior Parietal Lobule. Oper Neurosurg (Hagerstown) 2021; 21:E199-E214. [PMID: 34246196 DOI: 10.1093/ons/opab174] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/26/2020] [Accepted: 03/19/2021] [Indexed: 11/14/2022] Open
Abstract
BACKGROUND The superior parietal lobule (SPL) is involved in somatosensory and visuospatial integration with additional roles in attention, written language, and working memory. A detailed understanding of the exact location and nature of associated white matter tracts could improve surgical decisions and subsequent postoperative morbidity related to surgery in and around this gyrus. OBJECTIVE To characterize the fiber tracts of the SPL based on relationships to other well-known neuroanatomic structures through diffusion spectrum imaging (DSI)-based fiber tracking validated by gross anatomical dissection as ground truth. METHODS Neuroimaging data of 10 healthy, adult control subjects was obtained from a publicly accessible database published in Human Connectome Project for subsequent tractographic analyses. White matter tracts were mapped between both cerebral hemispheres, and a lateralization index was calculated based on resultant tract volumes. Post-mortem dissections of 10 cadavers identified the location of major tracts and validated our tractography results based on qualitative visual agreement. RESULTS We identified 9 major connections of the SPL: U-fiber, superior longitudinal fasciculus, inferior longitudinal fasciculus, inferior fronto-occipital fasciculus, middle longitudinal fasciculus, extreme capsule, vertical occipital fasciculus, cingulum, and corpus callosum. There was no significant fiber lateralization detected. CONCLUSION The SPL is an important region implicated in a variety of tasks involving visuomotor and visuospatial integration. Improved understanding of the fiber bundle anatomy elucidated in this study can provide invaluable information for surgical treatment decisions related to this region.
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Affiliation(s)
- Yueh-Hsin Lin
- Centre for Minimally Invasive Neurosurgery, Prince of Wales Private Hospital, Sydney, Australia
| | - Nicholas B Dadario
- Rutgers Robert Wood Johnson School of Medicine, New Brunswick, New Jersey, USA
| | - Jorge Hormovas
- Centre for Minimally Invasive Neurosurgery, Prince of Wales Private Hospital, Sydney, Australia
| | | | - Robert G Briggs
- Department of Neurosurgery, University of Oklahoma Health Sciences Center, Oklahoma City, Oklahoma
| | - Alana E MacKenzie
- Centre for Minimally Invasive Neurosurgery, Prince of Wales Private Hospital, Sydney, Australia
| | - Ali H Palejwala
- Department of Neurosurgery, University of Oklahoma Health Sciences Center, Oklahoma City, Oklahoma
| | - R Dineth Fonseka
- Centre for Minimally Invasive Neurosurgery, Prince of Wales Private Hospital, Sydney, Australia
| | - Sihyong J Kim
- Centre for Minimally Invasive Neurosurgery, Prince of Wales Private Hospital, Sydney, Australia
| | - Onur Tanglay
- Centre for Minimally Invasive Neurosurgery, Prince of Wales Private Hospital, Sydney, Australia
| | - Luke R Fletcher
- Department of Neurosurgery, University of Oklahoma Health Sciences Center, Oklahoma City, Oklahoma
| | - Carol J Abraham
- Department of Neurosurgery, University of Oklahoma Health Sciences Center, Oklahoma City, Oklahoma
| | - Andrew K Conner
- Department of Neurosurgery, University of Oklahoma Health Sciences Center, Oklahoma City, Oklahoma
| | - Daniel L O'Donoghue
- Department of Cell Biology, University of Oklahoma Health Sciences Center, Oklahoma City, Oklahoma
| | - Michael E Sughrue
- Centre for Minimally Invasive Neurosurgery, Prince of Wales Private Hospital, Sydney, Australia
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Li Z. Unique Neural Activity Patterns Among Lower Order Cortices and Shared Patterns Among Higher Order Cortices During Processing of Similar Shapes With Different Stimulus Types. Iperception 2021; 12:20416695211018222. [PMID: 34104383 PMCID: PMC8161881 DOI: 10.1177/20416695211018222] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/21/2020] [Accepted: 04/28/2021] [Indexed: 11/16/2022] Open
Abstract
We investigated the neural mechanism of the processing of three-dimensional (3D) shapes defined by disparity and perspective. We measured blood oxygenation level-dependent signals as participants viewed and classified 3D images of convex-concave shapes. According to the cue (disparity or perspective) and element type (random dots or black and white dotted lines), three types of stimuli were used: random dot stereogram, black and white dotted lines with perspective, and black and white dotted lines with binocular disparity. The blood oxygenation level-dependent images were then classified by multivoxel pattern analysis. To identify areas selective to shape, we assessed convex-concave classification accuracy with classifiers trained and tested using signals evoked by the same stimulus type (same cue and element type). To identify cortical regions with similar neural activity patterns regardless of stimulus type, we assessed the convex-concave classification accuracy of transfer classification in which classifiers were trained and tested using different stimulus types (different cues or element types). Classification accuracy using the same stimulus type was high in the early visual areas and subregions of the intraparietal sulcus (IPS), whereas transfer classification accuracy was high in the dorsal subregions of the IPS. These results indicate that the early visual areas process the specific features of stimuli, whereas the IPS regions perform more generalized processing of 3D shapes, independent of a specific stimulus type.
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Affiliation(s)
- Zhen Li
- Department of Psychology, The University of Hong Kong, Hong Kong, China; Graduate School of Engineering, Kochi University of Technology, Kochi, Japan
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12
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Prichard A, Chhibber R, Athanassiades K, Chiu V, Spivak M, Berns GS. 2D or not 2D? An fMRI study of how dogs visually process objects. Anim Cogn 2021; 24:1143-1151. [PMID: 33772693 DOI: 10.1007/s10071-021-01506-3] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/05/2021] [Revised: 03/09/2021] [Accepted: 03/12/2021] [Indexed: 10/21/2022]
Abstract
Given humans' habitual use of screens, they rarely consider potential differences when viewing two-dimensional (2D) stimuli and real-world versions of dimensional stimuli. Dogs also have access to many forms of screens and touchpads, with owners even subscribing to dog-directed content. Humans understand that 2D stimuli are representations of real-world objects, but do dogs? In canine cognition studies, 2D stimuli are almost always used to study what is normally 3D, like faces, and may assume that both 2D and 3D stimuli are represented in the brain the same way. Here, we used awake fMRI in 15 dogs to examine the neural mechanisms underlying dogs' perception of two- and three-dimensional objects after the dogs were trained on either two- or three-dimensional versions of the objects. Activation within reward processing regions and parietal cortex of the dog brain to 2D and 3D versions of objects was determined by their training experience, as dogs trained on one dimensionality showed greater differential activation within the dimension on which they were trained. These results show that dogs do not automatically generalize between two- and three-dimensional versions of object stimuli and suggest that future research consider the implicit assumptions when using pictures or videos.
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Affiliation(s)
- Ashley Prichard
- Psychology Department, Emory University, Atlanta, GA, 30322, USA
| | - Raveena Chhibber
- Psychology Department, Emory University, Atlanta, GA, 30322, USA
| | | | - Veronica Chiu
- Psychology Department, Emory University, Atlanta, GA, 30322, USA
| | - Mark Spivak
- Comprehensive Pet Therapy, Inc, Sandy Springs, GA, 30328, USA
| | - Gregory S Berns
- Psychology Department, Emory University, Atlanta, GA, 30322, USA.
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Nestmann S, Wiesen D, Karnath HO, Rennig J. Temporo-parietal brain regions are involved in higher order object perception. Neuroimage 2021; 234:117982. [PMID: 33757908 DOI: 10.1016/j.neuroimage.2021.117982] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/21/2020] [Revised: 02/26/2021] [Accepted: 03/13/2021] [Indexed: 10/21/2022] Open
Abstract
Lesions to posterior temporo-parietal brain regions are associated with deficits in perception of global, hierarchical shapes, but also with impairments in the processing of objects presented under demanding viewing conditions. Evidence from neuroimaging studies and lesion patterns observed in patients with simultanagnosia and agnosia for object orientation suggest similar brain regions to be involved in perception of global shapes and processing of objects in atypical ('non-canonical') orientation. In a localizer experiment, we identified individual temporo-parietal brain areas involved in global shape perception and found significantly higher BOLD signals during the processing of non-canonical compared to canonical objects. In a multivariate approach, we demonstrated that posterior temporo-parietal brain areas show distinct voxel patterns for non-canonical and canonical objects and that voxel patterns of global shapes are more similar to those of objects in non-canonical compared to canonical viewing conditions. These results suggest that temporo-parietal brain areas are not only involved in global shape perception but might serve a more general mechanism of complex object perception. Our results challenge a strict attribution of object processing to the ventral visual stream by suggesting specific dorsal contributions in more demanding viewing conditions.
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Affiliation(s)
- Sophia Nestmann
- Division of Neuropsychology, Center of Neurology, Hertie-Institute for Clinical Brain Research, University of Tübingen, D-72076 Tübingen, Germany
| | - Daniel Wiesen
- Division of Neuropsychology, Center of Neurology, Hertie-Institute for Clinical Brain Research, University of Tübingen, D-72076 Tübingen, Germany
| | - Hans-Otto Karnath
- Division of Neuropsychology, Center of Neurology, Hertie-Institute for Clinical Brain Research, University of Tübingen, D-72076 Tübingen, Germany; Department of Psychology, University of South Carolina, Columbia, USA.
| | - Johannes Rennig
- Division of Neuropsychology, Center of Neurology, Hertie-Institute for Clinical Brain Research, University of Tübingen, D-72076 Tübingen, Germany; Department of Neurosurgery and Core for Advanced MRI, Baylor College of Medicine, Houston, TX, USA
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14
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Basso MA, Frey S, Guerriero KA, Jarraya B, Kastner S, Koyano KW, Leopold DA, Murphy K, Poirier C, Pope W, Silva AC, Tansey G, Uhrig L. Using non-invasive neuroimaging to enhance the care, well-being and experimental outcomes of laboratory non-human primates (monkeys). Neuroimage 2021; 228:117667. [PMID: 33359353 PMCID: PMC8005297 DOI: 10.1016/j.neuroimage.2020.117667] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/03/2020] [Revised: 12/16/2020] [Accepted: 12/17/2020] [Indexed: 02/09/2023] Open
Abstract
Over the past 10-20 years, neuroscience witnessed an explosion in the use of non-invasive imaging methods, particularly magnetic resonance imaging (MRI), to study brain structure and function. Simultaneously, with access to MRI in many research institutions, MRI has become an indispensable tool for researchers and veterinarians to guide improvements in surgical procedures and implants and thus, experimental as well as clinical outcomes, given that access to MRI also allows for improved diagnosis and monitoring for brain disease. As part of the PRIMEatE Data Exchange, we gathered expert scientists, veterinarians, and clinicians who treat humans, to provide an overview of the use of non-invasive imaging tools, primarily MRI, to enhance experimental and welfare outcomes for laboratory non-human primates engaged in neuroscientific experiments. We aimed to provide guidance for other researchers, scientists and veterinarians in the use of this powerful imaging technology as well as to foster a larger conversation and community of scientists and veterinarians with a shared goal of improving the well-being and experimental outcomes for laboratory animals.
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Affiliation(s)
- M A Basso
- Fuster Laboratory of Cognitive Neuroscience, Department of Psychiatry and Biobehavioral Sciences UCLA Los Angeles CA 90095 USA
| | - S Frey
- Rogue Research, Inc. Montreal, QC, Canada
| | - K A Guerriero
- Washington National Primate Research Center University of Washington Seattle, WA USA
| | - B Jarraya
- Cognitive Neuroimaging Unit, INSERM, CEA, NeuroSpin center, 91191 Gif/Yvette, France; Université Paris-Saclay, UVSQ, Foch hospital, Paris, France
| | - S Kastner
- Princeton Neuroscience Institute & Department of Psychology Princeton University Princeton, NJ USA
| | - K W Koyano
- National Institute of Mental Health NIH Bethesda MD 20892 USA
| | - D A Leopold
- National Institute of Mental Health NIH Bethesda MD 20892 USA
| | - K Murphy
- Biosciences Institute and Centre for Behaviour and Evolution, Faculty of Medical Sciences Newcastle University Newcastle upon Tyne NE2 4HH United Kingdom UK
| | - C Poirier
- Biosciences Institute and Centre for Behaviour and Evolution, Faculty of Medical Sciences Newcastle University Newcastle upon Tyne NE2 4HH United Kingdom UK
| | - W Pope
- Department of Radiology UCLA Los Angeles, CA 90095 USA
| | - A C Silva
- Department of Neurobiology University of Pittsburgh, Pittsburgh PA 15261 USA
| | - G Tansey
- National Eye Institute NIH Bethesda MD 20892 USA
| | - L Uhrig
- Cognitive Neuroimaging Unit, INSERM, CEA, NeuroSpin center, 91191 Gif/Yvette, France
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15
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Yoshioka TW, Doi T, Abdolrahmani M, Fujita I. Specialized contributions of mid-tier stages of dorsal and ventral pathways to stereoscopic processing in macaque. eLife 2021; 10:58749. [PMID: 33625356 PMCID: PMC7959693 DOI: 10.7554/elife.58749] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/09/2020] [Accepted: 02/18/2021] [Indexed: 11/22/2022] Open
Abstract
The division of labor between the dorsal and ventral visual pathways has been well studied, but not often with direct comparison at the single-neuron resolution with matched stimuli. Here we directly compared how single neurons in MT and V4, mid-tier areas of the two pathways, process binocular disparity, a powerful cue for 3D perception and actions. We found that MT neurons transmitted disparity signals more quickly and robustly, whereas V4 or its upstream neurons transformed the signals into sophisticated representations more prominently. Therefore, signaling speed and robustness were traded for transformation between the dorsal and ventral pathways. The key factor in this tradeoff was disparity-tuning shape: V4 neurons had more even-symmetric tuning than MT neurons. Moreover, the tuning symmetry predicted the degree of signal transformation across neurons similarly within each area, implying a general role of tuning symmetry in the stereoscopic processing by the two pathways.
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Affiliation(s)
- Toshihide W Yoshioka
- Laboratory for Cognitive Neuroscience, Graduate School of Frontier Biosciences, Osaka University, SuitaOsaka, Japan.,Center for Information and Neural Networks, Osaka University and National Institute of Information and Communications Technology, SuitaOsaka, Japan
| | - Takahiro Doi
- Department of Psychology, University of Pennsylvania, Philadelphia, United States
| | - Mohammad Abdolrahmani
- Laboratory for Neural Circuits and Behavior, RIKEN Center for Brain Science (CBS), Wako, Japan
| | - Ichiro Fujita
- Laboratory for Cognitive Neuroscience, Graduate School of Frontier Biosciences, Osaka University, SuitaOsaka, Japan.,Center for Information and Neural Networks, Osaka University and National Institute of Information and Communications Technology, SuitaOsaka, Japan
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16
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A goal-driven modular neural network predicts parietofrontal neural dynamics during grasping. Proc Natl Acad Sci U S A 2020; 117:32124-32135. [PMID: 33257539 DOI: 10.1073/pnas.2005087117] [Citation(s) in RCA: 29] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
One of the primary ways we interact with the world is using our hands. In macaques, the circuit spanning the anterior intraparietal area, the hand area of the ventral premotor cortex, and the primary motor cortex is necessary for transforming visual information into grasping movements. However, no comprehensive model exists that links all steps of processing from vision to action. We hypothesized that a recurrent neural network mimicking the modular structure of the anatomical circuit and trained to use visual features of objects to generate the required muscle dynamics used by primates to grasp objects would give insight into the computations of the grasping circuit. Internal activity of modular networks trained with these constraints strongly resembled neural activity recorded from the grasping circuit during grasping and paralleled the similarities between brain regions. Network activity during the different phases of the task could be explained by linear dynamics for maintaining a distributed movement plan across the network in the absence of visual stimulus and then generating the required muscle kinematics based on these initial conditions in a module-specific way. These modular models also outperformed alternative models at explaining neural data, despite the absence of neural data during training, suggesting that the inputs, outputs, and architectural constraints imposed were sufficient for recapitulating processing in the grasping circuit. Finally, targeted lesioning of modules produced deficits similar to those observed in lesion studies of the grasping circuit, providing a potential model for how brain regions may coordinate during the visually guided grasping of objects.
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17
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Srinath R, Emonds A, Wang Q, Lempel AA, Dunn-Weiss E, Connor CE, Nielsen KJ. Early Emergence of Solid Shape Coding in Natural and Deep Network Vision. Curr Biol 2020; 31:51-65.e5. [PMID: 33096039 DOI: 10.1016/j.cub.2020.09.076] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/12/2020] [Revised: 08/24/2020] [Accepted: 09/25/2020] [Indexed: 10/23/2022]
Abstract
Area V4 is the first object-specific processing stage in the ventral visual pathway, just as area MT is the first motion-specific processing stage in the dorsal pathway. For almost 50 years, coding of object shape in V4 has been studied and conceived in terms of flat pattern processing, given its early position in the transformation of 2D visual images. Here, however, in awake monkey recording experiments, we found that roughly half of V4 neurons are more tuned and responsive to solid, 3D shape-in-depth, as conveyed by shading, specularity, reflection, refraction, or disparity cues in images. Using 2-photon functional microscopy, we found that flat- and solid-preferring neurons were segregated into separate modules across the surface of area V4. These findings should impact early shape-processing theories and models, which have focused on 2D pattern processing. In fact, our analyses of early object processing in AlexNet, a standard visual deep network, revealed a similar distribution of sensitivities to flat and solid shape in layer 3. Early processing of solid shape, in parallel with flat shape, could represent a computational advantage discovered by both primate brain evolution and deep-network training.
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Affiliation(s)
- Ramanujan Srinath
- Zanvyl Krieger Mind/Brain Institute, Johns Hopkins University, Baltimore, MD 21218, USA; Solomon H. Snyder Department of Neuroscience, Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA
| | - Alexandriya Emonds
- Zanvyl Krieger Mind/Brain Institute, Johns Hopkins University, Baltimore, MD 21218, USA; Department of Biomedical Engineering, Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA
| | - Qingyang Wang
- Zanvyl Krieger Mind/Brain Institute, Johns Hopkins University, Baltimore, MD 21218, USA; Solomon H. Snyder Department of Neuroscience, Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA
| | - Augusto A Lempel
- Zanvyl Krieger Mind/Brain Institute, Johns Hopkins University, Baltimore, MD 21218, USA; Solomon H. Snyder Department of Neuroscience, Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA
| | - Erika Dunn-Weiss
- Zanvyl Krieger Mind/Brain Institute, Johns Hopkins University, Baltimore, MD 21218, USA; Solomon H. Snyder Department of Neuroscience, Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA
| | - Charles E Connor
- Zanvyl Krieger Mind/Brain Institute, Johns Hopkins University, Baltimore, MD 21218, USA; Solomon H. Snyder Department of Neuroscience, Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA.
| | - Kristina J Nielsen
- Zanvyl Krieger Mind/Brain Institute, Johns Hopkins University, Baltimore, MD 21218, USA; Solomon H. Snyder Department of Neuroscience, Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA.
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18
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Effective Connectivity Reveals an Interconnected Inferotemporal Network for Three-Dimensional Structure Processing. J Neurosci 2020; 40:8501-8512. [PMID: 33028641 DOI: 10.1523/jneurosci.3024-19.2020] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/22/2019] [Revised: 09/15/2020] [Accepted: 09/22/2020] [Indexed: 11/21/2022] Open
Abstract
Disparity-defined 3D shape is processed in both the ventral and the dorsal visual stream. The network of cortical areas that is activated during the processing of disparity-defined 3D shape includes, in addition to parietal and premotor areas, three clearly distinct regions in inferotemporal cortex (ITC). To investigate the connectivity of the latter regions, we combined electrical stimulation with fMRI in male macaque monkeys. Electrical stimulation of each of the 3D-structure nodes in ITC mainly elicited increased fMRI activations in the other 3D-structure nodes and more variably in other parts of ventral visual cortex. Importantly, no increased activation was found in parietal areas, nor in PFC, whereas microstimulation in posterior parietal cortex did activate the ITC. Our results indicate that 3D-structure nodes in ITC form a strongly interconnected network, receiving input from parietal areas implicated in 3D-structure processing.SIGNIFICANCE STATEMENT Previous studies combining electrical microstimulation with functional imaging showed an interconnected set of regions in the ventral stream processing faces or bodies, but is has been unclear whether the same is true for other visual categories. Here the authors show that there is a connected system of stereo-selective regions in inferotemporal cortex, receiving input from parietal areas in the dorsal stream.
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19
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The Topography of Visually Guided Grasping in the Premotor Cortex: A Dense-Transcranial Magnetic Stimulation (TMS) Mapping Study. J Neurosci 2020; 40:6790-6800. [PMID: 32709693 DOI: 10.1523/jneurosci.0560-20.2020] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/09/2020] [Revised: 06/30/2020] [Accepted: 07/03/2020] [Indexed: 11/21/2022] Open
Abstract
Visuomotor transformations at the cortical level occur along a network where posterior parietal regions are connected to homologous premotor regions. Grasping-related activity is represented in a diffuse, ventral and dorsal system in the posterior parietal regions, but no systematic causal description of a premotor counterpart of a similar diffuse grasping representation is available. To fill this gap, we measured the kinematics of right finger movements in 17 male and female human participants during grasping of three objects of different sizes. Single-pulse transcranial magnetic stimulation was applied 100 ms after visual presentation of the object over a regular grid of 8 spots covering the left premotor cortex (PMC) and 2 Sham stimulations. Maximum finger aperture during reach was used as the feature to classify object size in different types of classifiers. Classification accuracy was taken as a measure of the efficiency of visuomotor transformations for grasping. Results showed that transcranial magnetic stimulation reduced classification accuracy compared with Sham stimulation when it was applied to 2 spots in the ventral PMC and 1 spot in the medial PMC, corresponding approximately to the ventral PMC and the dorsal portion of the supplementary motor area. Our results indicate a multifocal representation of object geometry for grasping in the PMC that matches the known multifocal parietal maps of grasping representations. Additionally, we confirm that, by applying a uniform spatial sampling procedure, transcranial magnetic stimulation can produce cortical functional maps independent of a priori spatial assumptions.SIGNIFICANCE STATEMENT Visually guided actions activate a large frontoparietal network. Here, we used a dense grid of transcranial magnetic stimulation spots covering the whole premotor cortex (PMC), to identify with accurate spatial mapping the functional specialization of the human PMC during grasping movement. Results corroborate previous findings about the role of the ventral PMC in preshaping the fingers according to the size of the target. Crucially, we found that the medial part of PMC, putatively covering the supplementary motor area, plays a direct role in object grasping. In concert with findings in nonhuman primates, these results indicate a multifocal representation of object geometry for grasping in the PMC and expand our understanding of how our brain integrates visual and motor information to perform visually guided actions.
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20
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Brasó-Vives M, Povolotskaya IS, Hartasánchez DA, Farré X, Fernandez-Callejo M, Raveendran M, Harris RA, Rosene DL, Lorente-Galdos B, Navarro A, Marques-Bonet T, Rogers J, Juan D. Copy number variants and fixed duplications among 198 rhesus macaques (Macaca mulatta). PLoS Genet 2020; 16:e1008742. [PMID: 32392208 PMCID: PMC7241854 DOI: 10.1371/journal.pgen.1008742] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/16/2019] [Revised: 05/21/2020] [Accepted: 03/27/2020] [Indexed: 01/01/2023] Open
Abstract
The rhesus macaque is an abundant species of Old World monkeys and a valuable model organism for biomedical research due to its close phylogenetic relationship to humans. Copy number variation is one of the main sources of genomic diversity within and between species and a widely recognized cause of inter-individual differences in disease risk. However, copy number differences among rhesus macaques and between the human and macaque genomes, as well as the relevance of this diversity to research involving this nonhuman primate, remain understudied. Here we present a high-resolution map of sequence copy number for the rhesus macaque genome constructed from a dataset of 198 individuals. Our results show that about one-eighth of the rhesus macaque reference genome is composed of recently duplicated regions, either copy number variable regions or fixed duplications. Comparison with human genomic copy number maps based on previously published data shows that, despite overall similarities in the genome-wide distribution of these regions, there are specific differences at the chromosome level. Some of these create differences in the copy number profile between human disease genes and their rhesus macaque orthologs. Our results highlight the importance of addressing the number of copies of target genes in the design of experiments and cautions against human-centered assumptions in research conducted with model organisms. Overall, we present a genome-wide copy number map from a large sample of rhesus macaque individuals representing an important novel contribution concerning the evolution of copy number in primate genomes.
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Affiliation(s)
- Marina Brasó-Vives
- Institut de Biologia Evolutiva (CSIC-Universitat Pompeu Fabra), Parc de Recerca Biomèdica de Barcelona, Barcelona, Catalonia, Spain
- Laboratoire de Biométrie et Biologie Évolutive UMR 5558, Université de Lyon, Université Lyon 1, CNRS, Villeurbanne, France
| | - Inna S. Povolotskaya
- Veltischev Research and Clinical Institute for Pediatrics of the Pirogov Russian National Research Medical University, Moscow, Russia
| | - Diego A. Hartasánchez
- Institut de Biologia Evolutiva (CSIC-Universitat Pompeu Fabra), Parc de Recerca Biomèdica de Barcelona, Barcelona, Catalonia, Spain
| | - Xavier Farré
- Institut de Biologia Evolutiva (CSIC-Universitat Pompeu Fabra), Parc de Recerca Biomèdica de Barcelona, Barcelona, Catalonia, Spain
| | - Marcos Fernandez-Callejo
- National Centre for Genomic Analysis-Centre for Genomic Regulation, Barcelona Institute of Science and Technology, Barcelona, Catalonia, Spain
| | - Muthuswamy Raveendran
- Human Genome Sequencing Center, Baylor College of Medicine, Houston, Texas, United States of America
- Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas, United States of America
| | - R. Alan Harris
- Human Genome Sequencing Center, Baylor College of Medicine, Houston, Texas, United States of America
- Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas, United States of America
| | - Douglas L. Rosene
- Department of Anatomy and Neurobiology, Boston University School of Medicine, Boston, Massachusetts, United States of America
| | - Belen Lorente-Galdos
- Department of Neuroscience, Yale School of Medicine, New Haven, Connecticut, United States of America
| | - Arcadi Navarro
- Institut de Biologia Evolutiva (CSIC-Universitat Pompeu Fabra), Parc de Recerca Biomèdica de Barcelona, Barcelona, Catalonia, Spain
- National Institute for Bioinformatics (INB), Barcelona, Catalonia, Spain
- Institució Catalana de Recerca i Estudis Avançats, Barcelona, Catalonia, Spain
| | - Tomas Marques-Bonet
- Institut de Biologia Evolutiva (CSIC-Universitat Pompeu Fabra), Parc de Recerca Biomèdica de Barcelona, Barcelona, Catalonia, Spain
- National Centre for Genomic Analysis-Centre for Genomic Regulation, Barcelona Institute of Science and Technology, Barcelona, Catalonia, Spain
- Institució Catalana de Recerca i Estudis Avançats, Barcelona, Catalonia, Spain
- Institut Català de Paleontologia Miquel Crusafont, Universitat Autònoma de Barcelona, Cerdanyola del Vallès, Catalonia, Spain
| | - Jeffrey Rogers
- Human Genome Sequencing Center, Baylor College of Medicine, Houston, Texas, United States of America
- Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas, United States of America
| | - David Juan
- Institut de Biologia Evolutiva (CSIC-Universitat Pompeu Fabra), Parc de Recerca Biomèdica de Barcelona, Barcelona, Catalonia, Spain
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21
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Lambert AJ, Ryckman N, Bandzo M. Testing the unified model of vision and attention: Effects of landmark features, stimulus identity and visual eccentricity on visual orienting and conscious discrimination. VISUAL COGNITION 2020. [DOI: 10.1080/13506285.2020.1717707] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
Affiliation(s)
- Anthony J. Lambert
- Centre for Brain Research and School of Psychology, University of Auckland, Auckland, New Zealand
| | - Nathan Ryckman
- Centre for Brain Research and School of Psychology, University of Auckland, Auckland, New Zealand
| | - Martina Bandzo
- Centre for Brain Research and School of Psychology, University of Auckland, Auckland, New Zealand
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22
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Decramer T, Premereur E, Lagae L, van Loon J, Janssen P, Sunaert S, Theys T. Patient MW: transient visual hemi-agnosia. J Neurol 2019; 266:691-698. [DOI: 10.1007/s00415-019-09188-1] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/14/2018] [Revised: 12/21/2018] [Accepted: 01/03/2019] [Indexed: 02/05/2023]
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23
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Alizadeh AM, Van Dromme IC, Janssen P. Single-cell responses to three-dimensional structure in a functionally defined patch in macaque area TEO. J Neurophysiol 2018; 120:2806-2818. [PMID: 30230993 DOI: 10.1152/jn.00198.2018] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022] Open
Abstract
Both dorsal and ventral visual pathways harbor several areas sensitive to gradients of binocular disparity (i.e., higher-order disparity). Although a wealth of information exists about disparity processing in early visual (V1, V2, and V3) and end-stage areas, TE in the ventral stream, and the anterior intraparietal area (AIP) in the dorsal stream, little is known about midlevel area TEO in the ventral pathway. We recorded single-unit responses to disparity-defined curved stimuli in a functional magnetic resonance imaging (fMRI) activation elicited by curved surfaces compared with flat surfaces in the macaque area TEO. This fMRI activation contained a small proportion of disparity-selective neurons, with very few of them second-order disparity selective. Overall, this population of TEO neurons did not preserve its three-dimensional structure selectivity across positions in depth, indicating a lack of higher-order disparity selectivity, but showed stronger responses to flat surfaces than to curved surfaces, as predicted by the fMRI experiment. The receptive fields of the responsive TEO cells were relatively small and generally foveal. A linear support vector machine classifier showed that this population of disparity-selective TEO neurons contains reliable information about the sign of curvature and the position in depth of the stimulus. NEW & NOTEWORTHY We recorded in a part of the macaque area TEO that is activated more by curved surfaces than by flat surfaces at different disparities using the same stimuli. In contrast to previous studies, this functional magnetic resonance imaging-defined patch did not contain a large number of higher-order disparity-selective neurons. However, a linear support vector machine could reliably classify both the sign of the disparity gradient and the position in depth of the stimuli.
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Affiliation(s)
- Amir-Mohammad Alizadeh
- Department of Neuroscience, Research Group Neurophysiology, The Leuven Brain Institute , Leuven , Belgium
| | - Ilse C Van Dromme
- Department of Neuroscience, Research Group Neurophysiology, The Leuven Brain Institute , Leuven , Belgium
| | - Peter Janssen
- Department of Neuroscience, Research Group Neurophysiology, The Leuven Brain Institute , Leuven , Belgium
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24
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Wang M, Dong G, Wang L, Zheng H, Potenza MN. Brain responses during strategic online gaming of varying proficiencies: Implications for better gaming. Brain Behav 2018; 8:e01076. [PMID: 30020566 PMCID: PMC6085917 DOI: 10.1002/brb3.1076] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 03/13/2018] [Revised: 06/21/2018] [Accepted: 06/25/2018] [Indexed: 01/24/2023] Open
Abstract
BACKGROUND Online gaming is a complex and competitive activity. However, little attention has been paid to brain activities relating to gaming proficiency. METHODS In the current study, fMRI data were obtained from 70 subjects while they were playing online games. Based on their playing, we selected 24 clips from each subject for three levels of gaming proficiency (good, poor, and average), with each clip lasting for 8 seconds. RESULTS When comparing the brain responses during the three conditions, good-play trials, relative to poor- or average-play trials, were associated with greater activation of the declive, postcentral gyrus, and striatum. In post-hoc analyses taking the identified clusters as regions of interest to calculate their functional connectivity, activation of the declive during good-play conditions was associated with that in the precentral gyrus and thalamus, and activation in the striatum was associated with that in the inferior frontal gyrus and middle frontal cortex. CONCLUSIONS Taken together, findings suggest specific regional brain activations and functional connectivity patterns involving brain regions and circuits involved in sensory, motor, automatic and executive functioning and their coordination are associated with better gaming. Specifically, for basic functions, such as simple reaction, motor control, and motor coordination, people need to perform them automatically; for highly cognitive functions, such as plan and strategic playing, people need to engage more executive functions in finishing these works. The automatically processed basic functions spare cognitive resources for the highly cognitive functions, which facilitates their gaming behaviors.
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Affiliation(s)
- Min Wang
- Department of Psychology, Zhejiang Normal University, Jinhua, China
| | - Guangheng Dong
- Department of Psychology, Zhejiang Normal University, Jinhua, China.,Institute of Psychological and Brain Sciences, Zhejiang Normal University, Jinhua, China
| | - Lingxiao Wang
- CAS Key Laboratory of Behavioral Science, Institute of Psychology, Beijing, China
| | - Hui Zheng
- Department of Psychology, Zhejiang Normal University, Jinhua, China
| | - Marc N Potenza
- Department of Psychiatry, Department of Neurobiology, Child Study Center, and National Center on Addiction and Substance Abuse, Yale University School of Medicine, New Haven, Connecticut.,Connecticut Mental Health Center, New Haven, Connecticut
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25
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Xu Y. A Tale of Two Visual Systems: Invariant and Adaptive Visual Information Representations in the Primate Brain. Annu Rev Vis Sci 2018; 4:311-336. [PMID: 29949722 DOI: 10.1146/annurev-vision-091517-033954] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Abstract
Visual information processing contains two opposite needs. There is both a need to comprehend the richness of the visual world and a need to extract only pertinent visual information to guide thoughts and behavior at a given moment. I argue that these two aspects of visual processing are mediated by two complementary visual systems in the primate brain-specifically, the occipitotemporal cortex (OTC) and the posterior parietal cortex (PPC). The role of OTC in visual processing has been documented extensively by decades of neuroscience research. I review here recent evidence from human imaging and monkey neurophysiology studies to highlight the role of PPC in adaptive visual processing. I first document the diverse array of visual representations found in PPC. I then describe the adaptive nature of visual representation in PPC by contrasting visual processing in OTC and PPC and by showing that visual representations in PPC largely originate from OTC.
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Affiliation(s)
- Yaoda Xu
- Visual Sciences Laboratory, Psychology Department, Harvard University, Cambridge, Massachusetts 02138, USA;
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26
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Erlikhman G, Caplovitz GP, Gurariy G, Medina J, Snow JC. Towards a unified perspective of object shape and motion processing in human dorsal cortex. Conscious Cogn 2018; 64:106-120. [PMID: 29779844 DOI: 10.1016/j.concog.2018.04.016] [Citation(s) in RCA: 25] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/06/2018] [Revised: 04/20/2018] [Accepted: 04/26/2018] [Indexed: 01/06/2023]
Abstract
Although object-related areas were discovered in human parietal cortex a decade ago, surprisingly little is known about the nature and purpose of these representations, and how they differ from those in the ventral processing stream. In this article, we review evidence for the unique contribution of object areas of dorsal cortex to three-dimensional (3-D) shape representation, the localization of objects in space, and in guiding reaching and grasping actions. We also highlight the role of dorsal cortex in form-motion interaction and spatiotemporal integration, possible functional relationships between 3-D shape and motion processing, and how these processes operate together in the service of supporting goal-directed actions with objects. Fundamental differences between the nature of object representations in the dorsal versus ventral processing streams are considered, with an emphasis on how and why dorsal cortex supports veridical (rather than invariant) representations of objects to guide goal-directed hand actions in dynamic visual environments.
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Affiliation(s)
| | | | - Gennadiy Gurariy
- Department of Psychology, University of Nevada, Reno, USA; Department of Psychology, University of Wisconsin, Milwaukee, USA
| | - Jared Medina
- Department of Psychological and Brain Sciences, University of Delaware, USA
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Freud E, Robinson AK, Behrmann M. More than Action: The Dorsal Pathway Contributes to the Perception of 3-D Structure. J Cogn Neurosci 2018; 30:1047-1058. [PMID: 29561234 DOI: 10.1162/jocn_a_01262] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/04/2022]
Abstract
An evolving view in cognitive neuroscience is that the dorsal visual pathway not only plays a key role in visuomotor behavior but that it also contributes functionally to the recognition of objects. To characterize the nature of the object representations derived by the dorsal pathway, we assessed perceptual performance in the context of the continuous flash suppression paradigm, which suppresses object processing in the ventral pathway while sparing computation in the dorsal pathway. In a series of experiments, prime stimuli, which were rendered imperceptible by the continuous flash suppression, still contributed to perceptual decisions related to the subsequent perceptible target stimuli. However, the contribution of the prime to perception was contingent on the prime's structural coherence, in that a perceptual advantage was observed only for targets primed by objects with legitimate 3-D structure. Finally, we obtained additional evidence to demonstrate that the processing of the suppressed objects was contingent on the magnocellular, rather than the parvocellular, system, further linking the processing of the suppressed stimuli to the dorsal pathway. Together, these results provide novel evidence that the dorsal pathway does not only support visuomotor control but, rather, that it also derives the structural description of 3-D objects and contributes to shape perception.
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28
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Two visual pathways – Where have they taken us and where will they lead in future? Cortex 2018; 98:283-292. [DOI: 10.1016/j.cortex.2017.12.002] [Citation(s) in RCA: 43] [Impact Index Per Article: 7.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/13/2017] [Accepted: 12/05/2017] [Indexed: 01/05/2023]
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29
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de Haan EH, Jackson SR, Schenk T. Where are we now with ‘What’ and ‘How’? Cortex 2018; 98:1-7. [DOI: 10.1016/j.cortex.2017.12.001] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/29/2017] [Revised: 12/04/2017] [Accepted: 12/05/2017] [Indexed: 01/02/2023]
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