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Baran B, Ölmez F, Çapa B, Dikilitas M. Defense Pathways of Wheat Plants Inoculated with Zymoseptoria tritici under NaCl Stress Conditions: An Overview. Life (Basel) 2024; 14:648. [PMID: 38792668 PMCID: PMC11122936 DOI: 10.3390/life14050648] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/25/2024] [Revised: 04/27/2024] [Accepted: 05/08/2024] [Indexed: 05/26/2024] Open
Abstract
Due to being sessile, plants develop a broad range of defense pathways when they face abiotic or biotic stress factors. Although plants are subjected to more than one type of stress at a time in nature, the combined effects of either multiple stresses of one kind (abiotic or biotic) or more kinds (abiotic and biotic) have now been realized in agricultural lands due to increases in global warming and environmental pollution, along with population increases. Soil-borne pathogens, or pathogens infecting aerial parts, can have devastating effects on plants when combined with other stressors. Obtaining yields or crops from sensitive or moderately resistant plants could be impossible, and it could be very difficult from resistant plants. The mechanisms of combined stress in many plants have previously been studied and elucidated. Recent studies proposed new defense pathways and mechanisms through signaling cascades. In light of these mechanisms, it is now time to develop appropriate strategies for crop protection under multiple stress conditions. This may involve using disease-resistant or stress-tolerant plant varieties, implementing proper irrigation and drainage practices, and improving soil quality. However, generation of both stress-tolerant and disease-resistant crop plants is of crucial importance. The establishment of a database and understanding of the defense mechanisms under combined stress conditions would be meaningful for the development of resistant and tolerant plants. It is clear that leaf pathogens show great tolerance to salinity stress and result in pathogenicity in crop plants. We noticed that regulation of the stomata through biochemical applications and some effort with the upregulation of the minor gene expressions indirectly involved with the defense mechanisms could be a great way to increase the defense metabolites without interfering with quality parameters. In this review, we selected wheat as a model plant and Zymoseptoria tritici as a model leaf pathogen to evaluate the defense mechanisms under saline conditions through physiological, biochemical, and molecular pathways and suggested various ways to generate tolerant and resistant cereal plants.
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Affiliation(s)
- Behzat Baran
- Plant Protection Research Institute, Sur, Diyarbakır 21110, Türkiye;
| | - Fatih Ölmez
- Department of Plant Protection, Faculty of Agriculture, Sivas University of Science and Technology, Sivas 58010, Türkiye;
| | - Beritan Çapa
- Department of Plant Protection Şanliurfa, Faculty of Agriculture, Harran University, Sanliurfa 63000, Türkiye;
| | - Murat Dikilitas
- Department of Plant Protection Şanliurfa, Faculty of Agriculture, Harran University, Sanliurfa 63000, Türkiye;
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2
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Camenzind T, Aguilar-Trigueros CA, Hempel S, Lehmann A, Bielcik M, Andrade-Linares DR, Bergmann J, Dela Cruz J, Gawronski J, Golubeva P, Haslwimmer H, Lartey L, Leifheit E, Maaß S, Marhan S, Pinek L, Powell JR, Roy J, Veresoglou SD, Wang D, Wulf A, Zheng W, Rillig MC. Towards establishing a fungal economics spectrum in soil saprobic fungi. Nat Commun 2024; 15:3321. [PMID: 38637578 PMCID: PMC11026409 DOI: 10.1038/s41467-024-47705-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/02/2024] [Accepted: 04/10/2024] [Indexed: 04/20/2024] Open
Abstract
Trait-based frameworks are promising tools to understand the functional consequences of community shifts in response to environmental change. The applicability of these tools to soil microbes is limited by a lack of functional trait data and a focus on categorical traits. To address this gap for an important group of soil microorganisms, we identify trade-offs underlying a fungal economics spectrum based on a large trait collection in 28 saprobic fungal isolates, derived from a common grassland soil and grown in culture plates. In this dataset, ecologically relevant trait variation is best captured by a three-dimensional fungal economics space. The primary explanatory axis represents a dense-fast continuum, resembling dominant life-history trade-offs in other taxa. A second significant axis reflects mycelial flexibility, and a third one carbon acquisition traits. All three axes correlate with traits involved in soil carbon cycling. Since stress tolerance and fundamental niche gradients are primarily related to the dense-fast continuum, traits of the 2nd (carbon-use efficiency) and especially the 3rd (decomposition) orthogonal axes are independent of tested environmental stressors. These findings suggest a fungal economics space which can now be tested at broader scales.
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Affiliation(s)
- Tessa Camenzind
- Institute of Biology, Freie Universität Berlin, Altensteinstr. 6, 14195, Berlin, Germany.
- Berlin-Brandenburg Institute of Advanced Biodiversity Research (BBIB), Berlin, Germany.
| | - Carlos A Aguilar-Trigueros
- Hawkesbury Institute for the Environment, Western Sydney University, Penrith, NSW, 2751, Australia
- Department of Biological and Environmental Science, University of Jyväskylä, P.O. Box 35, 40014, Jyväskylä, Finland
| | - Stefan Hempel
- Institute of Biology, Freie Universität Berlin, Altensteinstr. 6, 14195, Berlin, Germany
- Berlin-Brandenburg Institute of Advanced Biodiversity Research (BBIB), Berlin, Germany
| | - Anika Lehmann
- Institute of Biology, Freie Universität Berlin, Altensteinstr. 6, 14195, Berlin, Germany
- Berlin-Brandenburg Institute of Advanced Biodiversity Research (BBIB), Berlin, Germany
| | - Milos Bielcik
- Institute of Biology, Freie Universität Berlin, Altensteinstr. 6, 14195, Berlin, Germany
- Berlin-Brandenburg Institute of Advanced Biodiversity Research (BBIB), Berlin, Germany
| | - Diana R Andrade-Linares
- Research Unit Comparative Microbiome Analysis, Helmholtz Zentrum München, Ingolstaedter Landstraße 1, 85764, Neuherberg, Germany
| | - Joana Bergmann
- Leibniz Centre for Agricultural Landscape Research (ZALF), 15374, Müncheberg, Germany
| | - Jeane Dela Cruz
- Institute of Biology, Freie Universität Berlin, Altensteinstr. 6, 14195, Berlin, Germany
- Berlin-Brandenburg Institute of Advanced Biodiversity Research (BBIB), Berlin, Germany
| | - Jessie Gawronski
- Institute of Biology, Freie Universität Berlin, Altensteinstr. 6, 14195, Berlin, Germany
- Berlin-Brandenburg Institute of Advanced Biodiversity Research (BBIB), Berlin, Germany
| | - Polina Golubeva
- Institute of Biology, Freie Universität Berlin, Altensteinstr. 6, 14195, Berlin, Germany
- Berlin-Brandenburg Institute of Advanced Biodiversity Research (BBIB), Berlin, Germany
| | - Heike Haslwimmer
- Institute of Soil Science and Land Evaluation, Soil Biology department, University of Hohenheim, Emil-Wolff-Str. 27, 70599, Stuttgart, Germany
| | - Linda Lartey
- Institute of Biology, Freie Universität Berlin, Altensteinstr. 6, 14195, Berlin, Germany
- Berlin-Brandenburg Institute of Advanced Biodiversity Research (BBIB), Berlin, Germany
| | - Eva Leifheit
- Institute of Biology, Freie Universität Berlin, Altensteinstr. 6, 14195, Berlin, Germany
- Berlin-Brandenburg Institute of Advanced Biodiversity Research (BBIB), Berlin, Germany
| | - Stefanie Maaß
- Institute of Biology, Freie Universität Berlin, Altensteinstr. 6, 14195, Berlin, Germany
- Berlin-Brandenburg Institute of Advanced Biodiversity Research (BBIB), Berlin, Germany
| | - Sven Marhan
- Institute of Soil Science and Land Evaluation, Soil Biology department, University of Hohenheim, Emil-Wolff-Str. 27, 70599, Stuttgart, Germany
| | - Liliana Pinek
- Institute of Biology, Freie Universität Berlin, Altensteinstr. 6, 14195, Berlin, Germany
- Berlin-Brandenburg Institute of Advanced Biodiversity Research (BBIB), Berlin, Germany
| | - Jeff R Powell
- Hawkesbury Institute for the Environment, Western Sydney University, Penrith, NSW, 2751, Australia
| | - Julien Roy
- Institute of Biology, Freie Universität Berlin, Altensteinstr. 6, 14195, Berlin, Germany
- Berlin-Brandenburg Institute of Advanced Biodiversity Research (BBIB), Berlin, Germany
| | - Stavros D Veresoglou
- State Key Laboratory of Biocontrol, School of Ecology, Sun Yat-sen University, Shenzhen, 518107, China
| | - Dongwei Wang
- Institute of Biology, Freie Universität Berlin, Altensteinstr. 6, 14195, Berlin, Germany
- Berlin-Brandenburg Institute of Advanced Biodiversity Research (BBIB), Berlin, Germany
| | - Anja Wulf
- Institute of Biology, Freie Universität Berlin, Altensteinstr. 6, 14195, Berlin, Germany
- Berlin-Brandenburg Institute of Advanced Biodiversity Research (BBIB), Berlin, Germany
| | - Weishuang Zheng
- Marine Institute for Bioresources and Environment, Peking University Shenzhen Institute, Shenzhen, 518057, China
| | - Matthias C Rillig
- Institute of Biology, Freie Universität Berlin, Altensteinstr. 6, 14195, Berlin, Germany
- Berlin-Brandenburg Institute of Advanced Biodiversity Research (BBIB), Berlin, Germany
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3
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Leifheit EF, Camenzind T, Lehmann A, Andrade-Linares DR, Fussan M, Westhusen S, Wineberger TM, Rillig MC. Fungal traits help to understand the decomposition of simple and complex plant litter. FEMS Microbiol Ecol 2024; 100:fiae033. [PMID: 38486354 PMCID: PMC11022653 DOI: 10.1093/femsec/fiae033] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/12/2022] [Revised: 02/21/2024] [Accepted: 03/13/2024] [Indexed: 04/18/2024] Open
Abstract
Litter decomposition is a key ecosystem process, relevant for the release and storage of nutrients and carbon in soil. Soil fungi are one of the dominant drivers of organic matter decomposition, but fungal taxa differ substantially in their functional ability to decompose plant litter. Knowledge is mostly based on observational data and subsequent molecular analyses and in vitro studies have been limited to forest ecosystems. In order to better understand functional traits of saprotrophic soil fungi in grassland ecosystems, we isolated 31 fungi from a natural grassland and performed several in vitro studies testing for i) leaf and wood litter decomposition, ii) the ability to use carbon sources of differing complexity, iii) the enzyme repertoire. Decomposition strongly varied among phyla and isolates, with Ascomycota decomposing the most and Mucoromycota decomposing the least. The phylogeny of the fungi and their ability to use complex carbon were the most important predictors for decomposition. Our findings show that it is crucial to understand the role of individual members and functional groups within the microbial community. This is an important way forward to understand the role of microbial community composition for the prediction of litter decomposition and subsequent potential carbon storage in grassland soils.
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Affiliation(s)
- Eva F Leifheit
- Institute of Biology, Freie Universität Berlin, Altensteinstr. 6, 14195 Berlin, Germany
- Berlin-Brandenburg Institute of Advanced Biodiversity Research (BBIB), Berlin 14195, Germany
| | - Tessa Camenzind
- Institute of Biology, Freie Universität Berlin, Altensteinstr. 6, 14195 Berlin, Germany
- Berlin-Brandenburg Institute of Advanced Biodiversity Research (BBIB), Berlin 14195, Germany
| | - Anika Lehmann
- Institute of Biology, Freie Universität Berlin, Altensteinstr. 6, 14195 Berlin, Germany
- Berlin-Brandenburg Institute of Advanced Biodiversity Research (BBIB), Berlin 14195, Germany
| | - Diana R Andrade-Linares
- Helmholtz Zentrum München, Deutsches Forschungszentrum für Gesundheit und Umwelt (GmbH), Research Unit for Comparative Microbiome Analyses – COMI, 85764 Neuherberg, Germany
| | - Max Fussan
- Institute of Biology, Freie Universität Berlin, Altensteinstr. 6, 14195 Berlin, Germany
- Berlin-Brandenburg Institute of Advanced Biodiversity Research (BBIB), Berlin 14195, Germany
| | - Sophia Westhusen
- Institute of Biology, Freie Universität Berlin, Altensteinstr. 6, 14195 Berlin, Germany
| | - Till M Wineberger
- Institute of Biology, Freie Universität Berlin, Altensteinstr. 6, 14195 Berlin, Germany
| | - Matthias C Rillig
- Institute of Biology, Freie Universität Berlin, Altensteinstr. 6, 14195 Berlin, Germany
- Berlin-Brandenburg Institute of Advanced Biodiversity Research (BBIB), Berlin 14195, Germany
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4
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Mishcherikova V, Lynikienė J, Marčiulynas A, Gedminas A, Prylutskyi O, Marčiulynienė D, Menkis A. Biogeography of Fungal Communities Associated with Pinus sylvestris L. and Picea abies (L.) H. Karst. along the Latitudinal Gradient in Europe. J Fungi (Basel) 2023; 9:829. [PMID: 37623600 PMCID: PMC10455207 DOI: 10.3390/jof9080829] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/05/2023] [Revised: 07/31/2023] [Accepted: 08/04/2023] [Indexed: 08/26/2023] Open
Abstract
We assessed the diversity and composition of fungal communities in different functional tissues and the rhizosphere soil of Pinus sylvestris and Picea abies stands along the latitudinal gradient of these tree species distributions in Europe to model possible changes in fungal communities imposed by climate change. For each tree species, living needles, shoots, roots, and the rhizosphere soil were sampled and subjected to high-throughput sequencing. Results showed that the latitude and the host tree species had a limited effect on the diversity and composition of fungal communities, which were largely explained by the environmental variables of each site and the substrate they colonize. The mean annual temperature and mean annual precipitation had a strong effect on root fungal communities, isothermality on needle fungal communities, mean temperature of the warmest quarter and precipitation of the driest month on shoot fungal communities, and precipitation seasonality on soil fungal communities. Fungal communities of both tree species are predicted to shift to habitats with a lower annual temperature amplitude and with increasing precipitation during the driest month, but the suitability of these habitats as compared to the present conditions is predicted to decrease in the future.
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Affiliation(s)
- Valeriia Mishcherikova
- Institute of Forestry, Lithuanian Research Centre for Agriculture and Forestry, Liepų Str. 1, Girionys, 53101 Kaunas, Lithuania; (V.M.); (J.L.); (A.M.); (A.G.)
| | - Jūratė Lynikienė
- Institute of Forestry, Lithuanian Research Centre for Agriculture and Forestry, Liepų Str. 1, Girionys, 53101 Kaunas, Lithuania; (V.M.); (J.L.); (A.M.); (A.G.)
| | - Adas Marčiulynas
- Institute of Forestry, Lithuanian Research Centre for Agriculture and Forestry, Liepų Str. 1, Girionys, 53101 Kaunas, Lithuania; (V.M.); (J.L.); (A.M.); (A.G.)
| | - Artūras Gedminas
- Institute of Forestry, Lithuanian Research Centre for Agriculture and Forestry, Liepų Str. 1, Girionys, 53101 Kaunas, Lithuania; (V.M.); (J.L.); (A.M.); (A.G.)
| | - Oleh Prylutskyi
- Department of Mycology and Plant Resistance, V.N. Karazin Kharkiv National University, Svobody Sq., 61022 Kharkiv, Ukraine;
| | - Diana Marčiulynienė
- Institute of Forestry, Lithuanian Research Centre for Agriculture and Forestry, Liepų Str. 1, Girionys, 53101 Kaunas, Lithuania; (V.M.); (J.L.); (A.M.); (A.G.)
| | - Audrius Menkis
- Department of Forest Mycology and Plant Pathology, Uppsala BioCenter, Swedish University of Agricultural Sciences, 75007 Uppsala, Sweden;
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5
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Seib T, Fischer K, Sturm AM, Stephan D. Investigation on the Influence of Production and Incubation Temperature on the Growth, Virulence, Germination, and Conidial Size of Metarhizium brunneum for Granule Development. J Fungi (Basel) 2023; 9:668. [PMID: 37367604 DOI: 10.3390/jof9060668] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/24/2023] [Revised: 06/05/2023] [Accepted: 06/08/2023] [Indexed: 06/28/2023] Open
Abstract
Important for the infection of an insect with an entomopathogenic fungus and its use as a plant protection agent are its growth, conidiation, germination, and virulence, which all depend on the environmental temperature. We investigated not only the effect of environmental temperature but also that of production temperature of the fungus. For this purpose, Metarhizium brunneum JKI-BI-1450 was produced and incubated at different temperatures, and the factors mentioned as well as conidial size were determined. The temperature at which the fungus was produced affects its subsequent growth and conidiation on granule formulation, the speed of germination, and the conidial width, but not its final germination or virulence. The growth and conidiation was at its highest when the fungus was produced at 25 °C, whereas when the germination was faster, the warmer the fungus was produced. The incubation temperature optimum of JKI-BI-1450 in relation to growth, speed of germination, and survival time was 25-30 °C and for conidiation 20-25 °C. Conidial length decreased with increasing incubation temperature. Although the fungus could not be adapted to unfavorable conditions by the production temperature, it was found that the quality of a biological control agent based on entomopathogenic fungi can be positively influenced by its production temperature.
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Affiliation(s)
- Tanja Seib
- Julius Kühn-Institute, Federal Research Centre for Cultivated Plants, Institute for Biological Control, Schwabenheimerstraße 101, 69221 Dossenheim, Germany
| | - Katharina Fischer
- Julius Kühn-Institute, Federal Research Centre for Cultivated Plants, Institute for Biological Control, Schwabenheimerstraße 101, 69221 Dossenheim, Germany
| | - Anna Maria Sturm
- Technical University Darmstadt, Department Biologie, Schnittspahnstraße 4, 64287 Darmstadt, Germany
| | - Dietrich Stephan
- Julius Kühn-Institute, Federal Research Centre for Cultivated Plants, Institute for Biological Control, Schwabenheimerstraße 101, 69221 Dossenheim, Germany
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6
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Cordero RJB, Mattoon ER, Ramos Z, Casadevall A. The hypothermic nature of fungi. Proc Natl Acad Sci U S A 2023; 120:e2221996120. [PMID: 37130151 PMCID: PMC10175714 DOI: 10.1073/pnas.2221996120] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/30/2022] [Accepted: 04/04/2023] [Indexed: 05/03/2023] Open
Abstract
Fungi play essential roles in global health, ecology, and economy, but their thermal biology is relatively unexplored. Mushrooms, the fruiting body of mycelium, were previously noticed to be colder than surrounding air through evaporative cooling. Here, we confirm those observations using infrared thermography and report that this hypothermic state is also observed in mold and yeast colonies. The relatively colder temperature of yeasts and molds is also mediated via evaporative cooling and associated with the accumulation of condensed water droplets on plate lids above colonies. The colonies appear coldest at their center and the surrounding agar appears warmest near the colony edges. The analysis of cultivated Pleurotus ostreatus mushrooms revealed that the hypothermic feature of mushrooms can be observed throughout the whole fruiting process and at the level of mycelium. The mushroom's hymenium was coldest, and different areas of the mushroom appear to dissipate heat differently. We also constructed a mushroom-based air-cooling prototype system capable of passively reducing the temperature of a semiclosed compartment by approximately 10 °C in 25 min. These findings suggest that the fungal kingdom is characteristically cold. Since fungi make up approximately 2% of Earth's biomass, their evapotranspiration may contribute to cooler temperatures in local environments.
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Affiliation(s)
- Radames J. B. Cordero
- Department of Molecular Microbiology and Immunology, Johns Hopkins Bloomberg School of Public Health, Johns Hopkins University, Baltimore, MD21205
| | - Ellie Rose Mattoon
- Department of Biology, Krieger School of Arts and Sciences, Johns Hopkins University, Baltimore, MD21218
| | - Zulymar Ramos
- Department of Biology, University of Puerto Rico, Arecibo, PR00612
| | - Arturo Casadevall
- Department of Molecular Microbiology and Immunology, Johns Hopkins Bloomberg School of Public Health, Johns Hopkins University, Baltimore, MD21205
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7
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Lammel DR, Szymczak A, Bielcik M, Rillig MC. Fungal growth response to recurring heating events is modulated by species interactions. Front Ecol Evol 2023. [DOI: 10.3389/fevo.2022.1028136] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/11/2023] Open
Abstract
An increasing frequency of heat events can affect key organisms related to ecosystem functions. Soil saprobic fungi have important roles in carbon and nutrient cycling in soils, and they are clearly affected by heat events. When tested individually, saprobic soil fungi showed a variety of growth responses to a series of two heat events. However, in nature, these fungi rarely grow alone. Coexistence theory predicts that diversity in the response to stressors can influence the outcome of species interactions and growth. This means that the co-cultivation of different fungi may affect their growth response to heat events. To test if recurring heat events affect fungal growth in small synthetic communities, we evaluated fungi previously known to respond to recurring heat events in experimental small communities composed of two and three species. For the fungi growing in pairs, surprisingly, most of the responses could not be predicted by how the isolates responded individually. In some cases, facilitation or increased competition was observed. For the three fungi growing together, results were also not predicted by the individual or pair responses. Both the heat events and the small communities influenced the growth of the fungi and growth properties emerged from the interactions among isolates and the heat stress. We show that not only do environmental conditions influence fungal interactions and growth rates but also that the co-cultivation of different fungi affects the fungal response to recurring heat events. These results indicate that more complex experimental designs are needed to better understand the effects of recurring heat events and climate change on soil fungi.
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8
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Triazole Priming as an Adaptive Response and Gateway to Resistance in Aspergillus fumigatus. Antimicrob Agents Chemother 2022; 66:e0045822. [PMID: 35856665 PMCID: PMC9380525 DOI: 10.1128/aac.00458-22] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/22/2023] Open
Abstract
Invasive aspergillosis (IA), caused predominantly by Aspergillus fumigatus, is the most common opportunistic mold infection in immunocompromised patients. Resistance of A. fumigatus to triazoles has been increasingly reported, leading to poor outcomes of IA to the front-line azoles. Triazole resistance is in part driven by exposure to agricultural azoles through mechanisms that are poorly understood beyond mutations in ergosterol biosynthetic genes. Priming is defined as a process in which prior exposures to sublethal stressful stimuli, such as antimicrobial drugs, can enhance the ability of pathogens to withstand reexposure to the same or other stressors. Here, we describe, for the first time, triazole priming, where exposure of conidia of three A. fumigatus strains to subinhibitory concentrations of either agricultural (tebuconazole difenoconazole, epoxiconazole) or medical triazoles (voriconazole) increases germination and growth during subsequent reexposure to subinhibitory triazole challenge. We demonstrate that priming in A. fumigatus is class specific to triazoles, is not confined to a particular isolate, and is retained for extended periods in primed dormant conidia, but is not transferred to subsequent generations. Furthermore, azole priming at subinhibitory triazole concentrations increased the frequency of development of stable resistance development at inhibitory triazole exposures. Triazole priming could have far-reaching clinical implications in generating resistance due to the widespread use of agricultural triazoles or breakthrough IA in patients with subtherapeutic serum levels of azoles.
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9
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Harish E, Osherov N. Fungal Priming: Prepare or Perish. J Fungi (Basel) 2022; 8:jof8050448. [PMID: 35628704 PMCID: PMC9145559 DOI: 10.3390/jof8050448] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/04/2022] [Revised: 04/21/2022] [Accepted: 04/21/2022] [Indexed: 01/06/2023] Open
Abstract
Priming (also referred to as acclimation, acquired stress resistance, adaptive response, or cross-protection) is defined as an exposure of an organism to mild stress that leads to the development of a subsequent stronger and more protective response. This memory of a previously encountered stress likely provides a strong survival advantage in a rapidly shifting environment. Priming has been identified in animals, plants, fungi, and bacteria. Examples include innate immune priming and transgenerational epigenetic inheritance in animals and biotic and abiotic stress priming in plants, fungi, and bacteria. Priming mechanisms are diverse and include alterations in the levels of specific mRNAs, proteins, metabolites, and epigenetic changes such as DNA methylation and histone acetylation of target genes.
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10
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Camenzind T, Weimershaus P, Lehmann A, Aguilar-Trigueros C, Rillig MC. Soil fungi invest into asexual sporulation under resource scarcity, but trait spaces of individual isolates are unique. Environ Microbiol 2022; 24:2962-2978. [PMID: 35437880 DOI: 10.1111/1462-2920.16012] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/21/2021] [Revised: 03/21/2022] [Accepted: 04/09/2022] [Indexed: 11/29/2022]
Abstract
During the last few decades, a plethora of sequencing studies provided insight into fungal community composition under various environmental conditions. Still, the mechanisms of species assembly and fungal spread in soil remains largely unknown. While mycelial growth patterns are studied extensively, the abundant formation of asexual spores is often overlooked, though representing a substantial part of the fungal life cycle relevant for survival and dispersal. Here we explore asexual sporulation (spore abundance, size and shape) in 32 co-occurring soil fungal isolates under varying resource conditions, to answer the question whether resource limitation triggers or inhibits fungal investment into reproduction. We further hypothesized that trade-offs exist in fungal investment towards growth, spore production and size. The results revealed overall increased fungal investment into spore production under resource limitations; however, effect sizes and response types varied strongly among fungal isolates. Such isolate-specific effects were apparent in all measured traits, resulting in unique trait spaces of individual isolates. This comprehensive dataset also elucidated variability in sporulation strategies and trade-offs with fungal growth and reproduction under resource scarcity, as only predicted by theoretical models before. The observed isolate-specific strategies likely underpin mechanisms of co-existence in this diverse group of saprobic soil fungi. This article is protected by copyright. All rights reserved.
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Affiliation(s)
- Tessa Camenzind
- Institute of Biology, Freie Universität Berlin, Altensteinstr. 6, 14195, Berlin, Germany.,Berlin-Brandenburg Institute of Advanced Biodiversity Research (BBIB), 14195, Berlin, Germany
| | - Paul Weimershaus
- Institute of Biology, Freie Universität Berlin, Altensteinstr. 6, 14195, Berlin, Germany.,Berlin-Brandenburg Institute of Advanced Biodiversity Research (BBIB), 14195, Berlin, Germany
| | - Anika Lehmann
- Institute of Biology, Freie Universität Berlin, Altensteinstr. 6, 14195, Berlin, Germany.,Berlin-Brandenburg Institute of Advanced Biodiversity Research (BBIB), 14195, Berlin, Germany
| | - Carlos Aguilar-Trigueros
- Institute of Biology, Freie Universität Berlin, Altensteinstr. 6, 14195, Berlin, Germany.,Berlin-Brandenburg Institute of Advanced Biodiversity Research (BBIB), 14195, Berlin, Germany
| | - Matthias C Rillig
- Institute of Biology, Freie Universität Berlin, Altensteinstr. 6, 14195, Berlin, Germany.,Berlin-Brandenburg Institute of Advanced Biodiversity Research (BBIB), 14195, Berlin, Germany
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11
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Aguilar-Trigueros CA, Boddy L, Rillig MC, Fricker MD. Network traits predict ecological strategies in fungi. ISME COMMUNICATIONS 2022; 2:2. [PMID: 37938271 PMCID: PMC9723744 DOI: 10.1038/s43705-021-00085-1] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/21/2021] [Revised: 12/12/2021] [Accepted: 12/16/2021] [Indexed: 05/11/2023]
Abstract
Colonization of terrestrial environments by filamentous fungi relies on their ability to form networks that can forage for and connect resource patches. Despite the importance of these networks, ecologists rarely consider network features as functional traits because their measurement and interpretation are conceptually and methodologically difficult. To address these challenges, we have developed a pipeline to translate images of fungal mycelia, from both micro- and macro-scales, to weighted network graphs that capture ecologically relevant fungal behaviour. We focus on four properties that we hypothesize determine how fungi forage for resources, specifically: connectivity; relative construction cost; transport efficiency; and robustness against attack by fungivores. Constrained ordination and Pareto front analysis of these traits revealed that foraging strategies can be distinguished predominantly along a gradient of connectivity for micro- and macro-scale mycelial networks that is reminiscent of the qualitative 'phalanx' and 'guerilla' descriptors previously proposed in the literature. At one extreme are species with many inter-connections that increase the paths for multidirectional transport and robustness to damage, but with a high construction cost; at the other extreme are species with an opposite phenotype. Thus, we propose this approach represents a significant advance in quantifying ecological strategies for fungi using network information.
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Affiliation(s)
- C A Aguilar-Trigueros
- Freie Universität Berlin, Institut für Biologie, Altensteinstraße 6, 14195, Berlin, Germany.
- Berlin-Brandenburg Institute of Advanced Biodiversity Research (BBIB), 14195, Berlin, Germany.
- Department of Biological and Environmental Science, University of Jyväskylä, P.O. Box 35, FI-40014, Jyväskylä, Finland.
| | - L Boddy
- School of Biosciences, Sir Martin Evans Building, Cardiff University, CF10 3AX, Cardiff, UK
| | - M C Rillig
- Freie Universität Berlin, Institut für Biologie, Altensteinstraße 6, 14195, Berlin, Germany
- Berlin-Brandenburg Institute of Advanced Biodiversity Research (BBIB), 14195, Berlin, Germany
| | - M D Fricker
- Department of Plant Sciences, University of Oxford, South Parks Road, OX1 3RB, Oxford, UK
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12
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Zhang P, Luan M, Li X, Lian Z, Zhao X. The distribution of soil fungal communities along an altitudinal gradient in an alpine meadow. Glob Ecol Conserv 2021. [DOI: 10.1016/j.gecco.2021.e01838] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022] Open
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13
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Fukasawa Y, Kaga K. Timing of Resource Addition Affects the Migration Behavior of Wood Decomposer Fungal Mycelia. J Fungi (Basel) 2021; 7:654. [PMID: 34436193 PMCID: PMC8402142 DOI: 10.3390/jof7080654] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/14/2021] [Revised: 08/10/2021] [Accepted: 08/11/2021] [Indexed: 11/26/2022] Open
Abstract
Studies of fungal behavior are essential for a better understanding of fungal-driven ecological processes. Here, we evaluated the effects of timing of resource (bait) addition on the behavior of fungal mycelia when it remains in the inoculum and when it migrates from it towards a bait, using cord-forming basidiomycetes. Experiments allowed mycelium to grow from an inoculum wood across the surface of a soil microcosm, where it encountered a new wood bait 14 or 98 d after the start of growth. After the 42-d colonization of the bait, inoculum and bait were individually moved to a dish containing fresh soil to determine whether the mycelia were able to grow out. When the inoculum and bait of mycelia baited after 14 d were transferred to new soil, there was 100% regrowth from both inoculum and bait in Pholiota brunnescens and Phanerochaete velutina, indicating that no migration occurred. However, when mycelium was baited after 98 d, 3 and 4 out of 10 replicates of P. brunnescens and P. velutina, respectively, regrew only from bait and not from inoculum, indicating migration. These results suggest that prolonged periods without new resources alter the behavior of mycelium, probably due to the exhaustion of resources.
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Affiliation(s)
- Yu Fukasawa
- Kawatabi Field Science Center, Graduate School of Agricultural Science, Tohoku University, Miyagi 989-6711, Japan;
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14
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Liu Y, Gong X, Li M, Si H, Zhou Q, Liu X, Fan Y, Zhang X, Han J, Gu S, Dong J. Effect of Osmotic Stress on the Growth, Development and Pathogenicity of Setosphaeria turcica. Front Microbiol 2021; 12:706349. [PMID: 34367108 PMCID: PMC8342955 DOI: 10.3389/fmicb.2021.706349] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/07/2021] [Accepted: 06/29/2021] [Indexed: 11/22/2022] Open
Abstract
Osmotic stress is a severe condition frequently encountered by microorganisms; however, there is limited knowledge on the influence of hyperosmotic stress on the growth, development and pathogenicity of phytopathogenic fungi. Here, three osmotic conditions (0.4 M NaCl, 0.4 M KCl, and 0.6 M sorbitol supplemented in potato dextrose agar medium) were used to identify the effect of osmotic stress on the growth, development and pathogenicity of Setosphaeria turcica which is a plant pathogenic fungus and causes northern corn leaf blight disease in maize, sorghum, and related grasses. In osmotic stress, the growth rate of mycelium was decreased, and the number of vesicular structures and flocculent secretion outside the hypha cell wall were significantly increased. The qRT-PCR results showed that the osmotic stress quickly activated the HOG-MAPK pathway, up-regulated the expression of the downstream genes, and these genes were most highly expressed within 30 min of exposure to osmotic stress. Furthermore, the germination rate and the yield of conidia were significantly higher under osmotic stress than in the control. A pathogenicity analysis confirmed that pathogenicity of the conidia which were cultured under osmotic stress was significantly enhanced. By analyzing the knock-out mutants of an osmotic stress responsed gene StFPS1, an aquaglyceroporin downstream of the HOG-MAPK pathway, we found that StFPS1 was involved in the formation of appressorium and penetration peg, which affected the penetration ability of S. turcica. In summary, our work explained the correlation between osmotic stress and growth, development, and pathogenicity in S. turcica.
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Affiliation(s)
- Yuwei Liu
- State Key Laboratory of North China Crop Improvement and Regulation, Baoding, China.,College of Life Sciences, Hebei Agricultural University, Baoding, China.,Key Laboratory of Hebei Province for Plant Physiology and Molecular Pathology, Baoding, China
| | - Xiaodong Gong
- State Key Laboratory of North China Crop Improvement and Regulation, Baoding, China.,College of Life Sciences, Hebei Agricultural University, Baoding, China.,Key Laboratory of Hebei Province for Plant Physiology and Molecular Pathology, Baoding, China
| | - Moxiao Li
- State Key Laboratory of North China Crop Improvement and Regulation, Baoding, China.,College of Life Sciences, Hebei Agricultural University, Baoding, China.,Key Laboratory of Hebei Province for Plant Physiology and Molecular Pathology, Baoding, China
| | - Helong Si
- State Key Laboratory of North China Crop Improvement and Regulation, Baoding, China.,College of Life Sciences, Hebei Agricultural University, Baoding, China.,Key Laboratory of Hebei Province for Plant Physiology and Molecular Pathology, Baoding, China
| | - Qihui Zhou
- State Key Laboratory of North China Crop Improvement and Regulation, Baoding, China.,College of Life Sciences, Hebei Agricultural University, Baoding, China.,Key Laboratory of Hebei Province for Plant Physiology and Molecular Pathology, Baoding, China
| | - Xingchen Liu
- State Key Laboratory of North China Crop Improvement and Regulation, Baoding, China.,College of Life Sciences, Hebei Agricultural University, Baoding, China.,Key Laboratory of Hebei Province for Plant Physiology and Molecular Pathology, Baoding, China
| | - Yu Fan
- State Key Laboratory of North China Crop Improvement and Regulation, Baoding, China.,College of Life Sciences, Hebei Agricultural University, Baoding, China.,Key Laboratory of Hebei Province for Plant Physiology and Molecular Pathology, Baoding, China
| | - Xiaoyu Zhang
- State Key Laboratory of North China Crop Improvement and Regulation, Baoding, China.,College of Life Sciences, Hebei Agricultural University, Baoding, China.,Key Laboratory of Hebei Province for Plant Physiology and Molecular Pathology, Baoding, China
| | - Jianmin Han
- State Key Laboratory of North China Crop Improvement and Regulation, Baoding, China.,College of Life Sciences, Hebei Agricultural University, Baoding, China.,Key Laboratory of Hebei Province for Plant Physiology and Molecular Pathology, Baoding, China
| | - Shouqin Gu
- State Key Laboratory of North China Crop Improvement and Regulation, Baoding, China.,College of Life Sciences, Hebei Agricultural University, Baoding, China.,Key Laboratory of Hebei Province for Plant Physiology and Molecular Pathology, Baoding, China
| | - Jingao Dong
- State Key Laboratory of North China Crop Improvement and Regulation, Baoding, China.,College of Life Sciences, Hebei Agricultural University, Baoding, China.,College of Plant Protection, Hebei Agricultural University, Baoding, China
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15
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Mattoon ER, Casadevall A, Cordero RJB. Beat the heat: correlates, compounds, and mechanisms involved in fungal thermotolerance. FUNGAL BIOL REV 2021. [DOI: 10.1016/j.fbr.2021.03.002] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
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16
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Money NP. Hyphal and mycelial consciousness: the concept of the fungal mind. Fungal Biol 2021; 125:257-259. [PMID: 33766303 DOI: 10.1016/j.funbio.2021.02.001] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/03/2021] [Revised: 02/08/2021] [Accepted: 02/11/2021] [Indexed: 12/12/2022]
Abstract
Like other cells, fungal hyphae show exquisite sensitivity to their environment. This reactiveness is demonstrated at many levels, from changes in the form of the hypha resulting from alterations in patterns of exocytosis, to membrane excitation, and mechanisms of wound repair. Growing hyphae detect ridges on surfaces and respond to restrictions in their physical space. These are expressions of cellular consciousness. Fungal mycelia show decision-making and alter their developmental patterns in response to interactions with other organisms. Mycelia may even be capable of spatial recognition and learning coupled with a facility for short-term memory. Now is a fruitful time to recognize the study of fungal ethology as a distinctive discipline within mycology.
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Affiliation(s)
- Nicholas P Money
- Western Program and Department of Biology, Miami University, Oxford, OH, 45056, USA.
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17
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Wesener F, Szymczak A, Rillig MC, Tietjen B. Stress priming affects fungal competition - evidence from a combined experimental and modelling study. Environ Microbiol 2021; 23:5934-5945. [PMID: 33538387 DOI: 10.1111/1462-2920.15418] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/03/2020] [Revised: 01/18/2021] [Accepted: 01/29/2021] [Indexed: 12/01/2022]
Abstract
Priming, an inducible stress defence strategy that prepares an organism for an impending stress event, is common in microbes and has been studied mostly in isolated organisms or populations. How the benefits of priming change in the microbial community context and, vice versa, whether priming influences competition between organisms, remain largely unknown. In this study, we grew different isolates of soil fungi that experienced heat stress in isolation and pairwise competition experiments and assessed colony extension rate as a measure of fitness under priming and non-priming conditions. Based on this data, we developed a cellular automaton model simulating the growth of the ascomycete Chaetomium angustispirale competing against other fungi and systematically varied fungal response traits to explain similarities and differences observed in the experimental data. We showed that competition changes the priming benefit compared with isolated growth and that it can even be reversed depending on the competitor's traits such as growth rate, primeability and stress susceptibility. With this study, we transfer insights on priming from studies in isolation to competition between species. This is an important step towards understanding the role of inducible defences in microbial community assembly and composition.
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Affiliation(s)
- Felix Wesener
- Institute of Biology, Theoretical Ecology, Freie Universität Berlin, Königin-Luise-Str. 2/4, Gartenhaus, Berlin, 14195, Germany
| | - Aleksandra Szymczak
- Institute of Biology, Ecology of Plants, Freie Universität Berlin, Altensteinstraße 6, Berlin, 14195, Germany
| | - Matthias C Rillig
- Institute of Biology, Ecology of Plants, Freie Universität Berlin, Altensteinstraße 6, Berlin, 14195, Germany.,Berlin Brandenburg Institute of Advanced Biodiversity Research (BBIB), Berlin, 14195, Germany
| | - Britta Tietjen
- Institute of Biology, Theoretical Ecology, Freie Universität Berlin, Königin-Luise-Str. 2/4, Gartenhaus, Berlin, 14195, Germany.,Berlin Brandenburg Institute of Advanced Biodiversity Research (BBIB), Berlin, 14195, Germany
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18
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Golubeva P, Ryo M, Muller LAH, Ballhausen MB, Lehmann A, Sosa-Hernández MA, Rillig MC. Soil Saprobic Fungi Differ in Their Response to Gradually and Abruptly Delivered Copper. Front Microbiol 2020; 11:1195. [PMID: 32655517 PMCID: PMC7325975 DOI: 10.3389/fmicb.2020.01195] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/12/2020] [Accepted: 05/12/2020] [Indexed: 11/29/2022] Open
Abstract
The overwhelming majority of studies examining environmental change deliver treatments abruptly, although, in fact, many important changes are gradual. One example of a gradually increasing environmental stressor is heavy metal contamination. Essential heavy metals, such as copper, play an important role within cells of living organisms but are toxic at higher concentrations. In our study, we focus on the effects of copper pollution on filamentous soil fungi, key players in terrestrial ecosystem functioning. We hypothesize that fungi exposed to gradually increasing copper concentrations have higher chances for physiological acclimation and will maintain biomass production and accumulate less copper, compared to fungi abruptly exposed to the highest copper concentration. To test this hypothesis, we conducted an experiment with 17 fungal isolates exposed to gradual and abrupt copper addition. Contrary to our hypothesis, we find diverse idiosyncratic responses, such that for many fungi gradually increasing copper concentrations have more severe effects (stronger growth inhibition and higher copper accumulation) than an abrupt increase. While a number of environmental change studies have accumulated evidence based on the magnitude of changes, the results of our study imply that the rate of change can be an important factor to consider in future studies in ecology, environmental science, and environmental management.
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Affiliation(s)
- Polina Golubeva
- Institut für Biologie, Freie Universität Berlin, Berlin, Germany.,Berlin-Brandenburg Institute of Advanced Biodiversity Research (BBIB), Berlin, Germany
| | - Masahiro Ryo
- Institut für Biologie, Freie Universität Berlin, Berlin, Germany.,Berlin-Brandenburg Institute of Advanced Biodiversity Research (BBIB), Berlin, Germany
| | - Ludo A H Muller
- Institut für Biologie, Freie Universität Berlin, Berlin, Germany.,Berlin-Brandenburg Institute of Advanced Biodiversity Research (BBIB), Berlin, Germany
| | - Max-Bernhard Ballhausen
- Institut für Biologie, Freie Universität Berlin, Berlin, Germany.,Berlin-Brandenburg Institute of Advanced Biodiversity Research (BBIB), Berlin, Germany
| | - Anika Lehmann
- Institut für Biologie, Freie Universität Berlin, Berlin, Germany.,Berlin-Brandenburg Institute of Advanced Biodiversity Research (BBIB), Berlin, Germany
| | - Moisés A Sosa-Hernández
- Institut für Biologie, Freie Universität Berlin, Berlin, Germany.,Berlin-Brandenburg Institute of Advanced Biodiversity Research (BBIB), Berlin, Germany
| | - Matthias C Rillig
- Institut für Biologie, Freie Universität Berlin, Berlin, Germany.,Berlin-Brandenburg Institute of Advanced Biodiversity Research (BBIB), Berlin, Germany
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19
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Camenzind T, Lehmann A, Ahland J, Rumpel S, Rillig MC. Trait‐based approaches reveal fungal adaptations to nutrient‐limiting conditions. Environ Microbiol 2020; 22:3548-3560. [DOI: 10.1111/1462-2920.15132] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/31/2019] [Revised: 05/06/2020] [Accepted: 06/15/2020] [Indexed: 12/14/2022]
Affiliation(s)
- Tessa Camenzind
- Institute of Biology, Freie Universität Berlin Berlin Altensteinstr. 6, 14195 Germany
- Berlin‐Brandenburg Institute of Advanced Biodiversity Research (BBIB) Berlin 14195 Germany
| | - Anika Lehmann
- Institute of Biology, Freie Universität Berlin Berlin Altensteinstr. 6, 14195 Germany
- Berlin‐Brandenburg Institute of Advanced Biodiversity Research (BBIB) Berlin 14195 Germany
| | - Janet Ahland
- Institute of Biology, Freie Universität Berlin Berlin Altensteinstr. 6, 14195 Germany
| | - Stephanie Rumpel
- Institute of Biology, Freie Universität Berlin Berlin Altensteinstr. 6, 14195 Germany
| | - Matthias C. Rillig
- Institute of Biology, Freie Universität Berlin Berlin Altensteinstr. 6, 14195 Germany
- Berlin‐Brandenburg Institute of Advanced Biodiversity Research (BBIB) Berlin 14195 Germany
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20
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Growth rate trades off with enzymatic investment in soil filamentous fungi. Sci Rep 2020; 10:11013. [PMID: 32620925 PMCID: PMC7335036 DOI: 10.1038/s41598-020-68099-8] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/01/2019] [Accepted: 06/19/2020] [Indexed: 11/09/2022] Open
Abstract
Saprobic soil fungi drive many important ecosystem processes, including decomposition, and many of their effects are related to growth rate and enzymatic ability. In mycology, there has long been the implicit assumption of a trade-off between growth and enzymatic investment, which we test here using a set of filamentous fungi from the same soil. For these fungi we measured growth rate (as colony radial extension) and enzymatic repertoire (activities of four enzymes: laccase, cellobiohydrolase, leucine aminopeptidase and acid phosphatase), and explored the interaction between the traits based on phylogenetically corrected methods. Our results support the existence of a trade-off, however only for the enzymes presumably representing a larger metabolic cost (laccase and cellobiohydrolase). Our study offers new insights into potential functional complementarity within the soil fungal community in ecosystem processes, and experimentally supports an enzymatic investment/growth rate trade-off underpinning phenomena including substrate succession.
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21
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Guhr A, Kircher S. Drought-Induced Stress Priming in Two Distinct Filamentous Saprotrophic Fungi. MICROBIAL ECOLOGY 2020; 80:27-33. [PMID: 31950228 PMCID: PMC7338827 DOI: 10.1007/s00248-019-01481-w] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/02/2019] [Accepted: 12/22/2019] [Indexed: 05/04/2023]
Abstract
Sessile organisms constantly face environmental fluctuations and especially drought is a common stressor. One adaptive mechanism is "stress priming," the ability to cope with a severe stress ("triggering") by retaining information from a previous mild stress event ("priming"). While plants have been extensively investigated for drought-induced stress priming, no information is available for saprotrophic filamentous fungi, which are highly important for nutrient cycles. Here, we investigated the potential for drought-induced stress priming of one strain each of two ubiquitous species, Neurospora crassa and Penicillium chrysogenum. A batch experiment with 4 treatments was conducted on a sandy soil: exposure to priming and/or triggering as well as non-stressed controls. A priming stress was caused by desiccation to pF 4. The samples were then rewetted and after 1-, 7-, or 14-days of recovery triggered (pF 6). After triggering, fungal biomass, respiration, and β-glucosidase activity were quantified. P. chrysogenum showed positive stress priming effects. After 1 day of recovery, biomass as well as β-glucosidase activity and respiration were 0.5 to 5 times higher during triggering. Effects on biomass and activity decreased with prolonged recovery but lasted for 7 days and minor effects were still detectable after 14 days. Without triggering, stress priming had a temporary negative impact on biomass but this reversed after 14 days. For N. crassa, no stress priming effect was observed on the tested variables. The potential for drought-induced stress priming seems to be species specific with potentially high impact on composition and activity of fungal communities considering the expected increase of drought events.
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Affiliation(s)
- Alexander Guhr
- Department of Soil Ecology, BayCEER, University of Bayreuth, Dr.-Hans-Frisch-Straße 1-3, 95448, Bayreuth, Germany.
| | - Sophia Kircher
- Department of Soil Ecology, BayCEER, University of Bayreuth, Dr.-Hans-Frisch-Straße 1-3, 95448, Bayreuth, Germany
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22
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Szymczak A, Ryo M, Roy J, Rillig MC. Diversity of Growth Responses of Soil Saprobic Fungi to Recurring Heat Events. Front Microbiol 2020; 11:1326. [PMID: 32636822 PMCID: PMC7316893 DOI: 10.3389/fmicb.2020.01326] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/19/2019] [Accepted: 05/25/2020] [Indexed: 01/04/2023] Open
Abstract
As a consequence of ongoing climate change, the frequency of extreme heat events is expected to increase. Recurring heat pulses may disrupt functions supported by soil microorganisms, thus affecting the entire ecosystem. However, most perturbation experiments only test effects of single heat events, and therefore it remains largely unknown how soil microorganisms react to repeated pulse events. Here we present data from a lab experiment exposing 32 filamentous fungi, originally isolated from the same soil, to sequential heat perturbations. Soil saprobic fungi isolates were exposed to one or two heat pulses: mild (35°C/2 h), strong (45°C/1 h), or both in sequence (35°C/2 h+45°C/1 h), and we assessed growth rate. Out of the 32 isolates 13 isolates showed an antagonistic response, 3 isolates a synergistic response and 16 isolates responded in an additive manner. Thus the 32 filamentous fungal isolates used here showed the full range of possible responses to an identical heat perturbation sequence. This diversity of responses could have consequences for soil-borne ecosystem services, highlighting the potential importance of fungal biodiversity in maintaining such services, particularly in the context of climate change.
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Affiliation(s)
- Aleksandra Szymczak
- Institute of Biology, Freie Universität Berlin, Berlin, Germany
- Berlin-Brandenburg Institute of Advanced Biodiversity Research, Berlin, Germany
| | - Masahiro Ryo
- Institute of Biology, Freie Universität Berlin, Berlin, Germany
- Berlin-Brandenburg Institute of Advanced Biodiversity Research, Berlin, Germany
| | - Julien Roy
- Institute of Biology, Freie Universität Berlin, Berlin, Germany
- Berlin-Brandenburg Institute of Advanced Biodiversity Research, Berlin, Germany
| | - Matthias C. Rillig
- Institute of Biology, Freie Universität Berlin, Berlin, Germany
- Berlin-Brandenburg Institute of Advanced Biodiversity Research, Berlin, Germany
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23
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Wesener F, Tietjen B. Primed to be strong, primed to be fast: modeling benefits of microbial stress responses. FEMS Microbiol Ecol 2020; 95:5531307. [PMID: 31295343 PMCID: PMC6657816 DOI: 10.1093/femsec/fiz114] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/01/2019] [Accepted: 07/09/2019] [Indexed: 11/17/2022] Open
Abstract
Organisms are prone to different stressors and have evolved various defense mechanisms. One such defense mechanism is priming, where a mild preceding stress prepares the organism toward an improved stress response. This improved response can strongly vary, and primed organisms have been found to respond with one of three response strategies: a shorter delay to stress, a faster buildup of their response or a more intense response. However, a universal comparative assessment, which response is superior under a given environmental setting, is missing. We investigate the benefits of the three improved responses for microorganisms with an ordinary differential equation model, simulating the impact of an external stress on a microbial population that is either naïve or primed. We systematically assess the resulting population performance for different costs associated with priming and stress conditions. Our results show that independent of stress type and priming costs, the stronger primed response is most beneficial for longer stress phases, while the faster and earlier responses increase population performance and survival probability under short stresses. Competition increases priming benefits and promotes the early stress response. This dependence on the ecological context highlights the importance of including primed response strategies into microbial stress ecology.
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Affiliation(s)
- Felix Wesener
- Biodiversity/Theoretical Ecology Group, Institute of Biology, Freie Universität Berlin, Altensteinstraße 34, 14195 Berlin, Germany
| | - Britta Tietjen
- Biodiversity/Theoretical Ecology Group, Institute of Biology, Freie Universität Berlin, Altensteinstraße 34, 14195 Berlin, Germany.,Berlin Brandenburg Institute of Advanced Biodiversity Research, 14195 Berlin, Germany
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24
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Lehmann A, Zheng W, Ryo M, Soutschek K, Roy J, Rongstock R, Maaß S, Rillig MC. Fungal Traits Important for Soil Aggregation. Front Microbiol 2020; 10:2904. [PMID: 31998249 PMCID: PMC6962133 DOI: 10.3389/fmicb.2019.02904] [Citation(s) in RCA: 19] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/04/2019] [Accepted: 12/02/2019] [Indexed: 01/29/2023] Open
Abstract
Soil structure, the complex arrangement of soil into aggregates and pore spaces, is a key feature of soils and soil biota. Among them, filamentous saprobic fungi have well-documented effects on soil aggregation. However, it is unclear what properties, or traits, determine the overall positive effect of fungi on soil aggregation. To achieve progress, it would be helpful to systematically investigate a broad suite of fungal species for their trait expression and the relation of these traits to soil aggregation. Here, we apply a trait-based approach to a set of 15 traits measured under standardized conditions on 31 fungal strains including Ascomycota, Basidiomycota, and Mucoromycota, all isolated from the same soil. We find large differences among these fungi in their ability to aggregate soil, including neutral to positive effects, and we document large differences in trait expression among strains. We identify biomass density, i.e., the density with which a mycelium grows (positive effects), leucine aminopeptidase activity (negative effects) and phylogeny as important factors explaining differences in soil aggregate formation (SAF) among fungal strains; importantly, growth rate was not among the important traits. Our results point to a typical suite of traits characterizing fungi that are good soil aggregators, and our findings illustrate the power of employing a trait-based approach to unravel biological mechanisms underpinning soil aggregation. Such an approach could now be extended also to other soil biota groups. In an applied context of restoration and agriculture, such trait information can inform management, for example to prioritize practices that favor the expression of more desirable fungal traits.
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Affiliation(s)
- Anika Lehmann
- Ecology of Plants, Institut für Biologie, Freie Universität Berlin, Berlin, Germany
- Berlin-Brandenburg Institute of Advanced Biodiversity Research, Berlin, Germany
| | | | - Masahiro Ryo
- Ecology of Plants, Institut für Biologie, Freie Universität Berlin, Berlin, Germany
- Berlin-Brandenburg Institute of Advanced Biodiversity Research, Berlin, Germany
| | - Katharina Soutschek
- Ecology of Plants, Institut für Biologie, Freie Universität Berlin, Berlin, Germany
| | - Julien Roy
- Ecology of Plants, Institut für Biologie, Freie Universität Berlin, Berlin, Germany
- Berlin-Brandenburg Institute of Advanced Biodiversity Research, Berlin, Germany
| | - Rebecca Rongstock
- Ecology of Plants, Institut für Biologie, Freie Universität Berlin, Berlin, Germany
| | - Stefanie Maaß
- Berlin-Brandenburg Institute of Advanced Biodiversity Research, Berlin, Germany
- Plant Ecology and Nature Conservation, Institut für Biochemie und Biologie, Universität Potsdam, Potsdam, Germany
| | - Matthias C. Rillig
- Ecology of Plants, Institut für Biologie, Freie Universität Berlin, Berlin, Germany
- Berlin-Brandenburg Institute of Advanced Biodiversity Research, Berlin, Germany
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25
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Lehmann A, Zheng W, Soutschek K, Roy J, Yurkov AM, Rillig MC. Tradeoffs in hyphal traits determine mycelium architecture in saprobic fungi. Sci Rep 2019; 9:14152. [PMID: 31578362 PMCID: PMC6775140 DOI: 10.1038/s41598-019-50565-7] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/21/2018] [Accepted: 09/12/2019] [Indexed: 11/09/2022] Open
Abstract
The fungal mycelium represents the essence of the fungal lifestyle, and understanding how a mycelium is constructed is of fundamental importance in fungal biology and ecology. Previous studies have examined initial developmental patterns or focused on a few strains, often mutants of model species, and frequently grown under non-harmonized growth conditions; these factors currently collectively hamper systematic insights into rules of mycelium architecture. To address this, we here use a broader suite of fungi (31 species including members of the Ascomycota, Basidiomycota and Mucoromycota), all isolated from the same soil, and tested for ten architectural traits under standardized laboratory conditions. We find great variability in traits among the saprobic fungal species, and detect several clear tradeoffs in mycelial architecture, for example between internodal length and hyphal diameter. Within the constraints so identified, we document otherwise great versatility in mycelium architecture in this set of fungi, and there was no evidence of trait 'syndromes' as might be expected. Our results point to an important dimension of fungal properties with likely consequences for coexistence within local communities, as well as for functional complementarity (e.g. decomposition, soil aggregation).
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Affiliation(s)
- Anika Lehmann
- Freie Universität Berlin, Institut für Biologie, Plant Ecology, Altensteinstr. 6, D-14195, Berlin, Germany. .,Berlin-Brandenburg Institute of Advanced Biodiversity Research (BBIB), D-14195, Berlin, Germany.
| | - Weishuang Zheng
- PKU-HKUST ShenZhen-Hong Kong Institution, Shenzhen, 518057, China
| | - Katharina Soutschek
- Freie Universität Berlin, Institut für Biologie, Plant Ecology, Altensteinstr. 6, D-14195, Berlin, Germany
| | - Julien Roy
- Freie Universität Berlin, Institut für Biologie, Plant Ecology, Altensteinstr. 6, D-14195, Berlin, Germany.,Berlin-Brandenburg Institute of Advanced Biodiversity Research (BBIB), D-14195, Berlin, Germany
| | - Andrey M Yurkov
- Leibniz Institute DSMZ - German Collection of Microorganisms and Cell Cultures, Inhoffenstraße 7B, D-38124, Braunschweig, Germany
| | - Matthias C Rillig
- Freie Universität Berlin, Institut für Biologie, Plant Ecology, Altensteinstr. 6, D-14195, Berlin, Germany.,Berlin-Brandenburg Institute of Advanced Biodiversity Research (BBIB), D-14195, Berlin, Germany
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26
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Liang Y, Lehmann A, Ballhausen MB, Muller L, Rillig MC. Increasing Temperature and Microplastic Fibers Jointly Influence Soil Aggregation by Saprobic Fungi. Front Microbiol 2019; 10:2018. [PMID: 31555244 PMCID: PMC6742716 DOI: 10.3389/fmicb.2019.02018] [Citation(s) in RCA: 32] [Impact Index Per Article: 6.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/13/2019] [Accepted: 08/19/2019] [Indexed: 01/24/2023] Open
Abstract
Microplastic pollution and increasing temperature have potential to influence soil quality; yet little is known about their effects on soil aggregation, a key determinant of soil quality. Given the importance of fungi for soil aggregation, we investigated the impacts of increasing temperature and microplastic fibers on aggregation by carrying out a soil incubation experiment in which we inoculated soil individually with 5 specific strains of soil saprobic fungi. Our treatments were temperature (ambient temperature of 25°C or temperature increased by 3°C, abruptly versus gradually) and microplastic fibers (control and 0.4% w/w). We evaluated the percentage of water stable aggregates (WSA) and hydrolysis of fluorescein diacetate (FDA) as an indicator of fungal biomass. Microplastic fiber addition was the main factor influencing the WSA, decreasing the percentage of WSA except in soil incubated with strain RLCS 01, and mitigated the effects of temperature or even caused more pronounced decrease in WSA under increasing temperature. We also observed clear differences between temperature change patterns. Our study shows that the interactive effects of warming and microplastic fibers are important to consider when evaluating effects of global change on soil aggregation and potentially other soil processes.
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Affiliation(s)
- Yun Liang
- Institut für Biologie, Freie Universität Berlin, Berlin, Germany
- Berlin-Brandenburg Institute of Advanced Biodiversity Research, Berlin, Germany
| | - Anika Lehmann
- Institut für Biologie, Freie Universität Berlin, Berlin, Germany
- Berlin-Brandenburg Institute of Advanced Biodiversity Research, Berlin, Germany
| | - Max-Bernhard Ballhausen
- Institut für Biologie, Freie Universität Berlin, Berlin, Germany
- Berlin-Brandenburg Institute of Advanced Biodiversity Research, Berlin, Germany
| | - Ludo Muller
- Institut für Biologie, Freie Universität Berlin, Berlin, Germany
- Berlin-Brandenburg Institute of Advanced Biodiversity Research, Berlin, Germany
| | - Matthias C. Rillig
- Institut für Biologie, Freie Universität Berlin, Berlin, Germany
- Berlin-Brandenburg Institute of Advanced Biodiversity Research, Berlin, Germany
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27
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Paik SM, Jin E, Sim SJ, Jeon NL. Vibration-induced stress priming during seed culture increases microalgal biomass in high shear field-cultivation. BIORESOURCE TECHNOLOGY 2018; 254:340-346. [PMID: 29397260 DOI: 10.1016/j.biortech.2018.01.108] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/23/2017] [Revised: 01/15/2018] [Accepted: 01/22/2018] [Indexed: 06/07/2023]
Abstract
Vibrational wave treatment has been used to increase proliferation of microalgae. When directly applied at large scale, however, turbulence can offset positive effects of vibration on microalgae proliferation. Moreover, severe hydrodynamic shear fields in the bioreactor decrease cell viability that detrimentally influence maximum yieldable biomass. In this study, vibration pretreatment (between 10-30 Hz and 0.15-0.45 G) was used to prime the cells for enhanced biomass. When exposed to 10 Hz at 0.15 G for 72 h and inoculated in baffled flasks of large shear fields (0.292 Pa for the average wall shear force (aveWSF) and 184 s-1 for the average shear strain rate (aveSSR)), microalgae showed 27% increase in biomass as well as 39% increase in corresponding amount of heterologous protein (i.e. GFP-3HA). Our results show that stress primed microalgae with vibrations can lead to improved proliferation that results in increased biomass production at industrial scale bioprocesses.
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Affiliation(s)
- Sang-Min Paik
- Interdisciplinary Program for Bioengineering, Seoul National University, Seoul 08826, Republic of Korea
| | - EonSeon Jin
- Department of Life Science, College of Natural Sciences, Hanyang University, Seoul 04763, Republic of Korea
| | - Sang Jun Sim
- Department of Chemical and Biological Engineering, Korea University, Seoul 02846, Republic of Korea
| | - Noo Li Jeon
- Interdisciplinary Program for Bioengineering, Seoul National University, Seoul 08826, Republic of Korea; School of Mechanical and Aerospace Engineering, Seoul National University, Seoul 08826, Republic of Korea; Institute of Advanced Mechanics and Design, Seoul National University, Seoul 08826, Republic of Korea.
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28
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Veresoglou SD, Wang D, Andrade-Linares DR, Hempel S, Rillig MC. Fungal Decision to Exploit or Explore Depends on Growth Rate. MICROBIAL ECOLOGY 2018; 75:289-292. [PMID: 28791465 DOI: 10.1007/s00248-017-1053-4] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/13/2017] [Accepted: 07/31/2017] [Indexed: 05/28/2023]
Affiliation(s)
- Stavros D Veresoglou
- Institut für Biologie, Freie Universität Berlin, Altensteinstr. 6, 14195, Berlin, Germany.
- Berlin-Brandenburg Institute of Advanced Biodiversity Research (BBIB), 14195, Berlin, Germany.
| | - Dongwei Wang
- Institut für Biologie, Freie Universität Berlin, Altensteinstr. 6, 14195, Berlin, Germany
- Berlin-Brandenburg Institute of Advanced Biodiversity Research (BBIB), 14195, Berlin, Germany
| | - Diana R Andrade-Linares
- Institut für Biologie, Freie Universität Berlin, Altensteinstr. 6, 14195, Berlin, Germany
- Berlin-Brandenburg Institute of Advanced Biodiversity Research (BBIB), 14195, Berlin, Germany
| | - Stefan Hempel
- Institut für Biologie, Freie Universität Berlin, Altensteinstr. 6, 14195, Berlin, Germany
- Berlin-Brandenburg Institute of Advanced Biodiversity Research (BBIB), 14195, Berlin, Germany
| | - Matthias C Rillig
- Institut für Biologie, Freie Universität Berlin, Altensteinstr. 6, 14195, Berlin, Germany
- Berlin-Brandenburg Institute of Advanced Biodiversity Research (BBIB), 14195, Berlin, Germany
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29
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Ryo M, Rillig MC. Statistically reinforced machine learning for nonlinear patterns and variable interactions. Ecosphere 2017. [DOI: 10.1002/ecs2.1976] [Citation(s) in RCA: 57] [Impact Index Per Article: 8.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/17/2023] Open
Affiliation(s)
- Masahiro Ryo
- Institute of Biology; Freie Universität Berlin; D-14195 Berlin Germany
- Berlin-Brandenburg Institute of Advanced Biodiversity Research; D-14195 Berlin Germany
| | - Matthias C. Rillig
- Institute of Biology; Freie Universität Berlin; D-14195 Berlin Germany
- Berlin-Brandenburg Institute of Advanced Biodiversity Research; D-14195 Berlin Germany
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