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Ding C, Yang Q, Zhao X, Xu L, Tang H, Liu Z, Zhai J, Zhang Q. A review of 210Pb and 210Po in moss. JOURNAL OF ENVIRONMENTAL RADIOACTIVITY 2024; 276:107448. [PMID: 38749215 DOI: 10.1016/j.jenvrad.2024.107448] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/29/2024] [Revised: 05/06/2024] [Accepted: 05/10/2024] [Indexed: 05/24/2024]
Abstract
Among environment contaminants, 210Pb and 210Po have gained significant research attention due to their radioactive toxicity. Moss, with its exceptional adsorption capability for these radionuclides, serves as an indicator for environmental 210Pb and 210Po pollution. The paper reviews a total of 138 articles, summarizing the common methods and analytical results of 210Pb and 210Po research in moss. It elucidates the accumulation characteristics of 210Pb and 210Po in moss, discusses current research challenges, potential solutions, and future prospects in this field. Existing literature indicates limitations in common measurement techniques for 210Pb and 210Po in moss, characterized by high detection limits or lengthy sample processing. The concentration of 210Pb and 210Po within moss display substantial variations across different regions worldwide, ranging from
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Affiliation(s)
- Chenlu Ding
- College of Nuclear Technology and Automation Engineering, Chengdu University of Technology, Chengdu, 610059, Sichuan, PR China
| | - Qiang Yang
- College of Nuclear Technology and Automation Engineering, Chengdu University of Technology, Chengdu, 610059, Sichuan, PR China; Sichuan Cancer Hospital & Institute, Affiliated Cancer Hospital of University of Electronic Science and Technology of China, Chengdu, 611731, PR China.
| | - Xue Zhao
- Chongqing Radiation Environment Supervision and Management Station, Chongqing, 400015, PR China
| | - Lipeng Xu
- Sichuan Cancer Hospital & Institute, Affiliated Cancer Hospital of University of Electronic Science and Technology of China, Chengdu, 611731, PR China
| | - Hui Tang
- College of Nuclear Technology and Automation Engineering, Chengdu University of Technology, Chengdu, 610059, Sichuan, PR China; Sichuan Management and Monitoring Center Station of Radioactive Environment, Chengdu, 611139, PR China
| | - Zhengshang Liu
- College of Nuclear Technology and Automation Engineering, Chengdu University of Technology, Chengdu, 610059, Sichuan, PR China
| | - Juan Zhai
- College of Nuclear Technology and Automation Engineering, Chengdu University of Technology, Chengdu, 610059, Sichuan, PR China
| | - Qingxian Zhang
- College of Nuclear Technology and Automation Engineering, Chengdu University of Technology, Chengdu, 610059, Sichuan, PR China
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Sindhu SS, Sehrawat A, Glick BR. The involvement of organic acids in soil fertility, plant health and environment sustainability. Arch Microbiol 2022; 204:720. [DOI: 10.1007/s00203-022-03321-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/10/2022] [Revised: 10/22/2022] [Accepted: 11/03/2022] [Indexed: 11/21/2022]
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Phour M, Sindhu SS. Mitigating abiotic stress: microbiome engineering for improving agricultural production and environmental sustainability. PLANTA 2022; 256:85. [PMID: 36125564 DOI: 10.1007/s00425-022-03997-x] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/26/2022] [Accepted: 09/11/2022] [Indexed: 06/15/2023]
Abstract
The responses of plants to different abiotic stresses and mechanisms involved in their mitigation are discussed. Production of osmoprotectants, antioxidants, enzymes and other metabolites by beneficial microorganisms and their bioengineering ameliorates environmental stresses to improve food production. Progressive intensification of global agriculture, injudicious use of agrochemicals and change in climate conditions have deteriorated soil health, diminished the microbial biodiversity and resulted in environment pollution along with increase in biotic and abiotic stresses. Extreme weather conditions and erratic rains have further imposed additional stress for the growth and development of plants. Dominant abiotic stresses comprise drought, temperature, increased salinity, acidity, metal toxicity and nutrient starvation in soil, which severely limit crop production. For promoting sustainable crop production in environmentally challenging environments, use of beneficial microbes has emerged as a safer and sustainable means for mitigation of abiotic stresses resulting in improved crop productivity. These stress-tolerant microorganisms play an effective role against abiotic stresses by enhancing the antioxidant potential, improving nutrient acquisition, regulating the production of plant hormones, ACC deaminase, siderophore and exopolysaccharides and accumulating osmoprotectants and, thus, stimulating plant biomass and crop yield. In addition, bioengineering of beneficial microorganisms provides an innovative approach to enhance stress tolerance in plants. The use of genetically engineered stress-tolerant microbes as inoculants of crop plants may facilitate their use for enhanced nutrient cycling along with amelioration of abiotic stresses to improve food production for the ever-increasing population. In this chapter, an overview is provided about the current understanding of plant-bacterial interactions that help in alleviating abiotic stress in different crop systems in the face of climate change. This review largely focuses on the importance and need of sustainable and environmentally friendly approaches using beneficial microbes for ameliorating the environmental stresses in our agricultural systems.
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Affiliation(s)
- Manisha Phour
- Department of Microbiology, CCS Haryana Agricultural University, Hisar, 125004, India
- University Institute of Biotechnology, Chandigarh University, Mohali, India
| | - Satyavir S Sindhu
- Department of Microbiology, CCS Haryana Agricultural University, Hisar, 125004, India.
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Hassen AI, Khambani LS, Swanevelder ZH, Mtsweni NP, Bopape FL, van Vuuren A, van der Linde EJ, Morey L. Elucidating key plant growth-promoting (PGPR) traits in Burkholderia sp. Nafp2/4-1b (=SARCC-3049) using gnotobiotic assays and whole-genome-sequence analysis. Lett Appl Microbiol 2021; 73:658-671. [PMID: 34426983 DOI: 10.1111/lam.13556] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/31/2021] [Accepted: 07/29/2021] [Indexed: 12/01/2022]
Abstract
Burkholderia sp. Nafp2/4-1b (=SARCC-3049) is a plant growth-promoting rhizobacteria (PGPR) initially isolated from the rhizosphere of pristine grassland in South Africa, and its ability to enhance growth was previously evaluated on maize (Zea mays L.). Here, the bacterium was tested with the aim of investigating its role in improving the nodulation and growth of the forage legume lucerne (Medicago sativa L.) when it is co-inoculated with the rhizobial symbionts of this legume in the glasshouse. When the co-inoculation resulted in a statistically significant (P = 0·05) increase in the number of nodules and improved plant biomass compared with single inoculation, we sequenced and analysed its genome to gain a better understanding of the genetic determinants responsible for the observed PGPR traits. The Illumina HiSeq 2500-sequenced genome resulted in 92 scaffolds, with an N50 of 322 407 bp, a total draft genome size of 7 788 045 bp and GC content of 66·2%. Analysis of the genome sequence confirmed the presence of a number of essential genes that code for various PGPR traits. The main plant beneficial genes associated with PGPR traits in Burkholderia sp. Nafp2/4-1b include pyoverdine siderophores biosynthesis gene (PvdF); acdS that codes for 1-aminocyclopropane-1-carboxylate (ACC) deaminase; the tryptophan synthase genes involved in auxin biosynthesis (TSA1, TSB1) and the pqqABCDE operon related to phosphate solubilization. This study generated valuable information on the potential of the PGPR Burkholderia sp. strain Nafp2/4-1b as an effective commercial inoculant, which warrants further formulation and field application studies before developing it into a low cost, environmentally safe and effective biofertilizer.
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Affiliation(s)
- A I Hassen
- Agricultural Research Council, Plant Health and Protection, Pretoria, Queenswood, South Africa
| | - L S Khambani
- School of Molecular and Cell Biology, University of the Witwatersrand, Johannesburg, South Africa
| | - Z H Swanevelder
- Agricultural Research Council, Biotechnology Platform, Onderstepoort, South Africa
| | - N P Mtsweni
- Agricultural Research Council, Plant Health and Protection, Pretoria, Queenswood, South Africa
| | - F L Bopape
- Agricultural Research Council, Plant Health and Protection, Pretoria, Queenswood, South Africa
| | - A van Vuuren
- Agricultural Research Council, Plant Health and Protection, Pretoria, Queenswood, South Africa
| | - E J van der Linde
- Agricultural Research Council, Plant Health and Protection, Pretoria, Queenswood, South Africa
| | - L Morey
- ARC-Biometry, Central Office, Pretoria, South Africa
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Hofmann M, Retamal-Morales G, Tischler D. Metal binding ability of microbial natural metal chelators and potential applications. Nat Prod Rep 2020; 37:1262-1283. [DOI: 10.1039/c9np00058e] [Citation(s) in RCA: 29] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Abstract
Metallophores can chelate many different metal and metalloid ions next to iron, make them valuable for many applications.
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Affiliation(s)
- Marika Hofmann
- Institute of Biosciences
- Chemistry and Physics Faculty
- TU Bergakademie Freiberg
- 09599 Freiberg
- Germany
| | - Gerardo Retamal-Morales
- Laboratorio de Microbiología Básica y Aplicada
- Facultad de Química y Biología
- Universidad de Santiago de Chile
- Santiago
- Chile
| | - Dirk Tischler
- Microbial Biotechnology
- Ruhr-Universität Bochum
- 44780 Bochum
- Germany
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Effect of Phosphate-Solubilizing Bacteria on the Mobility of Insoluble Cadmium and Metabolic Analysis. INTERNATIONAL JOURNAL OF ENVIRONMENTAL RESEARCH AND PUBLIC HEALTH 2018; 15:ijerph15071330. [PMID: 29941813 PMCID: PMC6068833 DOI: 10.3390/ijerph15071330] [Citation(s) in RCA: 31] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/04/2018] [Revised: 06/20/2018] [Accepted: 06/22/2018] [Indexed: 12/27/2022]
Abstract
Phosphate-solubilizing bacteria (PSB) can promote plant growth by dissolving insoluble phosphate. Therefore, PSB may have the potential to improve the mobility of heavy metals in soils and enhance phytoextraction. This study isolated a few PSB strains that could dissolve CdCO3 and solid Cd in soil. Two typical PSB, namely, high- and low-Cd-mobilizing PSB (Pseudomonas fluorescens gim-3 and Bacillus cereus qh-35, respectively), were selected to analyze the metabolic profiles, metabolic pathways, and mechanisms of mobilization of insoluble Cd. A total of 34 metabolites secreted by the two PSB strains were identified. Gluconic acid was the main contributor to Cd dissolution (42.4%) in high-Cd-mobilizing PSB. By contrast, gluconic acid was not secreted in low-Cd-mobilizing PSB. Metabolic pathway analysis showed that gluconic acid was produced by the peripheral direct oxidation pathway. Hence, PSB with peripheral direct oxidation pathway were likely to have high-Cd-mobilizing capacity.
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Prior J. Factors influencing residents' acceptance (support) of remediation technologies. THE SCIENCE OF THE TOTAL ENVIRONMENT 2018; 624:1369-1386. [PMID: 29929249 DOI: 10.1016/j.scitotenv.2017.12.133] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/15/2017] [Revised: 12/12/2017] [Accepted: 12/12/2017] [Indexed: 06/08/2023]
Abstract
An increasing diversity of technologies are being used to remediate contaminated sites, yet there remains little understanding of the level of acceptance that residents living near these sites hold for these technologies, and what factors influence their level of acceptance. This lack of understanding hinders the remediation industry's ability to effectively engage with these residents about remediation technology selection, at a time when such engagement is become part and parcel of remediation policy and practice. The study develops on wider research into public acceptance of technologies, using data from a telephone survey of 2009 residents living near thirteen contaminated sites across Australia. Within the survey acceptance is measured through residents' level of support for the application of remediation technologies in their local area. Firstly, a regression analysis of closed-ended questions, and coding of open-ended questions are combined to identify the main predictors of residents' support for remediation technologies. Secondly, coding of open-ended questions was analysed using Crawford and Ostrom's Institutional Grammar Tool to identify norms and sanctions guiding residents' willingness to negotiate their support. The research identifies factors associated with the residents' personal and demographic characteristics, their physical context and engagement with institution during remediation processes, and the technologies themselves which predict residents' level of support for the application of remediation technologies. Bioremediation technologies had higher levels of support than chemical, thermal and physical technologies. Furthermore, the paper identifies a core set of norms and sanctions residents use to negotiate their level of support for remediation technologies.
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Affiliation(s)
- Jason Prior
- Institute for Sustainable Futures, University of Technology Sydney, Australia.
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Singh PC, Srivastava S, Shukla D, Bist V, Tripathi P, Anand V, Arkvanshi SK, Kaur J, Srivastava S. Mycoremediation Mechanisms for Heavy Metal Resistance/Tolerance in Plants. Fungal Biol 2018. [DOI: 10.1007/978-3-319-77386-5_14] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/16/2022]
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Bokhari SH, Mahmood-Ul-Hassan M, Riaz Y, Munir A, Ali Z. Baseline water quality of municipal ponds and metal removal ability of Typha latifolia L. from sewage and industrial wastewaters. INTERNATIONAL JOURNAL OF PHYTOREMEDIATION 2017; 19:1077-1084. [PMID: 28678606 DOI: 10.1080/15226514.2017.1328387] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
Abstract
Municipal effluent of three rural settings of Islamabad was assessed for physicochemical and microbiological parameters by collecting wastewater from inlet and center of ponds. Results showed that water quality was comparatively better at the center as Typha latifolia plants were growing toward the center of ponds. In another study, the wastewater treatment ability of T. latifolia was investigated by growing them in industrial and municipal effluent under greenhouse conditions. Water and plant samples were collected periodically (3rd, 10th, 17th, 24th, and 31st day after transplanting) for the measurement of Pb, Cu, and Cd concentrations. A decrease in heavy metal concentration of both effluents was observed as the experiment progressed and metal removal percentages ranged between 81% and 96%. Complementary the increase in metal concentration in plant tissues was observed over experimental period. Among plant tissues, metal concentration of Pb was highest i.e. 362 mg kg-1 in roots and 313 mg kg-1 in shoots at end of experiment. Pb, Cu, and Cd concentrations were higher in roots than shoots and hence translocation factors were less than 1.0. Metal removal efficiency was better from industrial wastewater and was in order of Pb > Cu > Cd. T. latifolia can be used for remediation of heavy metal-polluted wastewater.
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Affiliation(s)
- Syeda Huma Bokhari
- a National Institute of Bioremediation , Department of Plant and Environmental Protection , National Agricultural Research Centre , Islamabad , Pakistan
| | - Muhammad Mahmood-Ul-Hassan
- b Department of Natural Resource Management , National Agricultural Research Centre , Islamabad , Pakistan
| | - Yousaf Riaz
- a National Institute of Bioremediation , Department of Plant and Environmental Protection , National Agricultural Research Centre , Islamabad , Pakistan
| | - Anjum Munir
- a National Institute of Bioremediation , Department of Plant and Environmental Protection , National Agricultural Research Centre , Islamabad , Pakistan
- c PARC Institute of Advanced Studies in Agriculture, National Agricultural Research Centre , Islamabad , Pakistan
| | - Zeshan Ali
- a National Institute of Bioremediation , Department of Plant and Environmental Protection , National Agricultural Research Centre , Islamabad , Pakistan
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Grobelak A, Hiller J. Bacterial siderophores promote plant growth: Screening of catechol and hydroxamate siderophores. INTERNATIONAL JOURNAL OF PHYTOREMEDIATION 2017; 19:825-833. [PMID: 28699782 DOI: 10.1080/15226514.2017.1290581] [Citation(s) in RCA: 31] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/08/2023]
Abstract
The aim of the study was to determine the quality and quantity of siderophores produced by bacteria isolated from plants' roots. The second aim was to determine the effect of siderophores on plants growth (Festuca rubra L. and Brassica napus L.). The study was carried out using bacteria isolated from roots of: Arabidopsis thaliana L., F. rubra, and Agrostis capillaris L., growing on the heavy metals contaminated area. The chrome azurol sulfonate (CAS) test, Arnow's test for catechol siderophores, and Csaksy's test for hydroxamate siderophores were performed. Among the bacteria, 42 isolates (39%) had a positive result in the CAS. Endophytic bacteria were mostly producing the catechol siderophores. It was found that F. rubra is the plant which is linked with the highest number of siderophores producing bacteria. The highest concentration of siderophores was noted for ectorhizospheric bacteria associated with A. thaliana, hyperaccumulating plant. It was found that hydroxamate siderophores are mainly produced by ectorhizosphere and rhizoplane bacteria. The siderophores producing bacteria reduced the toxicity of metals and improved the phytoremediation. Siderophores treatment increased the growth of plants in the biological assay, growing on two different soils: one highly contaminated with heavy metals and the second strongly alkaline soil.
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Affiliation(s)
- Anna Grobelak
- a Institute of Environmental Engineering, Faculty of Infrastructure and Environment, Czestochowa University of Technology , Czestochowa , Poland
| | - Joanna Hiller
- a Institute of Environmental Engineering, Faculty of Infrastructure and Environment, Czestochowa University of Technology , Czestochowa , Poland
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Gkorezis P, Daghio M, Franzetti A, Van Hamme JD, Sillen W, Vangronsveld J. The Interaction between Plants and Bacteria in the Remediation of Petroleum Hydrocarbons: An Environmental Perspective. Front Microbiol 2016; 7:1836. [PMID: 27917161 PMCID: PMC5116465 DOI: 10.3389/fmicb.2016.01836] [Citation(s) in RCA: 87] [Impact Index Per Article: 9.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/20/2016] [Accepted: 11/01/2016] [Indexed: 11/24/2022] Open
Abstract
Widespread pollution of terrestrial ecosystems with petroleum hydrocarbons (PHCs) has generated a need for remediation and, given that many PHCs are biodegradable, bio- and phyto-remediation are often viable approaches for active and passive remediation. This review focuses on phytoremediation with particular interest on the interactions between and use of plant-associated bacteria to restore PHC polluted sites. Plant-associated bacteria include endophytic, phyllospheric, and rhizospheric bacteria, and cooperation between these bacteria and their host plants allows for greater plant survivability and treatment outcomes in contaminated sites. Bacterially driven PHC bioremediation is attributed to the presence of diverse suites of metabolic genes for aliphatic and aromatic hydrocarbons, along with a broader suite of physiological properties including biosurfactant production, biofilm formation, chemotaxis to hydrocarbons, and flexibility in cell-surface hydrophobicity. In soils impacted by PHC contamination, microbial bioremediation generally relies on the addition of high-energy electron acceptors (e.g., oxygen) and fertilization to supply limiting nutrients (e.g., nitrogen, phosphorous, potassium) in the face of excess PHC carbon. As an alternative, the addition of plants can greatly improve bioremediation rates and outcomes as plants provide microbial habitats, improve soil porosity (thereby increasing mass transfer of substrates and electron acceptors), and exchange limiting nutrients with their microbial counterparts. In return, plant-associated microorganisms improve plant growth by reducing soil toxicity through contaminant removal, producing plant growth promoting metabolites, liberating sequestered plant nutrients from soil, fixing nitrogen, and more generally establishing the foundations of soil nutrient cycling. In a practical and applied sense, the collective action of plants and their associated microorganisms is advantageous for remediation of PHC contaminated soil in terms of overall cost and success rates for in situ implementation in a diversity of environments. Mechanistically, there remain biological unknowns that present challenges for applying bio- and phyto-remediation technologies without having a deep prior understanding of individual target sites. In this review, evidence from traditional and modern omics technologies is discussed to provide a framework for plant-microbe interactions during PHC remediation. The potential for integrating multiple molecular and computational techniques to evaluate linkages between microbial communities, plant communities and ecosystem processes is explored with an eye on improving phytoremediation of PHC contaminated sites.
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Affiliation(s)
- Panagiotis Gkorezis
- Environmental Biology, Centre for Environmental Sciences, Hasselt UniversityDiepenbeek, Belgium
| | - Matteo Daghio
- Department of Environmental Sciences, University of Milano-BicoccaMilano, Italy
- Department of Biological Sciences, Thompson Rivers University, KamloopsBC, Canada
| | - Andrea Franzetti
- Department of Environmental Sciences, University of Milano-BicoccaMilano, Italy
| | | | - Wouter Sillen
- Environmental Biology, Centre for Environmental Sciences, Hasselt UniversityDiepenbeek, Belgium
| | - Jaco Vangronsveld
- Environmental Biology, Centre for Environmental Sciences, Hasselt UniversityDiepenbeek, Belgium
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Li F, Tang K, Cai C, Xu X. Phytolacca acinosa Roxb. with Arthrobacter echigonensis MN1405 enhances heavy metal phytoremediation. INTERNATIONAL JOURNAL OF PHYTOREMEDIATION 2016; 18:956-965. [PMID: 27159623 DOI: 10.1080/15226514.2016.1183573] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/05/2023]
Abstract
The growth and metal-extraction efficiency of plants when exposed to toxic metals can be enhanced by inoculating with certain bacteria, but the mechanisms of this process remain unclear. We report results from glasshouse experiments on the effect of Arthrobacter echigonensis MN1405 in promoting Phytolacca acinosa Roxb. growth when exposed to 100 mg/L Mn solution. Mn removal efficiency in solution was significantly enhanced by bacterial inoculation; Mn was accumulated in the root of P. acinosa Roxb. plant. The bacteria oxidized the Mn on root surface, which formed a Mn plaque to serve as a barrier or a containment to prevent metal toxicity. In this process, pH condition was an important factor on the effects of microbial-assisted heavy metal phytoremediation. Our finding suggests that A. echigonensis MN1405 assisted P. acinosa to achieve high remediation efficiency of Mn removal and accumulation in Mn contamination area.
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Affiliation(s)
- FengYu Li
- a College of Life Sciences, Fujian Normal University , Fuzhou , Fujian Province , China
| | - KeLi Tang
- a College of Life Sciences, Fujian Normal University , Fuzhou , Fujian Province , China
| | - ChunTing Cai
- a College of Life Sciences, Fujian Normal University , Fuzhou , Fujian Province , China
| | - XuPing Xu
- a College of Life Sciences, Fujian Normal University , Fuzhou , Fujian Province , China
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Ozyigit II, Dogan I, Igdelioglu S, Filiz E, Karadeniz S, Uzunova Z. Screening of damage induced by lead (Pb) in rye (Secale cereale L.) – a genetic and physiological approach. BIOTECHNOL BIOTEC EQ 2016. [DOI: 10.1080/13102818.2016.1151378] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/15/2023] Open
Affiliation(s)
- Ibrahim Ilker Ozyigit
- Faculty of Arts and Science, Department of Biology, Marmara University, Goztepe, Istanbul, Turkey
| | - Ilhan Dogan
- Faculty of Science, Department of Molecular Biology and Genetics, Izmir Institute of Technology, Urla, Izmir, Turkey
- Faculty of Science, Department of Biology, Kyrgyzstan-Turkey Manas University, Bishkek, Kyrgyzstan
| | - Sezen Igdelioglu
- Faculty of Arts and Science, Department of Biology, Marmara University, Goztepe, Istanbul, Turkey
| | - Ertugrul Filiz
- Department of Crop and Animal Production, Cilimli Vocational School, Duzce University, Cilimli, Duzce, Turkey
| | - Sedat Karadeniz
- Faculty of Arts and Science, Department of Biology, Marmara University, Goztepe, Istanbul, Turkey
| | - Zeynep Uzunova
- Faculty of Arts and Science, Department of Biology, Marmara University, Goztepe, Istanbul, Turkey
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Singh S, Parihar P, Singh R, Singh VP, Prasad SM. Heavy Metal Tolerance in Plants: Role of Transcriptomics, Proteomics, Metabolomics, and Ionomics. FRONTIERS IN PLANT SCIENCE 2016; 6:1143. [PMID: 26904030 PMCID: PMC4744854 DOI: 10.3389/fpls.2015.01143] [Citation(s) in RCA: 455] [Impact Index Per Article: 50.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/14/2015] [Accepted: 12/02/2015] [Indexed: 05/18/2023]
Abstract
Heavy metal contamination of soil and water causing toxicity/stress has become one important constraint to crop productivity and quality. This situation has further worsened by the increasing population growth and inherent food demand. It has been reported in several studies that counterbalancing toxicity due to heavy metal requires complex mechanisms at molecular, biochemical, physiological, cellular, tissue, and whole plant level, which might manifest in terms of improved crop productivity. Recent advances in various disciplines of biological sciences such as metabolomics, transcriptomics, proteomics, etc., have assisted in the characterization of metabolites, transcription factors, and stress-inducible proteins involved in heavy metal tolerance, which in turn can be utilized for generating heavy metal-tolerant crops. This review summarizes various tolerance strategies of plants under heavy metal toxicity covering the role of metabolites (metabolomics), trace elements (ionomics), transcription factors (transcriptomics), various stress-inducible proteins (proteomics) as well as the role of plant hormones. We also provide a glance of some strategies adopted by metal-accumulating plants, also known as "metallophytes."
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Affiliation(s)
- Samiksha Singh
- Ranjan Plant Physiology and Biochemistry Laboratory, Department of Botany, University of AllahabadAllahabad, India
| | - Parul Parihar
- Ranjan Plant Physiology and Biochemistry Laboratory, Department of Botany, University of AllahabadAllahabad, India
| | - Rachana Singh
- Ranjan Plant Physiology and Biochemistry Laboratory, Department of Botany, University of AllahabadAllahabad, India
| | - Vijay P. Singh
- Department of Botany, Government Ramanuj Pratap Singhdev Post Graduate College, Sarguja UniversityBaikunthpur, India
| | - Sheo M. Prasad
- Ranjan Plant Physiology and Biochemistry Laboratory, Department of Botany, University of AllahabadAllahabad, India
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Pessoa-Filho M, Barreto CC, dos Reis Junior FB, Fragoso RR, Costa FS, de Carvalho Mendes I, de Andrade LRM. Microbiological functioning, diversity, and structure of bacterial communities in ultramafic soils from a tropical savanna. Antonie van Leeuwenhoek 2015; 107:935-49. [PMID: 25616909 DOI: 10.1007/s10482-015-0386-6] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/15/2014] [Accepted: 01/13/2015] [Indexed: 12/01/2022]
Abstract
Ultramafic soils are characterized by high levels of metals, and have been studied because of their geochemistry and its relation to their biological component. This study evaluated soil microbiological functioning (SMF), richness, diversity, and structure of bacterial communities from two ultramafic soils and from a non-ultramafic soil in the Brazilian Cerrado, a tropical savanna. SMF was represented according to simultaneous analysis of microbial biomass C (MBC) and activities of the enzymes β-glucosidase, acid phosphomonoesterase and arylsulfatase, linked to the C, P and S cycles. Bacterial community diversity and structure were studied by sequencing of 16S rRNA gene clone libraries. MBC and enzyme activities were not affected by high Ni contents. Changes in SMF were more related to the organic matter content of soils (SOM) than to their available Ni. Phylogeny-based methods detected qualitative and quantitative differences in pairwise comparisons of bacterial community structures of the three sites. However, no correlations between community structure differences and SOM or SMF were detected. We believe this work presents benchmark information on SMF, diversity, and structure of bacterial communities for a unique type of environment within the Cerrado biome.
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Kumar S, Dubey RS, Tripathi RD, Chakrabarty D, Trivedi PK. Omics and biotechnology of arsenic stress and detoxification in plants: current updates and prospective. ENVIRONMENT INTERNATIONAL 2015; 74:221-30. [PMID: 25454239 DOI: 10.1016/j.envint.2014.10.019] [Citation(s) in RCA: 113] [Impact Index Per Article: 11.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/08/2014] [Revised: 10/21/2014] [Accepted: 10/24/2014] [Indexed: 05/21/2023]
Abstract
Arsenic (As), a naturally occurring metallic element, is a dreadful health hazard to millions of people across the globe. Arsenic is present in low amount in the environment and originates from anthropogenic impact and geogenic sources. The presence of As in groundwater used for irrigation is a worldwide problem as it affects crop productivity, accumulates to different tissues and contaminates food chain. The consumption of As contaminated water or food products leads to several diseases and even death. Recently, studies have been carried out to explore the biochemical and molecular mechanisms which contribute to As toxicity, accumulation, detoxification and tolerance acquisition in plants. This information has led to the development of the biotechnological tools for developing plants with modulated As tolerance and detoxification to safeguard cellular and genetic integrity as well as to minimize food chain contamination. This review aims to provide current updates about the biochemical and molecular networks involved in As uptake by plants and the recent developments in the area of functional genomics in terms of developing As tolerant and low As accumulating plants.
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Affiliation(s)
- Smita Kumar
- CSIR-National Botanical Research Institute (CSIR-NBRI), Rana Pratap Marg, Lucknow 226001, India
| | - Rama Shanker Dubey
- Department of Biochemistry, Faculty of Science, Banaras Hindu University, Varanasi 221005, India
| | - Rudra Deo Tripathi
- CSIR-National Botanical Research Institute (CSIR-NBRI), Rana Pratap Marg, Lucknow 226001, India
| | - Debasis Chakrabarty
- CSIR-National Botanical Research Institute (CSIR-NBRI), Rana Pratap Marg, Lucknow 226001, India
| | - Prabodh Kumar Trivedi
- CSIR-National Botanical Research Institute (CSIR-NBRI), Rana Pratap Marg, Lucknow 226001, India.
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Koelmel J, Prasad MNV, Pershell K. Bibliometric analysis of phytotechnologies for remediation: global scenario of research and applications. INTERNATIONAL JOURNAL OF PHYTOREMEDIATION 2015; 17:145-153. [PMID: 25237725 DOI: 10.1080/15226514.2013.862207] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/03/2023]
Abstract
Phytoremediation is often a low cost alternative to conventional remediation. To assess trends, a bibliometric approach using data from SciVerse Scopus, SciVerseHub, and GoogleTM Trends was used. Globally there is a linear increase in publications containing the word phytoremediation as a percent of all published papers in SciVerse Hub, with China, India, and the Philippines concentrating relatively more research in phytoremediation. Furthermore there was an inverse correlation between a country's Human Development Index (HDI) and a country's phytoremediation research output as a percent of total research. Results show a focus on phytoremediation in countries with low HDI values. This suggests that academic experts are available for advancing phytoremediation applications in countries where the majority of the effected population do not have the education, finances, and political leverage to obtain expensive conventional remediation efforts on their land. Phytoremediation can combine expert advice with affected parties commitment and labor to help mitigate the harms of polluted landscapes.
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Affiliation(s)
- Jeremy Koelmel
- a Department of Plant Sciences , University of Hyderabad , Hyderabad , A. P. , India
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Baycu G, Tolunay D, Ozden H, Csatari I, Karadag S, Agba T, Rognes SE. An Abandoned Copper Mining Site in Cyprus and Assessment of Metal Concentrations in Plants and Soil. INTERNATIONAL JOURNAL OF PHYTOREMEDIATION 2015; 17:622-31. [PMID: 25976876 DOI: 10.1080/15226514.2014.922929] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/13/2023]
Abstract
Mining is an important source of metal pollution in the environment and abandoned mines are extremely restricted habitats for plants. Some plant species growing on metalliferous soils around mine tailings and spoil-heaps are metal-tolerant and accumulate high concentrations of metals. In this investigation, we aimed to perform a research in the CMC-abandoned copper mining area in Lefke-North Cyprus to assess the recent metal pollution in soil and plant systems. We collected 16 soil samples and 25 plant species from 8 localities around the vicinity of tailing ponds. Some concentrations of metals in soil samples varied from 185 to 1023 mg kg(-1) Cu, 15.2 to 59.2 mg kg(-1) Ni, 2.3 to 73.6 mg kg(-1) Cd and metals for plants ranged from 0.135 to 283 mg kg(-1) Cu, 0.26 to 31.2 mg kg(-1) Ni, 0.143 to 277 mg kg(-1) Cd. Atriplex semibaccata, Acacia cyanophylla, Erodium spp., Inula viscosa, Juncus sp., Oxalis pes-caprea, Pistacia lentiscus, Senecio vulgaris and Tragopogon sinuatus accumulated higher concentrations. BCF for Atriplex semibaccata was found very high, for this reason this plant can tentatively be considered as a hyperaccumulator of Cu and Cd, but it needs further investigation for its potential in phytoremediation.
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Affiliation(s)
- G Baycu
- a Istanbul University , Faculty of Science, Biology Department, Botany Division , Istanbul , Turkey
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Gaonkar T, Bhosle S. Effect of metals on a siderophore producing bacterial isolate and its implications on microbial assisted bioremediation of metal contaminated soils. CHEMOSPHERE 2013; 93:1835-1843. [PMID: 23838040 DOI: 10.1016/j.chemosphere.2013.06.036] [Citation(s) in RCA: 37] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/27/2012] [Revised: 05/26/2013] [Accepted: 06/07/2013] [Indexed: 05/28/2023]
Abstract
A bacterial isolate producing siderophore under iron limiting conditions, was isolated from mangroves of Goa. Based on morphological, biochemical, chemotaxonomical and 16S rDNA studies, the isolate was identified as Bacillus amyloliquefaciens NAR38.1. Preliminary characterization of the siderophore indicated it to be catecholate type with dihydroxy benzoate as the core component. Optimum siderophore production was observed at pH 7 in mineral salts medium (MSM) without any added iron with glucose as the carbon source. Addition of NaCl in the growth medium showed considerable decrease in siderophore production above 2% NaCl. Fe(+2) and Fe(+3) below 2 μM and 40 μM concentrations respectively, induced siderophore production, above which the production was repressed. Binding studies of the siderophore with Fe(+2) and Fe(+3) indicated its high affinity towards Fe(+3). The siderophore concentration in the extracellular medium was enhanced when MSM was amended with essential metals Zn, Co, Mo and Mn, however, decreased with Cu, while the concentration was reduced with abiotic metals As, Pb, Al and Cd. Significant increase in extracellular siderophore production was observed with Pb and Al at concentrations of 50 μM and above. The effect of metals on siderophore production was completely mitigated in presence of Fe. The results implicate effect of metals on the efficiency of siderophore production by bacteria for potential application in bioremediation of metal contaminated iron deficient soils especially in the microbial assisted phytoremediation processes.
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Affiliation(s)
- Teja Gaonkar
- Department of Microbiology, Goa University, Taleigao Plateau, Goa 403 206, India
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Panitlertumpai N, Nakbanpote W, Sangdee A, Thumanu K, Nakai I, Hokura A. Zinc and/or cadmium accumulation in Gynura pseudochina (L.) DC. studied in vitro and the effect on crude protein. J Mol Struct 2013. [DOI: 10.1016/j.molstruc.2012.11.062] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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Rodríguez-Llorente ID, Lafuente A, Doukkali B, Caviedes MA, Pajuelo E. Engineering copper hyperaccumulation in plants by expressing a prokaryotic copC gene. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2012; 46:12088-12097. [PMID: 23020547 DOI: 10.1021/es300842s] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/01/2023]
Abstract
In this work, engineering Cu-hyperaccumulation in plants was approached. First, the copC gene from Pseudomonas sp. Az13, encoding a periplasmic Cu-binding protein, was expressed in Arabidopsis thaliana driven by the CaMV35S promoter (transgenic lines 35S-copC). 35S-copC lines showed up to 5-fold increased Cu accumulation in roots (up to 2000 μg Cu. g(-1)) and shoots (up to 400 μg Cu. g(-1)), compared to untransformed plants, over the limits established for Cu-hyperaccumulators. 35S lines showed enhanced Cu sensitivity. Second, copC was engineered under the control of the cab1 (chlorophyll a/b binding protein 1) promoter, in order to drive copC expression to the shoots (transgenic lines cab1-copC). cab1-copC lines showed increased Cu translocation factors (twice that of wild-type plants) and also displayed enhanced Cu sensitivity. Finally, subcellular targeting the CopC protein to plant vacuoles was addressed by expressing a modified copC gene containing specific vacuole sorting determinants (transgenic lines 35S-copC-V). Unexpectedly, increased Cu-accumulation was not achieved-neither in roots nor in shoots-when compared to 35S-copC lines. Conversely, 35S-copC-V lines did display greatly enhanced Cu-hypersensitivity. Our results demonstrate the feasibility of obtaining Cu-hyperaccumulators by engineering a prokaryotic Cu-binding protein, but they highlight the difficulty of altering the exquisite Cu homeostasis in plants.
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Diversity and heavy metal tolerance of endophytic fungi from six dominant plant species in a Pb–Zn mine wasteland in China. FUNGAL ECOL 2012. [DOI: 10.1016/j.funeco.2011.06.002] [Citation(s) in RCA: 81] [Impact Index Per Article: 6.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
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Khandare RV, Rane NR, Waghmode TR, Govindwar SP. Bacterial assisted phytoremediation for enhanced degradation of highly sulfonated diazo reactive dye. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2012; 19:1709-1718. [PMID: 22161298 DOI: 10.1007/s11356-011-0679-x] [Citation(s) in RCA: 47] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/10/2011] [Accepted: 11/22/2011] [Indexed: 05/31/2023]
Abstract
PURPOSE Phytoremediation is the exploitation of plants and their rhizospheric microorganisms for pollutants treatment like textile dyes, which are toxic, carcinogenic and mutagenic from the effluent. The purpose of this work was to explore a naturally found plant and bacterial synergism to achieve an enhanced degradation of Remazol Black B dye (RBB). METHODS In vitro cultures of Zinnia angustifolia were obtained by seed culture method. Enzymatic analysis of the plant roots and Exiguobacterium aestuarii strain ZaK cells was performed before and after decolorization of RBB. Metabolites of RBB formed after its degradation were analyzed using UV-Vis spectroscopy, high-performance liquid chromatography (HPLC), Fourier transform infrared (FTIR) and gas chromatography-mass spectrometry (GC-MS). Phytotoxicity studies were performed. RESULTS The consortium ZE was found to be more efficient than individual plant and bacteria. Z. angustifolia roots showed significant induction in the activities of lignin peroxidase, laccase, DCIP reductase and tyrosinase during dye decolorization. E. aestuarii showed significant induction in the activities of veratryl alcohol oxidase, azo reductase and DCIP reductase. Analysis of metabolites revealed differential metabolism of RBB by plant, bacteria and consortium ZE. E. aestuarii and Z. angustifolia led to the formation of 3,6-diamino-4-hydroxynaphthalene-2-sulfonic acid, (ethylsulfonyl)benzene, and 3,4,6-trihydroxynaphthalene-2-sulfonic acid and propane-1-sulfonic acid, respectively, whereas consortium ZE produced 4-hydroxynaphthalene-2-sulfonic acid, naphthalene-2-sulfonic acid and 4-(methylsulfonyl)phenol. The phytotoxicity study revealed the nontoxic nature of the metabolites formed after dye degradation. CONCLUSION Consortium ZE was found to be more efficient and faster in the degradation of RBB when compared to degradation by Z. angustifoila and E. aestuarii individually.
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Affiliation(s)
- Rahul V Khandare
- Department of Biotechnology, Shivaji University, Kolhapur, India
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Hartley W, Riby P, Dickinson NM, Shutes B, Sparke S, Scholz M. Planting woody crops on dredged contaminated sediment provides both positive and negative effects in terms of remediation. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2011; 159:3416-3424. [PMID: 21903313 DOI: 10.1016/j.envpol.2011.08.030] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/17/2011] [Revised: 08/09/2011] [Accepted: 08/15/2011] [Indexed: 05/31/2023]
Abstract
There is currently a requirement for studies focusing on the long-term sustainability of phytoremediation technologies. Trace element uptake by Salix, Populus and Alnus species planted in dredged contaminated canal sediment and concentrations in sediment and pore waters were investigated, eight years after a phytoremediation trial was initiated in NW England. Soil biological activity was also measured using invertebrate and microbial assays to determine soil quality improvements. Zinc was the dominant trace metal in foliage and woody stems, and the most mobile trace element in sediment pore water (~14 mg l(-1)). Biological activity had improved; earthworm numbers had increased from 5 to 24, and the QBS index (an index of microarthropod groups in soil) had increased from 70 to 88. It is concluded that biological conditions had improved and natural processes appear to be enhancing soil quality, but there remains a potential risk of trace element transfer to the wider environment.
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Affiliation(s)
- William Hartley
- School of Computing, Science and Engineering, The University of Salford, Cockcroft Building, Salford M5 4WT, UK
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Monaci F, Leidi EO, Dolores MM, Valdés BO, Rossini SS, Bargagli R. Selective uptake of major and trace elements in Erica andevalensis, an endemic species to extreme habitats in the Iberian Pyrite Belt. J Environ Sci (China) 2011; 23:444-452. [PMID: 21520814 DOI: 10.1016/s1001-0742(10)60429-9] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/30/2023]
Abstract
To assess the ecophysiological traits and the phytoremediation potential of the endemic heather Erica andevalensis, we determined the concentrations of major and trace elements in different plant parts and in rizosphere soils from Riotinto mining district (Huelva, Spain). The results showed that E. andevalensis may grow on substrates with very high As, Cu, Fe and Pb concentrations (up to 4114, 1050, 71900 and 15614 microg/g dry weight, respectively), very low availability of macro- and micronutrients and with pH values ranging from 3.3 to 4.9. In these harsh edaphic conditions E. andevalensis selectively absorbed and translocated essential nutrients and excludes potentially phytotoxic elements, which were accumulated in the root epidermis. The concentrations of major and trace elements in E. andevalensis aerial parts from the Riotinto mining district were in the normal range for plants; likewise other Erica species it accumulated Mn and only in a very polluted site we measured leaf concentrations of As and Pb within the excessive or toxic limits for plants. Differently from previous studies, which emphasized the soil pH and bioavailability of phytotoxic elements as the main stress factors, this study showed that in the Riotinto region, E. andevalensis can tolerate wide range of pH and toxic element concentrations; the harshest environments colonized by monospecific patches of this species were characterized above all by very low availability of nutrients. The extraordinary capability to adapt to these extreme habitats made E. andevalensis a priority species to promote the phytostabilization and the development of a self-sustaining vegetative cover on Riotinto mine tailings.
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Affiliation(s)
- Fabrizio Monaci
- Department of Environmental Sciences G. Sarfatti, University of Siena, Via PA. Mattioli, 4, Siena 53100, Italy.
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Leblebici Z, Aksoy A. Growth and Lead Accumulation Capacity of Lemna minor and Spirodela polyrhiza (Lemnaceae): Interactions with Nutrient Enrichment. WATER, AIR, AND SOIL POLLUTION 2011; 214:175-184. [PMID: 21258435 PMCID: PMC3003148 DOI: 10.1007/s11270-010-0413-1] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/18/2009] [Accepted: 03/23/2010] [Indexed: 05/11/2023]
Abstract
A study to understand the biological effects of samples prepared with lead and the effects of lead were conducted on Lemna minor L. and Spirodela polyrhiza (L.) Schleid. This study was intended to test the hypothesis that nutrient enrichment (P, NO(3) (-)-N and SO(4) (2-)) enhances the metal tolerance of floating macrophytes. The plants were exposed to Pb concentrations 0, 1, 5, 10, 25, and 50 mg l(-1) for a period of 1, 3, 5, and 7 days. L. minor accumulated 561 mg g(-1) dry weight (dw) Pb, and S. polyrhiza accumulated 330 mg g(-1) dw Pb after 7 days, whereas in the groups enriched with nutrients, L. minor accumulated 128.7 mg g(-1) Pb and S. polyrhiza accumulated 68.7 mg g(-1) dw Pb after 7 days. Relative growth rates and photosynthetic pigments (chlorophyll a, b, and carotenoid) were measured in L. minor and S. polyrhiza exposed to different Pb concentrations under laboratory conditions. Relative growth rates were negatively correlated with metal exposure, but nutrient addition was found to suppress this effect. Photosynthetic pigment levels were found negatively correlated with metal exposure, and nutrient addition attenuated chlorophyll decrease in response to metal exposure. Metal and nutrient concentration in water decreased throughout the experiments. The study concluded that nutrient enrichment increases the tolerance of L. minor and S. polyrhiza to metals, that L. minor and S. polyrhiza are suitable candidates for the phytoremediation of low-level lead pollution, and that L. minor was more effective in extracting lead than was S. polyrhiza.
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Affiliation(s)
- Zeliha Leblebici
- Faculty of Science and Arts Department of Biology, Erciyes University, 38039 Kayseri, Turkey
| | - Ahmet Aksoy
- Faculty of Science and Arts Department of Biology, Erciyes University, 38039 Kayseri, Turkey
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Haferburg G, Kothe E. Metallomics: lessons for metalliferous soil remediation. Appl Microbiol Biotechnol 2010; 87:1271-80. [PMID: 20532755 DOI: 10.1007/s00253-010-2695-z] [Citation(s) in RCA: 42] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/19/2010] [Revised: 05/19/2010] [Accepted: 05/19/2010] [Indexed: 10/19/2022]
Abstract
The term metallomics has been established for the investigation of transcriptome, proteome, and metabolome changes induced by metals. The mechanisms allowing the organisms to cope with metals in the environment, metal resistance factors, will in turn change biogeochemical cycles of metals in soil, coupling the metal pool with the root system of plants. This makes microorganisms key players in introducing metals into food webs, as well as for bioremediation strategies. Research on physiological and metabolic responses of microorganisms on metal stress in soil is thus essential for the selection of optimized consortia applicable in bioremediation strategies such as bioaugmentation or microbially enhanced phytoextraction. The results of metallomics studies will help to develop applications including identification of biomarkers for ecotoxicological studies, bioleaching, in situ soil regeneration, and microbially assisted phytoremediation of contaminated land. This review will therefore focus on the molecular understanding of metal resistance in bacteria and fungi, as can be derived from metallomics studies.
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Affiliation(s)
- Götz Haferburg
- Institute of Microbiology, Friedrich Schiller University, Neugasse 25, 07743 Jena, Germany.
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