The responses of bacterial community and N2O emission to nitrogen input in lake sediment: Estrogen as a co-pollutant

New insights into the sustainable use of co-pyrolyzed dredged sediment for the in situ remediation of Cd polluted sediments in coastal rivers

The remediation of Cd-polluted sediment in coastal rivers is essential because of its potential hazards to river and marine ecosystems. Herein, a co-pyrolysis product of contaminated dredged sediment (S@BC) was innovatively applied to cap and immobilize Cd-contaminated sediment in coastal rivers in situ, and their remediation efficiencies, mechanisms, and microbial responses were explored based on a 360 d incubation experiment. The results showed that although S@BC immobilization and capping restrained sediment Cd release to the overlying water, S@BC capping presented a high inhibitory efficiency (66.0% vs. 95.3% at 360 d). Fraction analysis indicated that labile Cd was partially transformed to stable fraction after remediation, with decreases of 0.5%- 32.7% in the acid-soluble fraction and increases of 5.0%- 182.8% in the residual fraction. S@BC immobilization and capping had minor influences on the sediment bacterial community structure compared to the control. S@BC could directly adsorb sediment mobile Cd (precipitation and complexation) to inhibit Cd release and change sediment properties (e.g., pH and cation exchange capacity) to indirectly reduce Cd release. Particularly, S@BC capping also promoted Cd stabilization by enhancing the sediment sulfate reduction process. Comparatively, S@BC capping was a priority approach for Cd-polluted sediment remediation. This study provides new insights into the remediation of Cd-contaminated sediments in coastal rivers.

Changes in the transformation of nitrogen and phosphorus under different microbial communities in sewage pipes

Microbial communities living in different environments can affect the transformation of nitrogen and phosphorus in sewage pipes. Two different environments were simulated to investigate the differences in the transformation of nitrogen and phosphorus under different microbial communities in the pipe. Results showed that the concentration of nitrogen and phosphorus changed greatly in the first 25-33 days and the first 21 days, respectively, and then remained stable. The decrease in amino acid nitrogen (AAN) concentration and the increase in ammonia nitrogen (NH4 + -N) concentration in the sediments were evident in the contrast group. The concentrations of total phosphorus (TP), dissolved total phosphorus (DTP), and dissolved reactive phosphorus (DRP) in the overlying water and interstitial water decreased, and that of TP in the sediment increased. Some microorganisms in the sediments of both groups are related to the transformation of nitrogen and phosphorus, such as Clostridium_sensu_stricto_1, Sporacetigenium, Norank_f__Anaerolineaceae, Norank_f__norank_o__PeM15, and Caldisericum. The relative abundance of these microorganisms was remarkably differed between the two groups, which partly caused the difference in nitrogen and phosphorus transformation among overlying water, interstitial water, and sediment in the two environments. PRACTITIONER POINTS: The concentration of N and P changed greatly in the first 20-30 days. AAN and NH4 + -N in sediments had greater concentration variation in contrast group. In two groups, TP, DTP, and DRP of water decreased, and TP of sediment increased. Microbe related to the transformation of N and P differed between the two groups.

Response of the nitrogen processing bacterial community to water level fluctuation and nitrate availability in an intact marsh soil column

Wetlands are known to experience fluctuations in water levels and receive exogenous nitrogen inputs that affect various organisms, including soil microorganisms. To study the impact of these factors on microbial diversity, we collected intact soil columns from a Phragmites australis-dominated site in the Qixing River National Nature Reserve in Northeast China. In a laboratory experiment, we simulated water level fluctuations and exogenous nitrogen inputs to the soil columns and examined the associated changes in the relative abundance of 51 bacterial genera involved in nitrogen cycling processes. Our findings revealed that different bacterial genera exhibited varying relative abundances across treatments. Specifically, Massilia showed the highest total relative abundance at the genus level, while Planctomyces had the second highest, and Campylobacter had the lowest abundance. The DESeq2 model, based on negative binomial distribution, revealed that the tags of bacterial genera were significantly correlated with soil depth, but not with water levels or nitrogen concentrations. However, the addition of a 30 mg/L nitrate solution caused a decrease in the relative abundances of bacterial genera with decreasing water levels, while a 60 mg/L concentration of nitrogen resulted in a decrease and then an increase in the relative abundances of bacterial genera with decreasing water levels. Our study provides valuable insights into the response of nitrogen-cycling bacteria to changes in different environmental conditions.

Pollution abatement reducing the river N2O emissions although it is partially offset by a warming climate: Insights from an urbanized watershed study

Global nitrogen (N) pollution has resulted in increased river nitrous oxide (N₂O) emissions, which contribute to climate change. However, little is known about how pollution abatement conversely reduces river N₂O production in a warming climate. Here, field observations and microcosmic experiments were conducted in a coastal urbanized watershed (S.E. China) to explore the interactive effect of changing nitrate and temperature on river sediment denitrification (DNF) and N₂O production. The results showed that urban river reaches (UR) with higher organic carbon content and denitrifying gene abundance in sediments have a greater DNF rate, nitrate removal efficiency (NRE), and N₂O concentration than agricultural river reaches (AR). Microcosmic incubation suggested that the DNF rate and associated N₂O production decreased under low nitrate addition, wherein the NRE increased. The scenario simulation illustrated a nonlinear response of N₂O production to nitrate removal (i.e., ΔN₂O/ΔNO₃-N) from both UR and AR sediments at a given temperature, and the DNF rate and N₂O production increased with increasing temperature. An increase in temperature by 1 degree Celsius would offset 18.75% of the N₂O reduction by nitrate removal via DNF. These findings implied that watershed pollution abatement undoubtedly contributes to the reduction in global river N₂O emissions although it is partially offset by extra N₂O production caused by global warming.

Potamogeton crispus restoration increased the epiphytic microbial diversity and improved water quality in a micro-polluted urban river

Special characterization and assembly of epiphytic microbial communities remain unclear in micro-polluted water column during submersed macrophytes restoration. In this study, an in-situ enclosure area sowing with turions of Potamogeton crispus (P. crispus) was conducted in a micro-polluted urban river to investigate the characterization of P. crispus and epiphytic microbial communities and their response to water environment under different water depths. Turions completely germinated in water column with <90 cm water depth and the germination speed decreased with increasing water depth within 18 days. There were obvious differences in morphological characteristics of P. crispus between deep and shallow water layers. P. crispus restoration decreased by 12-32%, 13-36%, 9-43% and 5-36% of COD, NH₄⁺-N, TN and TP concentration, respectively, in enclosed overlying water compared to the river (P < 0.05) during 5 months of experiment. Illumina sequencing was employed to explore the epiphytic bacterial and microeukayotic communities at water depth 25-35 cm (shallow area) and 80-90 cm (deep area). A total of 9 bacterial and 12 microeukayotic dominant phyla were obtained in eight samples. It should be noted that the algae abundances were higher in shallow area than deep area but a reverse trend was observed for methanotrophs. Null model analysis revealed that dispersal limitation and undominated process was the most important assembly process, whereas stochastic processes gained more importance in shallow area than deep one. According to cooccurrence analysis (|r| > 0.6, P < 0.05), there were more strongly correlated edges in shallow area (456 edges) than deep area (340 edges). These results highlight that submerged macrophytes restoration can increase microbial diversity and improve water quality, and provide a "summer disease cured in winter" way by using could-resistant P. crispus for water purification in micro-polluted rivers in low-temperature season.

Effects of Nitrogen Input on Community Structure of the Denitrifying Bacteria with Nitrous Oxide Reductase Gene (nosZ I): a Long-Term Pond Experiment

Excessive nitrogen (N) input is an important factor influencing aquatic ecosystems and has received increasing public attention in the past decades. It remains unclear how N input affects the denitrifying bacterial communities that play a key role in regulating N cycles in various ecosystems. To test our hypothesis-that the abundance and biodiversity of denitrifying bacterial communities decrease with increasing N-we compared the abundance and composition of denitrifying bacteria having nitrous oxide reductase gene (nosZ I) from sediments (0-20 cm) in five experimental ponds with different nitrogen fertilization treatment (TN10, TN20, TN30, TN40, TN50) using quantitative PCR and pyrosequencing techniques. We found that (1) N addition significantly decreased nosZ I gene abundance, (2) the Invsimpson and Shannon indices (reflecting biodiversity) first increased significantly along with the increasing N loading in TN10-TN40 followed by a decrease in TN50, (3) the beta diversity of the nosZ I denitrifier was clustered into three groups along the TN concentration levels: Cluster I (TN50), Cluster II (TN40), and Cluster III (TN10-TN30), (4) the proportions of Alphaproteobacteria and Betaproteobacteria in the high-N treatment (TN50) were significantly lower than in the lower N treatments (TN10-TN30). (5) The TN concentration was the most important factor driving the alteration of denitrifying bacteria assemblages. Our findings shed new light on the response of denitrification-related bacteria to long-term N loading at pond scale and on the response of denitrifying microorganisms to N pollution.

Prokaryotic communities adapted to microhabitats on the Indian lotus (Nelumbo nucifera) growing in the high-altitude urban Dal Lake

Indian lotus (Nelumbo nucifera) is one of the dominant aquatic plants cultivated in Dal Lake, situated at 1586 m above mean sea level (MSL) in the northeast of Srinagar, Kashmir. Despite their economic and ecological role, the microbial communities associated with the lotus plant are still unexplored. In this study, we investigated the prokaryotic communities on surfaces of different lotus microhabitats (roots, rhizome, leaves, flowers, and fruits), lake water, and sediments using 16S rRNA gene amplicon sequencing. Overall, prokaryotic diversity decreased significantly on the surface of lotus microhabitats in comparison to the lake water and sediments. Among the microhabitats of lotus, roots and leaves harbored more diverse communities in comparison to rhizomes, fruits, and flowers. A total of 98 genera were shared by lotus and the Dal Lake sediments and water. However, significant differences were found in their relative abundance; for example, Pseudomonas was the most dominant genus on the majority of lotus microhabitats. On the other hand, Flavobacterium was highly abundant in the lake water, while a higher abundance of Acinetobacter was recorded in sediments. Additionally, we also noted the presence of potential human pathogenic genera including Escherichia-Shigella, Enterobacter, Pantoea, Raoultella, Serratia, and Sphingomonas on the lotus microhabitats. Predicted functions of prokaryotic communities revealed a higher abundance of genes associated with nutrient uptake in the microhabitats of the lotus. This study offered first-hand information on the prokaryotic communities harbored by lotus plants and water and sediments of the Dal Lake and demonstrated the adaptation of diverse communities to microhabitats of lotus.

The Effects of Paroxetine on Benthic Microbial Food Web and Nitrogen Transformation in River Sediments

Paroxetine is a common pharmaceutical to treat depression and has been found to pose threats to aquatic organisms. However, little is known about the effects of paroxetine on the nutrient cycle in aquatic environments. Therefore, DNA metabarcoding is used in this study to analyze the effects of paroxetine on multi-trophic microorganisms and nitrogen transformation in river sediments. Although paroxetine has no significant effect on the diversity of microbenthos, changes in benthic nitrogen-converting bacteria are consistent with the change in the various forms of nitrogen in the sediment, indicating that paroxetine affects the nitrogen conversion process by affecting nitrogen-converting bacteria. In addition, it is found that paroxetine has the ability to influence nitrogen transformation in an indirect way by affecting the trophic transfer efficiency of higher trophic levels (meiofauna and protozoa, protozoa and protozoa), subsequently affecting the growth of nitrogen-converting bacteria through a top-down mechanism (i.e., predation).The results show that paroxetine affects nitrogen transformation directly by affecting nitrogen-converting bacteria and indirectly through top-down effects, emphasizing that the assessment of paroxetine's ecological risks should consider species within different trophic levels.

Effects of long-term exposure to silver nanoparticles on the structure and function of microplastic biofilms in eutrophic water

Microplastics are frequently detected in natural aquatic systems proximate to populated areas, such as urban rivers and lakes, and can be rapidly colonized by microbial communities. Microplastics and silver nanoparticles (AgNPs) share similar pathways into natural waters and tend to form heteroaggregations. However, very little is known about the long-term impacts on the structure and function of microplastic biofilms when chronically exposed to silver nanoparticles. Thus, the present study assessed the accumulation property of AgNPs on polymethyl methacrylate (PMMA) microplastics via adsorption tests and studied the chronic effects of AgNPs on the structure and function of microplastic biofilms via 30-day microcosmic experiments in eutrophic water. The adsorption tests showed that the biofilms-colonized PMMA microplastics presented the highest adsorption of 0.98 mg/g in the 1 mg/L AgNPs microcosms. After the 30-day exposure, lactic dehydrogenase release and reactive oxygen species generation of PMMA biofilms increased by 33.23% and 23.98% compared to the MPs-control group with no-AgNPs, indicating that the number of dead cells colonizing microplastics significantly increased. Network analysis suggested that the stabilization of the bacterial community declined with the long-term exposure to AgNPs through the reduction of the modularity and average path length of the network. Compared to the MPs-control group, long-term exposure to AgNPs caused cumulatively inhibitory effects on the nitrogen removal and the N₂O emissions in eutrophic water. The isotopomer analysis revealed that the contribution rate of NO₂^- reduction to N₂O emissions was gradually increasing with the AgNPs exposure. Real-time PCR analysis showed that denitrification genes were less sensitive to AgNPs than the nitrification genes, with gene nosZ performed the most negligible response. Overall, our results revealed that long-term exposure to AgNPs could alter biogeochemical cycling involved by microplastic biofilms and cumulatively reduce the self-recovery of the eutrophic ecosystem.

Distinctive Microbial Processes and Controlling Factors Related to Indirect N2O Emission from Agricultural and Urban Rivers in Taihu Watershed

Inland rivers are hotspots of anthropogenic indirect nitrous oxide (N₂O) emissions, but the underlying microbial processes remain poorly understood. This study measured N₂O fluxes from agricultural and urban rivers in Taihu watershed and investigated the microbial processes driving N₂O production and consumption. The N₂O fluxes were significantly higher in agricultural rivers (140.1 ± 89.1 μmol m^-2 d^-1) than in urban rivers (25.1 ± 27.0 μmol m^-2 d^-1) (p < 0.001). All wind-based models significantly underestimated N₂O flux in urban rivers (p < 0.05) when using the Intergovernmental Panel on Climate Change method because they underestimated the N₂O emission factor (EF_5r). Wind speed and nitrate were the key factors affecting N₂O fluxes in agricultural and urban rivers, respectively. NirK-type denitrifiers produced N₂O in urban river water, while nirS-type denitrifiers consumed N₂O in the sediments of all rivers. Co-occurrence network analysis indicated organics from Microcystis served as electron donors for denitrifiers (dominated by Flavobacterium) in water, while direct interspecies electron transfer between Thiobacillus and methanogens and between Dechloromonas and sulfate-reducing bacteria enhanced N₂O reduction in sediments. This study advances our knowledge on the distinctive microbial processes that determine N₂O emissions in inland rivers and illustrates the need to revise EF_5r for N₂O estimation in urban rivers.

High Salinity Inhibits Soil Bacterial Community Mediating Nitrogen Cycling

Salinization is considered a major threat to soil fertility and agricultural productivity throughout the world. Soil microbes play a crucial role in maintaining ecosystem stability and function (e.g., nitrogen cycling). However, the response of bacterial community composition and community-level function to soil salinity remains uncertain. Here, we used multiple statistical analyses to assess the effect of high salinity on bacterial community composition and potential metabolism function in the agricultural ecosystem. Results showed that high salinity significantly altered both bacterial alpha (Shannon-Wiener index and phylogenetic diversity) and beta diversity. Salinity, total nitrogen (TN), and soil organic matter (SOM) were the vital environmental factors shaping bacterial community composition. The relative abundance of Actinobacteria, Chloroflexi, Acidobacteria, and Planctomycetes decreased with salinity, whereas Proteobacteria and Bacteroidetes increased with salinity. The modularity and the ratio of negative to positive links remarkedly decreased, indicating that high salinity destabilized bacterial networks. Variable selection, which belongs to deterministic processes, mediated bacterial community assembly within the saline soils. Function prediction results showed that the key nitrogen metabolism (e.g., ammonification, nitrogen fixation, nitrification, and denitrification processes) was inhibited in high salinity habitats. MiSeq sequencing of 16S rRNA genes revealed that the abundance and composition of the nitrifying community were influenced by high salinity. The consistency of function prediction and experimental verification demonstrated that high salinity inhibited soil bacterial community mediating nitrogen cycling. Our study provides strong evidence for a salinity effect on the bacterial community composition and key metabolism function, which could help us understand how soil microbes respond to ongoing environment perturbation. IMPORTANCE Revealing the response of the soil bacterial community to external environmental disturbances is an important but poorly understood topic in microbial ecology. In this study, we evaluated the effect of high salinity on the bacterial community composition and key biogeochemical processes in salinized agricultural soils (0.22 to 19.98 dS m^-1). Our results showed that high salinity significantly decreased bacterial diversity, altered bacterial community composition, and destabilized the bacterial network. Moreover, variable selection (61% to 66%) mediated bacterial community assembly within the saline soils. Functional prediction combined with microbiological verification proved that high salinity inhibited soil bacterial community mediating nitrogen turnover. Understanding the impact of salinity on soil bacterial community is of great significance for managing saline soils and maintaining a healthy ecosystem.

Dissolved oxygen disturbs nitrate transformation by modifying microbial community, co-occurrence networks, and functional genes during aerobic-anoxic transition

No consensus has been achieved among researchers on the effect of dissolved oxygen (DO) on nitrate (NO₃^--N) transformation and the microbial community, especially during aerobic-anoxic transition. To supplement this knowledge, NO₃^--N transformation, microbial communities, co-occurrence networks, and functional genes were investigated during aerobic-anoxic transition via microcosm simulation. NO₃^--N transformation rate in the early stage (DO ≥2 mg/L) was always significantly higher than that in the later stage (DO <2 mg/L) during aerobic-anoxic transition, and NO₂^--N accumulation was more significant during the anoxic stage, consistent with the result obtained under constant DO conditions. These NO₃^--N transformation characteristics were not affected by other environmental factors, indicating the important role of DO in NO₃^--N transformation during aerobic-anoxic transition. Changes in DO provoked significant alterations in microbial diversity and abundance of functional bacteria dominated by Massilia, Bacillus, and Pseudomonas, leading to the variation in NO₃^--N transformation. Co-occurrence network analysis revealed that NO₃^--N transformation was performed by the interactions between functional bacteria including symbiotic and competitive relationship. In the presence of oxygen, these interactions accelerated the NO₃^--N transformation rate, and bacterial metabolization proceeded via increasingly varied pathways including aerobic and anoxic respiration, which was demonstrated through predicted genes. The higher relative abundance of genes narG, narH, and napA suggested the occurrence of coupled aerobic-anoxic denitrification in the early stage. NO₃^--N transformation rate decreased accompanied by a significant NO₂^--N accumulation with the weakening of coupled aerobic-anoxic denitrification during aerobic-anoxic transition. Structural equation modeling further demonstrated the relationship between DO and NO₃^--N transformation. DO affects NO₃^--N transformation by modifying microbial community, bacterial co-occurrence, and functional genes during aerobic-anoxic transition.

Nonlinear pattern and algal dual-impact in N2O emission with increasing trophic levels in shallow lakes

Shallow lakes are considered important contributors to emissions of nitrous oxide (N₂O), a powerful greenhouse gas, in aquatic ecosystems. There is a large degree of uncertainty regarding the relationship between N₂O emissions and the progress of lake eutrophication, and the mechanisms underlying N₂O emissions are poorly understood. Here, N₂O emission fluxes and environmental variables in different lakes along a trophic state gradient in the Yangtze River basin were studied. N₂O emission fluxes were -1.0-53.0 μg m^-2 h^-1 and 0.4-102.9 μg m^-2 h^-1 in summer and winter, respectively, indicating that there was marked variation in N₂O emissions among lakes of different trophic state. The non-linear exponential model explained differences in N₂O emission fluxes by the degree of eutrophication (p < 0.01). TN and chl-a both predicted 86% of the N₂O emission fluxes in shallow lakes. The predicted N₂O emission fluxes based on the IPCC EF_5r overestimated the observed fluxes, particularly those in hyper-eutrophic lakes. These findings demonstrated that nutrient-rich conditions and algal accumulation are key factors determining N₂O emission fluxes in shallow lakes. Furthermore, this study also revealed that temperature and algae accumulation-decomposition determine an N₂O emission flux in an intricate manner. A low temperature, i.e., winter, limits algae growth and low oxygen consumption for algae decomposition. The environment leaves a high dissolved oxygen concentration, slowing down N₂O consumption as the final step of denitrification. In summer, with the oxygen consumed by excess algal decomposition, the N₂O production is limited by the complete denitrification as well as the limited substrate supply of nitrate by nitrification in hypoxic or anoxic conditions. Such cascading events explained the higher N₂O emission fluxes from shallow lakes in winter compared with summer. This trend was amplified in hyper-eutrophic shallow lakes after algal disappearance. Collectively, algal accumulation played a dual role in stimulating and impeding N₂O emissions, especially in hyper-eutrophic lakes. This study expands our knowledge of N₂O emissions from shallow lakes in which eutrophication is underway.

Recovery trajectories and community resilience of biofilms in receiving rivers after wastewater treatment plant upgrade

Wastewater treatment plant (WWTP) upgrades can reduce both nutrient and micropollutant emissions into receiving rivers, thus modifying the composition and function of biological communities. However, how microbial communities vary and whether they can be restored to levels found in less-polluted rivers remains uncertain. Aquatic biofilms are sensitive to environmental change and respond rapidly to bottom-up pressure. Thus, we used 12 flumes configured in three experimental treatments to mimic the dynamic processes of biofilm microbial communities occurring in a wastewater-receiving river following WWTP upgrade, with rivers containing two levels of nutrients and micropollutants used as references. We compared the biofilm microbial biomass, carbon source utilization, and community composition among the three "blocks". Results showed that the metabolic patterns of the carbon sources and composition of the biofilm bacterial communities in the flumes mimicking a receiving river with WWTP upgrade recovered over time to those mimicking a less-disturbed river. The restoration of potential carboxylic acid-consuming denitrifying bacteria (i.e., Zoogloea, Comamonas, Dechloromonas, and Acinetobacter) likely played a significant role in this process. Combining quantitative analysis of the denitrification genes nirS and nosZ, we confirmed that the denitrification function of the river biofilms recovered after WWTP upgrade, consistent with our previous field investigation.

Nitrogen species control the interaction between NO3--N reduction and aniline degradation and microbial community structure in the oxic-anoxic transition zone

Contrary to the fact that NO₃^--N can serve as electron acceptor to promote organics degradation, it was also found NO₃^--N reduction does not necessarily promote organics degradation. We speculate nitrogen (N) species may control the interaction between NO₃^--N reduction and organics degradation via shifting related microbial community structure. To prove the hypothesis, oxic-anoxic transition zone (OATZ) microcosms simulated by lake water and sediment were conducted with the addition of N species (NO₃^--N, NO₂^--N, and NH₄⁺-N) and aniline as typical organics. High-throughput sequencing was used to analyze the microbial community structure and functional enzyme in the microcosms. Results show that, NO₂^--N inhibited NO₃^--N reduction while enhanced aniline degradation. For NH₄⁺-N, it promoted NO₃^--N reduction when NH₄⁺-N/NO₃^--N concentration ratio ≤ 2 and inhibited aniline degradation when NH₄⁺-N/aniline concentration ratio ≥ 0.5. The presence of NO₂^--N or NH₄⁺-N weakened the interaction between NO₃^--N reduction and aniline degradation, which might be caused by significant changes in the diversity and abundance of microbial communities controlled by N species. The microbial mechanism indicates that NO₂^--N weakened the interaction by affecting both denitrification enzyme activity and electron transfer capability, while NH₄⁺-N weakened the interaction mainly by affecting electron transfer capability. These results imply that N species, as well as other electron acceptors and donors, in the contaminated OATZ should be fully considered, when performing in situ remediation technology of NO₃^--N reduction.

Response of periphytic biofilm in water to estrone exposure: Phenomenon and mechanism

The responses of pure strains to contaminant (i.e., estrone, E1) exposure have been widely studied. However, few studies about the responses of multispecies microbial aggregates (e.g., periphytic biofilm) to E1 exposure are available. In this study, the changes in physiological activity and community composition of periphytic biofilms before and after E1 exposure were investigated. The results showed that periphytic biofilms exhibited high adaptability to E1 exposure at a concentration of 0.5 mg L^-1 based on physiological results. The increase in productivity of extracellular polymeric substances (EPS) after exposure to E1 was the main factor preventing association between E1 and microbial cells. The increase in the activity of superoxide dismutase (SOD) and ATP enzyme activity and the change in the co-occurrence pattern of microbial communities (increasing the relative abundance of Xanthomonadaceae and Cryomorphacea) also protected biofilms from E1 exposure. However, exposure to a high concentration of E1 (>10 mg L^-1) significantly decreased EPS productivity and metabolic activity due to the excessive accumulation of reactive oxygen species. In addition, the abundance of some sensitive species, such as Pseudanabaenaceae, decreased sharply at this concentration. Overall, this study highlighted the feasibility of periphytic biofilms to adapt to E1 exposure at low concentrations in aquatic environments.

Developing a statistical-weighted index of biotic integrity for large-river ecological evaluations

The efficiency, accuracy and universality of ecological assessment methods comprise an important foundation for comprehensive assessment and restoration of large river ecological health at the watershed scale. New evaluation metrics and methods are urgently needed to be developed to adapt the characteristics of large rivers, including geographical differences in surface runoff, regional ecological complexity, and seasonal changes. In this study, a bacteria-weighted index of biotic integrity was developed to assess the ecological health of large rivers (lrBW-IBI) based on compositional and functional characteristics of sediment bacterial communities from 33 sections of the lower mainstream of Yangtze River. Five key metrics were determined by range, responsiveness, and redundancy tests. Principal component analysis (PCA), entropy method, criteria importance through intercriteria correlation and random forest were applied to calculate weighted coefficients of key metrics. The optimal lrBW-IBI was observed through the sum of PCA weighted-metrics: the relative abundance of Latescibacteria (0.234), Gemmatimonadaceae (0.149), Nitrospira spp. (0.234), Rhizobiales (0.228), and nitrogenase NifH (0.156). According to PCA based lrBW-IBI, 12.12%, 24.24%, 39.39%, and 24.24% of river sections were labeled excellent, good, moderate, and relatively poor, respectively. The ecological status of the lower mainstream of the Yangtze River did not change significantly across seasons but declined gradually from upstream to downstream. This study provides a new assessment tool for the ecological health of large rivers and highlights the importance of microbial ecological index in river ecology.

Nitrous oxide emission from stormwater biofilters in alternating dry and wet weather

The nitrous oxide (N₂O) flux and its possible production pathways from stormwater biofilters in response to moisture content (MC) due to a shift from dry to wet weather was investigated. In this study, we evaluated the changes in the composition of the bacterial community, the relative abundance of functional genes, and N₂O emission rate in laboratory-scale stormwater biofilters in response to changes of MC. The results indicated that N₂O flux correlated positively with soil MC (r = 0.722 p < 0.01). We observed a higher rates of N₂O flux when shifting from dry to wet conditions. Notably, these values decreased substantially within 8-24 h in response to the rapid decline in MC, and then gradually decreased and stabilized at 4.4-12.0 μg/m²·h. The relative abundance of ammonia-oxidizing and denitrifying bacteria, as well as the relative abundance of functional groups associated with denitrification was higher under conditions of low soil MC than those in the high MC. Furthermore, the abundance of bacterial genes norB (r = 0.716 p < 0.01) and hao (r = 0.917 p < 0.01) was associated with higher N₂O emission in high MC soils. Studies with the stable isotope (¹⁵N) revealed that ¹⁵N enrichment in N₂O was primarily via denitrification pathways and labeled ammonium ion (¹⁵NH₄⁺). Taken together, our results suggested that nitrifier denitrification is the main pathway generating N₂O emission in soils with high MC, which may be caused by the high molar ratio of NH₃ to total nitrogen in the influent.

Characteristics and metabolic pathway of the bacteria for heterotrophic nitrification and aerobic denitrification in aquatic ecosystems

The present study investigated the nitrogen removal characteristics and metabolic pathway of bacteria in aquatic ecosystem, with a focus on heterotrophic nitrification and aerobic denitrification. The bacteria demonstrated significant heterotrophic nitrification and aerobic denitrification capacity. The highest ammonium-N, nitrate-N, and nitrite-N removal efficiencies were 95.31 ± 0.11%, 98.91 ± 0.05%, and 98.79 ± 0.09%, respectively. The Monod model was used to estimate the maximum rate of substrate utilization (R_mo) and the half-saturation concentration (K_s) for the two substrates, i.e., ammonium and nitrate. The kinetic coefficients were 3.34 mg/L/d (R_mo) and 30.59 mg/L (K_s) for ammonium-N, respectively, and 14.23 mg/L/d (R_mo) and 215.24 mg/L (K_s) for nitrate-N, respectively. The effects of initial nitrogen (ammonium-N or nitrate-N) concentration, temperature, and dissolved oxygen (DO) on nitrogen removal rate were investigated using response surface methodology (RSM), and the optimal conditions for nitrogen removal were determined. The principal nitrogen removal pathway of the bacteria was proposed as complete heterotrophic nitrification and aerobic denitrification, which was performed by six key genera: Arthrobacter, Pseudomonas, Rhodococcus, Bacillus, Massilia, and Rhizobium. Chryseobacterium and other denitrifying species may also reduce nitrification products (NO_X^-) via aerobic denitrification.

NH4+-N/NO3--N ratio controlling nitrogen transformation accompanied with NO2--N accumulation in the oxic-anoxic transition zone

Although nitrogen (N) transformations have been widely studied under oxic or anoxic condition, few studies have been carried out to analyze the transformation accompanied with NO₂^--N accumulation. Particularly, the control of mixed N species in N-transformation remains unclear in an oxic-anoxic transition zone (OATZ), a unique and ubiquitous redox environment. To bridge the gap, in this study, OATZ microcosms were simulated by surface water and sediments of a shallow lake. The N-transformation processes and rates at different NH₄⁺-N/NO₃^--N ratios, and NO₂^--N accumulations in these processes were evaluated. N-transformation process exhibited a turning point. Simultaneous nitrification and denitrification occurred in its early stage (first 10 days, dissolved oxygen (DO) ≥ 2 mg/L) and then denitrification dominated (after 10 days, DO < 2 mg/L), which were not greatly affected by the NH₄⁺-N/NO₃^--N ratio, on the contrary, the transformation rates of NH₄⁺-N and NO₃^--N were distinctly affected. The NH₄⁺-N transformation rates were positively correlated with the NH₄⁺-N/NO₃^--N ratio. The highest NO₃^--N transformation rate was observed at an NH₄⁺-N/NO₃^--N ratio of 1:1 with organic carbon/NO₃^--N of 3.09. The NO₂^--N accumulation, which increased with the decrease in NH₄⁺-N/NO₃^--N ratio, was also controlled by organic carbon concentration and type. The peak concentration of NO₂^--N accumulation occurred only when the NO₃^--N transformation rate was particularly low. Thus, NO₂^--N accumulation may be reduced by adjusting the control parameters related to N and organic carbon sources, which enhances the theoretical insights for N-polluted aquatic ecosystem bioremediation.