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Kraevaya OA, Bolshakova VS, Slita AV, Esaulkova IL, Zhilenkov AV, Mikhalsky MG, Sinegubova EO, Voronov II, Peregudov AS, Shestakov AF, Zarubaev VV, Troshin PA. Buckyballs to fight pandemic: Water-soluble fullerene derivatives with pendant carboxylic groups emerge as a new family of promising SARS-CoV-2 inhibitors. Bioorg Chem 2025; 154:108097. [PMID: 39729769 DOI: 10.1016/j.bioorg.2024.108097] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/21/2024] [Revised: 12/19/2024] [Accepted: 12/22/2024] [Indexed: 12/29/2024]
Abstract
Herein, we present the first experimental study of individual water-soluble fullerene derivatives proving their ability to inhibit SARS-CoV-2 in vitro. The initial screening allowed us to identify a few new compounds that have demonstrated pronounced antiviral activity with IC50 values as low as 390 nM and selectivity indexes reaching 214. Time-of-addition analysis and molecular docking results suggested that the viral protease and/or the spike protein are the most probable targets inhibited by the fullerene derivatives. Further rational design of fullerene derivatives might lead to the development of compounds with further enhanced antiviral activity and decreased toxicity.
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Affiliation(s)
- Olga A Kraevaya
- Federal Research Center for Problems of Chemical Physics and Medicinal Chemistry of RAS, Semenov Prospect 1, Chernogolovka 142432, Russia.
| | - Valeriya S Bolshakova
- Federal Research Center for Problems of Chemical Physics and Medicinal Chemistry of RAS, Semenov Prospect 1, Chernogolovka 142432, Russia
| | - Alexander V Slita
- St. Petersburg Pasteur Institute, Mira st. 14, St. Petersburg 197101, Russia
| | - Iana L Esaulkova
- St. Petersburg Pasteur Institute, Mira st. 14, St. Petersburg 197101, Russia
| | - Alexander V Zhilenkov
- Federal Research Center for Problems of Chemical Physics and Medicinal Chemistry of RAS, Semenov Prospect 1, Chernogolovka 142432, Russia
| | - Mikhail G Mikhalsky
- St. Petersburg Pasteur Institute, Mira st. 14, St. Petersburg 197101, Russia
| | | | - Ilya I Voronov
- Federal Research Center for Problems of Chemical Physics and Medicinal Chemistry of RAS, Semenov Prospect 1, Chernogolovka 142432, Russia
| | - Alexander S Peregudov
- A.N. Nesmeyanov Institute of Organoelement Compounds of RAS, Vavylova St. 28, B- 334, Moscow 119991, Russia
| | - Alexander F Shestakov
- Federal Research Center for Problems of Chemical Physics and Medicinal Chemistry of RAS, Semenov Prospect 1, Chernogolovka 142432, Russia; Department of Fundamental Physics & Chemical Engineering, M.V. Lomonosov Moscow State University, Leninskie Gory 1/51, Moscow 119991, Russia
| | - Vladimir V Zarubaev
- St. Petersburg Pasteur Institute, Mira st. 14, St. Petersburg 197101, Russia.
| | - Pavel A Troshin
- Federal Research Center for Problems of Chemical Physics and Medicinal Chemistry of RAS, Semenov Prospect 1, Chernogolovka 142432, Russia; Zhengzhou Research Institute of HIT, Longyuan East 7th 26, Jinshui District, Zhengzhou, Henan Province 450003, China.
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2
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Ayub MA, Tyagi AR, Srivastava SK, Singh P. Quantum DFT analysis and molecular docking investigation of various potential breast cancer drugs. J Mater Chem B 2024; 13:218-238. [PMID: 39545283 DOI: 10.1039/d4tb01803f] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2024]
Abstract
Breast cancer is among the deadliest cancers worldwide, highlighting the urgent need for effective treatments. This study employs density functional theory (DFT) and molecular docking analyses to evaluate the anti-cancer efficacy and specificity of drug molecules lapatinib, tucatinib, neratinib, anastrozole, and letrozole. DFT analysis provides comprehensive insights into the structural, electronic, optical, and vibrational properties of these drugs, helping to elucidate their molecular stability and reactivity through global reactivity descriptors. Additionally, molecular docking simulations reveal the binding conformations and interaction profiles of these drugs with key breast cancer targets, underscoring their therapeutic potential. Docking results indicate that lapatinib, tucatinib, and neratinib have high binding affinities for HER2, with lapatinib exhibiting the strongest overall binding, particularly with PDK1 (PDB ID: 1UU7), PAK4 (PDB ID: 2X4Z), GSK3 (PDB ID: 1GNG), and HER2 (PDB ID: 2IOK). The stable hydrogen bonding and other interactions observed with lapatinib support its effectiveness in treating HER2-positive breast cancers, tucatinib's selective HER2 binding reduces off-target effects, while neratinib's irreversible binding provides prolonged inhibition, making it useful for overcoming resistance in HER2-positive cases. In contrast, anastrozole and letrozole show lower binding affinities for HER2 and EGFR due to their simpler structures but are potent aromatase inhibitors, making them effective in treating estrogen receptor-positive (ER-positive) breast cancers. In conclusion, DFT and molecular docking studies affirm the suitability of lapatinib, tucatinib, and neratinib for HER2-positive cancers, while anastrozole and letrozole are effective in ER-positive cancers, emphasizing the role of molecular structure and binding affinity in optimizing cancer treatment strategies.
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Affiliation(s)
- Md Ashraf Ayub
- Department of Zoology, School of Life Sciences, Mahatma Gandhi Central University, Motihari-845401, Bihar, India.
| | - Ankit Raj Tyagi
- Department of Zoology, School of Life Sciences, Mahatma Gandhi Central University, Motihari-845401, Bihar, India.
| | - Sunil Kumar Srivastava
- Department of Physics, School of Physical Sciences, Mahatma Gandhi Central University, Motihari-845401, Bihar, India.
| | - Pranveer Singh
- Department of Zoology, School of Life Sciences, Mahatma Gandhi Central University, Motihari-845401, Bihar, India.
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3
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Singh VK, Thakur DC, Rajak N, Giri R, Garg N. Immunomodulatory potential of bioactive glycoside syringin: a network pharmacology and molecular modeling approach. J Biomol Struct Dyn 2024; 42:3906-3919. [PMID: 37243678 DOI: 10.1080/07391102.2023.2216299] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/15/2023] [Accepted: 05/15/2023] [Indexed: 05/29/2023]
Abstract
Many diseases, such as rheumatoid arthritis, neurodegenerative disease, lupus, autoimmune disease, and cancer, are described by chronic inflammation following tissue damage. Anti-inflammatory drugs like non-steroidal anti-inflammatory drugs and other steroids cause many side effects and generally need careful consideration and monitoring during usage. In recent years, a significant interest in plant-derived approaches has been warranted. The bioactive glycoside syringin might be one of the effective immunomodulatory agents. However, its immunomodulatory potential needs to be better known. In this study, we evaluated the immunomodulatory potential of syringin using network pharmacology, molecular docking, and molecular dynamics simulation-based approaches. First, we applied the GeneCards and OMIM databases to acquire the immunomodulatory agents. Then, the STRING database was utilized to get the hub genes. Interaction analysis and molecular docking described strong binding of the active site of immunomodulatory proteins with the bioactive syringin. Molecular dynamics simulations (200 ns) showed a very stable interaction of syringin with the immunomodulatory protein. Further, the optimized structure and molecular electrostatic potential of the syringin were calculated by a density-functional theory utilizing basis levels of B3LYP/6-31. Syringin investigated in this study holds the required drug-likeness characteristics and follows Lipinski's rule of five. However, quantum-chemical estimations show the syringin has potent reactivity, demonstrating a lower energy gap. Furthermore, the gap between ELUMO and EHOMO was low, suggesting the excellent affinity of syringin towards the immunomodulatory proteins. The present study shows that syringin might be an effective immunomodulatory agent and can be further explored using different experimental methods.Communicated by Ramaswamy H. Sarma.
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Affiliation(s)
- Vipendra Kumar Singh
- School of Biosciences and Bioengineering, Indian Institute of Technology Mandi, VPO Kamand, HP, India
| | - D C Thakur
- School of Biosciences and Bioengineering, Indian Institute of Technology Mandi, VPO Kamand, HP, India
| | - Naina Rajak
- Faculty of Ayurveda, Department of Medicinal Chemistry, Institute of Medical Sciences, Banaras Hindu University, Varanasi, India
| | - Rajanish Giri
- School of Biosciences and Bioengineering, Indian Institute of Technology Mandi, VPO Kamand, HP, India
| | - Neha Garg
- Faculty of Ayurveda, Department of Medicinal Chemistry, Institute of Medical Sciences, Banaras Hindu University, Varanasi, India
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4
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Malode SJ, Pandiaraj S, Alodhayb A, Shetti NP. Carbon Nanomaterials for Biomedical Applications: Progress and Outlook. ACS APPLIED BIO MATERIALS 2024; 7:752-777. [PMID: 38271214 DOI: 10.1021/acsabm.3c00983] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/27/2024]
Abstract
Recent developments in nanoscale materials have found extensive use in various fields, especially in the biomedical industry. Several substantial obstacles must be overcome, particularly those related to nanostructured materials in biomedicine, before they can be used in therapeutic applications. Significant concerns in biomedicine include biological processes, adaptability, toxic effects, and nano-biointerfacial properties. Biomedical researchers have difficulty choosing suitable materials for drug carriers, cancer treatment, and antiviral uses. Carbon nanomaterials are among the various nanoparticle forms that are continually receiving interest for biomedical applications. They are suitable materials owing to their distinctive physical and chemical properties, such as electrical, high-temperature, mechanical, and optical diversification. An individualized, controlled, dependable, low-carcinogenic, target-specific drug delivery system can diagnose and treat infections in biomedical applications. The variety of carbon materials at the nanoscale is remarkable. Allotropes and other forms of the same element, carbon, are represented in nanoscale dimensions. These show promise for a wide range of applications. Carbon nanostructured materials with exceptional mechanical, electrical, and thermal properties include graphene and carbon nanotubes. They can potentially revolutionize industries, including electronics, energy, and medicine. Ongoing investigation and expansion efforts continue to unlock possibilities for these materials, making them a key player in shaping the future of advanced technology. Carbon nanostructured materials explore the potential positive effects of reducing the greenhouse effect. The current state of nanostructured materials in the biomedical sector is covered in this review, along with their synthesis techniques and potential uses.
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Affiliation(s)
- Shweta J Malode
- Center for Energy and Environment, School of Advanced Sciences, KLE Technological University, Vidyanagar, Hubballi 580031, Karnataka, India
| | - Saravanan Pandiaraj
- Department of Self-Development Skills, King Saud University, Riyadh 11451, Saudi Arabia
| | - Abdullah Alodhayb
- Department of Physics and Astronomy, King Saud University, Riyadh 11451, Saudi Arabia
| | - Nagaraj P Shetti
- Center for Energy and Environment, School of Advanced Sciences, KLE Technological University, Vidyanagar, Hubballi 580031, Karnataka, India
- University Center for Research & Development (UCRD), Chandigarh University, Gharuan, Mohali 140413, Panjab, India
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Liu K, Guo F, Ma Y, Yu X, Fu X, Li W, Han W. Functionalized Fullerene Potentially Inhibits SARS-CoV-2 Infection by Modulating Spike Protein Conformational Changes. Int J Mol Sci 2023; 24:14471. [PMID: 37833919 PMCID: PMC10572755 DOI: 10.3390/ijms241914471] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/13/2023] [Revised: 09/18/2023] [Accepted: 09/20/2023] [Indexed: 10/15/2023] Open
Abstract
The disease of SARS-CoV-2 has caused considerable morbidity and mortality globally. Spike proteins on the surface of SARS-CoV-2 allow it to bind with human cells, leading to infection. Fullerenes and their derivatives are promising SARS-CoV-2 inhibitors and drug-delivery vehicles. In this study, Gaussian accelerated molecular dynamics simulations and the Markov state model were employed to delve into the inhibitory mechanism of Fullerene-linear-polyglycerol-b-amine sulfate (F-LGPS) on spike proteins. During the study, it was discovered that fullerene derivatives can operate at the interface of the receptor-binding domain (RBD) and the N-terminal domain (NTD), keeping structural domains in a downward conformation. It was also observed that F-LGPS demonstrated superior inhibitory effects on the XBB variant in comparison to the wild-type variant. This study yielded invaluable insights for the potential development of efficient therapeutics targeting the spike protein of SARS-CoV-2.
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Affiliation(s)
- Kaifeng Liu
- Key Laboratory for Molecular Enzymology and Engineering of Ministry of Education, School of Life Sciences, Jilin University, Changchun 130012, China; (K.L.); (Y.M.)
| | - Fangfang Guo
- Edmond H. Fischer Signal Transduction Laboratory, School of Life Sciences, Jilin University, Changchun 130012, China; (F.G.); (X.Y.); (X.F.)
| | - Yingying Ma
- Key Laboratory for Molecular Enzymology and Engineering of Ministry of Education, School of Life Sciences, Jilin University, Changchun 130012, China; (K.L.); (Y.M.)
| | - Xiangyu Yu
- Edmond H. Fischer Signal Transduction Laboratory, School of Life Sciences, Jilin University, Changchun 130012, China; (F.G.); (X.Y.); (X.F.)
| | - Xueqi Fu
- Edmond H. Fischer Signal Transduction Laboratory, School of Life Sciences, Jilin University, Changchun 130012, China; (F.G.); (X.Y.); (X.F.)
| | - Wannan Li
- Edmond H. Fischer Signal Transduction Laboratory, School of Life Sciences, Jilin University, Changchun 130012, China; (F.G.); (X.Y.); (X.F.)
| | - Weiwei Han
- Key Laboratory for Molecular Enzymology and Engineering of Ministry of Education, School of Life Sciences, Jilin University, Changchun 130012, China; (K.L.); (Y.M.)
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6
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Saleh NA. In-silico study: docking simulation and molecular dynamics of peptidomimetic fullerene-based derivatives against SARS-CoV-2 M pro. 3 Biotech 2023; 13:185. [PMID: 37193325 PMCID: PMC10182551 DOI: 10.1007/s13205-023-03608-w] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/02/2022] [Accepted: 05/03/2023] [Indexed: 05/18/2023] Open
Abstract
COVID-19 is caused by severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2, has become a global pandemic resulting in significant morbidity and mortality. This study presents 12 new peptidomimetic fullerene-based derivatives in three groups that are investigated theoretically as SARS-CoV-2 Mpro inhibitors to increase the chance of treating COVID-19. Studied compounds are designed and optimized at B88-LYP/DZVP method. Molecular descriptors results show the stability and reactivity of the compounds with Mpro, especially in the 3rd group (Ser compounds). However, Lipinski's Rule of Five values indicates that the compounds are not suitable as oral drugs. Furthermore, molecular docking simulations are carried out to investigate the binding affinity and interaction modes of the top five compounds (compounds 1, 9, 11, 2, and 10) with the Mpro protein, which have the lowest binding energy. Molecular dynamics simulations are also performed to evaluate the stability of the protein-ligand complexes with compounds 1 and 9 and compare them with natural substrate interaction. The analysis of RMSD, H-bonds, Rg, and SASA indicates that both compounds 1 (Gly-α acid) and 9 (Ser-α acid) have good stability and strong binding affinity with the Mpro protein. However, compound 9 shows slightly better stability and binding affinity compared to compound 1.
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Affiliation(s)
- Noha A. Saleh
- Department of Physics, College of Science, Imam Abdulrahman Bin Faisal University, P.O. Box 1982, 31441 Dammam, Saudi Arabia
- Basic and Applied Scientific Research Centre, Imam Abdulrahman Bin Faisal University, P.O. Box 1982, 31441 Dammam, Saudi Arabia
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7
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Kekani LN, Witika BA. Current advances in nanodrug delivery systems for malaria prevention and treatment. DISCOVER NANO 2023; 18:66. [PMID: 37382765 PMCID: PMC10409709 DOI: 10.1186/s11671-023-03849-x] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/10/2023] [Accepted: 04/13/2023] [Indexed: 06/30/2023]
Abstract
Malaria is a life-threatening, blood-borne disease with over two hundred million cases throughout the world and is more prevalent in Sub-Saharan Africa than anywhere else in the world. Over the years, several treatment agents have been developed for malaria; however, most of these active pharmaceutical ingredients exhibit poor aqueous solubility and low bioavailability and may result in drug-resistant parasites, thus increasing malaria cases and eventually, deaths. Factors such as these in therapeutics have led to a better appreciation of nanomaterials. The ability of nanomaterials to function as drug carriers with a high loading capacity and targeted drug delivery, good biocompatibility, and low toxicity renders them an appealing alternative to conventional therapy. Nanomaterials such as dendrimers and liposomes have been demonstrated to be capable of enhancing the efficacy of antimalarial drugs. This review discusses the recent development of nanomaterials and their benefits in drug delivery for the potential treatment of malaria.
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Affiliation(s)
- Linda N Kekani
- Department of Pharmaceutical Sciences, School of Pharmacy, Sefako Makgatho Health Sciences University, Pretoria, 0208, South Africa
| | - Bwalya A Witika
- Department of Pharmaceutical Sciences, School of Pharmacy, Sefako Makgatho Health Sciences University, Pretoria, 0208, South Africa.
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8
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Hosseini SM, Mohammadnejad J, Najafi-Taher R, Zadeh ZB, Tanhaei M, Ramakrishna S. Multifunctional Carbon-Based Nanoparticles: Theranostic Applications in Cancer Therapy and Diagnosis. ACS APPLIED BIO MATERIALS 2023; 6:1323-1338. [PMID: 36921253 DOI: 10.1021/acsabm.2c01000] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/17/2023]
Abstract
Cancer diagnosis and treatment are the most critical challenges in modern medicine. Conventional cancer treatments no longer meet the needs of the health field due to the high rate of mutations and epigenetic factors that have caused drug resistance in tumor cells. Hence, the search for unique methods and factors is quickly expanding. The development of nanotechnology in medicine and the search for a system to integrate treatment and diagnosis to achieve an effective approach to overcome the known limitations of conventional treatment methods have led to the emergence of theranostic nanoparticles and nanosystems based on these nanoparticles. An influential group of these nanoparticles is carbon-based theranostic nanoparticles. These nanoparticles have received significant attention due to their unique properties, such as electrical conductivity, high strength, excellent surface chemistry, and wide range of structural diversity (graphene, nanodiamond, carbon quantum dots, fullerenes, carbon nanotubes, and carbon nanohorns). These nanoparticles were widely used in various fields, such as tissue engineering, drug delivery, imaging, and biosensors. In this review, we discuss in detail the recent features and advances in carbon-based theranostic nanoparticles and the advanced and diverse strategies used to treat diseases with these nanoparticles.
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Affiliation(s)
- Seyed Mohammad Hosseini
- Department of Life Science Engineering Faculty of Modern Science and Technology, Nano Biotechnology Group, University of Tehran, Tehran 1439957131, Iran
| | - Javad Mohammadnejad
- Department of Life Science Engineering Faculty of Modern Science and Technology, Nano Biotechnology Group, University of Tehran, Tehran 1439957131, Iran
| | - Roqya Najafi-Taher
- Department of Medical Nanotechnology, School of Advanced Technologies in Medicine, Tehran University of Medical Sciences, Tehran 11114115, Iran
| | - Zahra Beiram Zadeh
- Department of Civil & Environmental Engineering, National University of Singapore, 1 Engineering Drive 2, Singapore 117576, Singapore
| | - Mohammad Tanhaei
- Division of Physics and Applied Physics, School of Physical and Mathematical Sciences, Nanyang Technological University, 21 Nanyang Link, Singapore 637371, Singapore
| | - Seeram Ramakrishna
- Department of Mechanical Engineering, National University of Singapore, 9 Engineering Drive 1, Singapore 117576, Singapore
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9
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Sengupta J, Hussain CM. The Emergence of Carbon Nanomaterials as Effective Nano-Avenues to Fight against COVID-19. MATERIALS (BASEL, SWITZERLAND) 2023; 16:1068. [PMID: 36770075 PMCID: PMC9918919 DOI: 10.3390/ma16031068] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/08/2022] [Revised: 01/17/2023] [Accepted: 01/23/2023] [Indexed: 06/18/2023]
Abstract
COVID-19 (Coronavirus Disease 2019), a viral respiratory ailment that was first identified in Wuhan, China, in 2019, and then expanded globally, was caused by Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2). The severity of the illness necessitated quick action to cease the virus's spread. The best practices to avert the infection include early detection, the use of protective clothing, the consumption of antiviral medicines, and finally the immunization of the patients through vaccination. The family of carbon nanomaterials, which includes graphene, fullerene, carbon nanotube (CNT), and carbon dot (CD), has a great deal of potential to effectively contribute to each of the main trails in the battle against the coronavirus. Consequently, the recent advances in the application of carbon nanomaterials for containing and combating the SARS-CoV-2 virus are discussed herein, along with their associated challenges and futuristic applicability.
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Affiliation(s)
- Joydip Sengupta
- Department of Electronic Science, Jogesh Chandra Chaudhuri College, Kolkata 700033, India
| | - Chaudhery Mustansar Hussain
- Department of Chemistry and Environmental Science, New Jersey Institute of Technology, Newark, NJ 07102, USA
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10
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Zhang L, Zhang JC, Shi LF, Cheng X, Chen JH, Sun WM. On the possibility of using the Ti@Si 16 superatom as a novel drug delivery carrier for different drugs: A DFT study. J Mol Graph Model 2023; 118:108378. [PMID: 36423518 DOI: 10.1016/j.jmgm.2022.108378] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/28/2022] [Revised: 11/05/2022] [Accepted: 11/15/2022] [Indexed: 11/17/2022]
Abstract
The potential application of an experimentally synthesized superatom Ti@Si16 as a novel drug carrier for cisplatin (DDP), isoniazid (INH), acetylsalicylic acid (ASA), 5-fluorouracil (5-Fu), and favipiravir (FPV) has been explored by density functional theory. It is observed that the Pt atom of DDP can be effectively absorbed on Ti@Si16 via a "donation-back donation" electron transfer mechanism, resulting in a moderate adsorption energy of -19.95 kcal/mol for DDP@[Ti@Si16]. As for INH, it prefers to combine with Ti@Si16 via the N atom of pyridine ring by forming a strongly polar N-Si bond. Differently, the interaction between Ti@Si16 and the ASA, 5-Fu, and FPV drugs is dominated by the Van der Waals interaction. Our results reveal that DDP@[Ti@Si16] possesses a moderate recovery time under body temperature, which benefits the desorption of DDP from Ti@Si16. More importantly, the release of DDP drug from the Ti@Si16 surface can be effectively controlled by exerting small orientation external electric fields on the DDP@[Ti@Si16] complex. Therefore, this study demonstrates that Ti@Si16 can serve as a promising drug carrier for DDP, and thus will further expand its practical applications in the biomedical field.
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Affiliation(s)
- Li Zhang
- Fujian Key Laboratory of Drug Target Discovery and Structural and Functional Research, The School of Pharmacy, Fujian Medical University, Fuzhou, 350108, PR China; Department of Pharmacy, Sanming First Hospital, Affiliated Hospital of Fujian Medical University, Sanming, 365000, Fujian Province, PR China
| | - Jia-Chen Zhang
- Fujian Key Laboratory of Drug Target Discovery and Structural and Functional Research, The School of Pharmacy, Fujian Medical University, Fuzhou, 350108, PR China
| | - Ling-Fei Shi
- Fujian Key Laboratory of Drug Target Discovery and Structural and Functional Research, The School of Pharmacy, Fujian Medical University, Fuzhou, 350108, PR China
| | - Xin Cheng
- Fujian Key Laboratory of Drug Target Discovery and Structural and Functional Research, The School of Pharmacy, Fujian Medical University, Fuzhou, 350108, PR China
| | - Jing-Hua Chen
- Fujian Key Laboratory of Drug Target Discovery and Structural and Functional Research, The School of Pharmacy, Fujian Medical University, Fuzhou, 350108, PR China.
| | - Wei-Ming Sun
- Fujian Key Laboratory of Drug Target Discovery and Structural and Functional Research, The School of Pharmacy, Fujian Medical University, Fuzhou, 350108, PR China; School of Chemistry and Materials Science, University of Science and Technology of China, Hefei, Anhui, 230026, PR China.
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11
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North SC, Jorgensen KR, Pricetolstoy J, Wilson AK. Population analysis and the effects of Gaussian basis set quality and quantum mechanical approach: main group through heavy element species. Front Chem 2023; 11:1152500. [PMID: 37153525 PMCID: PMC10154537 DOI: 10.3389/fchem.2023.1152500] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/27/2023] [Accepted: 04/03/2023] [Indexed: 05/09/2023] Open
Abstract
Atomic charge and its distribution across molecules provide important insight into chemical behavior. Though there are many studies on various routes for the determination of atomic charge, there are few studies that examine the broader impact of basis set and quantum method used over many types of population analysis methods across the periodic table. Largely, such a study of population analysis has focused on main-group species. In this work, atomic charges were calculated using several population analysis methods including orbital-based methods (Mulliken, Löwdin, and Natural Population Analysis), volume-based methods (Atoms-in-Molecules (AIM) and Hirshfeld), and potential derived charges (CHELP, CHELPG, and Merz-Kollman). The impact of basis set and quantum mechanical method choices upon population analysis has been considered. The basis sets utilized include Pople (6-21G**, 6-31G**, 6-311G**) and Dunning (cc-pVnZ, aug-cc-pVnZ; n = D, T, Q, 5) basis sets for main group molecules. For the transition metal and heavy element species examined, relativistic forms of the correlation consistent basis sets were used. This is the first time the cc-pVnZ-DK3 and cc-pwCVnZ-DK3 basis sets have been examined with respect to their behavior across all levels of basis sets for atomic charges for an actinide. The quantum methods chosen include two density functional (PBE0 and B3LYP), Hartree-Fock, and second-order Møller-Plesset perturbation theory (MP2) approaches.
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Affiliation(s)
- Sasha C. North
- Department of Chemistry, Michigan State University, East Lansing, MI, United States
| | - Kameron R. Jorgensen
- Department of Biology and Chemistry, Texas A&M International University, Laredo, TX, United States
| | - Jason Pricetolstoy
- Department of Chemistry, Michigan State University, East Lansing, MI, United States
| | - Angela K. Wilson
- Department of Chemistry, Michigan State University, East Lansing, MI, United States
- *Correspondence: Angela K. Wilson,
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12
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Bagheri B, Surwase SS, Lee SS, Park H, Faraji Rad Z, Trevaskis NL, Kim YC. Carbon-based nanostructures for cancer therapy and drug delivery applications. J Mater Chem B 2022; 10:9944-9967. [PMID: 36415922 DOI: 10.1039/d2tb01741e] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
Abstract
Synthesis, design, characterization, and application of carbon-based nanostructures (CBNSs) as drug carriers have attracted a great deal of interest over the past half of the century because of their promising chemical, thermal, physical, optical, mechanical, and electrical properties and their structural diversity. CBNSs are well-known in drug delivery applications due to their unique features such as easy cellular uptake, high drug loading ability, and thermal ablation. CBNSs, including carbon nanotubes, fullerenes, nanodiamond, graphene, and carbon quantum dots have been quite broadly examined for drug delivery systems. This review not only summarizes the most recent studies on developing carbon-based nanostructures for drug delivery (e.g. delivery carrier, cancer therapy and bioimaging), but also tries to deal with the challenges and opportunities resulting from the expansion in use of these materials in the realm of drug delivery. This class of nanomaterials requires advanced techniques for synthesis and surface modifications, yet a lot of critical questions such as their toxicity, biodistribution, pharmacokinetics, and fate of CBNSs in biological systems must be answered.
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Affiliation(s)
- Babak Bagheri
- Department of Chemical and Biomolecular Engineering, Korea Advanced Institute of Science and Technology (KAIST), Daejeon 34141, Republic of Korea. .,School of Engineering, University of Southern Queensland, Springfield Central, QLD, 4300, Australia
| | - Sachin S Surwase
- Department of Chemical and Biomolecular Engineering, Korea Advanced Institute of Science and Technology (KAIST), Daejeon 34141, Republic of Korea.
| | - Su Sam Lee
- Department of Chemical and Biomolecular Engineering, Korea Advanced Institute of Science and Technology (KAIST), Daejeon 34141, Republic of Korea.
| | - Heewon Park
- Department of Chemical and Biomolecular Engineering, Korea Advanced Institute of Science and Technology (KAIST), Daejeon 34141, Republic of Korea.
| | - Zahra Faraji Rad
- School of Engineering, University of Southern Queensland, Springfield Central, QLD, 4300, Australia
| | - Natalie L Trevaskis
- Drug Delivery, Disposition and Dynamics, Monash Institute of Pharmaceutical Sciences, Monash University, 399 Royal Parade, Parkville, VIC, 3052, Australia
| | - Yeu-Chun Kim
- Department of Chemical and Biomolecular Engineering, Korea Advanced Institute of Science and Technology (KAIST), Daejeon 34141, Republic of Korea.
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13
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Jiwanti PK, Wardhana BY, Sutanto LG, Dewi DMM, Putri IZD, Savitri INI. Recent Development of Nano-Carbon Material in Pharmaceutical Application: A Review. Molecules 2022; 27:7578. [PMID: 36364403 PMCID: PMC9654677 DOI: 10.3390/molecules27217578] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/22/2022] [Revised: 10/21/2022] [Accepted: 11/03/2022] [Indexed: 11/09/2022] Open
Abstract
Carbon nanomaterials have attracted researchers in pharmaceutical applications due to their outstanding properties and flexible dimensional structures. Carbon nanomaterials (CNMs) have electrical properties, high thermal surface area, and high cellular internalization, making them suitable for drug and gene delivery, antioxidants, bioimaging, biosensing, and tissue engineering applications. There are various types of carbon nanomaterials including graphene, carbon nanotubes, fullerenes, nanodiamond, quantum dots and many more that have interesting applications in the future. The functionalization of the carbon nanomaterial surface could modify its chemical and physical properties, as well as improve drug loading capacity, biocompatibility, suppress immune response and have the ability to direct drug delivery to the targeted site. Carbon nanomaterials could also be fabricated into composites with proteins and drugs to reduce toxicity and increase effectiveness in the pharmaceutical field. Thus, carbon nanomaterials are very effective for applications in pharmaceutical or biomedical systems. This review will demonstrate the extraordinary properties of nanocarbon materials that can be used in pharmaceutical applications.
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Affiliation(s)
- Prastika K. Jiwanti
- Nanotechnology Engineering, Faculty of Advanced Technology and Multidiscipline, Kampus C Universitas Airlangga, Surabaya 60115, Indonesia
| | - Brasstira Y. Wardhana
- Nanotechnology Engineering, Faculty of Advanced Technology and Multidiscipline, Kampus C Universitas Airlangga, Surabaya 60115, Indonesia
| | - Laurencia G. Sutanto
- Nanotechnology Engineering, Faculty of Advanced Technology and Multidiscipline, Kampus C Universitas Airlangga, Surabaya 60115, Indonesia
| | - Diva Meisya Maulina Dewi
- Nanotechnology Engineering, Faculty of Advanced Technology and Multidiscipline, Kampus C Universitas Airlangga, Surabaya 60115, Indonesia
| | | | - Ilmi Nur Indira Savitri
- Department of Chemistry, Faculty of Science and Technology, Universitas Airlangga, Surabaya 60115, Indonesia
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14
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Wang H, Ke L, Zhou J, Li G, Xu T, Rao P. Multi-spectroscopic, molecular docking and molecular dynamic simulation evaluation of hydroxychloroquine sulfate interaction with caseins and whey proteins. J Mol Liq 2022. [DOI: 10.1016/j.molliq.2022.120460] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/14/2022]
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15
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Thapa S, Singh KRB, Verma R, Singh J, Singh RP. State-of-the-Art Smart and Intelligent Nanobiosensors for SARS-CoV-2 Diagnosis. BIOSENSORS 2022; 12:637. [PMID: 36005033 PMCID: PMC9405813 DOI: 10.3390/bios12080637] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/07/2022] [Revised: 08/10/2022] [Accepted: 08/11/2022] [Indexed: 12/16/2022]
Abstract
The novel coronavirus appeared to be a milder infection initially, but the unexpected outbreak of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), commonly called COVID-19, was transmitted all over the world in late 2019 and caused a pandemic. Human health has been disastrously affected by SARS-CoV-2, which is still evolving and causing more serious concerns, leading to the innumerable loss of lives. Thus, this review provides an outline of SARS-CoV-2, of the traditional tools to diagnose SARS-CoV-2, and of the role of emerging nanomaterials with unique properties for fabricating biosensor devices to diagnose SARS-CoV-2. Smart and intelligent nanomaterial-enabled biosensors (nanobiosensors) have already proven their utility for the diagnosis of several viral infections, as various detection strategies based on nanobiosensor devices are already present, and several other methods are also being investigated by researchers for the determination of SARS-CoV-2 disease; however, considerably more is undetermined and yet to be explored. Hence, this review highlights the utility of various nanobiosensor devices for SARS-CoV-2 determination. Further, it also emphasizes the future outlook of nanobiosensing technologies for SARS-CoV-2 diagnosis.
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Affiliation(s)
- Sushma Thapa
- Department of Chemistry, Institute of Science, Banaras Hindu University, Varanasi 221005, Uttar Pradesh, India
| | - Kshitij RB Singh
- Department of Chemistry, Institute of Science, Banaras Hindu University, Varanasi 221005, Uttar Pradesh, India
| | - Ranjana Verma
- Department of Physics, Institute of Science, Banaras Hindu University, Varanasi 221005, Uttar Pradesh, India
| | - Jay Singh
- Department of Chemistry, Institute of Science, Banaras Hindu University, Varanasi 221005, Uttar Pradesh, India
| | - Ravindra Pratap Singh
- Department of Biotechnology, Faculty of Science, Indira Gandhi National Tribal University, Amarkantak 484887, Madhya Pradesh, India
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16
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Katin KP, Kochaev AI, Kaya S, El-Hajjaji F, Maslov MM. Ab Initio Insight into the Interaction of Metal-Decorated Fluorinated Carbon Fullerenes with Anti-COVID Drugs. Int J Mol Sci 2022; 23:ijms23042345. [PMID: 35216462 PMCID: PMC8879019 DOI: 10.3390/ijms23042345] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/20/2022] [Revised: 02/14/2022] [Accepted: 02/17/2022] [Indexed: 02/01/2023] Open
Abstract
We theoretically investigated the adsorption of two common anti-COVID drugs, favipiravir and chloroquine, on fluorinated C60 fullerene, decorated with metal ions Cr3+, Fe2+, Fe3+, Ni2+. We focused on the effect of fluoridation on the interaction of fullerene with metal ions and drugs in an aqueous solution. We considered three model systems, C60, C60F2 and C60F48, and represented pristine, low-fluorinated and high-fluorinated fullerenes, respectively. Adsorption energies, deformation of fullerene and drug molecules, frontier molecular orbitals and vibrational spectra were investigated in detail. We found that different drugs and different ions interacted differently with fluorinated fullerenes. Cr3+ and Fe2+ ions lead to the defluorination of low-fluorinated fullerenes. Favipiravir also leads to their defluorination with the formation of HF molecules. Therefore, fluorinated fullerenes are not suitable for the delivery of favipiravir and similar drugs molecules. In contrast, we found that fluorine enhances the adsorption of Ni2+ and Fe3+ ions on fullerene and their activity to chloroquine. Ni2+-decorated fluorinated fullerenes were found to be stable and suitable carriers for the loading of chloroquine. Clear shifts of infrared, ultraviolet and visible spectra can provide control over the loading of chloroquine on Ni2+-doped fluorinated fullerenes.
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Affiliation(s)
- Konstantin P. Katin
- Laboratory of Computational Design of Nanostructures, Nanodevices, and Nanotechnologies, Research Institute for the Development of Scientific and Educational Potential of Youth, Aviatorov Str. 14/55, 119620 Moscow, Russia; (A.I.K.); (M.M.M.)
- Institute of Nanotechnologies in Electronics, Spintronics and Photonics, National Research Nuclear University “MEPhI”, Kashirskoe Shosse 31, 115409 Moscow, Russia
- Correspondence:
| | - Alexey I. Kochaev
- Laboratory of Computational Design of Nanostructures, Nanodevices, and Nanotechnologies, Research Institute for the Development of Scientific and Educational Potential of Youth, Aviatorov Str. 14/55, 119620 Moscow, Russia; (A.I.K.); (M.M.M.)
- Research and Education Center “Silicon and Carbon Nanotechnologies”, Ulyanovsk State University, 42 Leo Tolstoy Str., 432017 Ulyanovsk, Russia
| | - Savas Kaya
- Department of Chemistry, Faculty of Science, Cumhuriyet University, Sivas 58140, Turkey;
| | - Fadoua El-Hajjaji
- Engineering Laboratory of Organometallic, Molecular Materials, and Environment, Faculty of Sciences, University Sidi Mohamed Ben Abdellah, Fez 1796, Morocco;
| | - Mikhail M. Maslov
- Laboratory of Computational Design of Nanostructures, Nanodevices, and Nanotechnologies, Research Institute for the Development of Scientific and Educational Potential of Youth, Aviatorov Str. 14/55, 119620 Moscow, Russia; (A.I.K.); (M.M.M.)
- Institute of Nanotechnologies in Electronics, Spintronics and Photonics, National Research Nuclear University “MEPhI”, Kashirskoe Shosse 31, 115409 Moscow, Russia
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17
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Januário EFD, Fachina YJ, Wernke G, Demiti GMM, Beltran LB, Bergamasco R, Vieira AMS. Application of activated carbon functionalized with graphene oxide for efficient removal of COVID-19 treatment-related pharmaceuticals from water. CHEMOSPHERE 2022; 289:133213. [PMID: 34890614 PMCID: PMC9757902 DOI: 10.1016/j.chemosphere.2021.133213] [Citation(s) in RCA: 17] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/09/2021] [Revised: 11/16/2021] [Accepted: 12/06/2021] [Indexed: 05/07/2023]
Abstract
Currently, the COVID-19 pandemic has been increasing the consumption of some drugs, such as chloroquine (CQN) and dipyrone (DIP), which are continuously discharged into water resources through domestic sewage treatment systems. The presence of these drugs in water bodies is worrisome due to their high toxicity, which makes crucial their monitoring and removal, especially by means of advanced technologies. Given this scenario, a new adsorbent material was synthesized through the combination of babassu coconut activated carbon and graphene oxide (GAC-GO). This study was evaluated in batch adsorption processes, aiming at the treatment of water contaminated with CQN and DIP. Characterization analyzes using physicochemical and spectroscopic techniques indicated that the GAC-GO functionalization was successfully performed. The equilibrium time of the adsorption process was 18 and 12 h for CQN and DIP, respectively. Kinetic and isothermal data better fitted to pseudo-second-order and Langmuir models for both drugs. Thermodynamic parameters showed that the process is endothermic and the maximum adsorption capacities of CQN and DIP were 37.65 and 62.43 mg g-1, respectively, both at 318 K. The study of the effect of ionic strength, which simulates a real effluent, demonstrated that the synthesized adsorbent has potential application for the treatment of effluents. Furthermore, satisfactory removal rates were verified for the removal of other contaminants in both simple solutions and synthetic mixtures, evidencing the versatile profile of the adsorbent.
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Affiliation(s)
| | - Yasmin Jaqueline Fachina
- State University of Maringá, Department of Chemical Engineering, Maringá, 87020-900, Paraná, Brazil
| | - Gessica Wernke
- State University of Maringá, Department of Chemical Engineering, Maringá, 87020-900, Paraná, Brazil
| | | | - Laiza Bergamasco Beltran
- State University of Maringá, Graduate Program in Food Science, Maringá, 87020-900, Paraná, Brazil
| | - Rosângela Bergamasco
- State University of Maringá, Department of Chemical Engineering, Maringá, 87020-900, Paraná, Brazil
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18
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Sharoyko VV, Shemchuk OS, Meshcheriakov AA, Vasina LV, Iamalova NR, Luttsev MD, Ivanova DA, Petrov AV, Maystrenko DN, Molchanov OE, Semenov KN. Biocompatibility, antioxidant activity and collagen photoprotection properties of C 60 fullerene adduct with L-methionine. NANOMEDICINE : NANOTECHNOLOGY, BIOLOGY, AND MEDICINE 2022; 40:102500. [PMID: 34843985 DOI: 10.1016/j.nano.2021.102500] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/11/2021] [Revised: 10/14/2021] [Accepted: 11/04/2021] [Indexed: 10/19/2022]
Abstract
Functionalization of the fullerene core with amino acids has become a new and promising direction in the field of nanochemistry. The biologic activity of water-soluble fullerene derivatives is based on such properties as lipophilicity, electron deficiency and photosensitivity. The complex of above-mentioned properties can be used to develop protection of biomolecules (in particular, proteins) from external physical and chemical influences. Thus, development and up-scaling of synthesis procedures, as well as investigation of the biological properties of these derivatives, are extremely important. This paper presents new data on the biocompatibility studies of C60 fullerene adduct with L-methionine (C60[C5H11NO2S]3; C60-Met). Antiradical activity, binding to human serum albumin (HSA), collagen and deoxyribonucleic acid (DNA), hemocompatibility, photodynamic properties, genotoxicity and cytotoxicity were studied. In addition, it was found that C60-Met increases the photostability of the collagen molecule, and this effect is dose-dependent.
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Affiliation(s)
- Vladimir V Sharoyko
- Pavlov First Saint-Petersburg State Medical University, St. Petersburg, Russia; Institute of Chemistry, Saint-Petersburg State University, St. Petersburg, Russia; A. M. Granov Russian Research Centre for Radiology and Surgical Technologies, Saint Petersburg, Russia.
| | - Olga S Shemchuk
- Institute of Chemistry, Saint-Petersburg State University, St. Petersburg, Russia
| | - Anatolii A Meshcheriakov
- Pavlov First Saint-Petersburg State Medical University, St. Petersburg, Russia; Institute of Chemistry, Saint-Petersburg State University, St. Petersburg, Russia
| | - Lubov V Vasina
- Pavlov First Saint-Petersburg State Medical University, St. Petersburg, Russia
| | - Nailia R Iamalova
- Pavlov First Saint-Petersburg State Medical University, St. Petersburg, Russia
| | - Michail D Luttsev
- Pavlov First Saint-Petersburg State Medical University, St. Petersburg, Russia
| | - Daria A Ivanova
- Pavlov First Saint-Petersburg State Medical University, St. Petersburg, Russia
| | - Andrey V Petrov
- Institute of Chemistry, Saint-Petersburg State University, St. Petersburg, Russia
| | - Dmitriy N Maystrenko
- A. M. Granov Russian Research Centre for Radiology and Surgical Technologies, Saint Petersburg, Russia
| | - Oleg E Molchanov
- A. M. Granov Russian Research Centre for Radiology and Surgical Technologies, Saint Petersburg, Russia
| | - Konstantin N Semenov
- Pavlov First Saint-Petersburg State Medical University, St. Petersburg, Russia; Institute of Chemistry, Saint-Petersburg State University, St. Petersburg, Russia; A. M. Granov Russian Research Centre for Radiology and Surgical Technologies, Saint Petersburg, Russia.
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19
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Bibi S, Ur-rehman S, Khalid L, Bhatti IA, Bhatti HN, Iqbal J, Bai FQ, Zhang HX. Investigation of the adsorption properties of gemcitabine anticancer drug with metal-doped boron nitride fullerenes as a drug-delivery carrier: a DFT study. RSC Adv 2022; 12:2873-2887. [PMID: 35425316 PMCID: PMC8979131 DOI: 10.1039/d1ra09319c] [Citation(s) in RCA: 18] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/24/2021] [Accepted: 01/07/2022] [Indexed: 12/29/2022] Open
Abstract
Anticancer-drug delivery is now becoming a challenging approach for researchers as it allows controlled drug delivery near cancerous cells with minimized generic collection and the avoidance of secondary side effects. Hence in this work, the applications of nanostructures as anticancer drug-delivery carriers were widely investigated to target cancerous tissues. Based on DFT calculations, we investigated the transition metal-doped boron nitride nanostructure as a drug-delivery agent for the gemcitabine drug utilizing the B3LYP/6-31G (d, p) level of theory. In this research, the adsorption energy and electronic parameters of gemcitabine on the interaction with the metal-doped BN nanostructures were studied. It has been observed that metal doping significantly enhances the drug-delivery properties of BN nanostructures. Among the investigated nanostructures, Ni–BN has been found to be the most prominent nanostructure to transport gemcitabine with an elevated value of adsorption energy in both the gas phase (−45.79) and water media (−32.46). The interaction between gemcitabine and BN nanostructures was confirmed through frontier molecular orbitals and stabilization energy analysis. The fractional charge transfer, MEP, NCI, and NBO analyses exposed the charge transfer from drug molecule to the BN nanostructures. Transition density maps and UV-VIS spectra were also plotted to investigate the excited-state properties of the designed complexes. Thus, the present study provides an in-depth interaction mechanism of the gemcitabine drug with BN, which reveals that metal-doped BN nanostructures can be a favorable drug-delivery vehicle for the gemcitabine anticancer drug. Anticancer-drug delivery is now becoming a challenging approach for researchers as it allows controlled drug delivery near cancerous cells with minimized generic collection and the avoidance of secondary side effects.![]()
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Affiliation(s)
- Shamsa Bibi
- Department of Chemistry, University of Agriculture, Faisalabad 38000, Pakistan
| | - Shafiq Ur-rehman
- Department of Chemistry, University of Agriculture, Faisalabad 38000, Pakistan
| | - Laryeb Khalid
- Department of Chemistry, University of Agriculture, Faisalabad 38000, Pakistan
| | - Ijaz Ahmad Bhatti
- Department of Chemistry, University of Agriculture, Faisalabad 38000, Pakistan
| | - Haq Nawaz Bhatti
- Department of Chemistry, University of Agriculture, Faisalabad 38000, Pakistan
| | - Javed Iqbal
- Department of Chemistry, University of Agriculture, Faisalabad 38000, Pakistan
| | - Fu Quan Bai
- Institute of Theoretical Chemistry and College of Chemistry, Jilin University, Changchun, 130000, China
| | - Hong-Xing Zhang
- Institute of Theoretical Chemistry and College of Chemistry, Jilin University, Changchun, 130000, China
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20
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Applications of density functional theory in COVID-19 drug modeling. Drug Discov Today 2021; 27:1411-1419. [PMID: 34954327 PMCID: PMC8695517 DOI: 10.1016/j.drudis.2021.12.017] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/15/2021] [Revised: 11/16/2021] [Accepted: 12/20/2021] [Indexed: 01/18/2023]
Abstract
The rapidly evolving Coronavirus 2019 (COVID-19) pandemic has led to millions of deaths around the world, highlighting the pressing need to develop effective antiviral pharmaceuticals. Recent efforts with computer-aided rational drug discovery have allowed detailed examination of drug–macromolecule interactions primarily by molecular mechanics (MM) techniques. Less widely applied in COVID-19 drug modeling is density functional theory (DFT), a quantum mechanics (QM) method that enables electronic structure calculations and elucidations of reaction mechanisms. Here, we review recent advances in applying DFT in molecular modeling studies of COVID-19 pharmaceuticals. We start by providing an overview of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) drugs and targets, followed by a brief introduction to DFT. We then provide a discussion of different approaches by which DFT has been applied. Finally, we discuss essential factors to consider when incorporating DFT in future drug modeling research.
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21
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Zhang L, Qi ZD, Ye YL, Li XH, Chen JH, Sun WM. DFT study on the adsorption of 5-fluorouracil on B 40, B 39M, and M@B 40 (M = Mg, Al, Si, Mn, Cu, Zn). RSC Adv 2021; 11:39508-39517. [PMID: 35492488 PMCID: PMC9044419 DOI: 10.1039/d1ra08308b] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/12/2021] [Accepted: 12/03/2021] [Indexed: 01/02/2023] Open
Abstract
Based on density functional theory, the adsorption behavior of 5-fluorouracil (5-Fu) on B40 and its derivatives has been explored. It was observed that 5-Fu prefers to combine with the corner boron atom of the B40 cage via one of its oxygen atoms, forming a strong polar covalent B-O bond. The adsorption energy of 5-Fu on B40 was calculated to be -11.15 kcal mol-1, and thus, it can be duly released from B40 by protonation in the slightly acidic environment of tumor tissue, which makes for reducing the toxic and side effects of this drug. Additionally, the substituent and embedding effect of Mg, Al, Si, Mn, Cu, and Zn atoms on the drug delivery performance of B40 have been also considered. We hope this work could offer some implications for the potential application of boron-based nanomaterials, such as B40 in drug delivery.
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Affiliation(s)
- Li Zhang
- Fujian Key Laboratory of Drug Target Discovery and Structural and Functional Research, The School of Pharmacy, Fujian Medical University Fuzhou 350108 People's Republic of China
| | - Zi-Dan Qi
- Fujian Key Laboratory of Drug Target Discovery and Structural and Functional Research, The School of Pharmacy, Fujian Medical University Fuzhou 350108 People's Republic of China
| | - Ya-Ling Ye
- Fujian Key Laboratory of Drug Target Discovery and Structural and Functional Research, The School of Pharmacy, Fujian Medical University Fuzhou 350108 People's Republic of China
| | - Xiang-Hui Li
- The School of Medical Technology and Engineering, Fujian Medical University Fuzhou 350004 Fujian People's Republic of China
- Key Laboratory of OptoElectronic Science and Technology for Medicine of Ministry of Education, Fujian Provincial Key Laboratory of Photonics Technology, Fujian Normal University Fuzhou 350007 Fujian People's Republic of China
| | - Jing-Hua Chen
- Fujian Key Laboratory of Drug Target Discovery and Structural and Functional Research, The School of Pharmacy, Fujian Medical University Fuzhou 350108 People's Republic of China
| | - Wei-Ming Sun
- Fujian Key Laboratory of Drug Target Discovery and Structural and Functional Research, The School of Pharmacy, Fujian Medical University Fuzhou 350108 People's Republic of China
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22
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Zhang L, Ye YL, Li XH, Chen JH, Sun WM. On the potential of all-boron fullerene B40 as a carrier for anti-cancer drug nitrosourea. J Mol Liq 2021. [DOI: 10.1016/j.molliq.2021.117533] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
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23
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Bibi S, Urrehman S, Khalid L, Yaseen M, Khan AQ, Jia R. Metal doped fullerene complexes as promising drug delivery materials against COVID-19. ACTA ACUST UNITED AC 2021; 75:6487-6497. [PMID: 34393329 PMCID: PMC8351569 DOI: 10.1007/s11696-021-01815-4] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/21/2021] [Accepted: 08/02/2021] [Indexed: 12/18/2022]
Abstract
An outbreak of respiratory disorder caused by coronavirus has been named as coronavirus infection 2019 (COVID-19). To find a specific treatment against this disease researchers are at the frontline. To cure COVID-19, favipiravir (FPV) has been reported as an effective drug based on its high recovery rate. Among nanomaterials, fullerene C60 has achieved enormous attention as a drug delivery vehicle due to its good bioavailability and low toxicity. Hence, in this work, we have investigated the potential of metal-doped fullerene as a drug carrier, based on DFT calculations by using M06-2X functional and 6-31G(d) basis set in water media. In this research electronic parameters and adsorption energy of FPV on interaction with metal-doped (Cr, Fe, and Ni) fullerene is studied. The charge transfer between drug and doped fullerene has been studied through electrophilicity indexes. The structural and electronic properties are explored in terms of adsorption energy through frontier molecular orbital (FMO) and density of state (DOS). It is observed that doping of fullerene C60 with Cr, Fe, and Ni metals significantly enhances the drug delivery rate and provides numerous advantages including controlled drug release at specific target sites which minimize the generic collection in vivo and reduce the side effects. Thusly, it is suggested that our designed metal-doped complexes might be efficient candidates as drug delivery materials for COVID-19 infection.
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Affiliation(s)
- Shamsa Bibi
- Department of Chemistry, University of Agriculture Faisalabad, Faisalabad, 38000 Pakistan
| | - Shafiq Urrehman
- Department of Chemistry, University of Agriculture Faisalabad, Faisalabad, 38000 Pakistan
| | - Laryeb Khalid
- Department of Chemistry, University of Agriculture Faisalabad, Faisalabad, 38000 Pakistan
| | - Muhammad Yaseen
- Spin-Optoelectronics and Ferro-Thermoelectric (SOFT) Materials and Devices Laboratory, Department of Physics, University of Agriculture Faisalabad, Faisalabad, 38000 Pakistan
| | - Abdul Quyyam Khan
- Pakistan Council of Scientific and Industrial Research Laboratories Complex, , Ferozepur Road, Lahore, 54600 Pakistan
| | - Ran Jia
- Institute of Theoretical Chemistry and College of Chemistry, Jilin University, Changchun, 130000 China
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24
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Fouejio D, Yossa Kamsi R, Tadjouteu Assatse Y, Ejuh G, Ndjaka J. DFT studies of the structural, chemical descriptors and nonlinear optical properties of the drug dihydroartemisinin functionalized on C60 fullerene. COMPUT THEOR CHEM 2021. [DOI: 10.1016/j.comptc.2021.113298] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
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25
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Bagheri Novir S, Aram MR. Quantum mechanical studies of the adsorption of Remdesivir, as an effective drug for treatment of COVID-19, on the surface of pristine, COOH-functionalized and S-, Si- and Al- doped carbon nanotubes. PHYSICA. E, LOW-DIMENSIONAL SYSTEMS & NANOSTRUCTURES 2021; 129:114668. [PMID: 33564274 PMCID: PMC7861578 DOI: 10.1016/j.physe.2021.114668] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/23/2020] [Revised: 01/07/2021] [Accepted: 01/30/2021] [Indexed: 05/26/2023]
Abstract
Remdesivir has been recognized as an important medicine in the control of COVID-19 illness. Since carbon nanotubes were considered in the design of novel drug delivery vehicles, the interaction between simple CNT, functionalized CNT by carboxylic group and S-, Al-, and Si-doped CNT and Remdesivir drug were studied using density functional theory (DFT) and time dependent DFT (TDDFT) calculations. The results of this work show that the Si-doped CNT is the best drug delivery system for Remdesivir due to its better electronic, energetic, adsorption and thermodynamic properties.
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Affiliation(s)
- Samaneh Bagheri Novir
- Multiphysics & Multiscale Simulation Group, Iranian Center for Quantum Technologies (ICQTs), Tehran, Iran
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26
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Debnath SK, Srivastava R. Drug Delivery With Carbon-Based Nanomaterials as Versatile Nanocarriers: Progress and Prospects. FRONTIERS IN NANOTECHNOLOGY 2021. [DOI: 10.3389/fnano.2021.644564] [Citation(s) in RCA: 23] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/13/2023] Open
Abstract
With growing interest, a large number of researches have been conducted on carbon-based nanomaterials (CBNs). However, their uses are limited due to comprehensive potential environmental and human health effects. It is often confusing for researchers to make an informed choice regarding the versatile carbon-based nanocarrier system and its potential applications. This review has highlighted emerging applications and cutting-edge progress of CBNs in drug delivery. Some critical factors like enzymatic degradation, surface modification, biological interactions, and bio-corona have been discussed here. These factors will help to fabricate CBNs for effective drug delivery. This review also addresses recent advancements in carbon-based target specific and release controlled drug delivery to improve disease treatment. The scientific community has turned their research efforts into the development of novel production methods of CBNs to make their production more attractive to the industrial sector. Due to the nanosize and diversified physical properties, these CBNs have demonstrated distinct biological interaction. Thus long-term preclinical toxicity study is recommended before finally translating to clinical application.
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Riley PR, Narayan RJ. Recent advances in carbon nanomaterials for biomedical applications: A review. CURRENT OPINION IN BIOMEDICAL ENGINEERING 2021; 17:100262. [PMID: 33786405 PMCID: PMC7993985 DOI: 10.1016/j.cobme.2021.100262] [Citation(s) in RCA: 35] [Impact Index Per Article: 8.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/01/2020] [Revised: 12/31/2020] [Accepted: 01/04/2021] [Indexed: 12/20/2022]
Abstract
With the emergence of new pathogens like coronavirus disease 2019 and the prevalence of cancer as one of the leading causes of mortality globally, the effort to develop appropriate materials to address these challenges is a critical research area. Researchers around the world are investigating new types of materials and biological systems to fight against various diseases that affect humans and animals. Carbon nanostructures with their properties of straightforward functionalization, capability for drug loading, biocompatibility, and antiviral properties have become a major focus of biomedical researchers. However, reducing toxicity, enhancing biocompatibility, improving dispersibility, and enhancing water solubility have been challenging for carbon-based biomedical systems. The goal of this article is to provide a review on the latest progress involving the use of carbon nanostructures, namely fullerenes, graphene, and carbon nanotubes, for drug delivery, cancer therapy, and antiviral applications.
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Affiliation(s)
- Parand R Riley
- Department of Materials Science and Engineering, Centennial Campus, North Carolina State University, Raleigh, NC, 27695-7907, USA
| | - Roger J Narayan
- Joint Department of Biomedical Engineering, Centennial Campus, North Carolina State University, Raleigh, NC, 27695-7115, USA
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Mallakpour S, Azadi E, Hussain CM. Fight against COVID-19 pandemic with the help of carbon-based nanomaterials. NEW J CHEM 2021. [DOI: 10.1039/d1nj01333e] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Abstract
We have considered the newest momentous outcomes in carbon-based nanomaterials for utility in controlling and fighting the SARS-CoV-2 virus.
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Affiliation(s)
- Shadpour Mallakpour
- Organic Polymer Chemistry Research Laboratory
- Department of Chemistry
- Isfahan University of Technology
- Isfahan
- Islamic Republic of Iran
| | - Elham Azadi
- Organic Polymer Chemistry Research Laboratory
- Department of Chemistry
- Isfahan University of Technology
- Isfahan
- Islamic Republic of Iran
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29
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Rahimi R, Solimannejad M, Farghadani M. Adsorption of chloroquine and hydroxychloroquine as potential drugs for SARS-CoV-2 infection on BC 3 nanosheets: a DFT study. NEW J CHEM 2021. [DOI: 10.1039/d1nj03084a] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
Abstract
The adsorption of HCQ on BC3 nanosheets is stronger than that of CQ. The hydrogenated BC3 nanosheet is a more prominent nanocarrier for the CQ and HCQ drugs than the bare BC3 monolayer.
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Affiliation(s)
- Rezvan Rahimi
- Department of Chemistry, Faculty of Science, Arak University, Arak 38156-8-8349, Iran
- Institute of Nanosciences and Nanotechnology, Arak University, Arak 38156-8-8349, Iran
| | - Mohammad Solimannejad
- Department of Chemistry, Faculty of Science, Arak University, Arak 38156-8-8349, Iran
- Institute of Nanosciences and Nanotechnology, Arak University, Arak 38156-8-8349, Iran
| | - Mohadeseh Farghadani
- Department of Chemistry, Faculty of Science, Arak University, Arak 38156-8-8349, Iran
- Institute of Nanosciences and Nanotechnology, Arak University, Arak 38156-8-8349, Iran
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30
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Brahimi M, SELLAM D, Bouchoucha A, Arbia Y, Merazka H, Bagtache R, Djebbari K, Bachari K, Talhi O. In-silico modelling of fullerene and fullerene adsorbed by nO 2 molecules ( n(O 2)@ Cm with n = 1, 2, 4 and m = 48 and 60) as potential SARS-CoV-2 inhibitors. BULLETIN OF MATERIALS SCIENCE 2021; 44:220. [PMCID: PMC8313420 DOI: 10.1007/s12034-021-02505-3] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/12/2021] [Accepted: 05/12/2021] [Indexed: 05/24/2023]
Abstract
Abstract COVID-19 pandemic started more than a year ago and has infected more than 115 million of people from ~210 countries and >2.5 million of deaths worldwide being reported without any commercial and effective treatment or vaccine being yet released. However, recent studies on nanomaterials such as fullerenes, carbon nanotubes and graphene showed that they possess anti-inflammatory, antiviral, anti-oxidant and anti-HIV properties. Herein, the interactions which established between the fullerenes Cm (m = 48, 60, 70, 80, 84 and 86) and the spike protein (SP) of SARS-CoV-2 and the human ACE2 receptor have been investigated based on the density functional theory (DFT) method with the CAM-B3LYP functional and the 6-31G* basis. The results of this study show that C48 exhibited as potential inhibitor of SARS-CoV-2. Because of the presence of heteroatoms on the surface of fullerenes which systematically reduce energy gaps, which in turn increase their reactivities. The oxygen adsorbed by fullerenes increases the number of non-covalent contacts and involves a large number of hydrogen bonds, while decreasing the binding energies. Thus, the hACE2-SP-4O2@C60 complex is strongly recommended for inhibiting SARS-CoV-2 in the final phase of contamination. Graphic abstract Stabilizing interactions between fullerenes and the spike protein of SARS-CoV-2.![]()
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Affiliation(s)
- Meziane Brahimi
- Laboratoire de Physico Chimie Théorique et Chimie Informatique (LPCTCI), USTHB, BP N° 32 Al Alia, 16111 Alger, Algeria
| | - Djamila SELLAM
- Laboratoire de Chimie Appliquée et de Génie Chimique, Université Mouloud Mammeri, 15000 Tizi Ouzou, Algeria
| | - Afaf Bouchoucha
- Laboratoire d’Hydrométallurgie et Chimie Inorganique Moléculaire, USTHB, BP N° 32 el Alia, 16111 Alger, Algeria
| | - Yassamina Arbia
- Laboratoire de Physico Chimie Théorique et Chimie Informatique (LPCTCI), USTHB, BP N° 32 Al Alia, 16111 Alger, Algeria
| | - Hadjer Merazka
- Laboratoire d’Hydrométallurgie et Chimie Inorganique Moléculaire, USTHB, BP N° 32 el Alia, 16111 Alger, Algeria
| | - Radia Bagtache
- Laboratoire de Chimie Organique Appliquée, USTHB, BP N° 32 el Alia, 16111 Alger, Algeria
| | - Khaled Djebbari
- Laboratoire de Physico Chimie Théorique et Chimie Informatique (LPCTCI), USTHB, BP N° 32 Al Alia, 16111 Alger, Algeria
| | - Khaldoun Bachari
- Centre de Recherche en Analyses Physico Chimiques (CRAPC), 42415 Bou Ismail, Tipaza Algeria
| | - Oualid Talhi
- Centre de Recherche en Analyses Physico Chimiques (CRAPC), 42415 Bou Ismail, Tipaza Algeria
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Sehrawat P, Khatkar A, Boora P, Kumar M, Malik R, Khatkar S, Taxak V. Combustion derived color tunable Sm3+ activated BaLaAlO4 nanocrystals for various innovative solid state illuminants. Chem Phys Lett 2020. [DOI: 10.1016/j.cplett.2020.137937] [Citation(s) in RCA: 31] [Impact Index Per Article: 6.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]
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