Cropping systems in agriculture and their impact on soil health-A review

Impact of Agricultural Activities on Climate Change: A Review of Greenhouse Gas Emission Patterns in Field Crop Systems

This review paper synthesizes the current understanding of greenhouse gas (GHG) emissions from field cropping systems. It examines the key factors influencing GHG emissions, including crop type, management practices, and soil conditions. The review highlights the variability in GHG emissions across different cropping systems. Conventional tillage systems generally emit higher levels of carbon dioxide (CO2) and nitrous oxide (N2O) than no-till or reduced tillage systems. Crop rotation, cover cropping, and residue management can significantly reduce GHG emissions by improving soil carbon sequestration and reducing nitrogen fertilizer requirements. The paper also discusses the challenges and opportunities for mitigating GHG emissions in field cropping systems. Precision agriculture techniques, such as variable rate application of fertilizers and water, can optimize crop production while minimizing environmental impacts. Agroforestry systems, which integrate trees and crops, offer the potential for carbon sequestration and reducing N2O emissions. This review provides insights into the latest research on GHG emissions from field cropping systems and identifies areas for further study. It emphasizes the importance of adopting sustainable management practices to reduce GHG emissions and enhance the environmental sustainability of agricultural systems.

Maize edible-legumes intercropping systems for enhancing agrobiodiversity and belowground ecosystem services

Intensification of staple crops through conventional agricultural practices with chemical synthetic inputs has yielded positive outcomes in food security but with negative environmental impacts. Ecological intensification using cropping systems such as maize edible-legume intercropping (MLI) systems has the potential to enhance soil health, agrobiodiversity and significantly influence crop productivity. However, mechanisms underlying enhancement of biological soil health have not been well studied. This study investigated the shifts in rhizospheric soil and maize-root microbiomes and associated soil physico-chemical parameters in MLI systems of smallholder farms in comparison to maize-monoculture cropping systems (MMC). Maize-root and rhizospheric soil samples were collected from twenty-five farms each conditioned by MLI and MMC systems in eastern Kenya. Soil characteristics were assessed using Black oxidation and Walkley methods. High-throughput amplicon sequencing was employed to analyze fungal and bacterial communities, predicting their functional roles and diversity. The different MLI systems significantly impacted soil and maize-root microbial communities, resulting in distinct microbe sets. Specific fungal and bacterial genera and species were mainly influenced and enriched in the MLI systems (e.g., Bionectria solani, Sarocladium zeae, Fusarium algeriense, and Acremonium persicinum for fungi, and Bradyrhizobium elkanii, Enterobacter roggenkampii, Pantoea dispersa and Mitsuaria chitosanitabida for bacteria), which contribute to nutrient solubilization, decomposition, carbon utilization, plant protection, bio-insecticides/fertilizer production, and nitrogen fixation. Conversely, the MMC systems enriched phytopathogenic microbial species like Sphingomonas leidyi and Alternaria argroxiphii. Each MLI system exhibited a unique composition of fungal and bacterial communities that shape belowground biodiversity, notably affecting soil attributes, plant well-being, disease control, and agroecological services. Indeed, soil physico-chemical properties, including pH, nitrogen, organic carbon, phosphorus, and potassium were enriched in MLI compared to MMC cropping systems. Thus, diversification of agroecosystems with MLI systems enhances soil properties and shifts rhizosphere and maize-root microbiome in favor of ecologically important microbial communities.

Tobacco crop rotation enhances the stability and complexity of microbial networks

Introduction

The effects of continuous cropping and rotation cropping, two important tobacco cultivation practices, on soil microbial communities at different stages remain unclear. Different planting patterns have been shown to influence soil physical and chemical properties, which in turn can affect the composition and diversity of soil microbial communities.

Methods

In order to investigate the impact of different planting methods on soil microbial community structure, we selected two representative planting methods: continuous cropping (tobacco) and rotational cropping (tobacco-maize). These methods were chosen as the focal points of our research to explore the potential effects on soil microbial communities. High-throughput sequencing technology was employed to investigate the structure of soil microbial communities, as well as their relationships with soil environmental factors, by utilizing the 16S rRNA, ITS, and 18S genes. Furthermore, the interaction among microorganisms was explored through the application of the Random Matrix Theory (RMT) molecular ecological network approach.

Results

There was no significant difference in α diversity, but significant difference in β diversity based on Jaccard distance test. Compared to continuous cropping, crop rotation significantly increased the abundance of beneficial prokaryotes Verrucomicrobia and Rhodanobacter. These findings indicate that crop rotation promotes the enrichment of Verrucomicrobia and Rhodanobacter in the soil microbial community. AP and NH4-N had a greater effect on the community structure of prokaryotes and fungi in tobacco soil, while only AP had a greater effect on the community structure of protist. Molecular ecological network analysis showed that the network robustness and Cohesion of rotation were significantly higher than that of continuous cropping, indicating that the complexity and stability of molecular ecological networks were higher in the rotational, and the microbial communities cooperated more effectively, and the community structure was more stable.

Discussion

From this point of view, rotational cropping is more conducive to changing the composition of soil microbial community, enhancing the stability of microbial network structure, and enhancing the potential ecological functions in soil.

Agriculture and environmental management through nanotechnology: Eco-friendly nanomaterial synthesis for soil-plant systems, food safety, and sustainability

Through the advancement of nanotechnology, agricultural and food systems are undergoing strategic enhancements, offering innovative solutions to complex problems. This scholarly essay thoroughly examines nanotechnological innovations and their implications within these critical industries. Traditional practices are undergoing radical transformation as nanomaterials emerge as novel agents in roles traditionally filled by fertilizers, pesticides, and biosensors. Micronutrient management and preservation techniques are further enhanced, indicating a shift towards more nutrient-dense and longevity-oriented food production. Nanoparticles (NPs), with their unique physicochemical properties, such as an extraordinary surface-to-volume ratio, find applications in healthcare, diagnostics, agriculture, and other fields. However, concerns about their potential overuse and bioaccumulation raise unanswered questions about their health effects. Molecule-to-molecule interactions and physicochemical dynamics create pathways through which nanoparticles cause toxicity. The combination of nanotechnology and environmental sustainability principles leads to the examination of green nanoparticle synthesis. The discourse extends to how nanomaterials penetrate biological systems, their applications, toxicological effects, and dissemination routes. Additionally, this examination delves into the ecological consequences of nanomaterial contamination in natural ecosystems. Employing robust risk assessment methodologies, including the risk allocation framework, is recommended to address potential dangers associated with nanotechnology integration. Establishing standardized, universally accepted guidelines for evaluating nanomaterial toxicity and protocols for nano-waste disposal is urged to ensure responsible stewardship of this transformative technology. In conclusion, the article summarizes global trends, persistent challenges, and emerging regulatory strategies shaping nanotechnology in agriculture and food science. Sustained, in-depth research is crucial to fully benefit from nanotechnology prospects for sustainable agriculture and food systems.

Changes in chemical properties and microbial communities' composition of a forest litter-based biofertilizer produced through aerated solid-state culture under different oxygen conditions

Fermented forest litter (FFL) is a bioproduct used as biofertilizer for several decades in Eastern Asia and Latin America. It is locally handcrafted by farmers in anaerobic conditions by fermenting forest litter added with agricultural by-products such as whey, cereal bran, and molasses. The aim of this study was to characterize the FFL process and product through gas and liquid chromatography analyses. It also provides some highlights on the influence of O2 on this solid-state culture. Under anoxic condition, a maximum CO2 production rate (CDPR) of 0.41 mL/h∙g dry matter (dm) was reached after 8 days. The main volatile organic compounds (VOCs) were ethanol and ethyl acetate, with a production rate profile similar to CDPR. After 21 days of culture, no residual sucrose nor lactose was detected. Lactic and acetic acids reached 58.8 mg/g dm and 10.2 mg/g dm, respectively, ensuring the acidification of the matrix to a final pH of 4.72. A metabarcoding analysis revealed that heterolactic acid bacteria (Lentilactobacillus, Leuconostoc), homolactic acid bacteria (Lactococcus), and yeasts (Saccharomyces, Clavispora) were predominant. Predicted genes in the microbiome confirmed the potential link between detected bacteria and acids and VOCs produced. When O2 was fed to the cultures, final pH reached values up to 8.5. No significant amounts of lactic nor acetic acid were found. In addition, a strong shift in microbial communities was observed, with a predominance of Proteobacteria and molds, among which are potential pathogens like Fusarium species. This suggests that particular care must be brought to maintain anoxic conditions throughout the process.

Long-term push-pull cropping system shifts soil and maize-root microbiome diversity paving way to resilient farming system

BACKGROUND

The soil biota consists of a complex assembly of microbial communities and other organisms that vary significantly across farming systems, impacting soil health and plant productivity. Despite its importance, there has been limited exploration of how different cropping systems influence soil and plant root microbiomes. In this study, we investigated soil physicochemical properties, along with soil and maize-root microbiomes, in an agroecological cereal-legume companion cropping system known as push-pull technology (PPT). This system has been used in agriculture for over two decades for insect-pest management, soil health improvement, and weed control in sub-Saharan Africa. We compared the results with those obtained from maize-monoculture (Mono) cropping system.

RESULTS

The PPT cropping system changed the composition and diversity of soil and maize-root microbial communities, and led to notable improvements in soil physicochemical characteristics compared to that of the Mono cropping system. Distinct bacterial and fungal genera played a crucial role in influencing the variation in microbial diversity within these cropping systems. The relative abundance of fungal genera Trichoderma, Mortierella, and Bionectria and bacterial genera Streptomyces, RB41, and Nitrospira were more enriched in PPT. These microbial communities are associated with essential ecosystem services such as plant protection, decomposition, carbon utilization, bioinsecticides production, nitrogen fixation, nematode suppression, phytohormone production, and bioremediation. Conversely, pathogenic associated bacterial genus including Bryobacter were more enriched in Mono-root. Additionally, the Mono system exhibited a high relative abundance of fungal genera such as Gibberella, Neocosmospora, and Aspergillus, which are linked to plant diseases and food contamination. Significant differences were observed in the relative abundance of the inferred metabiome functional protein pathways including syringate degradation, L-methionine biosynthesis I, and inosine 5'-phosphate degradation.

CONCLUSION

Push-pull cropping system positively influences soil and maize-root microbiomes and enhances soil physicochemical properties. This highlights its potential for agricultural and environmental sustainability. These findings contribute to our understanding of the diverse ecosystem services offered by this cropping system where it is practiced regarding the system's resilience and functional redundancy. Future research should focus on whether PPT affects the soil and maize-root microbial communities through the release of plant metabolites from the intercrop root exudates or through the alteration of the soil's nutritional status, which affects microbial enzymatic activities.

Intensified seed spices-based cropping systems for higher productivity, resource-use efficiency, soil fertility and profitability in arid and semi-arid regions of India

Coriander, fenugreek, nigella etc. are collectively known as seed spices. They are "High value and low volume crops" and considered cash crops for the growers of arid and semi-arid regions of India. Coriander, fenugreek and nigella are grown during the rabi season and take hardly 130-140 days to attain full maturity. In this context, farmers are not able to develop income from available arable land round the year, even though they have sufficient resources as well as manpower. Therefore, coriander, fenugreek and nigella-based cropping systems, four of each (total 12) were evaluated during 3 consecutive years (2019-20 to 2021-22) for their productivity, resource-use efficiency, economics and soil fertility. The results showed that among the seed spices-based cropping systems, maximum system productivity (5193 kg ha-1), production efficiency (18.81 kg ha-1 day-1), water-use efficiency (2.31 kg ha-1 mm-1), economic efficiency (11.85 US $ ha-1 day-1), net return (3270 US $ ha-1), benefit:cost ratio (3.27) and available N (165.6 kg ha-1) were observed under nigella-green coriander-mungbean cropping system. Hence, seed spices growers are recommended to adopt nigella-green coriander-mungbean cropping system in order to realize better productivity, resource-use efficiency, soil fertility and profitability.

Adapting crop production to climate change and air pollution at different scales

Air pollution and climate change are tightly interconnected and jointly affect field crop production and agroecosystem health. Although our understanding of the individual and combined impacts of air pollution and climate change factors is improving, the adaptation of crop production to concurrent air pollution and climate change remains challenging to resolve. Here we evaluate recent advances in the adaptation of crop production to climate change and air pollution at the plant, field and ecosystem scales. The main approaches at the plant level include the integration of genetic variation, molecular breeding and phenotyping. Field-level techniques include optimizing cultivation practices, promoting mixed cropping and diversification, and applying technologies such as antiozonants, nanotechnology and robot-assisted farming. Plant- and field-level techniques would be further facilitated by enhancing soil resilience, incorporating precision agriculture and modifying the hydrology and microclimate of agricultural landscapes at the ecosystem level. Strategies and opportunities for crop production under climate change and air pollution are discussed.

Comparative analysis of monocropping and mixed cropping systems on selected soil properties, soil organic carbon stocks, and simulated maize yields in drought-hotspot regions of Rwanda

Rainfed agriculture which is the mainstay of the Rwandan economy has been severely affected by prolonged droughts and climate change impacts, resulting in severe food insecurity. In the Eastern Province, the adoption of monocropping (MnC) systems at dissent driven by the CIP may critically worsen the rain-fed agricultural gains against mixed cropping (MxC) systems in drought conditions. Therefore, this study aimed to analyze and compare soil organic carbon (SOC) stocks and simulated maize biomass and grain yields under MnC and MxC systems in Kayonza District, Rwanda. Soil samples (n = 96) were collected in 0-30 and 30-60 cm depths following the stratified simple random sampling technique. The SOC stocks were determined following the guidelines of the FAO of 2018. The biomass and grain yield for the past 20 years (2001-2021) was simulated using a calibrated and validated AquaCrop model (version 6.1) using daily climate data obtained from RMA, and maize crop, raw soil, and land management features collected at the field. The data were analyzed using IBM SPSS software (version 25). The results show that the SOC stocks of MxC soils were significantly (p < 0.001) higher (67.4 ± 1.8 tC ha-1) than that of the MnC soils (52.0 ± 3.8 tC ha-1). The depths avowed more highly significant (p < 0.001) SOC stocks in topsoils (0-30 cm depth) than that of the subsoils (30-60 cm depth) in the two cropping systems. This indicates that MxC sequesters more carbon and revamps soil C pools than the MnC system. The results also indicate that the simulated biomass and grain yields were highly significantly (p < 0.001) higher more and stable in MxC than in MnC fields for the entire past 20 years. Harnessing these findings, as C pools were monitored and analyzed in this study, N-bio-chemistry dynamics should also be conducted thereby comparing its environmental pools and impacts to both below and above-ground ecotones.

Dynamics of soil properties as impacted by contrasting lithology, slope class, and land use types: a case study in semi-arid highlands of northern Ethiopia

Soil characterization is crucial in creating sustainable platforms for land users to identify areas vulnerable to anthropogenic activities. This study was conducted to investigate the impacts of lithology, slope, and land use on soil properties of a semi-arid highland in northern Ethiopia. Disturbed and undisturbed soil samples collected from 0 to 30 cm depth were analyzed. Most of the assessed physical and biochemical soil properties varied significantly (p < 0.05) with lithology, slope class, and land use type. Shale-originated soils were richer in nutrients than soils of other lithologies. A decrease in slope gradient accounted for an increase in most soil properties, while a reverse trend was observed for sand content, bulk density (BD), water stable aggregates (WSA), mean weight diameter (MWD), structural stability index (SSI), soil organic carbon (SOC), total nitrogen (TN), and available phosphorus (AP). Silt and clay fractions, total porosity, moisture content at field capacity and wilting point, visual evaluation of soil structure, pH, electrical conductivity, calcium carbonate, exchangeable bases, cation exchange capacity, and percent base saturation were found to be higher for cultivated land soils compared to grass land and shrub land soils. Shrub land soils, in contrast, had higher WSA, MWD, SSI, SOC, TN, and AP relative to grass land and cultivated land soils. In summary, slope class and land use type stood out as the major drivers influencing the dynamics and distribution of soil properties other than lithology and their interactions in semi-arid highlands of northern Ethiopia. Thus, from sustainability point of view and in the light of their nutrient retention capability and limitation, more attention should be paid toward ensuring periodic assessment and sustainable management of soils in steep cultivated lands.

Influence of Intensive and Super-Intensive Olive Grove Management on Soil Quality-Nutrients Content and Enzyme Activities

Agricultural soil quality is an issue that has been widely debated in the literature in recent decades. Three olive grove areas (one in Lisbon and the others in Santarém, Portugal) with different management techniques (intensive and super-intensive) were selected. Nutrient concentrations and enzyme activities of soils were determined, as well as the C and N of litter and pruning waste (mulch) to estimate the influence of management techniques on the quality of olive grove soils and to assess the extent to which they are affected by organic covers and different cultivation intensities. Organic C and total N concentrations in soils of the intensive olive grove in Lisbon were the highest when compared with those in the intensive and super-intensive olive groves soils of Santarém. The concentrations of Ca, Mg, Na, and K were the main differences between the Lisbon olive groves and the other two from Santarém. Phosphatase, cellulase, and urease activities were related to the Na, extractable K, extractable P, Zn, Mn, organic C, and total N soil concentrations. Soil management and agricultural practices are determining factors for these enzymatic activities of Santarém olive groves, although climate conditions and soil properties play an important role in the soil enzymatic activities.

Soil and Phytomicrobiome for Plant Disease Suppression and Management under Climate Change: A Review

The phytomicrobiome plays a crucial role in soil and ecosystem health, encompassing both beneficial members providing critical ecosystem goods and services and pathogens threatening food safety and security. The potential benefits of harnessing the power of the phytomicrobiome for plant disease suppression and management are indisputable and of interest in agriculture but also in forestry and landscaping. Indeed, plant diseases can be mitigated by in situ manipulations of resident microorganisms through agronomic practices (such as minimum tillage, crop rotation, cover cropping, organic mulching, etc.) as well as by applying microbial inoculants. However, numerous challenges, such as the lack of standardized methods for microbiome analysis and the difficulty in translating research findings into practical applications are at stake. Moreover, climate change is affecting the distribution, abundance, and virulence of many plant pathogens, while also altering the phytomicrobiome functioning, further compounding disease management strategies. Here, we will first review literature demonstrating how agricultural practices have been found effective in promoting soil health and enhancing disease suppressiveness and mitigation through a shift of the phytomicrobiome. Challenges and barriers to the identification and use of the phytomicrobiome for plant disease management will then be discussed before focusing on the potential impacts of climate change on the phytomicrobiome functioning and disease outcome.

Harnessing nitrate over ammonium to sustain soil health during monocropping

Introduction

In achieving food security and sustainable agricultural development, improving and maintaining soil health is considered as a key driving factor. The improvement based on different forms of nitrogen fertilization has aroused great public interest in improving and restoring monocropping obstacles for specific soil problems.

Methods

For this, a short-term cucumber cropping field experiment was conducted in the subtropical region of China under four fertilization treatments: ammonium (AN), nitrate (NN), ammonium with dicyandiamide (AN+DCD), nitrate with dicyandiamide (NN+DCD). In this study, we measured the effects of nitrogen forms addition on plant productivity and soil health in a monocropping system over seven seasons.

Results

To systematically evaluate soil health, a wide range of soil environmental factors were measured and incorporated into the soil health index (SHI) by entropy method. Compared with ammonium treatment (SHI_AN = 0.059, SHI_AN+DCD = 0.081), the positive effect of nitrate was mainly reflected in improving soil health (SHI_NN = 0.097, SHI_NN+DCD = 0.094), which was positively correlated with the increase in plant productivity of cucumber after seven seasons of monocropping. The most critical factor affecting SHI is soil ammonium nitrogen content, which was negatively correlated with plant productivity.

Discussion

Nitrate promotes soil health and plant productivity by optimizing soil environmental factors. The study thus emphasized the necessity of nitrate input for the sustenance of soil-crop ecosystems, with the consequent possibility of application of the results in planning monoculture obstacle prevention and management measures.

Long-Term Tillage and Crop Rotation Regimes Reshape Soil-Borne Oomycete Communities in Soybean, Corn, and Wheat Production Systems

Soil-borne oomycetes include devastating plant pathogens that cause substantial losses in the agricultural sector. To better manage this important group of pathogens, it is critical to understand how they respond to common agricultural practices, such as tillage and crop rotation. Here, a long-term field experiment was established using a split-plot design with tillage as the main plot factor (conventional tillage (CT) vs. no till (NT), two levels) and rotation as the subplot factor (monocultures of soybean, corn, or wheat, and corn-soybean-wheat rotation, four levels). Post-harvest soil oomycete communities were characterized over three consecutive years (2016-2018) by metabarcoding the Internal Transcribed Spacer 1 (ITS1) region. The community contained 292 amplicon sequence variants (ASVs) and was dominated by Globisporangium spp. (85.1% in abundance, 203 ASV) and Pythium spp. (10.4%, 51 ASV). NT decreased diversity and community compositional structure heterogeneity, while crop rotation only affected the community structure under CT. The interaction effects of tillage and rotation on most oomycetes species accentuated the complexity of managing these pathogens. Soil and crop health represented by soybean seedling vitality was lowest in soils under CT cultivating soybean or corn, while the grain yield of the three crops responded differently to tillage and crop rotation regimes.

Soil health and management matters: A survey of field tree nursery producers

Extensive calls for increased tree planning worldwide are highlighting the need for management changes in the field tree nursery sector. Healthy soil is the foundation for sustainable agricultural systems, and best practices for soil management confer tangible benefits to producers as well as broader system-wide benefits. However, field tree producers lack the foundational resources needed to implement, manage, and evaluate soil health practices within their operations. Furthermore, tree producers are unique in that their primary product is central to the sustainable development of urban spaces and are facing increased demand for high-quality trees. There is subsequently a two-pronged need. First, a greater understanding of the key objectives, opportunities, and challenges driving soil management in tree production is required to support the development of specified practices, within the sector. Second, a greater characterization of the short- and long-term value of trees is required to incentivize the soil health practices that will support resilience in tree production systems. The study characterizes the soil health and management practices implemented in Ontario by field tree nursery producers. A questionnaire was administered in the summer of 2020 to Ontario tree nursery producers within the Landscape Ontario Horticultural Trades Association (N = 29). Responding producers provided insight into soil management practices, opportunities and challenges. Tree nursery producers expressed a need for resources to support cover crop usage and comprehensive soil testing to improve tree performance. Reflection on current soil management challenges and opportunities highlights the benefits of considering soil management as one aspect within the broader social-ecological system.

Treated Livestock Wastewater Irrigation Is Safe for Maize (Zea mays) and Soybean (Glycine max) Intercropping System Considering Heavy Metals Migration in Soil-Plant System

Water deficit is a major problem affecting crop production worldwide. The use of treated wastewater in irrigation systems improves soil health and enhances crop growth and productivity. However, it has been characterized as a source of heavy metals. The unknown is how heavy metals' movements would be impacted under an intercropping system when irrigated with treated wastewater. Understanding the dynamic of heavy metals in soil-plant systems is essential for environmental risk assessment and sustainable agriculture. A greenhouse pot experiment was conducted to explore the effects of treated wastewater irrigation on plant growth, soil chemical properties, and the movements of Zn, Cu, Pb, and Cd from soil to plants in monoculture and intercropping systems. Maize and soybean were selected as the test crops and groundwater and treated livestock wastewater as the water sources. This study found that treated wastewater irrigation and intercropping systems synergically increased the soil nutrient content and crop growth. The concentrations of Zn, Pb, and Cd were significantly higher in leaves compared to other plant parts contrastingly to Cu, which was higher in roots. In addition, treated wastewater irrigation increased grain nutrient content in mono- and intercropping systems while the concentration of heavy metals was in the acceptable range for human consumption. The enrichment degree of Cu and Pb due to treated livestock wastewater irrigation relative to groundwater irrigation was higher in uncultivated soil compared with cultivated soil. This study showed that the intercropping system facilitated heavy metals' transfer from soil to plant except for Cd. These findings provide guidelines for a safe utilization of treated wastewater in agricultural systems and to reduce freshwater use pressure.

Impact of climate change on grape berry ripening: An assessment of adaptation strategies for the Australian vineyard

Compressed vintages, high alcohol and low wine acidity are but a few repercussions of climate change effects on Australian viticulture. While warm and cool growing regions may have different practical concerns related to climate change, they both experience altered berry and must composition and potentially reduced desirable wine characteristics and market value. Storms, drought and uncertain water supplies combined with excessive heat not only depress vine productivity through altered physiology but can have direct consequences on the fruit. Sunburn, shrivelling and altered sugar-flavour-aroma balance are becoming more prevalent while bushfires can result in smoke taint. Moreover, distorted pest and disease cycles and changes in pathogen geographical distribution have altered biotic stress dynamics that require novel management strategies. A multipronged approach to address these challenges may include alternative cultivars and rootstocks or changing geographic location. In addition, modifying and incorporating novel irrigation regimes, vine architecture and canopy manipulation, vineyard floor management, soil amendments and foliar products such as antitranspirants and other film-forming barriers are potential levers that can be used to manage the effects of climate change. The adoption of technology into the vineyard including weather, plant and soil sensors are giving viticulturists extra tools to make quick decisions, while satellite and airborne remote sensing allow the adoption of precision farming. A coherent and comprehensive approach to climate risk management, with consideration of the environment, ensures that optimum production and exceptional fruit quality is maintained. We review the preliminary findings and feasibility of these new strategies in the Australian context.

Differentially enriched fungal communities in root rot resistant and susceptible varieties of tobacco (Nicotiana tabacum L.) under continuous monoculture cropping

Root rot is a major disease of tobacco that causes crop losses of up to 15-20% of global tobacco production. The present study aimed to compare the fungal communities, and physicochemical properties of rhizosphere soil of root rot resistant (Yunyan 87; Y) and susceptible (Honghua Dajinyuan; H) tobacco varieties. Four treatments of each variety under continuous monocropping cultures included: control groups (HT0 and YT0); 2 years of continuous cropping (HT2 and YT2); 4 years of continuous cropping (HT4 and YT4); and 8 years of continuous cropping (YT8 and HT8). The soil physicochemical properties including available nitrogen (AN), available phosphorus (AP), available potassium (AK), and organic matter (OM) were increased (p < 0.05) from HT0 to HT8, whereas the resistant variety (Y) showed an inconsistent trend from YT0 to YT8. The pH was decreased (p < 0.05) from HT0 to HT8 and YT0 to YT8. Further, the disease incidence rate and disease index of the H variety also increased (p < 0.05) from HT0 to HT8. Alpha diversity analysis revealed that susceptible variety had higher fungal diversity from HT0 to HT8, while resistant variety exhibited lower diversity from YT0 to YT8. Ascomycota and Mortierellomycota were the dominant phyla in H and Y. Ascomycota abundance was increased (p < 0.05), whereas Mortierellomycota was decreased (p < 0.05) for continuous cropping years in H and Y. Penicillium, Fusarium, and Chrysosporium were the top three abundant genera in both varieties. The relative abundance of Penicillium spp. was increased (p < 0.05) in Y, whereas decreased (p < 0.05) in H variety. Specifically, Chrysosporium spp. was increased (p < 0.05) whereas Fusarium spp. was decreased (p < 0.05) in YT2. Redundancy analysis (RDA) revealed that fungal communities in H and Y rhizospheres were influenced by pH and carbon content, respectively. The top three highly enriched (p < 0.05) pathways in both varieties were fatty acid elongation, fatty acid β-oxidation I, and glyoxylate cycle. Our study concluded that resistant variety exhibited lower fungal diversity and functionally enriched metabolic pathways than susceptible variety that might be the result of molecular breeding practices, however, the relative abundance of Penicillium spp. were increased in resistant variety under long-term monoculture cropping.

Volatile Organic Compounds from a Lichen-Associated Bacterium, Paenibacillus etheri, Interact with Plant-Parasitic Cyst Nematodes

Healthy food is one of the major challenges to develop in this century. Plant-parasitic nematodes cause significant damage to many crops worldwide and till now, the use of chemical nematicides is the main means to control their populations. These chemical products must be replaced by more environmental-friendly control methods. Biocontrol methods seem to be one promising option, and the number of biopesticides derived from living organisms has increased in the last decades. To develop new plant protection products, we have decided to combine our skills in natural products chemistry and nematology and to focus on the lichen microecosystem as underexploited ecological niches of microorganisms. We present herein the potential of lichen-associated bacterial suspensions from Paenibacillus etheri as nematicides against the beet cyst nematode Heterodera schachtii and the potato cyst nematode Globodera pallida, in particular the effects of volatile organic compounds (VOCs) produced by the bacteria. A solid phase micro-extraction method associated to gas chromatography-mass spectrometry analysis of 14 day cultures was used to analyze these VOCs in order to identify the main produced compounds (isoamyl acetate and 2-phenylethyl acetate) and to evaluate them on the nematodes.

Azospirillum brasilense and Zinc Rates Effect on Fungal Root Colonization and Yield of Wheat-Maize in Tropical Savannah Conditions

A successful microbial inoculant can increase root colonization and establish a positive interaction with native microorganisms to promote growth and productivity of cereal crops. Zinc (Zn) is an intensively reported deficient nutrient for maize and wheat production in Brazilian Cerrado. It can be sustainably managed by inoculation with plant growth-promoting bacteria and their symbiotic association with other microorganisms such as arbuscular mycorrhizal fungi (AMF) and dark septate endophytes (DSE). The objective of this study was to evaluate the effect of Azospirillum brasilense inoculation and residual Zn rates on root colonization and grain yield of maize and wheat in succession under the tropical conditions of Brazil. These experiments were conducted in a randomized block design with four replications and arranged in a 5 × 2 factorial scheme. The treatments consisted of five Zn rates (0, 2, 4, 6 and 8 kg ha^-1) applied from zinc sulfate in maize and residual on wheat and without and with seed inoculation of A. brasilense. The results indicated that root colonization by AMF and DSE in maize-wheat cropping system were significantly increased with interaction of Zn rates and inoculation treatments. Inoculation with A. brasilense at residual Zn rates of 4 kg ha^-1 increased root colonization by AMF under maize cultivation. Similarly, inoculation with A. brasilense at residual Zn rates of 2 and 4 kg ha^-1 reduced root colonization by DSE under wheat in succession. The leaf chlorophyll index and leaf Zn concentration were increased with inoculation of the A. brasilense and residual Zn rates. The inoculation did not influence AMF spore production and CO₂-C in both crops. The grain yield and yield components of maize-wheat were increased with the inoculation of A. brasilense under residual Zn rates of 3 to 4 kg ha^-1 in tropical savannah conditions. Inoculation with A. brasilense under residual Zn rates up to 4 kg ha^-1 promoted root colonization by AMF and DSE in the maize cropping season. While the inoculation with A. brasilense under 2 and 4 kg ha^-1 residual Zn rates reduced root colonization by AMF and DSE in the wheat cropping season. Therefore, inoculation with A. brasilense in combination with Zn fertilization could consider a sustainable approach to increase the yield and performance of the maize-wheat cropping system in the tropical savannah conditions of Brazil.

Rediscovering wild food to diversify production across Australia's agricultural landscapes

Conventional agriculture currently relies on the intensive and expansive growth of a small number of monocultures, this is both risky for food security and is causing substantial environmental degradation. Crops are typically grown far from their native origins, enduring climates, pests, and diseases that they have little evolutionary adaptation to. As a result, farming practices involve modifying the environment to suit the crop, often via practices including vegetation clearing, drainage, irrigation, tilling, and the application of fertilizers, pesticides, and herbicides. One avenue for improvement, however, is the diversification of monoculture agricultural systems with traditional foods native to the area. Native foods benefit from evolutionary history, enabling adaptation to local environmental conditions, reducing the need for environmental modifications and external inputs. Traditional use of native foods in Australia has a rich history, yet the commercial production of native foods remains small compared with conventional crops, such as wheat, barley and sugarcane. Identifying what native crops can grow where would be a first step in scoping potential native food industries and supporting farmers seeking to diversify their cropping. In this study, I modeled the potentially suitable distributions of 177 native food and forage species across Australia, given their climate and soil preferences. The coastal areas of Queensland's wet tropics, south-east Queensland, New South Wales, and Victoria were predicted to support the greatest diversity of native food and forage species (as high 80–120 species). These areas also correspond to the nation's most agriculturally intensive areas, including much of the Murray-Darling Basin, suggesting high potential for the diversification of existing intensive monocultures. Native crops with the most expansive potential distribution include Acacia trees, Maloga bean, bush plum, Emu apple, native millet, and bush tomatoes, with these crops largely being tolerant of vast areas of semi-arid conditions. In addition to greater food security, if diverse native cropping results in greater ecosystem service provisioning, through carbon storage, reduced water usage, reduced nutrient runoff, or greater habitat provision, then payment for ecosystem service schemes could also provide supplemental farm income.

Impact of Short-Term Cultivation on Some Selected Properties of Sandy Soil in an Arid Environment

Soil management is recognized to have an impact on soil quality attributes. Depending on the management approach, this impact can either degrade or improve soil quality. There is a severe shortage of information on the impacts of cultivation on sandy soil properties in arid desert regions. Therefore, the objective of this study was to investigate the short-term cultivation effects (5 years) on the properties’ changes of coarse-textured soil in an arid desert region in western Assiut Governorate, Egypt. The current study was conducted on soils sampled at four depth intervals, namely 0–10, 10–20, 20–30, and 30–40 cm, from both cultivated and uncultivated soils, using a systematic sampling grid (10 × 10 m), to investigate the potential impacts of the cultivation process on six soil attributes. Each land use was represented by an area of 0.5 ha (50 × 100 m). A total of 160 composite soil samples (at all depths) were collected from both soils and analyzed for their physical and chemical properties, employing standard laboratory procedures. The data were statistically and geostatistically analyzed to compare the results and map the spatial distributions of the selected soil properties. The results revealed that cultivation had a considerable positive impact on most of the properties of cultivated soil compared to those of uncultivated soil (virgin land). The findings also showed that the available phosphorus levels in cultivated soil were higher than in virgin soil by 16, 9, 8.5, and 6 folds, with increases in organic matter content of 16.8, 12.4, 11.9, and 7.9 times at depths of 0–10, 10–20, 20–30, and 30–40 cm, respectively. Furthermore, compared to virgin soil, cultivated soil exhibited a salinity reduction of −8.9%, −56.4%, −66.3%, and −71.8%, at depths of 0–10, 10–20, 20–30, and 30–40 cm, respectively. Moreover, some other properties of the cultivated soil improved, particularly in the surface soil layers, such as pH reduction, CaCO3 decline, and CEC increase, while the soil texture grade did not change. Therefore, continuous monitoring of the effects of diverse soil management strategies in the short term assists in the understanding of the ongoing changes in soil physical and chemical characteristics, which is critical for maintaining satisfactory soil quality and sustainable soil productivity in arid lands.

Agricultural soil physico-chemical parameters and microbial abundance and diversity under long-run farming practices: A greenhouse study

The growth of agriculture led to indiscriminate use of synthetic pesticides or fertilizers and unsustainable crop management farming practices which can aggravate harmful impacts on the microbial population and physical and chemical characteristics of soil ecosystem. Based on this fact, the present study was planned to evaluate the effect of long run farming practices on different soil physico-chemical parameters and soil microbial abundance and diversity within different soil depth (0–20 cm and 20–40 cm) at Quzhou Experimental Station of China Agricultural University, Hebei, China during October and December, 2016. The effect of farming practices on soil microbial abundance and diversity was studied by phospho-lipid fatty acid (PLFA) and DNA high-throughput sequencing methods. The findings revealed that soil is neutral to slightly alkaline in nature with highest water content under organic farming (ORF) at 0–20 cm and least under conventional farming at 20–40 cm depth. It was found that the ORF significantly increased the contents of total organic carbon (TOC), total carbon (TC), ammonium nitrogen, available nitrogen (AN), total nitrogen (TN), total phosphorus (TP), and available phosphorus (AP) followed by low input and conventional farming modes in both October and December soil samples. The correlation analysis showed significantly (at p ≤ 0.05 and 0.01) strong positive relationship within different physical and chemical properties of the soil under study. ANOVA and MANOVA analysis indicated significant effect of interaction between soil depth and farming modes on soil parameters. PCA analysis showed the most significant correlation between most of the bacterial types (G + bacteria, G− bacteria, actinomycetes) and soil AP, total available nitrogen, TOC and soil WC. Pearson correlation analysis revealed a significant correlation between microbial phylum groups (Proteobacteria, Bacteroidetes, and Latescibacteria) and microbial class group (Alphaproteobacteria, Sphingobacteriia, Flavobacteriia) with most of the soil physicochemical properties.

Bensulfuron-Methyl, Terbutylazine, and 2,4-D Butylate Disturb Plant Growth and Resistance by Deteriorating Rhizosphere Environment and Plant Secondary Metabolism in Wheat Seedlings

Frequent and improper use of herbicides disrupts a plant's metabolism, causing oxidative stress that degrades crop quality. However, few studies have examined the inhibitory effects of herbicides on plant growth and defense mechanisms in terms of their impact on soil quality and crop rhizosphere. Therefore, the current study investigated the detrimental impacts of six typical and multilevel herbicides on the microbial community and signal molecules in the soil as well as on the levels of hormones and secondary metabolites in wheat seedlings. Interestingly, bensulfuron-methyl, terbutylazine (TBA), and 2,4-D butylate significantly induced oxidative damage while reducing the number of phytohormones (salicylic acid and jasmonic acid) and secondary metabolites (tricin, quercetin, and caffeic acid) in the roots and leaves compared with the controls, isoproturon, fenoxaprop-p-ethyl, and pretilachlor. At twice the recommended levels (2×), they also decreased the microbial α diversity and, in particular, the abundance of Gammaproteobacteria, Alphaproteobacteria, Actinobacteria, Bacteroidia, Verrucomicrobia, Bacilli, Acidimicrobiia, Deltaproteobacteria, and Gemmatimonadetes by disrupting the level of enzymes (e.g., urease and sucrase) and metabolites (indole-3-acetic acid, salicylic acid, apigenin, 4-hydroxybenzoic acid, DIMBOA, and melatonin) in the rhizosphere soil. Overall, significant exposure to herbicides may inhibit wheat growth by disturbing the microbial composition in the rhizosphere soil and the distribution of secondary metabolites in wheat seedlings.

Metabolomic Analysis on the Mechanism of Nanoselenium Biofortification Improving the Siraitia grosvenorii Nutritional and Health Value

Nanoselenium (nano-Se) foliar application is crucial for enhancing plant health. However, the mechanism by which nano-Se biofortification promotes the nutritional components of Siraitia grosvenorii remains unclear. In this study, nano-Se foliar application increased the carbohydrate and amino acid contents, including glucose (23.6%), fructose (39.7%), sucrose (60.6%), tryptophan (104.5%), glycine (85.9%), tyrosine (78.4%), phenylalanine (60.1%), glutamic acid (63.4%), and proline (52.5%). Nano-Se application enhanced apigenin (3.8 times), syringic acid (0.7 times), and 4-hydroxy-3,5-dimethoxycinnamic acid (1.4 times) of the phenylpropane biosynthesis pathways. Importantly, the SgCDS (31.1%), CYP-P450 (39.1%), and UGT (24.6%) were induced by nano-Se, which enhanced the mogroside V content (16.2%). Compared to the control, nano-Se treatment dramatically enhanced aromatic substances, including 2-butanone (51.9%), methylpropanal (146.3%), n-nonanal dimer (141.7%), pentanal (52.5%), and 2-pentanone (46.0%). In summary, nano-Se improves S. grosvenorii quality by increasing nutrients and volatile organic compounds and adjusting the phenylpropane pathway.

Potential of Meta-Omics to Provide Modern Microbial Indicators for Monitoring Soil Quality and Securing Food Production

Soils are fundamental resources for agricultural production and play an essential role in food security. They represent the keystone of the food value chain because they harbor a large fraction of biodiversity-the backbone of the regulation of ecosystem services and "soil health" maintenance. In the face of the numerous causes of soil degradation such as unsustainable soil management practices, pollution, waste disposal, or the increasing number of extreme weather events, it has become clear that (i) preserving the soil biodiversity is key to food security, and (ii) biodiversity-based solutions for environmental monitoring have to be developed. Within the soil biodiversity reservoir, microbial diversity including Archaea, Bacteria, Fungi and protists is essential for ecosystem functioning and resilience. Microbial communities are also sensitive to various environmental drivers and to management practices; as a result, they are ideal candidates for monitoring soil quality assessment. The emergence of meta-omics approaches based on recent advances in high-throughput sequencing and bioinformatics has remarkably improved our ability to characterize microbial diversity and its potential functions. This revolution has substantially filled the knowledge gap about soil microbial diversity regulation and ecology, but also provided new and robust indicators of agricultural soil quality. We reviewed how meta-omics approaches replaced traditional methods and allowed developing modern microbial indicators of the soil biological quality. Each meta-omics approach is described in its general principles, methodologies, specificities, strengths and drawbacks, and illustrated with concrete applications for soil monitoring. The development of metabarcoding approaches in the last 20 years has led to a collection of microbial indicators that are now operational and available for the farming sector. Our review shows that despite the recent huge advances, some meta-omics approaches (e.g., metatranscriptomics or meta-proteomics) still need developments to be operational for environmental bio-monitoring. As regards prospects, we outline the importance of building up repositories of soil quality indicators. These are essential for objective and robust diagnosis, to help actors and stakeholders improve soil management, with a view to or to contribute to combining the food and environmental quality of next-generation farming systems in the context of the agroecological transition.

Harnessing rhizobacteria to fulfil inter-linked nutrient dependency on soil and alleviate stresses in plants

Plant rhizo-microbiome comprises of complex microbial communities that colonizes at the interphase of plant roots and soil. Plant-growth-promoting rhizobacteria (PGPR) in the rhizosphere provides important ecosystem services ranging from release of essential nutrients for enhancing soil quality and improving plant health to imparting protection to plants against rising biotic and abiotic stresses. Hence, PGPR serve as restoring agents to rejuvenate soil health and mediate plant fitness in the facet of changing climate. Though, it is evident that nutrients availability in soil are managed through inter-linked mechanisms, how PGPR expediate these processes remain less recognized. Promising results of PGPR inoculation on plant growth are continually reported in controlled environmental conditions, however, their field application often fails due to competition with native microbiota and low colonization efficiency in roots. The development of highly efficient and smart bacterial synthetic communities by integrating bacterial ecological and genetic features provides better opportunities for successful inoculant formulations. This review provides an overview of the inter-play between nutrient availability and disease suppression governed by rhizobacteria in soil followed by the role of synthetic bacterial communities in developing efficient microbial inoculants. Moreover, an outlook on the beneficial activities of rhizobacteria in modifying soil characteristics to sustainably boost agroecosystem functioning is also provided.

Methane, Nitrous Oxide, and Ammonia Emissions on Dairy Farms in Spain with or without Bio-Activator Treatment

Intensive livestock farming substantially impacts the environment, especially farm and slurry management. Slurries are significant sources of greenhouse gases and ammonia. The present study was conducted in an intensive livestock production system in Galicia, Spain. The measurements were taken at six different farms in that region along with one control using common management practices in Galicia without the addition of a bio-activator. This study aimed to quantify GHGs and NH3 fluxes and their reductions during slurry treatment using a dynamic chamber through FTIR analysis and to examine the potential of usage of bio-activators for slurry management. In addition, gas concentrations were measured at the barns and compared with their slurry management and architectural volume to obtain influences on their management and the architectural volume of the barns. Additionally, the effects of using a bio-activator in the barns inside the facility areas were addressed. Moreover, qPCR analysis was conducted to understand the correlations between syncoms and methanogen populations when a bio-activator is added to the slurry with at least a 30% reduction in methanogenic populations. The outcomes suggest encouraging results for GHG reductions in the livestock sector, giving farmers future options for climate change mitigation among their standard practices.

Non-destructive Technologies for Plant Health Diagnosis

As global population grows rapidly, global food supply is increasingly under strain. This is exacerbated by climate change and declining soil quality due to years of excessive fertilizer, pesticide and agrichemical usage. Sustainable agricultural practices need to be put in place to minimize destruction to the environment while at the same time, optimize crop growth and productivity. To do so, farmers will need to embrace precision agriculture, using novel sensors and analytical tools to guide their farm management decisions. In recent years, non-destructive or minimally invasive sensors for plant metabolites have emerged as important analytical tools for monitoring of plant signaling pathways and plant response to external conditions that are indicative of overall plant health in real-time. This will allow precise application of fertilizers and synthetic plant growth regulators to maximize growth, as well as timely intervention to minimize yield loss from plant stress. In this mini-review, we highlight in vivo electrochemical sensors and optical nanosensors capable of detecting important endogenous metabolites within the plant, together with sensors that detect surface metabolites by probing the plant surface electrophysiology changes and air-borne volatile metabolites. The advantages and limitations of each kind of sensing tool are discussed with respect to their potential for application in high-tech future farms.

Cropping Patterns of Annual Crops: A Remote Sensing Review

Cropping patterns are defined as the sequence and spatial arrangement of annual crops on a piece of land. Knowledge of cropping patterns is crucial for crop production and land-use intensity. While cropping patterns are related to crop production and land use intensity, they are rarely reported in agricultural statistics, especially those relating to small farms in developing countries. Remote sensing has enabled mapping cropping patterns by monitoring crops’ spatial and temporal dynamics. In this paper, we reviewed remote sensing studies of single, sequential and intercropping patterns of annual crops practiced at local and regional scales. A total of 90 studies were selected from 753 publications based on their cropping pattern types and relevance to the scope of this review. The review found that despite the increase in single cropping pattern studies due to the Sentinel missions, studies on intercropping patterns are rare, suggesting that mapping intercropping is still challenging. More so, microwave remote sensing for mapping intercropping has not been fully explored. Given the complexities in mapping intercropping, our review highlights how less frequently used vegetation indices (VIs) that benefit from red-edge and SWIR spectral bands may improve intercropping mapping.

Soil Microbial Communities Altered by Titanium Ions in Different Agroecosystems of Pitaya and Grape

Titanium (Ti) is an element beneficial to plant growth. Application of titanium to roots or leaves at low concentrations can improve crop yield and performance. However, the effect of titanium ions on the bulk soil microbial community of planted crops remains unclear. This study aimed to explore the effects of titanium on soil bacterial and fungal communities. Field surveys were conducted to determine the effect of titanium ions on bulk soil microbial communities in pitaya and grape plantations of Panzhihua and Xichang areas, respectively. Full-length 16S rRNA and internal transcribed spacer (ITS) amplicon sequencing were performed using PacBio Sequel to further explore the composition and structure of soil microbiota. The application of titanium ions significantly altered the composition and structure of soil microbiota. Root irrigation with titanium ions in pitaya gardens reduced the diversity of soil fungi and bacteria. However, the decline in bacterial diversity was not statistically significant. Meanwhile, foliar spray of titanium ions on grapes greatly reduced the soil microbial diversity. The bulk soil microbiota had a core of conserved taxa, and titanium ions significantly altered their relative abundances. Furthermore, the application of titanium increased the interaction network of soil fungi and bacteria compared with the control group. Thus, titanium ions potentially improve the stability of the soil microbial community. IMPORTANCE Pitaya and grape are important cash crops in the Panzhihua and Xichang areas, respectively, where they are well adapted. Titanium is a plant growth-promoting element, but the interaction between titanium and soil microorganisms is poorly understood. Titanium ions are still not widely used for growing pitaya and grape in the two regions. Thus, we investigated the effects of titanium ions on soil microbial communities of the two fruit crops in these two regions. Microbial diversity decreased, and the community structure changed; however, the addition of titanium ions enhanced cooccurrence relationships and improved the stability of the community. This study provides a basis for the importance of titanium ion application in crop cultivation.

Effects of Low Temperature Stress on Source-Sink Organs in Wheat and Phosphorus Mitigation Strategies

The 21st century presents many challenges to mankind, including climate change, fast growing human population, and serious concerns over food security. Wheat is a leading cereal crop that largely fulfills the global food needs. Low temperature stress accompanied by nutrient-starved soils is badly disrupting the source-sink relationship of wheat, thus causing an acute decline in final yield and deteriorating the grain quality. This review paper aimed to understand how low temperature stress affects wheat source-sink organs (i.e., leaves, roots, and spikes) and how phosphorus application reliefs in alleviating its harmful consequences. Also, we discussed mitigation strategies to enhance wheat capacity to adapt to varying temperature extremes and made rational recommendations based on modern agronomic and breeding approaches. Therefore, this study is likely to establish a solid foundation for improving the tolerance to low temperature stress and to improve its phosphorus utilization efficiency in wheat.

The Fate of Foodborne Pathogens in Manure Treated Soil

The aim of this review was to provide an update on the complex relationship between manure application, altered pathogen levels and antibiotic resistance. This is necessary to protect health and improve the sustainability of this major farming practice in agricultural systems based on high levels of manure production. It is important to consider soil health in relation to environment and land management practices in the context of the soil microflora and the introduction of pathogens on the health of the soil microbiome. Viable pathogens in manure spread on agricultural land may be distributed by leaching, surface run-off, water source contamination and contaminated crop removal. Thus it is important to understand how multiple pathogens can persist in manures and on soil at farm-scale and how crops produced under these conditions could be a potential transfer route for zoonotic pathogens. The management of pathogen load within livestock manure is a potential mechanism for the reduction and prevention of outbreaks infection with Escherichia coli, Listeria Salmonella, and Campylobacter. The ability of Campylobacter, E. coli, Listeria and Salmonella to combat environmental stress coupled with their survival on food crops and vegetables post-harvest emphasizes the need for further study of these pathogens along with the emerging pathogen Providencia given its link to disease in the immunocompromised and its’ high levels of antibiotic resistance. The management of pathogen load within livestock manure has been widely recognized as a potential mechanism for the reduction and prevention of outbreaks infection but any studies undertaken should be considered as region specific due to the variable nature of the factors influencing pathogen content and survival in manures and soil. Mediocre soils that require nutrients could be one template for research on manure inputs and their influence on soil health and on pathogen survival on grassland and in food crops.

Bioinspired Nanomodification Strategies: Moving from Chemical-Based Agrosystems to Sustainable Agriculture

Agrochemicals have supported the development of the agricultural economy and national population over the past century. However, excessive applications of agrochemicals pose threats to the environment and human health. In the last decades, nanoparticles (NPs) have been a hot topic in many fields, especially in agriculture, because of their physicochemical properties. Nevertheless, the prevalent methods for fabricating NPs are uneconomical and involve toxic reagents, hindering their extensive applications in the agricultural sector. In contrast, inspired by biological exemplifications from microbes and plants, their extract and biomass can act as a reducing and capping agent to form NPs without any toxic reagents. NPs synthesized through these bioinspired routes are cost-effective, ecofriendly, and high performing. With the development of nanotechnology, biosynthetic NPs (bioNPs) have been proven to be a substitute strategy for agrochemicals and traditional NPs in heavy-metal remediation of soil, promotion of plant growth, and management of plant disease with less toxicity and higher performance. Therefore, bioinspired synthesis of NPs will be an inevitable trend for sustainable development in agricultural fields. This critical review will demonstrate the bioinspired synthesis of NPs and discuss the influence of bioNPs on agricultural soil, crop growth, and crop diseases compared to chemical NPs or agrochemicals.

Impact of Anthropic Activities on Soil Quality under Different Land Uses

Anthropization often leads to land use transformation, causing deep changes to soil properties and its quality. Land use change could be an environmental and socioeconomic problem, as it impacts soil quality and ecosystem services. There is an urgent need to understand the pressures affecting soil quality. The aim of the work is to quantify the impact of different land uses on soil abiotic and biotic properties and on its quality. To achieve the aims, soils from different land uses (forest, urban and agricultural) were collected in the surroundings of Naples and analyzed for pH, water content, contents of C and N, C/N ratio and total and available concentrations of Cu, Ni and Pb, microbial and fungal biomasses, basal respiration and metabolic quotient. Then, a soil quality index (SQI) was calculated for each land use. The results showed that soil abiotic and biotic properties of the agricultural sites differed from those of forest and urban sites. At agricultural sites, microbial abundances decreased due to low amount of C and N and to high amount of Cu and Pb. This caused low use efficiency of energetic substrates and a reduced soil quality of agricultural sites as compared to forest and urban sites.

A Primer to Traditional Knowledge Protection in India: The Road Ahead

As India moves ahead in the twenty-first century to be a global player, it must take a balanced and inclusive approach. Marginalized and vulnerable tribal communities make approximately 10% of the massive population, playing a dynamic role in this regard. Their ancestral knowledge can be explored to inculcate the ethos in multiple disciplines. This would most certainly bring the much-needed balance in achieving the United Nations Sustainable Development Goals. Where the world is fast losing its natural resources, promoting traditional knowledge (TK) could become an initiative for its reconstruction in post-COVID 19 scenarios. Apart from reinstating the rights of these indigenous communities, this step would also facilitate the economic benefit of the country through the incorporation of TK in the realm of Intellectual Property. This would be a masterstroke for India to lead the Global South. This would also bring in a balance with the Global North, where significant developments have already taken place, in this regard. TK per se should not necessarily be protectable unless based on scientific evidence.

Metagenomic profiling of rhizosphere microbial community structure and diversity associated with maize plant as affected by cropping systems

Soil microbial diversity is believed to be vital in maintaining soil quality and health. Limited knowledge exists on the impact of cropping systems (mono-cropping and crop rotation) on the diversity of the whole soil microbiome. In this study, we investigated the effects of two cropping systems, namely crop rotation and mono-cropping, on the community structure and diversity of rhizosphere microbiome in the rhizosphere and bulk soil associated with maize plant using shotgun metagenomics. Whole DNA was extracted from bulk, and rhizosphere soils associated with maize plant from the mono-cropping (LT and LTc) and crop rotation (VD and VDc) sites, respectively, and sequenced employing shotgun metagenomics. The results obtained via the Subsystem database showed 23 bacteria, 2 fungi, and 3 archaea most abundant phyla. The major bacterial phyla are Firmicutes, Bacteroidetes, Actinobacteria, Proteobacteria, Gemmatimonadetes, Acidobacteria, Cyanobacteria, Spirochaetes, Aquificae, Verrucomicrobia, Chloroflexi, Planctomycetes, and Chlorobi. The major fungi phyla observed were Ascomycota and Basidiomycota, while the dominant archaea phyla are Euryarchaeota, Thaumarchaeota, and Crenarchaeota. Our diversity assessment showed that the rhizosphere microbial community was more abundant in the samples from the rotational crop site following VD>VDc>LT>LTc. Alpha diversity showed that there was no significant difference (P>0.05) in the soil microbial communities (P>0.05), while better diversity indicated that a significant difference (P = 0.01) occurred. Taken together, crop rotational practice was found to positively influence the rhizosphere microbial community associated with the maize plant.

National Crop Mapping Using Sentinel-1 Time Series: A Knowledge-Based Descriptive Algorithm

National-level mapping of crop types is important to monitor food security, understand environmental conditions, inform optimal use of the landscape, and contribute to agricultural policy. Countries or economic regions currently and increasingly use satellite sensor data for classifying crops over large areas. However, most methods have been based on machine learning algorithms, with these often requiring large training datasets that are not always available and may be costly to produce or collect. Focusing on Wales (United Kingdom), the research demonstrates how the knowledge that the agricultural community has gathered together over past decades can be used to develop algorithms for mapping different crop types. Specifically, we aimed to develop an alternative method for consistent and accurate crop type mapping where cloud cover is quite persistent and without the need for extensive in situ/ground datasets. The classification approach is parcel-based and informed by concomitant analysis of knowledge-based crop growth stages and Sentinel-1 C-band SAR time series. For 2018, crop type classifications were generated nationally for Wales, with regional overall accuracies ranging between 85.8% and 90.6%. The method was particularly successful in distinguishing barley from wheat, which is a major source of error in other crop products available for Wales. This study demonstrates that crops can be accurately identified and mapped across a large area (i.e., Wales) using Sentinel-1 C-band data and by capitalizing on knowledge of crop growth stages. The developed algorithm is flexible and, compared to the other methods that allow crop mapping in Wales, the approach provided more consistent discrimination and lower variability in accuracies between classes and regions.

Temporal Variations of Soil Organic Carbon and pH at Landscape Scale and the Implications for Cropping Intensity in Rice-Based Cropping Systems

Landscape scale assessment of temporal variations in soil organic carbon (SOC) contents and soil pH and the implications for long-term agricultural sustainability was determined using legacy datasets collected over two periods separated by 20 years: the 1990s and 2010s. Soil data on SOC and pH were categorized according to the prevailing land types (based on inundation as highland (HL), medium highland (MHL), and medium lowland (MLL)), and physiographic types (i.e., Himalayan Piedmont plain, Tista Floodplain and Barind tract/Terrace) to determine which variable or combination of variables was more influential in spatial and temporal changes of these properties. SOC contents in the physiographic types were generally found to be low, varying between 8 to 12 g/kg. While, SOC contents were significantly higher in MHL and MLL compared with HL that experienced less inundation. The change in SOC contents over 20 years was significant with a 14.5% increase of SOC. There was a greater influence of land type compared with physiography on SOC contents over time. Inundation land types and associated cropping intensity were considered likely to influence SOC of soils under rice-based cropping systems. Furthermore, the levels of soil pH decreased by 0.5 units over 20 years with an approximately 50% increase in soils within a pH category of 4.6–5.5. The majority of soil pH results shift from slightly acidic to strongly acidic in the intervening 20-year period between samplings. Soil acidification is potentially a combination of inefficient and excess use of ammonium-based fertilizers with higher application rates and low input from residues. We conclude that acidification may continue with more intensive land use. However, trends in SOC contents over time under certain combinations of physiography and land type either increased slightly or showed a significant loss and in the latter, specifically, the role of land management is not clear. The legacy datasets would be useful for monitoring spatial and temporal soil quality trends at a regional scale, but has limited capacity to capture field level variations in soil properties as data on smallholder cropping practice and management were not collected. Therefore, future research examining the role of management in SOC and pH dynamics at the field-scale would guide the use of fertilizers, crop residue management, and amelioration of acidic soil, to improve the sustainability of rice-based cropping systems in Bangladesh.