The effects of crude oil on microbial nitrogen cycling in coastal sediments

Effects of intensive oyster farming on nitrogen speciation in surface sediments from a typical subtropical mariculture bay

The spatial-temporal distributions of various nitrogen (N) species in surface sediments were examined in a typical subtropical mariculture bay (Maowei Sea) in the northern Beibu Gulf to assess the impact of intensive oyster culture activities on sedimentary N speciation. The results indicated that the mean contents of total nitrogen (TN), extractable (labile) nitrogen (LN) and residual nitrogen (RN) in the surface sediments were 33.3 ± 15.5 μmol g-1, 13.8 ± 1.3 μmol g-1 and 19.5 ± 15.0 μmol g-1, respectively, which lacked significant seasonal variability (P > 0.05). Four forms of LN, namely ion extractable form (IEF-N), weak acid extractable form (WAEF-N), strong alkali extractable form (SAEF-N) and strong oxidant extractable form (SOEF-N) were identified based on sequential extraction. SOEF-N was the dominant form of LN, accounting for 67.8 ± 2.5 % and 63.7 ± 5.9 % in summer and winter, respectively. Spatially, the contents of sedimentary TN, LN, RN, WAEF-N and SOEF-N in intensive mariculture areas (IMA) were significantly higher than those in non-intensive mariculture areas (NIMA) during summer (P < 0.05). Stable nitrogen isotope (δ15N) mixing model revealed that shellfish biodeposition was the predominant source of sedimentary TN in IMA with a contribution of 67.8 ± 23.0 %, approximately 5.4 times that of NIMA (12.6 ± 3.3 %). Significant positive correlations (P < 0.05) were observed between most forms of N species (WAEF-N, SOEF-N, LN and RN) and shellfish-biodeposited N in the surface sediments during summer, indicating that intensive oyster farming greatly enhanced sedimentary TN accumulation.

Effects of microplastics on cold seep sediment prokaryotic communities

Cold seep sediments are an important reservoir of microplastics (MPs) whose impact on the structure and function of prokaryotic community is not well understood. In this study, the impact of 0.2% and 1% (w/w) polyethylene (PE), polystyrene (PS), and polypropylene (PP) MPs on the cold seep sediment prokaryotic community was investigated in a 120-day laboratory incubation experiment. The results revealed that exposure to MPs altered sedimentary chemical properties in a type- and concentration-dependent manner. Furthermore, MPs significantly altered the structure of bacterial community, with some MPs degradation-associated bacterial phyla significantly increasing (p < 0.05). However, in the case of archaea, the changes in the structure of microbial community were less pronounced (p > 0.05). Co-occurrence network analysis revealed that the addition of MPs reduced the network complexity, while PICRUSt2 and FAPROTAX analyses suggested that 0.2% PP and 1% PS MPs had the most significant effects on the nitrogen and carbon cycles (p < 0.05). Overall, this study provides new insights into the effects of MPs on the structure and function of microbial communities in cold seep sediments.

Moderate anthropogenic disturbance stimulates versatile microbial taxa contributing to denitrification and aromatic compound degradation

Wastewater treatment plants (WWTPs) effluent often contains a significant amount of residual organic pollutants and nutrients, causing disturbance to the coastal effluent receiving areas (ERA). Microbial communities in coastal ERA sediments may benefit from the coexistence of organic pollutants and nutrients, promoting the emergence of versatile taxa that are capable of eliminating these substances simultaneously. However, the identification and exploration of versatile taxa in natural environments under anthropogenic disturbances remain largely uncharted territory. In this study, we specifically focused on the versatile taxa coupled by the degradation of aromatic compounds (ACs) and denitrification, using Hangzhou Bay in China as our study area. We explored how WWTPs effluent disturbance would affect the versatile taxa, and particularly examined the role of disturbance intensity in shaping their composition. Intriguingly, we found that versatile taxa were mainly derived from denitrifiers like Pseudomonas, suggesting the fulfilled potential of denitrifiers regarding ACs degradation. We also discovered that moderate disturbance stimulated the diversity of versatile taxa, resulting in strengthened functional redundancy. Through correlation network analysis, we further demonstrated that moderate disturbance enhanced the community-level cooperation. Thus, moderate disturbance serves as a catalyst for versatile taxa to maintain community function, making them more resilient to effluent disturbances. Additionally, we identified COD and NO3--N concentrations as significant environmental factors influencing the versatile taxa. Overall, our findings reveal the role of effluent disturbances in the promotion of versatile taxa, and highlight moderate disturbance can foster more robust versatile taxa that are better equipped to handle effluent disturbances.

Enhanced remediation of oil-contaminated intertidal sediment by bacterial consortium of petroleum degraders and biosurfactant producers

Oil pollution in intertidal zones is an important environmental issue that has serious adverse effects on coastal ecosystems. This study investigated the efficacy of a bacterial consortium constructed from petroleum degraders and biosurfactant producers in the bioremediation of oil-polluted sediment. Inoculation of the constructed consortium significantly enhanced the removal of C₈-C₄₀n-alkanes (80.2 ± 2.8% removal efficiency) and aromatic compounds (34.4 ± 10.8% removal efficiency) within 10 weeks. The consortium played dual functions of petroleum degradation and biosurfactant production, greatly improving microbial growth and metabolic activities. Real-time quantitative polymerase chain reaction (PCR) showed that the consortium markedly increased the proportions of indigenous alkane-degrading populations (up to 3.88-times higher than that of the control treatment). Microbial community analysis demonstrated that the exogenous consortium activated the degradation functions of indigenous microflora and promoted synergistic cooperation among microorganisms. Our findings indicated that supplementation of a bacterial consortium of petroleum degraders and biosurfactant producers is a promising bioremediation strategy for oil-polluted sediments.

Revealing the response of microbial communities to polyethylene micro(nano)plastics exposure in cold seep sediment

To date, multiple studies have shown that the accumulation of microplastics (MPs)/nanoplastics (NPs) in the environment may lead to various problems. However, the effects of MPs/NPs on microbial communities and biogeochemical processes, particularly methane metabolism in cold seep sediments, have not been well elucidated. In this study, an indoor microcosm experiment for a period of 120 days exposure of MPs/NPs was conducted. The results showed that MPs/NPs addition did not significantly influence bacterial and archaeal richness in comparison with the control (p > 0.05), whereas higher levels of NPs (1 %, w/w) had a significant adverse effect on bacterial diversity (p < 0.05). Moreover, the bacterial community was more sensitive to the addition of MPs/NPs than the archaea, and Epsilonbacteraeota replaced Proteobacteria as the dominant phylum in the MPs/NPs treatments (except 0.2 % NPs). With respect to the co-occurrence relationships, network analysis showed that the presence of NPs, in comparison with MPs, reduced microbial network complexity. Finally, the presence of MPs/NPs decreased the abundance of mcrA, while promoting the abundance of pmoA. This study will help elucidate the responses of microbial communities to MPs/NPs and evaluate their effects on methane metabolism in cold seep ecosystems.

Application of 15N tracing and bioinformatics for estimating microbial-mediated nitrogen cycle processes in oil-contaminated soils

Crude oil pollution can profoundly alter the nitrogen (N) cycle in the soil. Here, a 30-day incubation with ¹⁵N tracer approach was performed to assess the impacts of crude oil concentrations (medium: 10,000 mg kg^-1; heavy: 50,000 mg kg^-1) on soil N cycling based on a numerical model. Results showed that crude oil pollution significantly increased the gross N-transformation rates, but the rates of oxidation of recalcitrant organic N, the immbolization of NO₃^- and the adsorption of NH₄⁺ changed differently as a function of hydrocarbon concentrations. There was no significant difference of the oxidation rate of recalcitrant organic N between the medium and heavy oil-contaminated soils (medium: 0.1149 mmol N kg^-1 d^-1; heavy: 0.1299 mmol N kg^-1 d^-1), but the rates of NO₃^- immobilization (0.1135 mmol N kg^-1 d^-1) and NH₄⁺ adsorption were the highest (0.1148 mmol N kg^-1 d^-1) in the moderately oil-contaminated soils than those in the heavy polluted soil (0.0849 mmol N kg^-1 d^-1 and 0.0034 mmol N kg^-1 d^-1, respectively). The NO₃^- immobilization rate was 2.5-fold higher than its reduction rate, indicating that NO₃^- immobilization played a more important role during the process of NO₃^- transformation. Microbial community structure analysis indicated that phyla of Actinobacteria and Ascomycota respectively promoted the immobilization of NO₃^- to recalcitrant organic N and the reduction of NO₃^- to NH₄⁺. The genus of Aspergillus was related to net NH₄⁺ production, and the genera of Penicillium and Acremonium were responsible for oxidation of recalcitrant organic N to NO₃^-.

Bio-polysaccharide composites mediated degradation of polyaromatic hydrocarbons in a sandy soil using free and immobilized consortium of Kocuria rosea and Aspergillus sydowii

Based on our previous study in minimal medium, Kocuria rosea and Aspergillus sydowii were identified as the best microbes for degradation of mixture of polyaromatic hydrocarbons (PAHs). The present study reports PAH degradation potential of these microbes in free and immobilized form. PAHs were extracted using QuEChERS-mediated process followed by quantification by high performance liquid chromatography. The microbial consortium of Kocuria rosea + Aspergillus sydowii was formulated in three bio-formulations, namely (i) bentonite-alginate composite beads; (ii) water dispersible granule composite using guar gum-nanobentonite; and (iii) composites of carboxymethyl cellulose-bentonite and were applied in PAH fortified (100 µg g-1) sandy loam soil. Results suggested that degradation data fitted well to first order kinetics as in most of the cases, the values of correlation coefficient (r) were > 0.95. The half-life (t1/2) values for PAHs in the uninoculated control soil were: naphthalene (10.43 d), fluorene (22.43 d), phenanthrene (24.64 d), anthracene (38.47 d), and pyrene (34.34 d). Inoculation of soil with free culture microbial consortium (without or with nutrient) and bio-formulation of degrading cultures enhanced degradation of all PAHs and half-life values were significantly reduced for each PAH: naphthalene (1.76-2.00 d), fluorene (2.52-6.65 d), phenanthrene (4.61-6.37 d), anthracene (9.01-12.22 d), and pyrene (10.98-15.55 d). Among different bio-formulations, guar gum-nanobentonite-based composite exhibited better efficacy for degradation of naphthalene, fluorene, phenanthrene, anthracene, and pyrene. The addition of microbial consortium in PAH fortified soil increased 16S rRNA gene copies of Alphaproteobacteria and Bacteroidetes, compared to the uninoculated, PAH-fortified control. The microbial functional gene assays showed that the gene copies of amoA, nirK, nirS, and anammox increased, suggesting nitrogen regulation in the PAH-fortified soil.

Effect of petroleum hydrocarbon pollution levels on the soil microecosystem and ecological function

Petroleum hydrocarbon pollution is a global problem. However, the effects of different petroleum pollution levels on soil microbial communities and ecological functions are still not clear. In this study, we analyzed the changes in microbial community structures and carbon and nitrogen transformation functions in oil-contaminated soils at different concentrations by chemical analysis, high-throughput sequencing techniques, cooccurrence networks, and KEGG database comparison functional gene annotation. The results showed that heavy petroleum concentrations (petroleum concentrations greater than 20,000 mg kg^-1) significantly decreased soil microbial diversity (p = 0.01), soil microbiome network complexity, species coexistence patterns, and prokaryotic carbon and nitrogen fixation genes. In medium petroleum contamination (petroleum concentrations of between 4000 mg kg^-1 and 20,000 mg kg^-1), microbial diversity (p > 0.05) and carbon and nitrogen transformation genes showed no evident change but promoted species coexistence patterns. Heavy petroleum contamination increased the Proteobacteria phylum abundance by 3.91%-57.01%, while medium petroleum contamination increased the Actinobacteria phylum abundance by 1.69%-0.26%. The results suggested that petroleum concentrations played a significant role in shifting soil microbial community structures, ecological functions, and species diversities.

Crude oil exploration in Africa: socio-economic implications, environmental impacts, and mitigation strategies

Crude oil exploration is a source of significant revenue in Africa via trade and investment since its discovery in the mid-19th Century. Crude oil has bolstered the continent's economy and improved the wellbeing of the citizenry. Historically, Africa has suffered from conflicts due to uneven redistribution of crude oil revenue and severe environmental pollution. Advancements in geophysical survey techniques, such as magnetic and gravity methods, to seismic methods, have made the commercial exploration of crude oil possible for some other countries in Africa apart from Nigeria, Angola, Algeria, Libya, and Egypt. The occurrence of organic-rich, oil-prone Type I, II, and mixed II/III kerogens in sedimentary basins and entrapment within reservoir rocks with intrinsic petrophysical properties are majorly responsible for the large deposits of hydrocarbon in Africa. The unethical practices by some multinational oil corporations have resulted in social movements against them by host communities and human rights groups. The unscrupulous diversion of public funds, award of oil blocks, and production rights to certain individuals have impaired economic growth in Africa. The over-dependence on crude oil revenues has caused the economic recession in oil-producing countries due to plummeting oil prices and global pandemic. Most host communities of crude oil deposits suffer from a lack of infrastructure, arable soils, clean water, and their functioning capabilities are violated by crude oil exploratory activities, without adequate compensations and remedial actions taken by oil companies and the government. Thus, this review examines crude oil exploration in Africa and provides insight into the environmental and socio-economic implications of crude oil exploration in Africa. Furthermore, this report highlights some recommendations that may ensure ethical and sustainable practices toward minimizing negative impacts and improving the quality of life in affected communities.

Anaerobic-petroleum degrading bacteria: Diversity and biotechnological applications for improving coastal soil

Due to the industrial emissions and accidental spills, the critical material for modern industrial society petroleum pollution causes severe ecological damage. The prosperous oil exploitation and transportation causes the recalcitrant, hazardous, and carcinogenic sludge widespread in the coastal wetlands. The costly physicochemical-based remediation remains the secondary and inadequate treatment for the derivatives along with the tailings. Anaerobic microbial petroleum degrading biotechnology has received extensive attention for its cost acceptable, eco-friendly, and fewer health hazards. As a result of the advances in biotechnology and microbiology, the anaerobic oil-degrading bacteria have been well developing to achieve the same remediation effects with lower operating costs. This review summarizes the advantages and potential scenarios of the anaerobic degrading bacteria, such as sulfate-reducing bacteria, denitrifying bacteria, and metal-reducing bacteria in the coastal area decomposing the alkanes, alkenes, aromatic hydrocarbons, polycyclic aromatic, and related derivatives. In the future, a complete theoretical basis of microbiological biotechnology, molecular biology, and electrochemistry is necessary to make efficient and environmental-friendly use of anaerobic degradation bacteria to mineralize oil sludge organic wastes.