1
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Wagner JN. Pain and temporality: a merleau-pontyian approach. MEDICINE, HEALTH CARE, AND PHILOSOPHY 2024; 27:321-331. [PMID: 38760624 PMCID: PMC11310234 DOI: 10.1007/s11019-024-10205-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Accepted: 04/16/2024] [Indexed: 05/19/2024]
Abstract
Chronic pain is a common disorder with enormous sociomedical importance. A major part of primary and secondary costs of illness is caused by the various pain syndromes. Nociception - the sensory perception of a painful stimulus - is a complex process relying on an intricate system of anatomical, neurophysiological and biochemical networks. This applies even more so to pain - the state of experiencing a nociceptive event, of interpreting it in terms of meaning for the affected individual and of suffering a range of emotions it elicits. This intricacy renders it obvious, that the empirical medical sciences alone cannot explain all aspects of pain. Hence, it has also become a focus of phenomenological research. One aspect of these investigations is the interaction of pain and the perception of the lived body's spatiality. The focus of this article will build on these concepts to develop a construct of the alteration of temporality caused by chronic pain and the effects this spells out for the affected subject. To this end, I will primarily draw on Merleau-Ponty's ideas of the lived body as well as on theories of enactivism and embodiment. I will also point out parallels to neuroscientific data, thereby demonstrating the proximity of phenomenology and neuroscience. A possible partial solution to the pain dilemma may be derived from psychology: techniques relying on cognitive behavioural intervention, awareness training, and existential analysis may provide alleviation to patients suffering from chronic pain.
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Affiliation(s)
- Judith N Wagner
- Faculty of Humanities, Department of Philosophy, Charles University, Prague, Czech Republic.
- Evangelisches Klinikum Gelsenkirchen, Teaching Hospital University Duisburg-Essen, Munckelstrasse 27, 45879, Gelsenkirchen, Germany.
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2
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Bao Y, Gong Y. Accurate neuron segmentation method for one-photon calcium imaging videos combining convolutional neural networks and clustering. Commun Biol 2024; 7:970. [PMID: 39122882 PMCID: PMC11316101 DOI: 10.1038/s42003-024-06668-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/07/2023] [Accepted: 08/01/2024] [Indexed: 08/12/2024] Open
Abstract
One-photon fluorescent calcium imaging helps understand brain functions by recording large-scale neural activities in freely moving animals. Automatic, fast, and accurate active neuron segmentation algorithms are essential to extract and interpret information from these videos. One-photon imaging videos' low resolution, high noise, and high background fluctuation pose significant challenges. Here, we develop a software pipeline to address the challenges of processing one-photon calcium imaging videos. We extend our previous two-photon active neuron segmentation algorithm, Shallow U-Net Neuron Segmentation (SUNS), to better suppress background fluctuations in one-photon videos. We also develop additional neuron extraction (ANE) to locate small or dim neurons missed by SUNS. To train our segmentation method, we create ground truth neurons by developing a manual labeling pipeline assisted with semi-automatic refinement. Our method is more accurate and faster than state-of-the-art techniques when processing simulated videos and multiple experimental datasets acquired over various brain regions with different imaging conditions.
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Affiliation(s)
- Yijun Bao
- Department of Biomedical Engineering, Duke University, Durham, NC, 27708, USA.
- ZJU-Hangzhou Global Scientific and Technological Innovation Center, Zhejiang University, Hangzhou, 311215, China.
| | - Yiyang Gong
- Department of Biomedical Engineering, Duke University, Durham, NC, 27708, USA.
- Department of Neurobiology, Duke University, Durham, NC, 27708, USA.
- Department of Cell Biology, University of Oklahoma Health Science Center, Oklahoma City, OK, 73104, USA.
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3
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Lohnas LJ, Howard MW. The influence of emotion on temporal context models. Cogn Emot 2024:1-29. [PMID: 39007902 DOI: 10.1080/02699931.2024.2371075] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/12/2023] [Accepted: 06/17/2024] [Indexed: 07/16/2024]
Abstract
Temporal context models (TCMs) have been influential in understanding episodic memory and its neural underpinnings. Recently, TCMs have been extended to explain emotional memory effects, one of the most clinically important findings in the field of memory research. This review covers recent advances in hypotheses for the neural representation of spatiotemporal context through the lens of TCMs, including their ability to explain the influence of emotion on episodic and temporal memory. In recent years, simplifying assumptions of "classical" TCMs - with exponential trace decay and the mechanism by which temporal context is recovered - have become increasingly clear. The review also outlines how recent advances could be incorporated into a future TCM, beyond classical assumptions, to integrate emotional modulation.
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Affiliation(s)
- Lynn J Lohnas
- Department of Psychology, Syracuse University, Syracuse, NY, USA
| | - Marc W Howard
- Department of Psychological and Brain Sciences, Boston University, Boston, MA, USA
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4
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Delamare G, Zaki Y, Cai DJ, Clopath C. Drift of neural ensembles driven by slow fluctuations of intrinsic excitability. eLife 2024; 12:RP88053. [PMID: 38712831 DOI: 10.7554/elife.88053] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/08/2024] Open
Abstract
Representational drift refers to the dynamic nature of neural representations in the brain despite the behavior being seemingly stable. Although drift has been observed in many different brain regions, the mechanisms underlying it are not known. Since intrinsic neural excitability is suggested to play a key role in regulating memory allocation, fluctuations of excitability could bias the reactivation of previously stored memory ensembles and therefore act as a motor for drift. Here, we propose a rate-based plastic recurrent neural network with slow fluctuations of intrinsic excitability. We first show that subsequent reactivations of a neural ensemble can lead to drift of this ensemble. The model predicts that drift is induced by co-activation of previously active neurons along with neurons with high excitability which leads to remodeling of the recurrent weights. Consistent with previous experimental works, the drifting ensemble is informative about its temporal history. Crucially, we show that the gradual nature of the drift is necessary for decoding temporal information from the activity of the ensemble. Finally, we show that the memory is preserved and can be decoded by an output neuron having plastic synapses with the main region.
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Affiliation(s)
- Geoffroy Delamare
- Department of Bioengineering, Imperial College London, London, United Kingdom
| | - Yosif Zaki
- Department of Neuroscience, Icahn School of Medicine at Mount Sinai, New York, United States
| | - Denise J Cai
- Department of Neuroscience, Icahn School of Medicine at Mount Sinai, New York, United States
| | - Claudia Clopath
- Department of Bioengineering, Imperial College London, London, United Kingdom
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5
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Savelli F. Spontaneous Dynamics of Hippocampal Place Fields in a Model of Combinatorial Competition among Stable Inputs. J Neurosci 2024; 44:e1663232024. [PMID: 38316560 PMCID: PMC10977031 DOI: 10.1523/jneurosci.1663-23.2024] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/03/2023] [Revised: 01/16/2024] [Accepted: 01/21/2024] [Indexed: 02/07/2024] Open
Abstract
We present computer simulations illustrating how the plastic integration of spatially stable inputs could contribute to the dynamic character of hippocampal spatial representations. In novel environments of slightly larger size than typical apparatus, the emergence of well-defined place fields in real place cells seems to rely on inputs from normally functioning grid cells. Theoretically, the grid-to-place transformation is possible if a place cell is able to respond selectively to a combination of suitably aligned grids. We previously identified the functional characteristics that allow a synaptic plasticity rule to accomplish this selection by synaptic competition during rat foraging behavior. Here, we show that the synaptic competition can outlast the formation of place fields, contributing to their spatial reorganization over time, when the model is run in larger environments and the topographical/modular organization of grid inputs is taken into account. Co-simulated cells that differ only by their randomly assigned grid inputs display different degrees and kinds of spatial reorganization-ranging from place-field remapping to more subtle in-field changes or lapses in firing. The model predicts a greater number of place fields and propensity for remapping in place cells recorded from more septal regions of the hippocampus and/or in larger environments, motivating future experimental standardization across studies and animal models. In sum, spontaneous remapping could arise from rapid synaptic learning involving inputs that are functionally homogeneous, spatially stable, and minimally stochastic.
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Affiliation(s)
- Francesco Savelli
- Department of Neuroscience, Developmental and Regenerative Biology, The University of Texas at San Antonio, San Antonio, Texas 78249
- Neurosciences Institute, The University of Texas at San Antonio, San Antonio, Texas 78249
- Brain Health Consortium, The University of Texas at San Antonio, San Antonio, Texas 78249
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6
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Varga V, Petersen P, Zutshi I, Huszar R, Zhang Y, Buzsáki G. Working memory features are embedded in hippocampal place fields. Cell Rep 2024; 43:113807. [PMID: 38401118 PMCID: PMC11044127 DOI: 10.1016/j.celrep.2024.113807] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/11/2023] [Revised: 12/13/2023] [Accepted: 01/31/2024] [Indexed: 02/26/2024] Open
Abstract
Hippocampal principal neurons display both spatial tuning properties and memory features. Whether this distinction corresponds to separate neuron types or a context-dependent continuum has been debated. We report here that the task-context ("splitter") feature is highly variable along both trial and spatial position axes. Neurons acquire or lose splitter features across trials even when place field features remain unaltered. Multiple place fields of the same neuron can individually encode both past or future run trajectories, implying that splitter fields are under the control of assembly activity. Place fields can be differentiated into subfields by the behavioral choice of the animal, and splitting within subfields evolves across trials. Interneurons also differentiate choices by integrating inputs from pyramidal cells. Finally, bilateral optogenetic inactivation of the medial entorhinal cortex reversibly decreases the fraction of splitter fields. Our findings suggest that place or splitter features are different manifestations of the same hippocampal computation.
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Affiliation(s)
- Viktor Varga
- Neuroscience Institute, Langone Health, New York University, New York, NY, USA; Subcortical Modulation Research Group, Institute of Experimental Medicine - Hungarian Research Network, Budapest, Hungary
| | - Peter Petersen
- Neuroscience Institute, Langone Health, New York University, New York, NY, USA; Department of Neuroscience, University of Copenhagen, Copenhagen, Denmark
| | - Ipshita Zutshi
- Neuroscience Institute, Langone Health, New York University, New York, NY, USA
| | - Roman Huszar
- Neuroscience Institute, Langone Health, New York University, New York, NY, USA
| | - Yiyao Zhang
- Neuroscience Institute, Langone Health, New York University, New York, NY, USA
| | - György Buzsáki
- Neuroscience Institute, Langone Health, New York University, New York, NY, USA; Department of Neuroscience and Physiology, Langone Health, New York University, New York, NY, USA; Department of Neurology, Langone Health, New York University, New York, NY, USA.
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7
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Puhger K, Crestani AP, Diniz CRF, Wiltgen BJ. The hippocampus contributes to retroactive stimulus associations during trace fear conditioning. iScience 2024; 27:109035. [PMID: 38375237 PMCID: PMC10875141 DOI: 10.1016/j.isci.2024.109035] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/30/2023] [Revised: 12/04/2023] [Accepted: 01/23/2024] [Indexed: 02/21/2024] Open
Abstract
Binding events that occur at different times are essential for memory formation. In trace fear conditioning, animals associate a tone and footshock despite no temporal overlap. The hippocampus is thought to mediate this learning by maintaining a memory of the tone until shock occurrence, however, evidence for sustained hippocampal tone representations is lacking. Here, we demonstrate a retrospective role for the hippocampus in trace fear conditioning. Bulk calcium imaging revealed sustained increases in CA1 activity after footshock that were not observed after tone termination. Optogenetic silencing of CA1 immediately after footshock impaired subsequent memory. Additionally, footshock increased the number of sharp-wave ripples compared to baseline during conditioning. Therefore, post-shock hippocampal activity likely supports learning by reactivating and linking latent tone and shock representations. These findings highlight an underappreciated function of post-trial hippocampal activity in enabling retroactive temporal associations during new learning, as opposed to persistent maintenance of stimulus representations.
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Affiliation(s)
- Kyle Puhger
- Department of Psychology, University of California, Davis, 135 Young Hall, 1 Shields Avenue, Davis, CA 95616, USA
- Center for Neuroscience, University of California, Davis, 1544 Newton Court, Davis, CA 95618, USA
| | - Ana P. Crestani
- Center for Neuroscience, University of California, Davis, 1544 Newton Court, Davis, CA 95618, USA
| | - Cassiano R.A. F. Diniz
- Center for Neuroscience, University of California, Davis, 1544 Newton Court, Davis, CA 95618, USA
| | - Brian J. Wiltgen
- Department of Psychology, University of California, Davis, 135 Young Hall, 1 Shields Avenue, Davis, CA 95616, USA
- Center for Neuroscience, University of California, Davis, 1544 Newton Court, Davis, CA 95618, USA
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8
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Subramanian DL, Smith DM. Time Cells in the Retrosplenial Cortex. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2024:2024.03.01.583039. [PMID: 38464235 PMCID: PMC10925311 DOI: 10.1101/2024.03.01.583039] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 03/12/2024]
Abstract
The retrosplenial cortex (RSC) is a key component of the brain's memory systems, with anatomical connections to the hippocampus, anterior thalamus, and entorhinal cortex. This circuit has been implicated in episodic memory and many of these structures have been shown to encode temporal information, which is critical for episodic memory. For example, hippocampal time cells reliably fire during specific segments of time during a delay period. Although RSC lesions are known to disrupt temporal memory, time cells have not been observed there. In the present study, we examined the firing patterns of RSC neurons during the intertrial delay period of two behavioral tasks, a blocked alternation task and a cued T-maze task. For the blocked alternation task, rats were required to approach the east or west arm of a plus maze for reward during different blocks of trials. Because the reward locations were not cued, the rat had to remember the goal location for each trial. In the cued T-maze task, the reward location was explicitly cued with a light and the rats simply had to approach the light for reward, so there was no requirement to hold a memory during the intertrial delay. Time cells were prevalent in the blocked alternation task, and most time cells clearly differentiated the east and west trials. We also found that RSC neurons could exhibit off-response time fields, periods of reliably inhibited firing. Time cells were also observed in the cued T-maze, but they were less prevalent and they did not differentiate left and right trials as well as in the blocked alternation task, suggesting that RSC time cells are sensitive to the memory demands of the task. These results suggest that temporal coding is a prominent feature of RSC firing patterns, consistent with an RSC role in episodic memory.
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Affiliation(s)
| | - David M. Smith
- Department of Psychology, Cornell University, Ithaca, NY 14853
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9
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Ma M, Simoes de Souza F, Futia GL, Anderson SR, Riguero J, Tollin D, Gentile-Polese A, Platt JP, Steinke K, Hiratani N, Gibson EA, Restrepo D. Sequential activity of CA1 hippocampal cells constitutes a temporal memory map for associative learning in mice. Curr Biol 2024; 34:841-854.e4. [PMID: 38325376 DOI: 10.1016/j.cub.2024.01.021] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/21/2023] [Revised: 01/02/2024] [Accepted: 01/08/2024] [Indexed: 02/09/2024]
Abstract
Sequential neural dynamics encoded by time cells play a crucial role in hippocampal function. However, the role of hippocampal sequential neural dynamics in associative learning is an open question. We used two-photon Ca2+ imaging of dorsal CA1 (dCA1) neurons in the stratum pyramidale (SP) in head-fixed mice performing a go-no go associative learning task to investigate how odor valence is temporally encoded in this area of the brain. We found that SP cells responded differentially to the rewarded or unrewarded odor. The stimuli were decoded accurately from the activity of the neuronal ensemble, and accuracy increased substantially as the animal learned to differentiate the stimuli. Decoding the stimulus from individual SP cells responding differentially revealed that decision-making took place at discrete times after stimulus presentation. Lick prediction decoded from the ensemble activity of cells in dCA1 correlated linearly with lick behavior. Our findings indicate that sequential activity of SP cells in dCA1 constitutes a temporal memory map used for decision-making in associative learning. VIDEO ABSTRACT.
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Affiliation(s)
- Ming Ma
- Department of Cell and Developmental Biology, University of Colorado Anschutz Medical Campus, Aurora, CO 80045, USA
| | - Fabio Simoes de Souza
- Department of Cell and Developmental Biology, University of Colorado Anschutz Medical Campus, Aurora, CO 80045, USA; Center for Mathematics, Computation and Cognition, Federal University of ABC, Sao Bernardo do Campo 09606-045, SP, Brazil
| | - Gregory L Futia
- Department of Bioengineering, University of Colorado Anschutz Medical Campus, Aurora, CO 80045, USA
| | - Sean R Anderson
- Department of Physiology and Biophysics, University of Colorado Anschutz Medical Campus, Aurora, CO 80045, USA
| | - Jose Riguero
- Department of Physiology and Biophysics, University of Colorado Anschutz Medical Campus, Aurora, CO 80045, USA; Neuroscience Graduate Program, University of Colorado Anschutz Medical Campus, Aurora, CO 80045, USA
| | - Daniel Tollin
- Department of Physiology and Biophysics, University of Colorado Anschutz Medical Campus, Aurora, CO 80045, USA; Neuroscience Graduate Program, University of Colorado Anschutz Medical Campus, Aurora, CO 80045, USA
| | - Arianna Gentile-Polese
- Department of Cell and Developmental Biology, University of Colorado Anschutz Medical Campus, Aurora, CO 80045, USA
| | - Jonathan P Platt
- Department of Neurosurgery, University of Colorado Anschutz Medical Campus, Aurora, CO 80045, USA
| | - Kira Steinke
- Integrated Physiology Graduate Program, University of Colorado Anschutz Medical Campus, Aurora, CO 80045, USA
| | - Naoki Hiratani
- Department of Neuroscience, Washington University, St. Louis, MO 63110, USA
| | - Emily A Gibson
- Department of Bioengineering, University of Colorado Anschutz Medical Campus, Aurora, CO 80045, USA; Neuroscience Graduate Program, University of Colorado Anschutz Medical Campus, Aurora, CO 80045, USA
| | - Diego Restrepo
- Department of Cell and Developmental Biology, University of Colorado Anschutz Medical Campus, Aurora, CO 80045, USA; Neuroscience Graduate Program, University of Colorado Anschutz Medical Campus, Aurora, CO 80045, USA.
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10
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Cao R, Bright IM, Howard MW. Ramping cells in rodent mPFC encode time to past and future events via real Laplace transform. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2024:2024.02.13.580170. [PMID: 38405896 PMCID: PMC10888827 DOI: 10.1101/2024.02.13.580170] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/27/2024]
Abstract
In interval reproduction tasks, animals must remember the event starting the interval and anticipate the time of the planned response to terminate the interval. The interval reproduction task thus allows for studying both memory for the past and anticipation of the future. We analyzed previously published recordings from rodent mPFC (Henke et al., 2021) during an interval reproduction task and identified two cell groups by modeling their temporal receptive fields using hierarchical Bayesian models. The firing in the "past cells" group peaked at the start of the interval and relaxed exponentially back to baseline. The firing in the "future cells" group increased exponentially and peaked right before the planned action at the end of the interval. Contrary to the previous assumption that timing information in the brain has one or two time scales for a given interval, we found strong evidence for a continuous distribution of the exponential rate constants for both past and future cell populations. The real Laplace transformation of time predicts exponential firing with a continuous distribution of rate constants across the population. Therefore, the firing pattern of the past cells can be identified with the Laplace transform of time since the past event while the firing pattern of the future cells can be identified with the Laplace transform of time until the planned future event.
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Affiliation(s)
- Rui Cao
- Department of Psychological and Brain Sciences, Boston University
| | - Ian M Bright
- Department of Psychological and Brain Sciences, Boston University
| | - Marc W Howard
- Department of Psychological and Brain Sciences, Boston University
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11
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Rolando F, Kononowicz TW, Duhamel JR, Doyère V, Wirth S. Distinct neural adaptations to time demand in the striatum and the hippocampus. Curr Biol 2024; 34:156-170.e7. [PMID: 38141617 DOI: 10.1016/j.cub.2023.11.066] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/12/2023] [Revised: 10/18/2023] [Accepted: 11/30/2023] [Indexed: 12/25/2023]
Abstract
How do neural codes adjust to track time across a range of resolutions, from milliseconds to multi-seconds, as a function of the temporal frequency at which events occur? To address this question, we studied time-modulated cells in the striatum and the hippocampus, while macaques categorized three nested intervals within the sub-second or the supra-second range (up to 1, 2, 4, or 8 s), thereby modifying the temporal resolution needed to solve the task. Time-modulated cells carried more information for intervals with explicit timing demand, than for any other interval. The striatum, particularly the caudate, supported the most accurate temporal prediction throughout all time ranges. Strikingly, its temporal readout adjusted non-linearly to the time range, suggesting that the striatal resolution shifted from a precise millisecond to a coarse multi-second range as a function of demand. This is in line with monkey's behavioral latencies, which indicated that they tracked time until 2 s but employed a coarse categorization strategy for durations beyond. By contrast, the hippocampus discriminated only the beginning from the end of intervals, regardless of the range. We propose that the hippocampus may provide an overall poor signal marking an event's beginning, whereas the striatum optimizes neural resources to process time throughout an interval adapting to the ongoing timing necessity.
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Affiliation(s)
- Felipe Rolando
- Institut des Sciences Cognitives Marc Jeannerod, CNRS, Université Lyon 1, 67 boulevard Pinel, 69500 Bron, France
| | - Tadeusz W Kononowicz
- Institut des Sciences Cognitives Marc Jeannerod, CNRS, Université Lyon 1, 67 boulevard Pinel, 69500 Bron, France; Université Paris-Saclay, CNRS, Institut des Neurosciences Paris-Saclay (NeuroPSI), 91400 Saclay, France; Institute of Psychology, The Polish Academy of Sciences, ul. Jaracza 1, 00-378 Warsaw, Poland
| | - Jean-René Duhamel
- Institut des Sciences Cognitives Marc Jeannerod, CNRS, Université Lyon 1, 67 boulevard Pinel, 69500 Bron, France
| | - Valérie Doyère
- Université Paris-Saclay, CNRS, Institut des Neurosciences Paris-Saclay (NeuroPSI), 91400 Saclay, France
| | - Sylvia Wirth
- Institut des Sciences Cognitives Marc Jeannerod, CNRS, Université Lyon 1, 67 boulevard Pinel, 69500 Bron, France.
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12
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Lin D, Huang AZ, Richards BA. Temporal encoding in deep reinforcement learning agents. Sci Rep 2023; 13:22335. [PMID: 38102369 PMCID: PMC10724179 DOI: 10.1038/s41598-023-49847-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/14/2023] [Accepted: 12/12/2023] [Indexed: 12/17/2023] Open
Abstract
Neuroscientists have observed both cells in the brain that fire at specific points in time, known as "time cells", and cells whose activity steadily increases or decreases over time, known as "ramping cells". It is speculated that time and ramping cells support temporal computations in the brain and carry mnemonic information. However, due to the limitations in animal experiments, it is difficult to determine how these cells really contribute to behavior. Here, we show that time cells and ramping cells naturally emerge in the recurrent neural networks of deep reinforcement learning models performing simulated interval timing and working memory tasks, which have learned to estimate expected rewards in the future. We show that these cells do indeed carry information about time and items stored in working memory, but they contribute to behavior in large part by providing a dynamic representation on which policy can be computed. Moreover, the information that they do carry depends on both the task demands and the variables provided to the models. Our results suggest that time cells and ramping cells could contribute to temporal and mnemonic calculations, but the way in which they do so may be complex and unintuitive to human observers.
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Affiliation(s)
- Dongyan Lin
- Integrated Program in Neuroscience, McGill University, Montreal, QC, H3A 0G4, Canada.
- Mila, Montreal, QC, H2S 3H1, Canada.
| | - Ann Zixiang Huang
- Mila, Montreal, QC, H2S 3H1, Canada
- School of Computer Science, McGill University, Montreal, QC, H3A 0G4, Canada
| | - Blake Aaron Richards
- Integrated Program in Neuroscience, McGill University, Montreal, QC, H3A 0G4, Canada
- Mila, Montreal, QC, H2S 3H1, Canada
- School of Computer Science, McGill University, Montreal, QC, H3A 0G4, Canada
- Department of Neurology and Neurosurgery, Montreal Neurological Institute, McGill University, Montreal, QC, H3A 0G4, Canada
- Learning in Machines and Brains Program, Canadian Institute for Advanced Research, Toronto, ON, M5G 1M1, Canada
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13
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M Aghajan Z, Kreiman G, Fried I. Minute-scale periodicity of neuronal firing in the human entorhinal cortex. Cell Rep 2023; 42:113271. [PMID: 37906591 DOI: 10.1016/j.celrep.2023.113271] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/16/2023] [Revised: 07/09/2023] [Accepted: 09/28/2023] [Indexed: 11/02/2023] Open
Abstract
Grid cells in the entorhinal cortex demonstrate spatially periodic firing, thought to provide a spatial map on behaviorally relevant length scales. Whether such periodicity exists for behaviorally relevant time scales in the human brain remains unclear. We investigate neuronal firing during a temporally continuous experience by presenting 14 neurosurgical patients with a video while recording neuronal activity from multiple brain regions. We report on neurons that modulate their activity in a periodic manner across different time scales-from seconds to many minutes, most prevalently in the entorhinal cortex. These neurons remap their dominant periodicity to shorter time scales during a subsequent recognition memory task. When the video is presented at two different speeds, a significant percentage of these temporally periodic cells (TPCs) maintain their time scales, suggesting a degree of invariance. The TPCs' temporal periodicity might complement the spatial periodicity of grid cells and together provide scalable spatiotemporal metrics for human experience.
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Affiliation(s)
- Zahra M Aghajan
- Department of Neurosurgery, David Geffen School of Medicine, University of California Los Angeles, Los Angeles, CA 90095, USA.
| | - Gabriel Kreiman
- Children's Hospital, Harvard Medical School, Boston, MA 02115, USA; Center for Brains, Minds and Machines, Massachusetts Institute of Technology, Cambridge, MA 02139, USA
| | - Itzhak Fried
- Department of Neurosurgery, David Geffen School of Medicine, University of California Los Angeles, Los Angeles, CA 90095, USA; Department of Psychiatry and Biobehavioral Sciences, Jane and Terry Semel Institute for Neuroscience and Human Behavior, University of California Los Angeles, Los Angeles, CA 90095, USA; Faculty of Medicine, Tel Aviv University, Tel-Aviv 69978, Israel.
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14
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Schonhaut DR, Aghajan ZM, Kahana MJ, Fried I. A neural code for time and space in the human brain. Cell Rep 2023; 42:113238. [PMID: 37906595 DOI: 10.1016/j.celrep.2023.113238] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/20/2022] [Revised: 08/14/2023] [Accepted: 09/25/2023] [Indexed: 11/02/2023] Open
Abstract
Time and space are primary dimensions of human experience. Separate lines of investigation have identified neural correlates of time and space, yet little is known about how these representations converge during self-guided experience. Here, 10 subjects with intracranially implanted microelectrodes play a timed, virtual navigation game featuring object search and retrieval tasks separated by fixed delays. Time cells and place cells activate in parallel during timed navigation intervals, whereas a separate time cell sequence spans inter-task delays. The prevalence, firing rates, and behavioral coding strengths of time cells and place cells are indistinguishable-yet time cells selectively remap between search and retrieval tasks, while place cell responses remain stable. Thus, the brain can represent time and space as overlapping but dissociable dimensions. Time cells and place cells may constitute a biological basis for the cognitive map of spatiotemporal context onto which memories are written.
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Affiliation(s)
- Daniel R Schonhaut
- Department of Neuroscience, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA
| | - Zahra M Aghajan
- Department of Neurosurgery, David Geffen School of Medicine, University of California, Los Angeles, Los Angeles, CA 90095, USA
| | - Michael J Kahana
- Department of Psychology, University of Pennsylvania, Philadelphia, PA 19104, USA
| | - Itzhak Fried
- Department of Neurosurgery, David Geffen School of Medicine, University of California, Los Angeles, Los Angeles, CA 90095, USA; Department of Psychiatry and Biobehavioral Sciences, Semel Institute for Neuroscience and Human Behavior, University of California, Los Angeles, Los Angeles, CA 90024, USA; Faculty of Medicine, Tel-Aviv University, Tel-Aviv 69978, Israel.
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15
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Purandare C, Mehta M. Mega-scale movie-fields in the mouse visuo-hippocampal network. eLife 2023; 12:RP85069. [PMID: 37910428 PMCID: PMC10619982 DOI: 10.7554/elife.85069] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2023] Open
Abstract
Natural visual experience involves a continuous series of related images while the subject is immobile. How does the cortico-hippocampal circuit process a visual episode? The hippocampus is crucial for episodic memory, but most rodent single unit studies require spatial exploration or active engagement. Hence, we investigated neural responses to a silent movie (Allen Brain Observatory) in head-fixed mice without any task or locomotion demands, or rewards. Surprisingly, a third (33%, 3379/10263) of hippocampal -dentate gyrus, CA3, CA1 and subiculum- neurons showed movie-selectivity, with elevated firing in specific movie sub-segments, termed movie-fields, similar to the vast majority of thalamo-cortical (LGN, V1, AM-PM) neurons (97%, 6554/6785). Movie-tuning remained intact in immobile or spontaneously running mice. Visual neurons had >5 movie-fields per cell, but only ~2 in hippocampus. The movie-field durations in all brain regions spanned an unprecedented 1000-fold range: from 0.02s to 20s, termed mega-scale coding. Yet, the total duration of all the movie-fields of a cell was comparable across neurons and brain regions. The hippocampal responses thus showed greater continuous-sequence encoding than visual areas, as evidenced by fewer and broader movie-fields than in visual areas. Consistently, repeated presentation of the movie images in a fixed, but scrambled sequence virtually abolished hippocampal but not visual-cortical selectivity. The preference for continuous, compared to scrambled sequence was eight-fold greater in hippocampal than visual areas, further supporting episodic-sequence encoding. Movies could thus provide a unified way to probe neural mechanisms of episodic information processing and memory, even in immobile subjects, across brain regions, and species.
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Affiliation(s)
- Chinmay Purandare
- Department of Bioengineering, University of California, Los AngelesLos AngelesUnited States
- W.M. Keck Center for Neurophysics, Department of Physics and Astronomy, University of California, Los AngelesLos AngelesUnited States
- Department of Neurology, University of California, Los AngelesLos AngelesUnited States
| | - Mayank Mehta
- W.M. Keck Center for Neurophysics, Department of Physics and Astronomy, University of California, Los AngelesLos AngelesUnited States
- Department of Neurology, University of California, Los AngelesLos AngelesUnited States
- Department of Electrical and Computer Engineering, University of California, Los AngelesLos AngelesUnited States
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16
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Ma M, Simoes de Souza F, Futia G, Anderson S, Riguero J, Tollin D, Gentile-Polese A, Platt J, Hiratani N, Gibson EA, Restrepo D. Decision-Making Time Cells in Hippocampal Dorsal CA1. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2023:2023.10.01.560382. [PMID: 37873178 PMCID: PMC10592611 DOI: 10.1101/2023.10.01.560382] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/25/2023]
Abstract
Sequential neural dynamics encoded by "time cells" play a crucial role in hippocampal function. However, the role of hippocampal sequential neural dynamics in associative learning is an open question. In this manuscript, we used two-photon Ca2+ imaging of dorsal CA1 pyramidal neurons in head-fixed mice performing a go-no-go associative learning task. We found that pyramidal cells responded differentially to the rewarded or unrewarded stimuli. The stimuli were decoded accurately from the activity of the neuronal ensemble, and accuracy increased substantially as the animal learned to differentiate the stimuli. Decoding the stimulus from individual pyramidal cells that responded differentially revealed that decision-making took place at discrete times after stimulus presentation. Lick prediction decoded from the ensemble activity of cells in dCA1 correlated linearly with lick behavior indicating that sequential activity of pyramidal cells in dCA1 constitutes a temporal memory map used for decision-making in associative learning.
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Affiliation(s)
- M. Ma
- Department of Cell and Developmental Biology, University of Colorado Anschutz Medical Campus, Aurora, CO, 80045, USA
- These authors contributed equally to this work
| | - F. Simoes de Souza
- Department of Cell and Developmental Biology, University of Colorado Anschutz Medical Campus, Aurora, CO, 80045, USA
- Center for Mathematics, Computation and Cognition, Federal University of ABC, Sao Bernardo do Campo, SP, Brazil
- These authors contributed equally to this work
| | - G.L. Futia
- Department of Bioengineering, University of Colorado Anschutz Medical Campus, Aurora, CO, 80045, USA
| | - S.R. Anderson
- Department of Physiology and Biophysics, University of Colorado Anschutz Medical Campus, Aurora, CO, 80045, USA
| | - J. Riguero
- Department of Physiology and Biophysics, University of Colorado Anschutz Medical Campus, Aurora, CO, 80045, USA
- Neuroscience Graduate Program, University of Colorado Anschutz Medical Campus, Aurora, CO 80045, USA
| | - D. Tollin
- Department of Physiology and Biophysics, University of Colorado Anschutz Medical Campus, Aurora, CO, 80045, USA
- Neuroscience Graduate Program, University of Colorado Anschutz Medical Campus, Aurora, CO 80045, USA
| | - A. Gentile-Polese
- Department of Cell and Developmental Biology, University of Colorado Anschutz Medical Campus, Aurora, CO, 80045, USA
| | - J.P. Platt
- Department of Neurosurgery, University of Colorado Anschutz Medical Campus, Aurora, CO, 80045, USA
| | - N. Hiratani
- Department of Neuroscience, Washington University, St. Louis, MO 63110, USA
| | - E. A. Gibson
- Department of Bioengineering, University of Colorado Anschutz Medical Campus, Aurora, CO, 80045, USA
- Neuroscience Graduate Program, University of Colorado Anschutz Medical Campus, Aurora, CO 80045, USA
| | - D. Restrepo
- Department of Cell and Developmental Biology, University of Colorado Anschutz Medical Campus, Aurora, CO, 80045, USA
- Neuroscience Graduate Program, University of Colorado Anschutz Medical Campus, Aurora, CO 80045, USA
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17
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Chen R, Vakilna YS, Lassers SB, Tang WC, Brewer G. Hippocampal network axons respond to patterned theta burst stimulation with lower activity of initially higher spike train similarity from EC to DG and later similarity of axons from CA1 to EC. J Neural Eng 2023; 20:056004. [PMID: 37666242 DOI: 10.1088/1741-2552/acf68a] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/24/2023] [Accepted: 09/04/2023] [Indexed: 09/06/2023]
Abstract
Objective. Decoding memory functions for each hippocampal subregion involves extensive understanding of how each hippocampal subnetwork processes input stimuli. Theta burst stimulation (TBS) recapitulates natural brain stimuli which potentiates synapses in hippocampal circuits. TBS is typically applied to a bundle of axons to measure the immediate response in a downstream subregion like the cornu ammonis 1 (CA1). Yet little is known about network processing in response to stimulation, especially because individual axonal transmission between subregions is not accessible.Approach. To address these limitations, we reverse engineered the hippocampal network on a micro-electrode array partitioned by a MEMS four-chambered device with interconnecting microfluidic tunnels. The micro tunnels allowed monitoring single axon transmission which is inaccessible in slices orin vivo. The four chambers were plated separately with entorhinal cortex (EC), dentate gyrus (DG), CA1, and CA3 neurons. The patterned TBS was delivered to the EC hippocampal gateway. Evoked spike pattern similarity in each subregions was quantified with Jaccard distance metrics of spike timing.Main results. We found that the network subregion produced unique axonal responses to different stimulation patterns. Single site and multisite stimulations caused distinct information routing of axonal spikes in the network. The most spatially similar output at axons from CA3 to CA1 reflected the auto association within CA3 recurrent networks. Moreover, the spike pattern similarities shifted from high levels for axons to and from DG at 0.2 s repeat stimuli to greater similarity in axons to and from CA1 for repetitions at 10 s intervals. This time-dependent response suggested that CA3 encoded temporal information and axons transmitted the information to CA1.Significance. Our design and interrogation approach provide first insights into differences in information transmission between the four subregions of the structured hippocampal network and the dynamic pattern variations in response to stimulation at the subregional level to achieve probabilistic pattern separation and novelty detection.
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Affiliation(s)
- Ruiyi Chen
- Department of Biomedical Engineering, University of California, Irvine, CA 92697, United States of America
| | - Yash Shashank Vakilna
- Department of Biomedical Engineering, University of California, Irvine, CA 92697, United States of America
- Texas Institute of Restorative Neurotechnologies (TIRN), The University of Texas Health Science Center (UTHealth), Houston, TX 77030, United States of America
| | - Samuel Brandon Lassers
- Department of Biomedical Engineering, University of California, Irvine, CA 92697, United States of America
| | - William C Tang
- Department of Biomedical Engineering, University of California, Irvine, CA 92697, United States of America
- Department of Biomedical Engineering, National Taiwan University, Taipei 106319, Taiwan (ROC)
| | - Gregory Brewer
- Department of Biomedical Engineering, University of California, Irvine, CA 92697, United States of America
- Center for Neuroscience of Learning and Memory & MIND Center, University of California, Irvine, CA 92697, United States of America
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18
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Savelli F. Spontaneous dynamics of hippocampal place fields in a model of combinatorial competition among stable inputs. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2023:2023.09.04.556254. [PMID: 37732194 PMCID: PMC10508775 DOI: 10.1101/2023.09.04.556254] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 09/22/2023]
Abstract
We present computer simulations illustrating how the plastic integration of spatially stable inputs could contribute to the dynamic character of hippocampal spatial representations. In novel environments of slightly larger size than typical apparatus, the emergence of well-defined place fields in real place cells seems to rely on inputs from normally functioning grid cells. Theoretically, the grid-to-place transformation is possible if a place cell is able to respond selectively to a combination of suitably aligned grids. We previously identified the functional characteristics that allow a synaptic plasticity rule to accomplish this selection by synaptic competition during rat foraging behavior. Here, we show that the synaptic competition can outlast the formation of place fields, contributing to their spatial reorganization over time, when the model is run in larger environments and the topographical/modular organization of grid inputs is taken into account. Co-simulated cells that differ only by their randomly assigned grid inputs display different degrees and kinds of spatial reorganization-ranging from place-field remapping to more subtle in-field changes or lapses in firing. The model predicts a greater number of place fields and propensity for remapping in place cells recorded from more septal regions of the hippocampus and/or in larger environments, motivating future experimental standardization across studies and animal models. In sum, spontaneous remapping could arise from rapid synaptic learning involving inputs that are functionally homogeneous, spatially stable, and minimally stochastic. Significance Statement In both AI and theoretical neuroscience, learning systems often rely on the asymptotic convergence of slow-acting learning rules applied to input spaces that are presumed to be sampled repeatedly, for example over developmental timescales. Place cells of the hippocampus testify to a neural system capable of rapidly encoding cognitive variables-such as the animal's position in space-from limited experience. These internal representations undergo "spontaneous" changes over time, spurring much interest in their cognitive significance and underlying mechanisms. We investigate a model suggesting that some of these changes could be a tradeoff of rapid learning.
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19
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Robinson JC, Wilmot JH, Hasselmo ME. Septo-hippocampal dynamics and the encoding of space and time. Trends Neurosci 2023; 46:712-725. [PMID: 37479632 PMCID: PMC10538955 DOI: 10.1016/j.tins.2023.06.004] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/18/2023] [Revised: 05/12/2023] [Accepted: 06/27/2023] [Indexed: 07/23/2023]
Abstract
Encoding an event in memory requires neural activity to represent multiple dimensions of behavioral experience in space and time. Recent experiments have explored the influence of neural dynamics regulated by the medial septum on the functional encoding of space and time by neurons in the hippocampus and associated structures. This review addresses these dynamics, focusing on the role of theta rhythm, the differential effects of septal inactivation and activation on the functional coding of space and time by individual neurons, and the influence on phase coding that appears as phase precession. We also discuss data indicating that theta rhythm plays a role in timing the internal dynamics of memory encoding and retrieval, as well as the behavioral influences of these neuronal manipulations with regard to memory function.
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Affiliation(s)
- Jennifer C Robinson
- Center for Systems Neuroscience, Boston University, 610 Commonwealth Avenue, Boston, MA 02215, USA.
| | - Jacob H Wilmot
- Center for Systems Neuroscience, Boston University, 610 Commonwealth Avenue, Boston, MA 02215, USA.
| | - Michael E Hasselmo
- Center for Systems Neuroscience, Boston University, 610 Commonwealth Avenue, Boston, MA 02215, USA.
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20
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Zou F, Wanjia G, Allen EJ, Wu Y, Charest I, Naselaris T, Kay K, Kuhl BA, Hutchinson JB, DuBrow S. Re-expression of CA1 and entorhinal activity patterns preserves temporal context memory at long timescales. Nat Commun 2023; 14:4350. [PMID: 37468489 DOI: 10.1038/s41467-023-40100-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/15/2022] [Accepted: 07/13/2023] [Indexed: 07/21/2023] Open
Abstract
Converging, cross-species evidence indicates that memory for time is supported by hippocampal area CA1 and entorhinal cortex. However, limited evidence characterizes how these regions preserve temporal memories over long timescales (e.g., months). At long timescales, memoranda may be encountered in multiple temporal contexts, potentially creating interference. Here, using 7T fMRI, we measured CA1 and entorhinal activity patterns as human participants viewed thousands of natural scene images distributed, and repeated, across many months. We show that memory for an image's original temporal context was predicted by the degree to which CA1/entorhinal activity patterns from the first encounter with an image were re-expressed during re-encounters occurring minutes to months later. Critically, temporal memory signals were dissociable from predictors of recognition confidence, which were carried by distinct medial temporal lobe expressions. These findings suggest that CA1 and entorhinal cortex preserve temporal memories across long timescales by coding for and reinstating temporal context information.
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Affiliation(s)
- Futing Zou
- Department of Psychology, University of Oregon, Eugene, OR, USA.
| | - Guo Wanjia
- Department of Psychology, University of Oregon, Eugene, OR, USA
| | - Emily J Allen
- Center for Magnetic Resonance Research, Department of Radiology, University of Minnesota, Minneapolis, MN, USA
| | - Yihan Wu
- Graduate Program in Cognitive Science, University of Minnesota, Minneapolis, MN, USA
| | - Ian Charest
- Department of Psychology, University of Montreal, Montreal, QC, Canada
| | - Thomas Naselaris
- Department of Neuroscience, University of Minnesota, Minneapolis, MN, USA
| | - Kendrick Kay
- Center for Magnetic Resonance Research, Department of Radiology, University of Minnesota, Minneapolis, MN, USA
| | - Brice A Kuhl
- Department of Psychology, University of Oregon, Eugene, OR, USA
- Institute of Neuroscience, University of Oregon, Eugene, OR, USA
| | | | - Sarah DuBrow
- Department of Psychology, University of Oregon, Eugene, OR, USA
- Institute of Neuroscience, University of Oregon, Eugene, OR, USA
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21
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Geva N, Deitch D, Rubin A, Ziv Y. Time and experience differentially affect distinct aspects of hippocampal representational drift. Neuron 2023:S0896-6273(23)00378-1. [PMID: 37315556 DOI: 10.1016/j.neuron.2023.05.005] [Citation(s) in RCA: 22] [Impact Index Per Article: 22.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/22/2022] [Revised: 02/22/2023] [Accepted: 05/08/2023] [Indexed: 06/16/2023]
Abstract
Hippocampal activity is critical for spatial memory. Within a fixed, familiar environment, hippocampal codes gradually change over timescales of days to weeks-a phenomenon known as representational drift. The passage of time and the amount of experience are two factors that profoundly affect memory. However, thus far, it has remained unclear to what extent these factors drive hippocampal representational drift. Here, we longitudinally recorded large populations of hippocampal neurons in mice while they repeatedly explored two different familiar environments that they visited at different time intervals over weeks. We found that time and experience differentially affected distinct aspects of representational drift: the passage of time drove changes in neuronal activity rates, whereas experience drove changes in the cells' spatial tuning. Changes in spatial tuning were context specific and largely independent of changes in activity rates. Thus, our results suggest that representational drift is a multi-faceted process governed by distinct neuronal mechanisms.
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Affiliation(s)
- Nitzan Geva
- Department of Brain Sciences, Weizmann Institute of Science, Rehovot, Israel
| | - Daniel Deitch
- Department of Brain Sciences, Weizmann Institute of Science, Rehovot, Israel
| | - Alon Rubin
- Department of Brain Sciences, Weizmann Institute of Science, Rehovot, Israel.
| | - Yaniv Ziv
- Department of Brain Sciences, Weizmann Institute of Science, Rehovot, Israel.
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22
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Moore JJ, Rashid SK, Johnson CD, Codrington N, Chklovskii DB, Basu J. Sub-cellular population imaging tools reveal stable apical dendrites in hippocampal area CA3. RESEARCH SQUARE 2023:rs.3.rs-2733660. [PMID: 37131789 PMCID: PMC10153397 DOI: 10.21203/rs.3.rs-2733660/v1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/04/2023]
Abstract
Anatomically segregated apical and basal dendrites of pyramidal neurons receive functionally distinct inputs, but it is unknown if this results in compartment-level functional diversity during behavior. Here we imaged calcium signals from apical dendrites, soma, and basal dendrites of pyramidal neurons in area CA3 of mouse hippocampus during head-fixed navigation. To examine dendritic population activity, we developed computational tools to identify dendritic regions of interest and extract accurate fluorescence traces. We identified robust spatial tuning in apical and basal dendrites, similar to soma, though basal dendrites had reduced activity rates and place field widths. Across days, apical dendrites were more stable than soma or basal dendrites, resulting in better decoding of the animal's position. These population-level dendritic differences may reflect functionally distinct input streams leading to different dendritic computations in CA3. These tools will facilitate future studies of signal transformations between cellular compartments and their relation to behavior.
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Affiliation(s)
- Jason J Moore
- Neuroscience Institute, New York University Langone Health, New York, NY 10016, USA
- Center for Computational Neuroscience, Flatiron Institute, Simons Foundation, New York, NY 10010, USA
| | - Shannon K Rashid
- Neuroscience Institute, New York University Langone Health, New York, NY 10016, USA
| | - Cara D. Johnson
- Neuroscience Institute, New York University Langone Health, New York, NY 10016, USA
| | - Naomi Codrington
- Neuroscience Institute, New York University Langone Health, New York, NY 10016, USA
| | - Dmitri B Chklovskii
- Neuroscience Institute, New York University Langone Health, New York, NY 10016, USA
- Center for Computational Neuroscience, Flatiron Institute, Simons Foundation, New York, NY 10010, USA
| | - Jayeeta Basu
- Neuroscience Institute, New York University Langone Health, New York, NY 10016, USA
- Department of Neuroscience and Physiology, New York University Grossman School of Medicine, New York, NY 10016, USA
- Department of Psychiatry, New York University Grossman School of Medicine, New York, NY 10016, USA
- Center for Neural Science, New York University, New York, NY 10003, USA
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23
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Heldman R, Pang D, Zhao X, Wang Y. A CA1 circuit motif that signals the start of information integration. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2023:2023.03.12.532295. [PMID: 36993346 PMCID: PMC10054991 DOI: 10.1101/2023.03.12.532295] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/19/2023]
Abstract
Integrating information from the recent past is critical for guiding predictions and shaping behavior. The process of integrating information, such as tracking distance traveled or time elapsed, begins with establishing a starting point. Yet, the mechanisms by which neural circuits utilize relevant cues to initiate integration remain unknown. Our study sheds light on this question by identifying a subpopulation of CA1 pyramidal neurons called PyrDown. These neurons shut down their activity at the beginning of distance or time integration and then gradually ramp up their firing as the animal approaches the reward. PyrDown neurons provide a mechanism for representing integrated information through ramping activity, complementing the well-known place/time cells that respond to specific distances or time points. Our findings also reveal that parvalbumin inhibitory interneurons mediate the shutdown of PyrDown neurons, uncovering a circuit motif that enables the initiation of subsequent information integration to improve future predictions.
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24
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Ananthamurthy KG, Bhalla US. Synthetic Data Resource and Benchmarks for Time Cell Analysis and Detection Algorithms. eNeuro 2023; 10:ENEURO.0007-22.2023. [PMID: 36823166 PMCID: PMC10027052 DOI: 10.1523/eneuro.0007-22.2023] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/02/2022] [Revised: 11/21/2022] [Accepted: 02/09/2023] [Indexed: 02/25/2023] Open
Abstract
Hippocampal CA1 cells take part in reliable, time-locked activity sequences in tasks that involve an association between temporally separated stimuli, in a manner that tiles the interval between the stimuli. Such cells have been termed time cells. Here, we adopt a first-principles approach to comparing diverse analysis and detection algorithms for identifying time cells. We generated synthetic activity datasets using calcium signals recorded in vivo from the mouse hippocampus using two-photon (2-P) imaging, as template response waveforms. We assigned known, ground truth values to perturbations applied to perfect activity signals, including noise, calcium event width, timing imprecision, hit trial ratio and background (untuned) activity. We tested a range of published and new algorithms and their variants on this dataset. We find that most algorithms correctly classify over 80% of cells, but have different balances between true and false positives, and different sensitivity to the five categories of perturbation. Reassuringly, most methods are reasonably robust to perturbations, including background activity, and show good concordance in classification of time cells. The same algorithms were also used to analyze and identify time cells in experimental physiology datasets recorded in vivo and most show good concordance.
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Affiliation(s)
- Kambadur G Ananthamurthy
- National Centre for Biological Sciences - Tata Institute of Fundamental Research, Bellary Road, Bengaluru - 560065, Karnataka, India
| | - Upinder S Bhalla
- National Centre for Biological Sciences - Tata Institute of Fundamental Research, Bellary Road, Bengaluru - 560065, Karnataka, India
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25
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Lee SLT, Timmerman B, Pflomm R, Roy N, Kumar M, Markus EJ. Sequential order spatial memory in male rats: Characteristics and impact of medial prefrontal cortex and hippocampus disruption. Neurobiol Learn Mem 2023; 200:107739. [PMID: 36822465 DOI: 10.1016/j.nlm.2023.107739] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/10/2021] [Revised: 11/25/2022] [Accepted: 02/16/2023] [Indexed: 02/25/2023]
Abstract
Remembering an experience entails linking what happened, where the event transpired, and when it occurred. Most rodent hippocampal studies involve tests of spatial memory, but fewer investigate temporal and sequential order memory. Here we provide a demonstration of rats learning an aversive sequential order task using a radial arm water maze. Male rats learned a fixed sequence of up to seven spatial locations, with each decision session separated by a temporal delay. Rats relied on visuospatial cues and the number of times they had entered the maze for a given day in order to successfully perform the task. Behavioral patterns during asymptotic performance showed similarities to the serial-position effect, especially with regards to faster first choice latency. Rats at asymptotic performance were implanted with bilateral cannula in medial prefrontal cortex, dorsal, and ventral hippocampus. After re-training, we injected muscimol to temporarily disrupt targeted brain regions. While control rats made prospective errors, rats with mPFC muscimol exhibited more retrospective errors. Rats with hippocampal muscimol no longer exhibited a prospective bias and were at chance levels in their error choices. Taken together, our results suggest disruption of mPFC, but not the hippocampus, produced an error choice bias during an aversive sequential order spatial processing task.
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Affiliation(s)
- Shang Lin Tommy Lee
- Division of Behavioral Neuroscience, Department of Psychological Sciences, University of Connecticut, Storrs, CT 06269, USA
| | - Brian Timmerman
- Division of Behavioral Neuroscience, Department of Psychological Sciences, University of Connecticut, Storrs, CT 06269, USA
| | - Riley Pflomm
- Division of Behavioral Neuroscience, Department of Psychological Sciences, University of Connecticut, Storrs, CT 06269, USA
| | - Nikita Roy
- Division of Behavioral Neuroscience, Department of Psychological Sciences, University of Connecticut, Storrs, CT 06269, USA
| | - Mahathi Kumar
- Division of Behavioral Neuroscience, Department of Psychological Sciences, University of Connecticut, Storrs, CT 06269, USA
| | - Etan J Markus
- Division of Behavioral Neuroscience, Department of Psychological Sciences, University of Connecticut, Storrs, CT 06269, USA.
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26
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Guo C, Wang A, Cheng H, Chen L. New imaging instrument in animal models: Two-photon miniature microscope and large field of view miniature microscope for freely behaving animals. J Neurochem 2023; 164:270-283. [PMID: 36281555 DOI: 10.1111/jnc.15711] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/16/2022] [Revised: 09/19/2022] [Accepted: 10/12/2022] [Indexed: 11/30/2022]
Abstract
Over the past decade, novel optical imaging tools have been developed for imaging neuronal activities along with the evolution of fluorescence indicators with brighter expression and higher sensitivity. Miniature microscopes, as revolutionary approaches, enable the imaging of large populations of neuron ensembles in freely behaving rodents and mammals, which allows exploring the neural basis of behaviors. Recent progress in two-photon miniature microscopes and mesoscale single-photon miniature microscopes further expand those affordable methods to navigate neural activities during naturalistic behaviors. In this review article, two-photon miniature microscopy techniques are summarized historically from the first documented attempt to the latest ones, and comparisons are made. The driving force behind and their potential for neuroscientific inquiries are also discussed. Current progress in terms of the mesoscale, i.e., the large field-of-view miniature microscopy technique, is addressed as well. Then, pipelines for registering single cells from the data of two-photon and large field-of-view miniature microscopes are discussed. Finally, we present the potential evolution of the techniques.
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Affiliation(s)
- Changliang Guo
- Beijing Institute of Collaborative Innovation, Beijing, China.,State Key Laboratory of Membrane Biology, Institute of Molecular Medicine, Peking-Tsinghua Center for Life Sciences, College of Future Technology, Peking University, Beijing, China
| | - Aimin Wang
- School of Electronics, Peking University, Beijing, China.,State Key Laboratory of Advanced Optical Communication System and Networks, Peking University, Beijing, China
| | - Heping Cheng
- State Key Laboratory of Membrane Biology, Institute of Molecular Medicine, Peking-Tsinghua Center for Life Sciences, College of Future Technology, Peking University, Beijing, China.,Research Unit of Mitochondria in Brain Diseases, Chinese Academy of Medical Sciences, PKU-Nanjing Institute of Translational Medicine, Nanjing, China
| | - Liangyi Chen
- State Key Laboratory of Membrane Biology, Institute of Molecular Medicine, Peking-Tsinghua Center for Life Sciences, College of Future Technology, Peking University, Beijing, China.,PKU-IDG/McGovern Institute for Brain Research, Beijing, China.,Beijing Academy of Artificial Intelligence, Beijing, China
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27
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Omer DB, Las L, Ulanovsky N. Contextual and pure time coding for self and other in the hippocampus. Nat Neurosci 2023; 26:285-294. [PMID: 36585486 DOI: 10.1038/s41593-022-01226-y] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/10/2022] [Accepted: 10/31/2022] [Indexed: 12/31/2022]
Abstract
Navigation and episodic memory depend critically on representing temporal sequences. Hippocampal 'time cells' form temporal sequences, but it is unknown whether they represent context-dependent experience or time per se. Here we report on time cells in bat hippocampal area CA1, which, surprisingly, formed two distinct populations. One population of time cells generated different temporal sequences when the bat hung at different locations, thus conjunctively encoding spatial context and time-'contextual time cells'. A second population exhibited similar preferred times across different spatial contexts, thus purely encoding elapsed time. When examining neural responses after the landing moment of another bat, in a social imitation task, we found time cells that encoded temporal sequences aligned to the other's landing. We propose that these diverse time codes may support the perception of interval timing, episodic memory and temporal coordination between self and others.
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Affiliation(s)
- David B Omer
- Department of Brain Sciences, Weizmann Institute of Science, Rehovot, Israel.
- Edmond and Lily Safra Center for Brain Sciences, Hebrew University of Jerusalem, Jerusalem, Israel.
| | - Liora Las
- Department of Brain Sciences, Weizmann Institute of Science, Rehovot, Israel
| | - Nachum Ulanovsky
- Department of Brain Sciences, Weizmann Institute of Science, Rehovot, Israel.
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28
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Wirtshafter HS, Disterhoft JF. Place cells are nonrandomly clustered by field location in CA1 hippocampus. Hippocampus 2023; 33:65-84. [PMID: 36519700 PMCID: PMC9877199 DOI: 10.1002/hipo.23489] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/17/2022] [Revised: 11/26/2022] [Accepted: 12/04/2022] [Indexed: 12/23/2022]
Abstract
A challenge in both modern and historic neuroscience has been achieving an understanding of neuron circuits, and determining the computational and organizational principles that underlie these circuits. Deeper understanding of the organization of brain circuits and cell types, including in the hippocampus, is required for advances in behavioral and cognitive neuroscience, as well as for understanding principles governing brain development and evolution. In this manuscript, we pioneer a new method to analyze the spatial clustering of active neurons in the hippocampus. We use calcium imaging and a rewarded navigation task to record from 100 s of place cells in the CA1 of freely moving rats. We then use statistical techniques developed for and in widespread use in geographic mapping studies, global Moran's I, and local Moran's I to demonstrate that cells that code for similar spatial locations tend to form small spatial clusters. We present evidence that this clustering is not the result of artifacts from calcium imaging, and show that these clusters are primarily formed by cells that have place fields around previously rewarded locations. We go on to show that, although cells with similar place fields tend to form clusters, there is no obvious topographic mapping of environmental location onto the hippocampus, such as seen in the visual cortex. Insights into hippocampal organization, as in this study, can elucidate mechanisms underlying motivational behaviors, spatial navigation, and memory formation.
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Affiliation(s)
- Hannah S. Wirtshafter
- Department of Neuroscience, Northwestern University Feinberg School of Medicine, 310 E. Superior St., Morton 5-660, Chicago, IL 60611
| | - John F. Disterhoft
- Department of Neuroscience, Northwestern University Feinberg School of Medicine, 310 E. Superior St., Morton 5-660, Chicago, IL 60611
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29
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Wang J, Tambini A, Lapate RC. The tie that binds: temporal coding and adaptive emotion. Trends Cogn Sci 2022; 26:1103-1118. [PMID: 36302710 DOI: 10.1016/j.tics.2022.09.005] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/12/2022] [Revised: 09/01/2022] [Accepted: 09/07/2022] [Indexed: 11/11/2022]
Abstract
Emotions are temporally dynamic, but the persistence of emotions outside of their appropriate temporal context is detrimental to health and well-being. Yet, precisely how temporal coding and emotional processing interact remains unclear. Recently unveiled temporal context representations in the hippocampus, entorhinal cortex (EC), and prefrontal cortex (PFC) support memory for what happened when. Here, we discuss how these neural temporal representations may interact with densely interconnected amygdala circuitry to shape emotional functioning. We propose a neuroanatomically informed framework suggesting that high-fidelity temporal representations linked to dynamic experiences promote emotion regulation and adaptive emotional memories. Then, we discuss how newly-identified synaptic and molecular features of amygdala-hippocampal projections suggest that intense, amygdala-dependent emotional responses may distort temporal-coding mechanisms. We conclude by identifying key avenues for future research.
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Affiliation(s)
- Jingyi Wang
- Department of Psychological & Brain Sciences, University of California, Santa Barbara, Santa Barbara, CA 93106, USA
| | - Arielle Tambini
- Center for Biomedical Imaging and Neuromodulation, Nathan Kline Institute for Psychiatric Research, Orangeburg, NY 10962, USA
| | - Regina C Lapate
- Department of Psychological & Brain Sciences, University of California, Santa Barbara, Santa Barbara, CA 93106, USA.
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30
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Lamothe-Molina PJ, Franzelin A, Beck L, Li D, Auksutat L, Fieblinger T, Laprell L, Alhbeck J, Gee CE, Kneussel M, Engel AK, Hilgetag CC, Morellini F, Oertner TG. ΔFosB accumulation in hippocampal granule cells drives cFos pattern separation during spatial learning. Nat Commun 2022; 13:6376. [PMID: 36289226 PMCID: PMC9606265 DOI: 10.1038/s41467-022-33947-w] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/09/2020] [Accepted: 10/07/2022] [Indexed: 12/25/2022] Open
Abstract
Mice display signs of fear when neurons that express cFos during fear conditioning are artificially reactivated. This finding gave rise to the notion that cFos marks neurons that encode specific memories. Here we show that cFos expression patterns in the mouse dentate gyrus (DG) change dramatically from day to day in a water maze spatial learning paradigm, regardless of training level. Optogenetic inhibition of neurons that expressed cFos on the first training day affected performance days later, suggesting that these neurons continue to be important for spatial memory recall. The mechanism preventing repeated cFos expression in DG granule cells involves accumulation of ΔFosB, a long-lived splice variant of FosB. CA1 neurons, in contrast, repeatedly expressed cFos. Thus, cFos-expressing granule cells may encode new features being added to the internal representation during the last training session. This form of timestamping is thought to be required for the formation of episodic memories.
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Affiliation(s)
- Paul J. Lamothe-Molina
- grid.13648.380000 0001 2180 3484Institute for Synaptic Physiology, Center for Molecular Neurobiology (ZMNH), University Medical Center Hamburg-Eppendorf, Hamburg, Germany
| | - Andreas Franzelin
- grid.13648.380000 0001 2180 3484Institute for Synaptic Physiology, Center for Molecular Neurobiology (ZMNH), University Medical Center Hamburg-Eppendorf, Hamburg, Germany
| | - Lennart Beck
- grid.13648.380000 0001 2180 3484Institute for Synaptic Physiology, Center for Molecular Neurobiology (ZMNH), University Medical Center Hamburg-Eppendorf, Hamburg, Germany
| | - Dong Li
- grid.13648.380000 0001 2180 3484Institute of Computational Neuroscience, University Medical Center Hamburg-Eppendorf, Hamburg, Germany
| | - Lea Auksutat
- grid.13648.380000 0001 2180 3484Research Group Behavioral Biology, Center for Molecular Neurobiology (ZMNH), University Medical Center Hamburg-Eppendorf, Hamburg, Germany
| | - Tim Fieblinger
- grid.13648.380000 0001 2180 3484Institute for Synaptic Physiology, Center for Molecular Neurobiology (ZMNH), University Medical Center Hamburg-Eppendorf, Hamburg, Germany
| | - Laura Laprell
- grid.13648.380000 0001 2180 3484Institute for Synaptic Physiology, Center for Molecular Neurobiology (ZMNH), University Medical Center Hamburg-Eppendorf, Hamburg, Germany
| | - Joachim Alhbeck
- grid.13648.380000 0001 2180 3484Department of Neurophysiology and Pathophysiology, Center for Experimental Medicine (ZEM), University Medical Center Hamburg-Eppendorf, Hamburg, Germany
| | - Christine E. Gee
- grid.13648.380000 0001 2180 3484Institute for Synaptic Physiology, Center for Molecular Neurobiology (ZMNH), University Medical Center Hamburg-Eppendorf, Hamburg, Germany
| | - Matthias Kneussel
- grid.13648.380000 0001 2180 3484Institute for Molecular Neurogenetics, Center for Molecular Neurobiology (ZMNH), University Medical Center Hamburg-Eppendorf, Hamburg, Germany
| | - Andreas K. Engel
- grid.13648.380000 0001 2180 3484Department of Neurophysiology and Pathophysiology, Center for Experimental Medicine (ZEM), University Medical Center Hamburg-Eppendorf, Hamburg, Germany
| | - Claus C. Hilgetag
- grid.13648.380000 0001 2180 3484Institute of Computational Neuroscience, University Medical Center Hamburg-Eppendorf, Hamburg, Germany
| | - Fabio Morellini
- grid.13648.380000 0001 2180 3484Research Group Behavioral Biology, Center for Molecular Neurobiology (ZMNH), University Medical Center Hamburg-Eppendorf, Hamburg, Germany
| | - Thomas G. Oertner
- grid.13648.380000 0001 2180 3484Institute for Synaptic Physiology, Center for Molecular Neurobiology (ZMNH), University Medical Center Hamburg-Eppendorf, Hamburg, Germany
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31
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Umbach G, Tan R, Jacobs J, Pfeiffer BE, Lega B. Flexibility of functional neuronal assemblies supports human memory. Nat Commun 2022; 13:6162. [PMID: 36257934 PMCID: PMC9579146 DOI: 10.1038/s41467-022-33587-0] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/01/2021] [Accepted: 09/22/2022] [Indexed: 12/24/2022] Open
Abstract
Episodic memories, or consciously accessible memories of unique events, represent a key aspect of human cognition. Evidence from rodent models suggests that the neural representation of these complex memories requires cooperative firing of groups of neurons on short time scales, organized by gamma oscillations. These co-firing groups, termed "neuronal assemblies," represent a fundamental neurophysiological unit supporting memory. Using microelectrode data from neurosurgical patients, we identify neuronal assemblies in the human MTL and show that they exhibit consistent organization in their firing pattern based on gamma phase information. We connect these properties to memory performance across recording sessions. Finally, we describe how human neuronal assemblies flexibly adjust over longer time scales. Our findings provide key evidence linking assemblies to human episodic memory for the first time.
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Affiliation(s)
- Gray Umbach
- Department of Neurological Surgery, University of California San Francisco, San Francisco, CA, 94143, USA
| | - Ryan Tan
- Department of Neurological Surgery, University of Texas Southwestern, Dallas, TX, 75235, USA
| | - Joshua Jacobs
- Department of Biomedical Engineering, Columbia University, New York, NY, 10027, USA
| | - Brad E Pfeiffer
- Department of Neuroscience, University of Texas Southwestern, Dallas, TX, 75235, USA
| | - Bradley Lega
- Department of Neurological Surgery, University of Texas Southwestern, Dallas, TX, 75235, USA.
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32
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Zaki Y, Mau W, Cincotta C, Monasterio A, Odom E, Doucette E, Grella SL, Merfeld E, Shpokayte M, Ramirez S. Hippocampus and amygdala fear memory engrams re-emerge after contextual fear relapse. Neuropsychopharmacology 2022; 47:1992-2001. [PMID: 35941286 PMCID: PMC9485238 DOI: 10.1038/s41386-022-01407-0] [Citation(s) in RCA: 20] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 04/20/2022] [Revised: 06/17/2022] [Accepted: 07/16/2022] [Indexed: 11/09/2022]
Abstract
The formation and extinction of fear memories represent two forms of learning that each engage the hippocampus and amygdala. How cell populations in these areas contribute to fear relapse, however, remains unclear. Here, we demonstrate that, in male mice, cells active during fear conditioning in the dentate gyrus of hippocampus exhibit decreased activity during extinction and are re-engaged after contextual fear relapse. In vivo calcium imaging reveals that relapse drives population dynamics in the basolateral amygdala to revert to a network state similar to the state present during fear conditioning. Finally, we find that optogenetic inactivation of neuronal ensembles active during fear conditioning in either the hippocampus or amygdala is sufficient to disrupt fear expression after relapse, while optogenetic stimulation of these same ensembles after extinction is insufficient to artificially mimic fear relapse. These results suggest that fear relapse triggers a partial re-emergence of the original fear memory representation, providing new insight into the neural substrates of fear relapse.
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Affiliation(s)
- Yosif Zaki
- Department of Neuroscience, Icahn School of Medicine at Mount Sinai, New York, NY, 10029, USA
| | - William Mau
- Department of Neuroscience, Icahn School of Medicine at Mount Sinai, New York, NY, 10029, USA
| | - Christine Cincotta
- Department of Psychological and Brain Sciences, Boston University, Boston, MA, 02215, USA
| | - Amy Monasterio
- Department of Psychological and Brain Sciences, Boston University, Boston, MA, 02215, USA
| | - Emma Odom
- Department of Psychological and Brain Sciences, Boston University, Boston, MA, 02215, USA
| | - Emily Doucette
- Department of Psychological and Brain Sciences, Boston University, Boston, MA, 02215, USA
| | - Stephanie L Grella
- Department of Psychological and Brain Sciences, Boston University, Boston, MA, 02215, USA
| | - Emily Merfeld
- Department of Psychological and Brain Sciences, Boston University, Boston, MA, 02215, USA
| | - Monika Shpokayte
- Department of Psychological and Brain Sciences, Boston University, Boston, MA, 02215, USA
| | - Steve Ramirez
- Department of Psychological and Brain Sciences, Boston University, Boston, MA, 02215, USA.
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33
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Tsao A, Yousefzadeh SA, Meck WH, Moser MB, Moser EI. The neural bases for timing of durations. Nat Rev Neurosci 2022; 23:646-665. [PMID: 36097049 DOI: 10.1038/s41583-022-00623-3] [Citation(s) in RCA: 16] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 07/19/2022] [Indexed: 11/10/2022]
Abstract
Durations are defined by a beginning and an end, and a major distinction is drawn between durations that start in the present and end in the future ('prospective timing') and durations that start in the past and end either in the past or the present ('retrospective timing'). Different psychological processes are thought to be engaged in each of these cases. The former is thought to engage a clock-like mechanism that accurately tracks the continuing passage of time, whereas the latter is thought to engage a reconstructive process that utilizes both temporal and non-temporal information from the memory of past events. We propose that, from a biological perspective, these two forms of duration 'estimation' are supported by computational processes that are both reliant on population state dynamics but are nevertheless distinct. Prospective timing is effectively carried out in a single step where the ongoing dynamics of population activity directly serve as the computation of duration, whereas retrospective timing is carried out in two steps: the initial generation of population state dynamics through the process of event segmentation and the subsequent computation of duration utilizing the memory of those dynamics.
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Affiliation(s)
- Albert Tsao
- Department of Biology, Stanford University, Stanford, CA, USA.
| | | | - Warren H Meck
- Department of Psychology and Neuroscience, Duke University, Durham, NC, USA
| | - May-Britt Moser
- Centre for Neural Computation, Kavli Institute for Systems Neuroscience, Norwegian University of Science and Technology, Trondheim, Norway
| | - Edvard I Moser
- Centre for Neural Computation, Kavli Institute for Systems Neuroscience, Norwegian University of Science and Technology, Trondheim, Norway.
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34
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Ning W, Bladon JH, Hasselmo ME. Complementary representations of time in the prefrontal cortex and hippocampus. Hippocampus 2022; 32:577-596. [PMID: 35822589 PMCID: PMC9444055 DOI: 10.1002/hipo.23451] [Citation(s) in RCA: 14] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/17/2021] [Revised: 05/29/2022] [Accepted: 06/08/2022] [Indexed: 11/09/2022]
Abstract
Episodic memory binds the spatial and temporal relationships between the elements of experience. The hippocampus encodes space through place cells that fire at specific spatial locations. Similarly, time cells fire sequentially at specific time points within a temporally organized experience. Recent studies in rodents, monkeys, and humans have identified time cells with discrete firing fields and cells with monotonically changing activity in supporting the temporal organization of events across multiple timescales. Using in vivo electrophysiological tetrode recordings, we simultaneously recorded neurons from the prefrontal cortex and dorsal CA1 of the hippocampus while rats performed a delayed match to sample task. During the treadmill mnemonic delay, hippocampal time cells exhibited sparser firing fields with decreasing resolution over time, consistent with previous results. In comparison, temporally modulated cells in the prefrontal cortex showed more monotonically changing firing rates, ramping up or decaying with the passage of time, and exhibited greater temporal precision for Bayesian decoding of time at long time lags. These time cells show exquisite temporal resolution both in their firing fields and in the fine timing of spikes relative to the phase of theta oscillations. Here, we report evidence of theta phase precession in both the prefrontal cortex and hippocampus during the temporal delay, however, hippocampal cells exhibited steeper phase precession slopes and more punctate time fields. To disentangle whether time cell activity reflects elapsed time or distance traveled, we varied the treadmill running speed on each trial. While many neurons contained multiplexed representations of time and distance, both regions were more strongly influenced by time than distance. Overall, these results demonstrate the flexible integration of spatiotemporal dimensions and reveal complementary representations of time in the prefrontal cortex and hippocampus in supporting memory-guided behavior.
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Affiliation(s)
- Wing Ning
- Center for Systems Neuroscience, Boston University, Boston, Massachusetts, USA.,Department of Psychological and Brain Sciences, Boston University, Boston, Massachusetts, USA.,Department of Neurobiology and Behavior, University of California, Irvine, Irvine, California, USA
| | - John H Bladon
- Center for Systems Neuroscience, Boston University, Boston, Massachusetts, USA.,Department of Psychological and Brain Sciences, Boston University, Boston, Massachusetts, USA.,Department of Psychology, Brandeis University, Waltham, Massachusetts, USA
| | - Michael E Hasselmo
- Center for Systems Neuroscience, Boston University, Boston, Massachusetts, USA.,Department of Psychological and Brain Sciences, Boston University, Boston, Massachusetts, USA
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35
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Chi CH, Yang FC, Chang YL. Age-related volumetric alterations in hippocampal subiculum region are associated with reduced retention of the “when” memory component. Brain Cogn 2022; 160:105877. [DOI: 10.1016/j.bandc.2022.105877] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/11/2021] [Revised: 04/18/2022] [Accepted: 04/22/2022] [Indexed: 11/02/2022]
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36
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Cariani P, Baker JM. Time Is of the Essence: Neural Codes, Synchronies, Oscillations, Architectures. Front Comput Neurosci 2022; 16:898829. [PMID: 35814343 PMCID: PMC9262106 DOI: 10.3389/fncom.2022.898829] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/17/2022] [Accepted: 05/04/2022] [Indexed: 11/25/2022] Open
Abstract
Time is of the essence in how neural codes, synchronies, and oscillations might function in encoding, representation, transmission, integration, storage, and retrieval of information in brains. This Hypothesis and Theory article examines observed and possible relations between codes, synchronies, oscillations, and types of neural networks they require. Toward reverse-engineering informational functions in brains, prospective, alternative neural architectures incorporating principles from radio modulation and demodulation, active reverberant circuits, distributed content-addressable memory, signal-signal time-domain correlation and convolution operations, spike-correlation-based holography, and self-organizing, autoencoding anticipatory systems are outlined. Synchronies and oscillations are thought to subserve many possible functions: sensation, perception, action, cognition, motivation, affect, memory, attention, anticipation, and imagination. These include direct involvement in coding attributes of events and objects through phase-locking as well as characteristic patterns of spike latency and oscillatory response. They are thought to be involved in segmentation and binding, working memory, attention, gating and routing of signals, temporal reset mechanisms, inter-regional coordination, time discretization, time-warping transformations, and support for temporal wave-interference based operations. A high level, partial taxonomy of neural codes consists of channel, temporal pattern, and spike latency codes. The functional roles of synchronies and oscillations in candidate neural codes, including oscillatory phase-offset codes, are outlined. Various forms of multiplexing neural signals are considered: time-division, frequency-division, code-division, oscillatory-phase, synchronized channels, oscillatory hierarchies, polychronous ensembles. An expandable, annotative neural spike train framework for encoding low- and high-level attributes of events and objects is proposed. Coding schemes require appropriate neural architectures for their interpretation. Time-delay, oscillatory, wave-interference, synfire chain, polychronous, and neural timing networks are discussed. Some novel concepts for formulating an alternative, more time-centric theory of brain function are discussed. As in radio communication systems, brains can be regarded as networks of dynamic, adaptive transceivers that broadcast and selectively receive multiplexed temporally-patterned pulse signals. These signals enable complex signal interactions that select, reinforce, and bind common subpatterns and create emergent lower dimensional signals that propagate through spreading activation interference networks. If memory traces share the same kind of temporal pattern forms as do active neuronal representations, then distributed, holograph-like content-addressable memories are made possible via temporal pattern resonances.
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Affiliation(s)
- Peter Cariani
- Hearing Research Center, Boston University, Boston, MA, United States
- Department of Otolaryngology-Head and Neck Surgery, Harvard Medical School, Boston, MA, United States
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37
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Wirtshafter HS, Disterhoft JF. In Vivo Multi-Day Calcium Imaging of CA1 Hippocampus in Freely Moving Rats Reveals a High Preponderance of Place Cells with Consistent Place Fields. J Neurosci 2022; 42:4538-4554. [PMID: 35501152 PMCID: PMC9172072 DOI: 10.1523/jneurosci.1750-21.2022] [Citation(s) in RCA: 16] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/27/2021] [Revised: 04/15/2022] [Accepted: 04/19/2022] [Indexed: 11/21/2022] Open
Abstract
Calcium imaging using GCaMP indicators and miniature microscopes has been used to image cellular populations during long timescales and in different task phases, as well as to determine neuronal circuit topology and organization. Because the hippocampus (HPC) is essential for tasks of memory, spatial navigation, and learning, calcium imaging of large populations of HPC neurons can provide new insight on cell changes over time during these tasks. All reported HPC in vivo calcium imaging experiments have been done in mouse. However, rats have many behavioral and physiological experimental advantages over mice. In this paper, we present the first (to our knowledge) in vivo calcium imaging from CA1 HPC in freely moving male rats. Using the UCLA Miniscope, we demonstrate that, in rat, hundreds of cells can be visualized and held across weeks. We show that calcium events in these cells are highly correlated with periods of movement, with few calcium events occurring during periods without movement. We additionally show that an extremely large percent of cells recorded during a navigational task are place cells (77.3 ± 5.0%, surpassing the percent seen during mouse calcium imaging), and that these cells enable accurate decoding of animal position and can be held over days with consistent place fields in a consistent spatial map. A detailed protocol is included, and implications of these advancements on in vivo imaging and place field literature are discussed.SIGNIFICANCE STATEMENT In vivo calcium imaging in freely moving animals allows the visualization of cellular activity across days. In this paper, we present the first in vivo Ca2+ recording from CA1 hippocampus (HPC) in freely moving rats. We demonstrate that hundreds of cells can be visualized and held across weeks, and that calcium activity corresponds to periods of movement. We show that a high percentage (77.3 ± 5.0%) of imaged cells are place cells, and that these place cells enable accurate decoding and can be held stably over days with little change in field location. Because the HPC is essential for many tasks involving memory, navigation, and learning, imaging of large populations of HPC neurons can shed new insight on cellular activity changes and organization.
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Affiliation(s)
- Hannah S Wirtshafter
- Department of Neuroscience, Northwestern University Feinberg School of Medicine, Chicago, Illinois 60611
| | - John F Disterhoft
- Department of Neuroscience, Northwestern University Feinberg School of Medicine, Chicago, Illinois 60611
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38
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Keinath AT, Mosser CA, Brandon MP. The representation of context in mouse hippocampus is preserved despite neural drift. Nat Commun 2022; 13:2415. [PMID: 35504915 PMCID: PMC9065029 DOI: 10.1038/s41467-022-30198-7] [Citation(s) in RCA: 20] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/12/2021] [Accepted: 04/19/2022] [Indexed: 12/18/2022] Open
Abstract
The hippocampus is thought to mediate episodic memory through the instantiation and reinstatement of context-specific cognitive maps. However, recent longitudinal experiments have challenged this view, reporting that most hippocampal cells change their tuning properties over days even in the same environment. Often referred to as neural or representational drift, these dynamics raise questions about the capacity and content of the hippocampal code. One such question is whether and how these long-term dynamics impact the hippocampal code for context. To address this, we image large CA1 populations over more than a month of daily experience as freely behaving mice participate in an extended geometric morph paradigm. We find that long-timescale changes in population activity occur orthogonally to the representation of context in network space, allowing for consistent readout of contextual information across weeks. This population-level structure is supported by heterogeneous patterns of activity at the level of individual cells, where we observe evidence of a positive relationship between interpretable contextual coding and long-term stability. Together, these results demonstrate that long-timescale changes to the CA1 spatial code preserve the relative structure of contextual representation.
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Affiliation(s)
- Alexandra T Keinath
- Department of Psychiatry, Douglas Hospital Research Centre, McGill University, 6875 Boulevard LaSalle, Verdun, QC, H4H 1R3, Canada.
| | - Coralie-Anne Mosser
- Department of Psychiatry, Douglas Hospital Research Centre, McGill University, 6875 Boulevard LaSalle, Verdun, QC, H4H 1R3, Canada
| | - Mark P Brandon
- Department of Psychiatry, Douglas Hospital Research Centre, McGill University, 6875 Boulevard LaSalle, Verdun, QC, H4H 1R3, Canada.
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39
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Liu Y, Levy S, Mau W, Geva N, Rubin A, Ziv Y, Hasselmo M, Howard M. Consistent population activity on the scale of minutes in the mouse hippocampus. Hippocampus 2022; 32:359-372. [PMID: 35225408 PMCID: PMC10085730 DOI: 10.1002/hipo.23409] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/19/2021] [Revised: 01/05/2022] [Accepted: 01/31/2022] [Indexed: 11/09/2022]
Abstract
Neurons in the hippocampus fire in consistent sequence over the timescale of seconds during the delay period of some memory experiments. For longer timescales, the firing of hippocampal neurons also changes slowly over minutes within experimental sessions. It was thought that these slow dynamics are caused by stochastic drift or a continuous change in the representation of the episode, rather than consistent sequences unfolding over minutes. This paper studies the consistency of contextual drift in three chronic calcium imaging recordings from the hippocampus CA1 region in mice. Computational measures of consistency show reliable sequences within experimental trials at the scale of seconds as one would expect from time cells or place cells during the trial, as well as across experimental trials on the scale of minutes within a recording session. Consistent sequences in the hippocampus are observed over a wide range of time scales, from seconds to minutes. The hippocampal activity could reflect a scale-invariant spatiotemporal context as suggested by theories of memory from cognitive psychology.
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Affiliation(s)
- Yue Liu
- Department of Physics, Boston University, Boston, Massachusetts, USA.,Center for Systems Neuroscience, Boston University, Boston, Massachusetts, USA.,Center for Memory and Brain, Boston University, Boston, Massachusetts, USA
| | - Samuel Levy
- Center for Systems Neuroscience, Boston University, Boston, Massachusetts, USA.,Center for Memory and Brain, Boston University, Boston, Massachusetts, USA.,Department of Psychological and Brain Sciences, Boston University, Boston, Massachusetts, USA
| | - William Mau
- Center for Systems Neuroscience, Boston University, Boston, Massachusetts, USA.,Center for Memory and Brain, Boston University, Boston, Massachusetts, USA.,Department of Psychological and Brain Sciences, Boston University, Boston, Massachusetts, USA
| | - Nitzan Geva
- Department of Neurobiology, Weizmann Institute of Science, Rehovot, Israel
| | - Alon Rubin
- Department of Neurobiology, Weizmann Institute of Science, Rehovot, Israel
| | - Yaniv Ziv
- Department of Neurobiology, Weizmann Institute of Science, Rehovot, Israel
| | - Michael Hasselmo
- Center for Systems Neuroscience, Boston University, Boston, Massachusetts, USA.,Center for Memory and Brain, Boston University, Boston, Massachusetts, USA.,Department of Psychological and Brain Sciences, Boston University, Boston, Massachusetts, USA
| | - Marc Howard
- Department of Physics, Boston University, Boston, Massachusetts, USA.,Center for Systems Neuroscience, Boston University, Boston, Massachusetts, USA.,Center for Memory and Brain, Boston University, Boston, Massachusetts, USA.,Department of Psychological and Brain Sciences, Boston University, Boston, Massachusetts, USA
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40
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Hippocampal ensembles represent sequential relationships among an extended sequence of nonspatial events. Nat Commun 2022; 13:787. [PMID: 35136052 PMCID: PMC8825855 DOI: 10.1038/s41467-022-28057-6] [Citation(s) in RCA: 16] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/31/2020] [Accepted: 12/28/2021] [Indexed: 11/25/2022] Open
Abstract
The hippocampus is critical to the temporal organization of our experiences. Although this fundamental capacity is conserved across modalities and species, its underlying neuronal mechanisms remain unclear. Here we recorded hippocampal activity as rats remembered an extended sequence of nonspatial events unfolding over several seconds, as in daily life episodes in humans. We then developed statistical machine learning methods to analyze the ensemble activity and discovered forms of sequential organization and coding important for order memory judgments. Specifically, we found that hippocampal ensembles provide significant temporal coding throughout nonspatial event sequences, differentiate distinct types of task-critical information sequentially within events, and exhibit theta-associated reactivation of the sequential relationships among events. We also demonstrate that nonspatial event representations are sequentially organized within individual theta cycles and precess across successive cycles. These findings suggest a fundamental function of the hippocampal network is to encode, preserve, and predict the sequential order of experiences. It remains unclear how hippocampal activity supports the temporal organization of our experiences. In this paper, the authors recorded from rats performing an odor sequence task and show that hippocampal ensembles represent the sequential relations among nonspatial events at different timescales.
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41
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Carstensen LC, Alexander AS, Chapman GW, Lee AJ, Hasselmo ME. Neural responses in retrosplenial cortex associated with environmental alterations. iScience 2021; 24:103377. [PMID: 34825142 PMCID: PMC8605176 DOI: 10.1016/j.isci.2021.103377] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/02/2021] [Revised: 09/14/2021] [Accepted: 10/26/2021] [Indexed: 11/26/2022] Open
Abstract
The retrosplenial cortex (RSC) is an area interconnected with regions of the brain that display spatial correlates. Neurons in connected regions may encode an animal’s position in the environment and location or proximity to objects or boundaries. RSC has also been shown to be important for spatial memory, such as tracking distance from and between landmarks, contextual information, and orientation within an environment. For these reasons, it is important to determine how neurons in RSC represent cues such as objects or boundaries and their relationship to the environment. In the current work, we performed electrophysiological recordings in RSC, whereas rats foraged in arenas that could contain an object or in which the environment was altered. We report RSC neurons display changes in mean firing rate responding to alterations of the environment. These alterations include the arena rotating, changing size or shape, or an object being introduced into the arena. Insertion of an object induces a change in mean firing rate in retrosplenial neurons Cells that change mean firing rate (MFR) are not driven by speed modulation Population representation changes over time, but not in cells with MFR changes Manipulation of environmental features induces a change in mean firing rate
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Affiliation(s)
- Lucas C Carstensen
- Center for Systems Neuroscience, Boston University, 610 Commonwealth Avenue, Boston, MA 02215, USA.,Department of Psychological and Brain Sciences, Boston University, 610 Commonwealth Avenue, Boston, MA 02215, USA.,Graduate Program for Neuroscience, Boston University, 610 Commonwealth Avenue, Boston, MA 02215, USA
| | - Andrew S Alexander
- Center for Systems Neuroscience, Boston University, 610 Commonwealth Avenue, Boston, MA 02215, USA.,Department of Psychological and Brain Sciences, Boston University, 610 Commonwealth Avenue, Boston, MA 02215, USA
| | - G William Chapman
- Center for Systems Neuroscience, Boston University, 610 Commonwealth Avenue, Boston, MA 02215, USA.,Department of Psychological and Brain Sciences, Boston University, 610 Commonwealth Avenue, Boston, MA 02215, USA
| | - Aubrey J Lee
- Center for Systems Neuroscience, Boston University, 610 Commonwealth Avenue, Boston, MA 02215, USA
| | - Michael E Hasselmo
- Center for Systems Neuroscience, Boston University, 610 Commonwealth Avenue, Boston, MA 02215, USA.,Department of Psychological and Brain Sciences, Boston University, 610 Commonwealth Avenue, Boston, MA 02215, USA.,Graduate Program for Neuroscience, Boston University, 610 Commonwealth Avenue, Boston, MA 02215, USA
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42
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Do Q, Hasselmo ME. Neural circuits and symbolic processing. Neurobiol Learn Mem 2021; 186:107552. [PMID: 34763073 PMCID: PMC10121157 DOI: 10.1016/j.nlm.2021.107552] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/13/2021] [Revised: 10/14/2021] [Accepted: 11/02/2021] [Indexed: 11/29/2022]
Abstract
The ability to use symbols is a defining feature of human intelligence. However, neuroscience has yet to explain the fundamental neural circuit mechanisms for flexibly representing and manipulating abstract concepts. This article will review the research on neural models for symbolic processing. The review first focuses on the question of how symbols could possibly be represented in neural circuits. The review then addresses how neural symbolic representations could be flexibly combined to meet a wide range of reasoning demands. Finally, the review assesses the research on program synthesis and proposes that the most flexible neural representation of symbolic processing would involve the capacity to rapidly synthesize neural operations analogous to lambda calculus to solve complex cognitive tasks.
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Affiliation(s)
- Quan Do
- Center for Systems Neuroscience, Boston University, 610 Commonwealth Ave, Boston, MA 02215, United States.
| | - Michael E Hasselmo
- Center for Systems Neuroscience, Boston University, 610 Commonwealth Ave, Boston, MA 02215, United States.
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43
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Stamatakis AM, Resendez SL, Chen KS, Favero M, Liang-Guallpa J, Nassi JJ, Neufeld SQ, Visscher K, Ghosh KK. Miniature microscopes for manipulating and recording in vivo brain activity. Microscopy (Oxf) 2021; 70:399-414. [PMID: 34283242 PMCID: PMC8491619 DOI: 10.1093/jmicro/dfab028] [Citation(s) in RCA: 16] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/19/2021] [Revised: 07/02/2021] [Accepted: 07/19/2021] [Indexed: 12/23/2022] Open
Abstract
Here we describe the development and application of miniature integrated microscopes (miniscopes) paired with microendoscopes that allow for the visualization and manipulation of neural circuits in superficial and subcortical brain regions in freely behaving animals. Over the past decade the miniscope platform has expanded to include simultaneous optogenetic capabilities, electrically-tunable lenses that enable multi-plane imaging, color-corrected optics, and an integrated data acquisition platform that streamlines multimodal experiments. Miniscopes have given researchers an unprecedented ability to monitor hundreds to thousands of genetically-defined neurons from weeks to months in both healthy and diseased animal brains. Sophisticated algorithms that take advantage of constrained matrix factorization allow for background estimation and reliable cell identification, greatly improving the reliability and scalability of source extraction for large imaging datasets. Data generated from miniscopes have empowered researchers to investigate the neural circuit underpinnings of a wide array of behaviors that cannot be studied under head-fixed conditions, such as sleep, reward seeking, learning and memory, social behaviors, and feeding. Importantly, the miniscope has broadened our understanding of how neural circuits can go awry in animal models of progressive neurological disorders, such as Parkinson's disease. Continued miniscope development, including the ability to record from multiple populations of cells simultaneously, along with continued multimodal integration of techniques such as electrophysiology, will allow for deeper understanding into the neural circuits that underlie complex and naturalistic behavior.
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Affiliation(s)
| | | | - Kai-Siang Chen
- Inscopix Inc., 2462 Embarcadero Way, Palo Alto, CA 94303, USA
| | - Morgana Favero
- Inscopix Inc., 2462 Embarcadero Way, Palo Alto, CA 94303, USA
| | | | | | - Shay Q Neufeld
- Inscopix Inc., 2462 Embarcadero Way, Palo Alto, CA 94303, USA
| | - Koen Visscher
- Inscopix Inc., 2462 Embarcadero Way, Palo Alto, CA 94303, USA
| | - Kunal K Ghosh
- Inscopix Inc., 2462 Embarcadero Way, Palo Alto, CA 94303, USA
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44
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Marks WD, Yamamoto N, Kitamura T. Complementary roles of differential medial entorhinal cortex inputs to the hippocampus for the formation and integration of temporal and contextual memory (Systems Neuroscience). Eur J Neurosci 2021; 54:6762-6779. [PMID: 32277786 PMCID: PMC8187108 DOI: 10.1111/ejn.14737] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/13/2019] [Revised: 03/28/2020] [Accepted: 03/30/2020] [Indexed: 11/29/2022]
Abstract
In humans and rodents, the entorhinal cortical (EC)-hippocampal (HPC) circuit is crucial for the formation and recall of memory, preserving both spatial information and temporal information about the occurrence of past events. Both modeling and experimental studies have revealed circuits within this network that play crucial roles in encoding space and context. However, our understanding about the time-related aspects of memory is just beginning to be understood. In this review, we first describe updates regarding recent anatomical discoveries for the EC-HPC network, as several important neural circuits critical for memory formation have been discovered by newly developed neural tracing technologies. Second, we examine the complementary roles of multiple medial entorhinal cortical inputs, including newly discovered circuits, into the hippocampus for the temporal and spatial aspects of memory. Finally, we will discuss how temporal and contextual memory information is integrated in HPC cornu ammonis 1 cells. We provide new insights into the neural circuit mechanisms for anatomical and functional segregation and integration of the temporal and spatial aspects of memory encoding in the EC-HPC networks.
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Affiliation(s)
- William D. Marks
- Department of Psychiatry, University of Texas Southwestern Medical Center, Dallas, Texas, 75390, USA
| | - Naoki Yamamoto
- Department of Psychiatry, University of Texas Southwestern Medical Center, Dallas, Texas, 75390, USA
| | - Takashi Kitamura
- Department of Psychiatry, University of Texas Southwestern Medical Center, Dallas, Texas, 75390, USA
- Department of Neuroscience, University of Texas Southwestern Medical Center, Dallas, Texas, 75390, USA
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45
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de Sousa AF, Chowdhury A, Silva AJ. Dimensions and mechanisms of memory organization. Neuron 2021; 109:2649-2662. [PMID: 34242564 PMCID: PMC8416710 DOI: 10.1016/j.neuron.2021.06.014] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/19/2021] [Revised: 04/17/2021] [Accepted: 06/11/2021] [Indexed: 12/31/2022]
Abstract
Memory formation is dynamic in nature, and acquisition of new information is often influenced by previous experiences. Memories sharing certain attributes are known to interact so that retrieval of one increases the likelihood of retrieving the other, raising the possibility that related memories are organized into associative mnemonic structures of interconnected representations. Although the formation and retrieval of single memories have been studied extensively, very little is known about the brain mechanisms that organize and link related memories. Here we review studies that suggest the existence of mnemonic structures in humans and animal models. These studies suggest three main dimensions of experience that can serve to organize related memories: time, space, and perceptual/conceptual similarities. We propose potential molecular, cellular, and systems mechanisms that might support organization of memories according to these dimensions.
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Affiliation(s)
- André F de Sousa
- Departments of Neurobiology, Psychiatry & Biobehavioral Sciences, and Psychology, Integrative Center for Learning and Memory, Brain Research Institute, University of California, Los Angeles, Los Angeles, CA 90095, USA
| | - Ananya Chowdhury
- Departments of Neurobiology, Psychiatry & Biobehavioral Sciences, and Psychology, Integrative Center for Learning and Memory, Brain Research Institute, University of California, Los Angeles, Los Angeles, CA 90095, USA
| | - Alcino J Silva
- Departments of Neurobiology, Psychiatry & Biobehavioral Sciences, and Psychology, Integrative Center for Learning and Memory, Brain Research Institute, University of California, Los Angeles, Los Angeles, CA 90095, USA.
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46
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Climer JR, Dombeck DA. Information Theoretic Approaches to Deciphering the Neural Code with Functional Fluorescence Imaging. eNeuro 2021; 8:ENEURO.0266-21.2021. [PMID: 34433574 PMCID: PMC8474651 DOI: 10.1523/eneuro.0266-21.2021] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/08/2021] [Revised: 07/22/2021] [Accepted: 08/04/2021] [Indexed: 11/21/2022] Open
Abstract
Information theoretic metrics have proven useful in quantifying the relationship between behaviorally relevant parameters and neuronal activity with relatively few assumptions. However, these metrics are typically applied to action potential (AP) recordings and were not designed for the slow timescales and variable amplitudes typical of functional fluorescence recordings (e.g., calcium imaging). The lack of research guidelines on how to apply and interpret these metrics with fluorescence traces means the neuroscience community has yet to realize the power of information theoretic metrics. Here, we used computational methods to create mock AP traces with known amounts of information. From these, we generated fluorescence traces and examined the ability of different information metrics to recover the known information values. We provide guidelines for how to use information metrics when applying them to functional fluorescence and demonstrate their appropriate application to GCaMP6f population recordings from mouse hippocampal neurons imaged during virtual navigation.
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Affiliation(s)
- Jason R Climer
- Department of Neurobiology, Northwestern University, Evanston, 60208 IL
| | - Daniel A Dombeck
- Department of Neurobiology, Northwestern University, Evanston, 60208 IL
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47
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van der Veldt S, Etter G, Mosser CA, Manseau F, Williams S. Conjunctive spatial and self-motion codes are topographically organized in the GABAergic cells of the lateral septum. PLoS Biol 2021; 19:e3001383. [PMID: 34460812 PMCID: PMC8432898 DOI: 10.1371/journal.pbio.3001383] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/14/2021] [Revised: 09/10/2021] [Accepted: 08/02/2021] [Indexed: 12/22/2022] Open
Abstract
The hippocampal spatial code’s relevance for downstream neuronal populations—particularly its major subcortical output the lateral septum (LS)—is still poorly understood. Here, using calcium imaging combined with unbiased analytical methods, we functionally characterized and compared the spatial tuning of LS GABAergic cells to those of dorsal CA3 and CA1 cells. We identified a significant number of LS cells that are modulated by place, speed, acceleration, and direction, as well as conjunctions of these properties, directly comparable to hippocampal CA1 and CA3 spatially modulated cells. Interestingly, Bayesian decoding of position based on LS spatial cells reflected the animal’s location as accurately as decoding using the activity of hippocampal pyramidal cells. A portion of LS cells showed stable spatial codes over the course of multiple days, potentially reflecting long-term episodic memory. The distributions of cells exhibiting these properties formed gradients along the anterior–posterior and dorsal–ventral axes of the LS, directly reflecting the topographical organization of hippocampal inputs to the LS. Finally, we show using transsynaptic tracing that LS neurons receiving CA3 and CA1 excitatory input send projections to the hypothalamus and medial septum, regions that are not targeted directly by principal cells of the dorsal hippocampus. Together, our findings demonstrate that the LS accurately and robustly represents spatial, directional as well as self-motion information and is uniquely positioned to relay this information from the hippocampus to its downstream regions, thus occupying a key position within a distributed spatial memory network. Calcium imaging of neurons in freely behaving mice reveals how the lateral septum, the main output of the hippocampal place cells, effectively represents information about not only location, but also head direction and self-movement, and may be pivotal in sending this information to downstream brain regions.
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Affiliation(s)
| | - Guillaume Etter
- McGill University & Douglas Mental Health University Institute, Montreal, Canada
| | - Coralie-Anne Mosser
- McGill University & Douglas Mental Health University Institute, Montreal, Canada
| | - Frédéric Manseau
- McGill University & Douglas Mental Health University Institute, Montreal, Canada
| | - Sylvain Williams
- McGill University & Douglas Mental Health University Institute, Montreal, Canada
- * E-mail:
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48
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Rastmanesh R, Pitkänen M. Can the Brain Be Relativistic? Front Neurosci 2021; 15:659860. [PMID: 34220421 PMCID: PMC8250859 DOI: 10.3389/fnins.2021.659860] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/28/2021] [Accepted: 05/19/2021] [Indexed: 11/17/2022] Open
Affiliation(s)
- Reza Rastmanesh
- Independent Researcher, Private Clinic, Tehran, Iran.,Independent Researcher, Washington, DC, United States
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49
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Sarkar A, Howard MW. Scale-Dependent Relationships in Natural Language. COMPUTATIONAL BRAIN & BEHAVIOR 2021; 4:164-177. [PMID: 34337323 PMCID: PMC8317965 DOI: 10.1007/s42113-020-00094-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Accepted: 10/06/2020] [Indexed: 06/13/2023]
Abstract
Language, like other natural sequences, exhibits statistical dependencies at a wide range of scales (Lin & Tegmark, 2016). However, many statistical learning models applied to language impose a sampling scale while extracting statistical structure. For instance, Word2Vec creates vector embeddings by sampling context in a window around each word, the size of which defines a strong scale; relationships over much larger temporal scales would be invisible to the algorithm. This paper examines the family of Word2Vec embeddings generated while systematically manipulating the size of the context window. The primary result is that different linguistic relationships are preferentially encoded at different scales. Different scales emphasize different syntactic and semantic relations between words, as assessed both by analogical reasoning tasks in the Google Analogies test set and human similarity rating datasets WordSim-353 and SimLex-999. Moreover, the neighborhoods of a given word in the embeddings change considerably depending on the scale. These results suggest that sampling at any individual scale can only identify a subset of the meaningful relationships a word might have, and point toward the importance of developing scale-free models of semantic meaning.
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Affiliation(s)
- Aakash Sarkar
- Department of Psychological and Brain Sciences Boston University
| | - Marc W Howard
- Department of Psychological and Brain Sciences Boston University
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50
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Shikano Y, Ikegaya Y, Sasaki T. Minute-encoding neurons in hippocampal-striatal circuits. Curr Biol 2021; 31:1438-1449.e6. [PMID: 33545048 DOI: 10.1016/j.cub.2021.01.032] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/23/2020] [Revised: 11/16/2020] [Accepted: 01/11/2021] [Indexed: 11/16/2022]
Abstract
Animals process temporal information in an ever-changing environment, but the neuronal mechanisms of this process, especially on timescales longer than seconds, remain unresolved. Here, we designed a hippocampus-dependent task in which rats prospectively increased their reward-seeking behavior over a duration of minutes. During this timing behavior, hippocampal and striatal neurons represented successive time points on the order of minutes by gradually changing their firing rates and transiently increasing their firing rates at specific time points. These minute-encoding patterns progressively developed as the rats learned a time-reward relationship, and the patterns underwent flexible scaling in parallel with timing behavior. These observations suggest a neuronal basis in the hippocampal-striatal circuits that enables temporal processing and formation of episodic memory on a timescale of minutes.
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Affiliation(s)
- Yu Shikano
- Graduate School of Pharmaceutical Sciences, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-0033, Japan
| | - Yuji Ikegaya
- Graduate School of Pharmaceutical Sciences, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-0033, Japan; Center for Information and Neural Networks, 1-4 Yamadaoka, Suita City, Osaka 565-0871, Japan; Institute for AI and Beyond, The University of Tokyo, Tokyo 113-0033, Japan
| | - Takuya Sasaki
- Graduate School of Pharmaceutical Sciences, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-0033, Japan; Precursory Research for Embryonic Science and Technology (PRESTO), Japan Science and Technology Agency (JST), 4-1-8 Honcho, Kawaguchi, Saitama 332-0012, Japan.
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