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Wei H, Zhong Z, Li Z, Zhang Y, Stukenbrock EH, Tang B, Yang N, Baroncelli R, Peng L, Liu Z, He X, Yang Y, Yuan Z. Loss of the accessory chromosome converts a pathogenic tree-root fungus into a mutualistic endophyte. Plant Commun 2024; 5:100672. [PMID: 37563834 PMCID: PMC10811371 DOI: 10.1016/j.xplc.2023.100672] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/17/2023] [Revised: 06/01/2023] [Accepted: 08/04/2023] [Indexed: 08/12/2023]
Abstract
Some fungal accessory chromosomes (ACs) may contribute to virulence in plants. However, the mechanisms by which ACs determine specific traits associated with lifestyle transitions along a symbiotic continuum are not clear. Here we delineated the genetic divergence in two sympatric but considerably variable isolates (16B and 16W) of the poplar-associated fungus Stagonosporopsis rhizophilae. We identified a ∼0.6-Mb horizontally acquired AC in 16W that resulted in a mildly parasitic lifestyle in plants. Complete deletion of the AC (Δ16W) significantly altered the fungal phenotype. Specifically, Δ16W was morphologically more similar to 16B, showed enhanced melanization, and established beneficial interactions with poplar plants, thereby acting as a dark septate endophyte. RNA sequencing (RNA-seq) analysis showed that AC loss induced the upregulation of genes related to root colonization and biosynthesis of indole acetic acid and melanin. We observed that the AC maintained a more open status of chromatin across the genome, indicating an impressive remodeling of cis-regulatory elements upon AC loss, which potentially enhanced symbiotic effectiveness. We demonstrated that the symbiotic capacities were non-host-specific through comparable experiments on Triticum- and Arabidopsis-fungus associations. Furthermore, the three isolates generated symbiotic interactions with a nonvascular liverwort. In summary, our study suggests that the AC is a suppressor of symbiosis and provides insights into the underlying mechanisms of mutualism with vascular plants in the absence of traits encoded by the AC. We speculate that AC-situated effectors and other potential secreted molecules may have evolved to specifically target vascular plants and promote mild virulence.
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Affiliation(s)
- Huanshen Wei
- State Key Laboratory of Tree Genetics and Breeding, Chinese Academy of Forestry, Beijing 100091, China; Research Institute of Subtropical Forestry, Chinese Academy of Forestry, Hangzhou 311400, China
| | - Zhenhui Zhong
- State Key Laboratory of Ecological Pest Control for Fujian and Taiwan Crops, Fujian Agriculture and Forestry University, Fuzhou 350002, China
| | - Zhongfeng Li
- State Key Laboratory of Tree Genetics and Breeding, Chinese Academy of Forestry, Beijing 100091, China; Research Institute of Subtropical Forestry, Chinese Academy of Forestry, Hangzhou 311400, China
| | - Yuwei Zhang
- State Key Laboratory of Tree Genetics and Breeding, Chinese Academy of Forestry, Beijing 100091, China; Research Institute of Subtropical Forestry, Chinese Academy of Forestry, Hangzhou 311400, China
| | - Eva H Stukenbrock
- Environmental Genomics, Christian-Albrechts University, 24118 Kiel, Germany; Max Planck Fellow Group Environmental Genomics, Max Planck Institute for Evolutionary Biology, 24306 Plön, Germany.
| | - Boping Tang
- Jiangsu Key Laboratory for Bioresources of Saline Soils, School of Wetlands, Yancheng Teachers University, Yancheng 224002, China
| | - Ningning Yang
- State Key Laboratory of Tree Genetics and Breeding, Chinese Academy of Forestry, Beijing 100091, China; Research Institute of Subtropical Forestry, Chinese Academy of Forestry, Hangzhou 311400, China
| | - Riccardo Baroncelli
- Department of Agricultural and Food Sciences (DISTAL), University of Bologna, 40127 Bologna, Italy
| | - Long Peng
- State Key Laboratory of Tree Genetics and Breeding, Chinese Academy of Forestry, Beijing 100091, China; Research Institute of Subtropical Forestry, Chinese Academy of Forestry, Hangzhou 311400, China
| | - Zhuo Liu
- State Key Laboratory of Tree Genetics and Breeding, Chinese Academy of Forestry, Beijing 100091, China; Research Institute of Subtropical Forestry, Chinese Academy of Forestry, Hangzhou 311400, China
| | - Xinghua He
- State Key Laboratory of Tree Genetics and Breeding, Chinese Academy of Forestry, Beijing 100091, China; Research Institute of Subtropical Forestry, Chinese Academy of Forestry, Hangzhou 311400, China
| | - Yuzhan Yang
- State Key Laboratory of Tree Genetics and Breeding, Chinese Academy of Forestry, Beijing 100091, China; Research Institute of Subtropical Forestry, Chinese Academy of Forestry, Hangzhou 311400, China
| | - Zhilin Yuan
- State Key Laboratory of Tree Genetics and Breeding, Chinese Academy of Forestry, Beijing 100091, China; Research Institute of Subtropical Forestry, Chinese Academy of Forestry, Hangzhou 311400, China.
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Gaber DA, Berthelot C, Blaudez D, Kovács GM, Franken P. Impact of dark septate endophytes on salt stress alleviation of tomato plants. Front Microbiol 2023; 14:1124879. [PMID: 37415811 PMCID: PMC10320394 DOI: 10.3389/fmicb.2023.1124879] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/15/2022] [Accepted: 05/19/2023] [Indexed: 07/08/2023] Open
Abstract
Fungal endophytes can improve plant tolerance to abiotic stress conditions. Dark septate endophytes (DSEs) belong to phylogenetically non-related groups of root colonizing fungi among the Ascomycota with high melanin-producing activities. They can be isolated from roots of more than 600 plant species in diverse ecosystems. Still the knowledge about their interaction with host plants and their contribution to stress alleviation is limited. The current work aimed to test the abilities of three DSEs (Periconia macrospinosa, Cadophora sp., Leptodontidium sp.) to alleviate moderate and high salt stress in tomato plants. By including an albino mutant, the role of melanin for the interaction with plants and salt stress alleviation could also be tested. P. macrospinosa and Cadophora sp. improved shoot and root growth 6 weeks after inoculation under moderate and high salt stress conditions. No matter how much salt stress was applied, macroelement (P, N, and C) contents were unaffected by DSE inoculation. The four tested DSE strains successfully colonized the roots of tomato, but the colonization level was clearly reduced in the albino mutant of Leptodontidium sp. Any difference in the effects on plant growth between the Leptodontidium sp. wild type strain and the albino mutant could, however, not be observed. These results show that particular DSEs are able to increase salt tolerance as they promote plant growth specifically under stress condition. Increased plant biomasses combined with stable nutrient contents resulted in higher P uptake in shoots of inoculated plants at moderate and high salt conditions and higher N uptake in the absence of salt stress in all inoculated plants, in P. macrospinosa-inoculated plants at moderate salt condition and in all inoculated plants except the albino mutants at high salt condition. In summary, melanin in DSEs seems to be important for the colonization process, but does not influence growth, nutrient uptake or salt tolerance of plants.
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Affiliation(s)
- Dalia A. Gaber
- Leibniz-Institute of Vegetable and Ornamental Crops, Grossbeeren, Germany
- Erfurt Research Centre for Horticultural Crops, University of Applied Sciences, Erfurt, Germany
- Department of Botany and Microbiology, Faculty of Science, Assiut University, Assiut, Egypt
| | - Charlotte Berthelot
- Université de Lorraine, CNRS, LIEC, Nancy, France
- CTIFL, Centre de Carquefou, Carquefou, France
| | | | - Gábor M. Kovács
- Department of Plant Anatomy, Institute of Biology, Eötvös Loránd University, Budapest, Hungary
- Centre for Agricultural Research, Plant Protection Institute, Budapest, Hungary
| | - Philipp Franken
- Leibniz-Institute of Vegetable and Ornamental Crops, Grossbeeren, Germany
- Erfurt Research Centre for Horticultural Crops, University of Applied Sciences, Erfurt, Germany
- Institute of Microbiology, Friedrich Schiller University Jena, Jena, Germany
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Mafune KK, Vogt DJ, Vogt KA, Cline EC, Godfrey BJ, Bunn RA, Meade AJS. Old-growth Acer macrophyllum trees host a unique suite of arbuscular mycorrhizal fungi and other root-associated fungal taxa in their canopy soil environment. Mycologia 2023:1-14. [PMID: 37262388 DOI: 10.1080/00275514.2023.2206930] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/21/2022] [Accepted: 04/14/2023] [Indexed: 06/03/2023]
Abstract
Canopy soils occur on tree branches throughout the temperate rainforests of the Pacific Northwest Coast and are recognized as a defining characteristic of these ecosystems. Certain tree species extend adventitious roots into these canopy soil environments. Yet, research on adventitious root-associated fungi remains limited. Our study used microscopy to compare fungal colonization intensity between canopy and forest floor roots of old-growth bigleaf maple (Acer macrophyllum) trees. Subsequently, two high-throughput sequencing platforms were used to explore the spatial and seasonal variation of root-associated fungi between the two soil environments over one year. We found that canopy and forest floor roots had similar colonization intensity and were associating with a diversity of arbuscular mycorrhizal fungi and other potential symbionts, many of which were resolved to species level. Soil environment and seasonality affected root-associated fungal community composition, and several fungal species were indicative of the canopy soil environment. In Washington State's (USA) temperate old-growth rainforests, these canopy soil environments host a unique suite of root-associated fungi. The presence of arbuscular mycorrhizae provides further evidence that adventitious roots form fungal associations to exploit canopy soils for resources, and there may be novel relationships forming with other fungi. These soils may be providing a redundancy compartment (i.e., "nutrient reserve"), imparting a resiliency to disturbances for certain old-growth trees.
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Affiliation(s)
- Korena K Mafune
- Department of Civil and Environmental Engineering, University of Washington, Seattle, Washington, 98105
- School of Environmental and Forest Sciences, University of Washington, Seattle, Washington, 98105
| | - Daniel J Vogt
- School of Environmental and Forest Sciences, University of Washington, Seattle, Washington, 98105
| | - Kristiina A Vogt
- School of Environmental and Forest Sciences, University of Washington, Seattle, Washington, 98105
| | - E C Cline
- Division of Sciences and Mathematics, University of Washington, Tacoma, Washington, 98402
| | - Bruce J Godfrey
- Department of Civil and Environmental Engineering, University of Washington, Seattle, Washington, 98105
| | - Rebecca A Bunn
- Department of Environmental Sciences, Western Washington University, Bellingham, Washington, 98225
| | - Alec J S Meade
- School of Environmental and Forest Sciences, University of Washington, Seattle, Washington, 98105
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Chen S, Zhang G, Liang X, Wang L, Li Z, He Y, Li B, Zhan F. A Dark Septate Endophyte Improves Cadmium Tolerance of Maize by Modifying Root Morphology and Promoting Cadmium Binding to the Cell Wall and Phosphate. J Fungi (Basel) 2023; 9:jof9050531. [PMID: 37233243 DOI: 10.3390/jof9050531] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/31/2023] [Revised: 04/21/2023] [Accepted: 04/27/2023] [Indexed: 05/27/2023] Open
Abstract
Dark septate endophytes (DSEs) can improve the performance of host plants grown in heavy metal-polluted soils, but the mechanism is still unclear. A sand culture experiment was performed to investigate the effects of a DSE strain (Exophiala pisciphila) on maize growth, root morphology, and cadmium (Cd) uptake under Cd stress at different concentrations (0, 5, 10, and 20 mg·kg-1). The results indicated that the DSE significantly improved the Cd tolerance of maize, causing increases in biomass, plant height, and root morphology (length, tips, branch, and crossing number); enhancing the Cd retention in roots with a decrease in the transfer coefficient of Cd in maize plants; and increasing the Cd proportion in the cell wall by 16.0-25.6%. In addition, DSE significantly changed the chemical forms of Cd in maize roots, resulting in decreases in the proportions of pectates and protein-integrated Cd by 15.6-32.4%, but an increase in the proportion of insoluble phosphate Cd by 33.3-83.3%. The correlation analysis revealed a significantly positive relationship between the root morphology and the proportions of insoluble phosphate Cd and Cd in the cell wall. Therefore, the DSE improved the Cd tolerance of plants both by modifying root morphology, and by promoting Cd binding to the cell walls and forming an insoluble phosphate Cd of lower activity. These results of this study provide comprehensive evidence for the mechanisms by which DSE colonization enhances Cd tolerance in maize in root morphology with Cd subcellular distribution and chemical forms.
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Affiliation(s)
- Si Chen
- College of Resources and Environment, Yunnan Agricultural University, Kunming 650201, China
| | - Guangqun Zhang
- College of Resources and Environment, Yunnan Agricultural University, Kunming 650201, China
| | - Xinran Liang
- College of Resources and Environment, Yunnan Agricultural University, Kunming 650201, China
| | - Lei Wang
- College of Resources and Environment, Yunnan Agricultural University, Kunming 650201, China
| | - Zuran Li
- College of Horticulture and Landscape, Yunnan Agricultural University, Kunming 650201, China
| | - Yongmei He
- College of Resources and Environment, Yunnan Agricultural University, Kunming 650201, China
| | - Bo Li
- College of Resources and Environment, Yunnan Agricultural University, Kunming 650201, China
| | - Fangdong Zhan
- College of Resources and Environment, Yunnan Agricultural University, Kunming 650201, China
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Yang Z, Yuan L, Zhu H, Jiang J, Yang H, Li L. Small RNA profiling reveals the involvement of microRNA-mediated gene regulation in response to symbiosis in raspberry. Front Microbiol 2022; 13:1082494. [PMID: 36620006 PMCID: PMC9810812 DOI: 10.3389/fmicb.2022.1082494] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/28/2022] [Accepted: 11/30/2022] [Indexed: 12/24/2022] Open
Abstract
Dark septate endophytes (DSEs) can form reciprocal symbioses with most terrestrial plants, providing them with mineral nutrients in exchange for photosynthetic products. Although the mechanism of plant-DSEs is well understood at the transcriptional level, little is known about their post-transcriptional regulation, and microRNAs (miRNAs) for the symbiotic process of DSE infestation of raspberry have not been identified. In this study, we comprehensively identified the miRNAs of DSE-infested raspberry symbiosis using Illumina sequencing. A total of 361 known miRNAs and 95 novel miRNAs were identified in the roots. Similar to other dicotyledons, most of the identified raspberry miRNAs were 21 nt in length. Thirty-seven miRNAs were differentially expressed during colonization after inoculation with Phialocephala fortinii F5, suggesting a possible role for these miRNAs in the symbiotic process. Notably, two miRNAs (miR171h and miR396) previously reported to be responsive to symbiotic processes in alfalfa also had altered expression during raspberry symbiosis. Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) analyses suggests that miRNAs are mainly involved in regulatory mechanisms, such as biological processes, cellular metabolic processes, biosynthesis of secondary metabolites, plant-pathogen interactions, and phytohormone signaling pathways. This study revealed the potential conservation of miRNA-mediated post-transcriptional regulation in symbiotic processes among plants and provides some novel miRNAs for understanding the regulatory mechanisms of DSE-raspberry symbiosis.
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Affiliation(s)
- Zhiyu Yang
- Key Laboratory of Saline-alkali Vegetation Ecology Restoration (Northeast Forestry University), Ministry of Education, Harbin, China,College of Life Science, Northeast Forestry University, Harbin, China
| | - Lianmei Yuan
- Key Laboratory of Saline-alkali Vegetation Ecology Restoration (Northeast Forestry University), Ministry of Education, Harbin, China,College of Life Science, Northeast Forestry University, Harbin, China
| | - Haifeng Zhu
- Key Laboratory of Saline-alkali Vegetation Ecology Restoration (Northeast Forestry University), Ministry of Education, Harbin, China,College of Life Science, Northeast Forestry University, Harbin, China
| | - Jing Jiang
- Key Laboratory of Saline-alkali Vegetation Ecology Restoration (Northeast Forestry University), Ministry of Education, Harbin, China,College of Life Science, Northeast Forestry University, Harbin, China
| | - Hongyi Yang
- Key Laboratory of Saline-alkali Vegetation Ecology Restoration (Northeast Forestry University), Ministry of Education, Harbin, China,College of Life Science, Northeast Forestry University, Harbin, China,*Correspondence: Hongyi Yang,
| | - Lili Li
- Institute of Forestry Science of Heilongjiang Province, Harbin, China,Lili Li,
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Mellado-Mansilla D, Testo W, Sundue MA, Zotz G, Kreft H, Coiro M, Kessler M. The relationship between chlorophyllous spores and mycorrhizal associations in ferns: evidence from an evolutionary approach. Am J Bot 2022; 109:2068-2081. [PMID: 36310350 DOI: 10.1002/ajb2.16094] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/24/2022] [Revised: 10/17/2022] [Accepted: 10/17/2022] [Indexed: 06/16/2023]
Abstract
PREMISE Approximately 14% of all fern species have physiologically active chlorophyllous spores that are much more short-lived than the more common and dormant achlorophyllous spores. Most chlorophyllous-spored species (70%) are epiphytes and account for almost 37% of all epiphytic ferns. Chlorophyllous-spored ferns are also overrepresented among fern species in habitats with waterlogged soils, of which nearly 60% have chlorophyllous spores. Ferns in these disparate habitat types also have a low incidence of mycorrhizal associations. We therefore hypothesized that autotrophic chlorophyllous spores represent an adaptation of ferns to habitats with scarce mycorrhizal associations. METHODS We evaluated the coevolution of chlorophyllous spores and mycorrhizal associations in ferns and their relation to habitat type using phylogenetic comparative methods. RESULTS Although we did not find support for the coevolution of spore type and mycorrhizal associations, we did find that chlorophyllous spores and the absence of mycorrhizal associations have coevolved with epiphytic and waterlogged habitats. Transition rates to epiphytic and waterlogged habitats were significantly higher in species with chlorophyllous spores compared to achlorophyllous lineages. CONCLUSIONS Spore type and mycorrhizal associations appear to play important roles in the radiation of ferns into different habitat types. Future work should focus on clarifying the functional significance of these associations.
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Affiliation(s)
- Daniela Mellado-Mansilla
- Department of Biodiversity, Macroecology and Biogeography, Faculty of Forest Sciences and Forest Ecology, University of Göttingen, Göttingen, Germany
- Institute for Biology and Environmental Sciences, AG Functional Ecology, Carl von Ossietzky University of Oldenburg, Oldenburg, Germany
| | - Weston Testo
- Department of Biological and Environmental Sciences, University of Gothenburg, Göteborg, Sweden
- Gothenburg Global Biodiversity Centre, Göteborg, Sweden
| | - Michael A Sundue
- The Pringle Herbarium, Department of Plant Biology, University of Vermont, Burlington, VT, USA
| | - Gerhard Zotz
- Institute for Biology and Environmental Sciences, AG Functional Ecology, Carl von Ossietzky University of Oldenburg, Oldenburg, Germany
- Smithsonian Tropical Research Institute, Panama
| | - Holger Kreft
- Department of Biodiversity, Macroecology and Biogeography, Faculty of Forest Sciences and Forest Ecology, University of Göttingen, Göttingen, Germany
- Centre of Biodiversity and Sustainable Land Use (CBL), University of Göttingen, Göttingen, Germany
| | - Mario Coiro
- Department of Paleontology, University of Vienna, Vienna, Austria
- Ronin Institute for Independent Scholarship, Montclair, NJ, USA
| | - Michael Kessler
- Department of Systematic and Evolutionary Botany, University of Zürich, Zürich, Switzerland
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Silva PST, Cassiolato AMR, Galindo FS, Jalal A, Nogueira TAR, Oliveira CEDS, Filho MCMT. Azospirillum brasilense and Zinc Rates Effect on Fungal Root Colonization and Yield of Wheat-Maize in Tropical Savannah Conditions. Plants (Basel) 2022; 11:3154. [PMID: 36432883 PMCID: PMC9694232 DOI: 10.3390/plants11223154] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/30/2022] [Revised: 11/04/2022] [Accepted: 11/14/2022] [Indexed: 06/16/2023]
Abstract
A successful microbial inoculant can increase root colonization and establish a positive interaction with native microorganisms to promote growth and productivity of cereal crops. Zinc (Zn) is an intensively reported deficient nutrient for maize and wheat production in Brazilian Cerrado. It can be sustainably managed by inoculation with plant growth-promoting bacteria and their symbiotic association with other microorganisms such as arbuscular mycorrhizal fungi (AMF) and dark septate endophytes (DSE). The objective of this study was to evaluate the effect of Azospirillum brasilense inoculation and residual Zn rates on root colonization and grain yield of maize and wheat in succession under the tropical conditions of Brazil. These experiments were conducted in a randomized block design with four replications and arranged in a 5 × 2 factorial scheme. The treatments consisted of five Zn rates (0, 2, 4, 6 and 8 kg ha-1) applied from zinc sulfate in maize and residual on wheat and without and with seed inoculation of A. brasilense. The results indicated that root colonization by AMF and DSE in maize-wheat cropping system were significantly increased with interaction of Zn rates and inoculation treatments. Inoculation with A. brasilense at residual Zn rates of 4 kg ha-1 increased root colonization by AMF under maize cultivation. Similarly, inoculation with A. brasilense at residual Zn rates of 2 and 4 kg ha-1 reduced root colonization by DSE under wheat in succession. The leaf chlorophyll index and leaf Zn concentration were increased with inoculation of the A. brasilense and residual Zn rates. The inoculation did not influence AMF spore production and CO2-C in both crops. The grain yield and yield components of maize-wheat were increased with the inoculation of A. brasilense under residual Zn rates of 3 to 4 kg ha-1 in tropical savannah conditions. Inoculation with A. brasilense under residual Zn rates up to 4 kg ha-1 promoted root colonization by AMF and DSE in the maize cropping season. While the inoculation with A. brasilense under 2 and 4 kg ha-1 residual Zn rates reduced root colonization by AMF and DSE in the wheat cropping season. Therefore, inoculation with A. brasilense in combination with Zn fertilization could consider a sustainable approach to increase the yield and performance of the maize-wheat cropping system in the tropical savannah conditions of Brazil.
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Affiliation(s)
- Philippe Solano Toledo Silva
- Faculty of Agricultural and Veterinary Sciences, São Paulo State University (UNESP), Via de Acesso Prof. Paulo Donato Castellane s/n, Jaboticabal 14884-900, Brazil
| | - Ana Maria Rodrigues Cassiolato
- Department of Plant Health, Rural Engineering, and Soils, São Paulo State University (UNESP), Av. Brasil, 56—Centro, Ilha Solteira 15385-000, Brazil
| | - Fernando Shintate Galindo
- Center for Nuclear Energy in Agriculture, University of São Paulo (USP), Av. Centenário, 303—São Dimas, Piracicaba 13416-000, Brazil
| | - Arshad Jalal
- Department of Plant Health, Rural Engineering, and Soils, São Paulo State University (UNESP), Av. Brasil, 56—Centro, Ilha Solteira 15385-000, Brazil
| | - Thiago Assis Rodrigues Nogueira
- Department of Plant Health, Rural Engineering, and Soils, São Paulo State University (UNESP), Av. Brasil, 56—Centro, Ilha Solteira 15385-000, Brazil
| | - Carlos Eduardo da Silva Oliveira
- Department of Plant Health, Rural Engineering, and Soils, São Paulo State University (UNESP), Av. Brasil, 56—Centro, Ilha Solteira 15385-000, Brazil
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Guzmán-Cornejo L, Pacheco L, Camargo-Ricalde SL, González-Chávez MDC. Endorhizal fungal symbiosis in lycophytes and metal(loid)-accumulating ferns growing naturally in mine wastes in Mexico. Int J Phytoremediation 2022; 25:538-549. [PMID: 35867895 DOI: 10.1080/15226514.2022.2092060] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/15/2023]
Abstract
Ferns and lycophytes are pioneer plants that can be useful for revegetation. Their natural distribution and interaction with soil fungal endophytes can increase plant fitness but have received little attention. This study aimed to identify these plant species in mine wastes, and determine colonization by arbuscular mycorrhizal fungi (AMF) and dark septate endophytes (DSE). The pseudo-total and diethylenetriamine pentaacetic acid (DTPA)-extractable rhizosphere concentrations of As, Cu, Cd, Pb, and Zn, bioavailability index (BI), and bioconcentration factor (BCF) were analyzed. Six ferns and one lycophyte were identified. Arsenic and metal concentrations were high, which were plant and site-dependent. All species showed hyperaccumulation of As in fronds, especially Argyrochosma formosa (2,883) and Notholaena affinis (2,160) had the highest concentrations (mg kg-1). All plants were colonized by AMF (3%-24%) and DSE (2%-33%). Astrolepis sinuata and Myriopteris notholaenoides had the maximum colonization by AMF and A. formosa by DSE. This study identifies for the first time five ferns and one lycophyte species on mine wastes, their As hyperaccumulation capacity and the simultaneous fungal colonization by AMF and DSE. These are relevant plant traits for phytoremediation. However, fungal identification and the role colonization by AMF and DSE requires full analysis.
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Affiliation(s)
- Laura Guzmán-Cornejo
- Doctorado en Ciencias Biológicas y de la Salud, Universidad Autónoma Metropolitana, Ciudad de México, México
| | - Leticia Pacheco
- Departamento de Biología, Universidad Autónoma Metropolitana, Iztapalapa, Ciudad de México, México
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He C, Han T, Tan L, Li X. Effects of Dark Septate Endophytes on the Performance and Soil Microbia of Lycium ruthenicum Under Drought Stress. Front Plant Sci 2022; 13:898378. [PMID: 35720577 PMCID: PMC9201775 DOI: 10.3389/fpls.2022.898378] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 03/17/2022] [Accepted: 05/03/2022] [Indexed: 06/15/2023]
Abstract
In the current study, we explored the effects of dark septate endophytes (DSE) (Neocamarosporium phragmitis, Alternaria chlamydospore, and Microascus alveolaris) on the performance and rhizosphere soil microbial composition of Lycium ruthenicum Murr under drought stress. Differences in plant growth and physiological indexes, soil parameters, and microbial composition under different treatments were studied. Three DSE species could form good symbiotic relationships with L. ruthenicum plants, and the symbionts depended on DSE species and water availability. Inoculation of DSE had the greatest benefit on host plants under drought conditions. In particular, N. phragmitis and A. chlamydospore had a significant positive influence on the biomass, morphological and physiological indexes of host plants. Additionally, the content of arbuscular mycorrhiza (AM) fungi, gram-negative bacteria, and actinomycetes in the soil was significantly elevated after DSE inoculation in the absence of water. Based on a variance decomposition analysis, DSE was the most important factor affecting the growth and physiological parameters of host plants, and DSE inoculation combined with water conditions significantly affected the contents of soil microbial communities. Structural equation model (SEM) analysis showed that the positive effects of DSE on L. ruthenicum varied with DSE species and plant parameters under different water conditions. These results are helpful to understand the ecological function of DSE and its potential application in the cultivation of L. ruthenicum plants in drylands.
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Affiliation(s)
- Chao He
- Institute of Medicinal Plant Development, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing, China
| | - Tingting Han
- Institute of Medicinal Plant Development, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing, China
| | - Ling Tan
- Xiyuan Hospital, Chinese Academy of Traditional Chinese Medicine, Beijing, China
| | - Xianen Li
- Institute of Medicinal Plant Development, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing, China
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Romero-Jiménez MJ, Rudgers JA, Jumpponen A, Herrera J, Hutchinson M, Kuske C, Dunbar J, Knapp DG, Kovács GM, Porras-Alfaro A. Darksidea phi, sp. nov., a dark septate root-associated fungus in foundation grasses in North American Great Plains. Mycologia 2022; 114:254-269. [PMID: 35394886 DOI: 10.1080/00275514.2022.2031780] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
Abstract
Darksidea is a common genus of dark septate fungi-a group of ascomycetes in semiarid regions. A survey reported D. alpha and a distinct Darksidea lineage as abundant root-associated fungi of foundational grasses in North America. Fungi were isolated, and metabarcode data were obtained from sequencing of fungal communities of grass roots in the United States. During a comprehensive investigation of the Darksidea lineage, we carried out polyphasic taxonomy, genomic characterization, and identification of host associations, geographic distribution, and environmental factors that correlate with its abundance. For molecular phylogenetic studies, seven loci were sequenced. Isolates of the distinct Darksidea had variable colony morphology. No sexual reproductive structures were detected, but chlamydospores were frequently observed. The complete genome of an isolate of the lineage was sequenced with a size of 52.3 Mb including 14 707 gene models. Based on morphology and phylogenetic analysis, we propose the novel species Darksidea phi, sp. nov. Metabarcoding data showed that D. phi distribution and relative abundance were not limited to semiarid regions or a specific grass species, suggesting low host specificity among graminoids. This new species, D. phi, expands the distribution of the genus in the United States beyond prior reports from arid regions.
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Affiliation(s)
- María-José Romero-Jiménez
- Department of Biological Sciences and Institute for Environmental Studies, Western Illinois University, Macomb, Illinois 61455
| | - Jennifer A Rudgers
- Department of Biology, University of New Mexico, Albuquerque, New Mexico 87131
| | - Ari Jumpponen
- Division of Biology, Kansas State University, Manhattan, Kansas 66506
| | - José Herrera
- Office of the Provost and Executive Vice President for Academic Affairs, Cedar Falls, Iowa 50614
| | | | - Cheryl Kuske
- Los Alamos National Laboratory, Los Alamos, New Mexico 87545
| | - John Dunbar
- Los Alamos National Laboratory, Los Alamos, New Mexico 87545
| | - Dániel G Knapp
- Department of Plant Anatomy, Institute of Biology, Eötvös Loránd University, Budapest, Hungary
| | - Gábor M Kovács
- Department of Plant Anatomy, Institute of Biology, Eötvös Loránd University, Budapest, Hungary
| | - Andrea Porras-Alfaro
- Department of Biological Sciences and Institute for Environmental Studies, Western Illinois University, Macomb, Illinois 61455.,Division of Environmental Biology, National Science Foundation, Alexandria, Virginia 22314
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11
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Xiao Y, Dai MX, Zhang GQ, Yang ZX, He YM, Zhan FD. Effects of the Dark Septate Endophyte (DSE) Exophiala pisciphila on the Growth of Root Cell Wall Polysaccharides and the Cadmium Content of Zea mays L. under Cadmium Stress. J Fungi (Basel) 2021; 7:jof7121035. [PMID: 34947018 PMCID: PMC8708371 DOI: 10.3390/jof7121035] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/06/2021] [Revised: 11/27/2021] [Accepted: 11/30/2021] [Indexed: 02/06/2023] Open
Abstract
This paper aims to investigate the mechanism by which dark septate endophytes (DSEs) enhance cadmium (Cd) tolerance in there host plants. Maize (Zea mays L.) was inoculated with a DSE, Exophiala pisciphila, under Cd stress at different concentrations (0, 5, 10, and 20 mg·kg−1). The results show that, under 20 mg/kg Cd stress, DSE significantly increased maize biomass and plant height, indicating that DSE colonization can be utilized to increase the Cd tolerance of host plants. More Cd was retained in DSE-inoculated roots, especially that fixed in the root cell wall (RCW). The capability of DSE to induce a higher Cd holding capacity in the RCW is caused by modulation of the total sugar and uronic acid of DSE-colonized RCW, mainly the pectin and hemicellulose fractions. The fourier-transform spectroscopy analysis results show that carboxyl, hydroxyl, and acidic groups are involved in Cd retention in the DSE-inoculated RCW. The promotion of the growth of maize and improvement in its tolerance to Cd due to DSEs are related to restriction of the translocation of Cd from roots to shoots; resistance of Cd uptake Cd inside cells; and the increase in RCW-integrated Cd through modulating RCW polysaccharide components.
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12
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He C, Wang W, Hou J, Li X. Dark Septate Endophytes Isolated From Wild Licorice Roots Grown in the Desert Regions of Northwest China Enhance the Growth of Host Plants Under Water Deficit Stress. Front Microbiol 2021; 12:522449. [PMID: 34248857 PMCID: PMC8260703 DOI: 10.3389/fmicb.2021.522449] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/23/2019] [Accepted: 04/20/2021] [Indexed: 11/13/2022] Open
Abstract
This study aimed to explore dark septate endophytes (DSE) that may improve the cultivation of medicinal plants in arid ecosystems. We isolated and identified eight DSE species (Acremonium nepalense, Acrocalymma vagum, Alternaria chartarum, Alternaria chlamydospora, Alternaria longissima, Darksidea alpha, Paraphoma chrysanthemicola, and Preussia terricola) colonizing the roots of wild licorice (Glycyrrhiza uralensis) in the desert areas of northwest China. Moreover, we investigated the osmotic stress tolerance of the DSE using pure culture, along with the performance of licorice plants inoculated with the DSE under drought stress in a growth chamber, respectively. Here, five species were first reported in desert habitats. The osmotic-stress tolerance of DSE species was highly variable, A. chlamydospora and P. terricola increased the total biomass and root biomass of the host plant. All DSE except A. vagum and P. chrysanthemicola increased the glycyrrhizic acid content; all DSE except A. chartarum increased the glycyrrhizin content under drought stress. DSE × watering regimen improved the glycyrrhizic acid content, soil organic matter, and available nitrogen. Structural equation model analysis showed that DSE × watering regimen positively affected soil organic matter, and total biomass, root length, glycyrrhizic acid, and glycyrrhizin (Shapotou site); and positively affected soil organic matter, available phosphorus, and glycyrrhizin (Minqin site); and positively affected the root length (Anxi site). DSE from the Shapotou site accounted for 8.0, 13.0, and 11.3% of the variations in total biomass, root biomass, and active ingredient content; DSE from the Minqin site accounted for 6.6 and 8.3% of the variations in total biomass and root biomass; DSE from the Anxi site accounted for 4.2 and 10.7% of the variations in total biomass and root biomass. DSE × watering regimen displayed a general synergistic effect on plant growth and active ingredient contents. These findings suggested that the DSE-plant interactions were affected by both DSE species and DSE originating habitats. As A. chlamydospora and P. terricola positively affected the total biomass, root biomass, and active ingredient content of host plants under drought stress, they may have important uses as promoters for the cultivation of licorice in dryland agriculture.
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Affiliation(s)
- Chao He
- Institute of Medicinal Plant Development, Chinese Academy of Medical Sciences, Peking Union Medical College, Beijing, China
| | - Wenquan Wang
- Institute of Medicinal Plant Development, Chinese Academy of Medical Sciences, Peking Union Medical College, Beijing, China
- School of Chinese Pharmacy, Beijing University of Chinese Medicine, Beijing, China
| | - Junling Hou
- School of Chinese Pharmacy, Beijing University of Chinese Medicine, Beijing, China
| | - Xianen Li
- Institute of Medicinal Plant Development, Chinese Academy of Medical Sciences, Peking Union Medical College, Beijing, China
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13
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Kohout P, Sudová R, Brabcová V, Vosolsobě S, Baldrian P, Albrechtová J. Forest Microhabitat Affects Succession of Fungal Communities on Decomposing Fine Tree Roots. Front Microbiol 2021; 12:541583. [PMID: 33584602 PMCID: PMC7876299 DOI: 10.3389/fmicb.2021.541583] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/09/2020] [Accepted: 01/06/2021] [Indexed: 01/16/2023] Open
Abstract
Belowground litter derived from tree roots has been shown as a principal source of soil organic matter in coniferous forests. Fate of tree root necromass depends on fungal communities developing on the decaying roots. Local environmental conditions which affect composition of tree root mycobiome may also influence fungal communities developing on decaying tree roots. Here, we assessed fungal communities associated with decaying roots of Picea abies decomposing in three microhabitats: soil with no vegetation, soil with ericoid shrubs cover, and P. abies deadwood, for a 2-year period. Forest microhabitat showed stronger effect on structuring fungal communities associated with decaying roots compared to living roots. Some ericoid mycorrhizal fungi showed higher relative abundance on decaying roots in soils under ericoid shrub cover, while saprotrophic fungi had higher relative abundance in roots decomposing inside deadwood. Regardless of the studied microhabitat, we observed decline of ectomycorrhizal fungi and increase of endophytic fungi during root decomposition. Interestingly, we found substantially more fungal taxa with unknown ecology in late stages of root decomposition, indicating that highly decomposed roots may represent so far overlooked niche for soil fungi. Our study shows the importance of microhabitats on the fate of the decomposing spruce roots.
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Affiliation(s)
- Petr Kohout
- Institute of Microbiology of the Czech Academy of Sciences, Prague, Czechia
- Institute of Botany of the Czech Academy of Sciences, Pruhonice, Czechia
- Department of Experimental Plant Biology, Faculty of Science, Charles University, Prague, Czechia
| | - Radka Sudová
- Institute of Botany of the Czech Academy of Sciences, Pruhonice, Czechia
| | - Vendula Brabcová
- Institute of Microbiology of the Czech Academy of Sciences, Prague, Czechia
| | - Stanislav Vosolsobě
- Institute of Botany of the Czech Academy of Sciences, Pruhonice, Czechia
- Department of Experimental Plant Biology, Faculty of Science, Charles University, Prague, Czechia
| | - Petr Baldrian
- Institute of Microbiology of the Czech Academy of Sciences, Prague, Czechia
| | - Jana Albrechtová
- Institute of Botany of the Czech Academy of Sciences, Pruhonice, Czechia
- Department of Experimental Plant Biology, Faculty of Science, Charles University, Prague, Czechia
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14
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Gehring C, Sevanto S, Patterson A, Ulrich DEM, Kuske CR. Ectomycorrhizal and Dark Septate Fungal Associations of Pinyon Pine Are Differentially Affected by Experimental Drought and Warming. Front Plant Sci 2020; 11:582574. [PMID: 33193530 PMCID: PMC7606852 DOI: 10.3389/fpls.2020.582574] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/12/2020] [Accepted: 09/23/2020] [Indexed: 06/11/2023]
Abstract
Changing climates can cause shifts in temperature and precipitation, resulting in warming and drought in some regions. Although each of these factors has been shown to detrimentally affect forest ecosystems worldwide, information on the impacts of the combined effects of warming and drought is lacking. Forest trees rely on mutualistic root-associated fungi that contribute significantly to plant health and protection against climate stresses. We used a six-year, ecosystem-scale temperature and precipitation manipulation experiment targeted to simulate the climate in 2100 in the Southwestern United States to quantify the effects of drought, warming and combined drought and warming on the root colonization (abundance), species composition and diversity of ectomycorrhizal fungi (EMF), and dark septate fungal endophytes in a widespread woodland tree, pinyon pine (Pinus edulis E.). Our results show that pinyon shoot growth after 6 years of these treatments was reduced more by drought than warming. The combined drought and warming treatment reduced the abundance and diversity of EMF more than either treatment alone. Individual ectomycorrhizal fungal taxa, including the drought tolerant Cenococcum geophilum, were present in all treatments but the combined drought and warming treatment. The combined drought and warming treatment also reduced the abundance of dark septate endophytes (DSE), but did not affect their diversity or species composition. The current year shoot growth of the trees correlated positively with ectomycorrhizal fungal diversity, highlighting the importance of diversity in mutualistic relationships to plant growth. Our results suggest that EMF may be more important than DSE to aboveground growth in P. edulis, but also more susceptible to the negative effects of combined climate stressors.
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Affiliation(s)
- Catherine Gehring
- Department of Biological Sciences and Center for Adaptable Western Landscapes, Northern Arizona University, Flagstaff, AZ, United States
| | - Sanna Sevanto
- Earth and Environmental Science Division, Los Alamos National Laboratory, Los Alamos, NM, United States
| | - Adair Patterson
- Department of Biological Sciences and Center for Adaptable Western Landscapes, Northern Arizona University, Flagstaff, AZ, United States
| | | | - Cheryl R. Kuske
- Bioscience Division, Los Alamos National Laboratory, Los Alamos, NM, United States
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15
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Wu FL, Li Y, Tian W, Sun Y, Chen F, Zhang Y, Zhai Y, Zhang J, Su H, Wang L. A novel dark septate fungal endophyte positively affected blueberry growth and changed the expression of plant genes involved in phytohormone and flavonoid biosynthesis. Tree Physiol 2020; 40:1080-1094. [PMID: 32333677 DOI: 10.1093/treephys/tpaa047] [Citation(s) in RCA: 22] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/19/2019] [Revised: 02/05/2020] [Accepted: 04/20/2020] [Indexed: 05/25/2023]
Abstract
Dark septate endophytes (DSEs) are one of the most studied groups of root fungal endophytes in recent years. However, the effects of DSE on host plant are still under debate, and the molecular mechanisms are poorly understood. In this study, we identified a DSE fungus of the genus Anteaglonium, named T010, from the wild blueberry. When inoculated into Vaccinium corymbosum L. plants, T010 could enhance root growth and promote shoot branching, leading to increased plant growth. By comparative transcriptome analysis, we obtained 1948 regulated differentially expressed genes (DEGs) from the V. corymbosum plants treated by T010. Further functional enrichment analysis identified a series of DEGs enriched in transcriptional regulation, material transport, phytohormone biosynthesis and flavonoid biosynthesis. Moreover, the comparative analysis of liquid chromatography-mass spectrometry verified that T010 treatment induced the changes in the contents of various phytohormones and flavonoids. This is the first report on the isolation of DSE fungi of the genus Anteaglonium from blueberry roots. Moreover, our results suggested that T010 colonization could result in a series of changes in cell metabolism, biosynthesis and signal pathways, thereby promoting plant growth. Particularly, the changes of phytohormone and flavonoid metabolism induced by T010 colonization might contribute to the promotion of blueberry growth. Our results will provide new insights into understanding of the interaction of DSE fungi and host plants, as well as the development and utilization of DSE preparations.
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Affiliation(s)
- Fan-Lin Wu
- Key Laboratory of Molecular Module-Based Breeding of High Yield and Abiotic Resistant Plants in Universities of Shandong (Ludong University), College of Agriculture, Ludong University, Yantai 264025, P. R. China
| | - Yan Li
- Key Laboratory of Coastal Biology and Utilization, Yantai Institute of Coastal Zone Research, Chinese Academy of Sciences, Yantai 264025, P. R. China
| | - Wei Tian
- Key Laboratory of Molecular Module-Based Breeding of High Yield and Abiotic Resistant Plants in Universities of Shandong (Ludong University), College of Agriculture, Ludong University, Yantai 264025, P. R. China
| | - Yadong Sun
- Key Laboratory of Molecular Module-Based Breeding of High Yield and Abiotic Resistant Plants in Universities of Shandong (Ludong University), College of Agriculture, Ludong University, Yantai 264025, P. R. China
| | - Feiyan Chen
- Key Laboratory of Molecular Module-Based Breeding of High Yield and Abiotic Resistant Plants in Universities of Shandong (Ludong University), College of Agriculture, Ludong University, Yantai 264025, P. R. China
| | - Yurou Zhang
- College of life sciences, Ludong Universtiy, Yantai 264025, P. R. China
| | - Yuxuan Zhai
- College of life sciences, Ludong Universtiy, Yantai 264025, P. R. China
| | - Jing Zhang
- Bureau of National Resources of the Laishan District, Yantai 264025, P. R. China
| | - Hongyan Su
- Key Laboratory of Molecular Module-Based Breeding of High Yield and Abiotic Resistant Plants in Universities of Shandong (Ludong University), College of Agriculture, Ludong University, Yantai 264025, P. R. China
| | - Lei Wang
- College of life sciences, Ludong Universtiy, Yantai 264025, P. R. China
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16
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Harsonowati W, Marian M, Surono, Narisawa K. The Effectiveness of a Dark Septate Endophytic Fungus, Cladophialophora chaetospira SK51, to Mitigate Strawberry Fusarium Wilt Disease and With Growth Promotion Activities. Front Microbiol 2020; 11:585. [PMID: 32351466 PMCID: PMC7174500 DOI: 10.3389/fmicb.2020.00585] [Citation(s) in RCA: 26] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/26/2020] [Accepted: 03/18/2020] [Indexed: 01/16/2023] Open
Abstract
Strawberry Fusarium wilt, caused by the virulent fungus Fusarium oxysporum formae speciales fragariae (Fof) is a devastating soil-borne disease that causes severe production losses worldwide, including Japan. Fof is one of the top 10 fungal pathogens that threaten global crop security, and a method to effectively control this pathogen has yet to be found. This study aimed to investigate the effectiveness of dark septate endophytic (DSE) fungi against Fof to develop an efficient, effective, and environmentally friendly approach to improve plant health and fitness. A total of 19 fungal isolates were assessed, out of which three (SK47, SK48, and SK51) were selected based on their effectiveness in disease suppression in controlled growth chamber conditions using a soil system. Isolates SK47, SK48, and SK51 suppressed disease severity by 85.71, 61.90, and 90.48%, respectively. Molecular identification based on highly conserved small subunit (SSU), internal transcribed spacer (ITS), and large subunit (LSU) nrRNA regions identified these isolates as DSE Exophiala sp., Exophiala pisciphila, and Cladophialophora chaetospira, respectively. The sequences were deposited under accession numbers MN811693-MN811695 in the GenBank database. Notably, our results revealed that isolate C. chaetospira SK51 possessed superior growth promotion activities as well as disease suppression by significantly increased plant growth parameters (shoot and root dry mass, chlorophyll content, flower bud initiation, and number of fruit) in comparison to control plants and other two fungal candidates. Root colonization by C. chaetospira SK51 was visualized, and it was confirmed that the symbiosis with strawberry plants occurred successfully. Our results provide new insights in the application of DSE fungus C. chaetospira SK51 as a biocontrol agent on strawberry plants could promote plant growth, flower bud initiation, and fruit formation. C. chaetospira SK51 exhibited remarkable beneficial traits for the host plant, and it can potentially be applied in the development of new, safe, and effective treatments as an alternative to chemical fertilizers and fungicides for sustainable crop protection.
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Affiliation(s)
- Wiwiek Harsonowati
- Department of Symbiotic Science of Environment and Natural Resources, United Graduate School of Agriculture Science, Tokyo University of Agriculture and Technology, Tokyo, Japan
| | - Malek Marian
- Department of Bioresource Science, College of Agriculture, Ibaraki University, Ibaraki, Japan
| | - Surono
- Department Soil Biology and Health, Indonesian Agency for Agricultural Research and Development, Jakarta, Indonesia
| | - Kazuhiko Narisawa
- Department of Symbiotic Science of Environment and Natural Resources, United Graduate School of Agriculture Science, Tokyo University of Agriculture and Technology, Tokyo, Japan
- Department of Bioresource Science, College of Agriculture, Ibaraki University, Ibaraki, Japan
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17
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Robinson CH, Wookey PA, Parker TC. Root-associated fungi and carbon storage in Arctic ecosystems. New Phytol 2020; 226:8-10. [PMID: 32053735 DOI: 10.1111/nph.16443] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
Affiliation(s)
- Clare H Robinson
- Department of Earth and Environmental Sciences, The University of Manchester, Williamson Building, Oxford Road, Manchester, M13 9PL, UK
| | - Philip A Wookey
- Department of Biological and Environmental Sciences, School of Natural Sciences, University of Stirling, Stirling, FK9 4LA, UK
| | - Thomas C Parker
- Department of Biological and Environmental Sciences, School of Natural Sciences, University of Stirling, Stirling, FK9 4LA, UK
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18
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Hou L, Yu J, Zhao L, He X. Dark Septate Endophytes Improve the Growth and the Tolerance of Medicago sativa and Ammopiptanthus mongolicus Under Cadmium Stress. Front Microbiol 2020; 10:3061. [PMID: 32047481 PMCID: PMC6997539 DOI: 10.3389/fmicb.2019.03061] [Citation(s) in RCA: 31] [Impact Index Per Article: 7.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/07/2019] [Accepted: 12/18/2019] [Indexed: 01/27/2023] Open
Abstract
Although the ecological function of dark septate endophytes (DSEs) is well studied, little is known about the responses of the host plant to DSEs obtained from other plants, especially under conditions of heavy metal stress. This study aimed to investigate how DSEs from a heavy-metal habitat affect non-host plants in cadmium (Cd) stress soils, which then provides a basis for the application of DSEs in the cultivation of different plant and soil remediation strategies for polluted ecosystems. We isolated and identified two species of DSE (Acrocalymma vagum and Scytalidium lignicola) inhabiting the roots of Ilex chinensis (host plant) which are grown in metal-polluted habitats. Then, the Cd stress tolerance of the DSEs was tested using a pure culture of which the Cd concentration has been adjusted. Subsequently, we examined the performance of non-host plants (Medicago sativa and Ammopiptanthus mongolicus) which were inoculated with DSEs under Cd stress in a growth chamber. The results indicated that the two DSEs could grow under Cd stress in vitro, even when not exhibiting high levels of tolerance to Cd. The superoxide dismutase (SOD), malondialdehyde (MDA), glutathione (GSH), soluble protein, and melanin of the DSE fungi reached maximal levels at concentrations of 30-60 mg Cd/L, indicating the important preventive strategies adopted by the DSE fungi in environments contaminated by Cd. Despite a decreased biomass of DSE hyphae with enhanced Cd concentrations, the accumulation of Cd in the DSE hyphae tended to show an increasing trend. Both DSEs were effective colonizers of the non-host plants. A. vagum and S. lignicola inoculation significantly promoted the biomass and the root architecture of the two non-host plants under Cd stress. A. vagum inoculation increased the total nitrogen (TN) of A. mongolicus, whereas inoculation with S. lignicola significantly increased the organic carbon (OC) of M. sativa. In particular, the DSE inoculation significantly improved the accumulation of Cd in plant tissues under Cd stress, demonstrating a potential application in the bio-remediation of heavy-metal-pollution areas. Our findings suggest that the DSE inoculation improved the root growth and nutrient absorption of non-host plants, altered the soil Cd concentration, and facilitated plant growth and survival under Cd stress. These results contribute to a better understanding of DSE-plant interactions in habitats contaminated by heavy metals.
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Affiliation(s)
| | | | | | - Xueli He
- College of Life Sciences, Hebei University, Baoding, China
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19
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Yakti W, Kovács GM, Franken P. Differential interaction of the dark septate endophyte Cadophora sp. and fungal pathogens in vitro and in planta. FEMS Microbiol Ecol 2019; 95:fiz164. [PMID: 31609451 PMCID: PMC6864363 DOI: 10.1093/femsec/fiz164] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/06/2019] [Accepted: 11/05/2019] [Indexed: 12/20/2022] Open
Abstract
Dark septate endophytes (DSEs) present a group of widespread root-colonizing fungi. The role of these endophytes in ecosystems and their interactions with plant pathogens are not well understood. In the current study, we assessed the antagonistic potential of the model DSE Cadophora sp. against the tomato soilborne pathogens Rhizoctonia solani, Pythium aphanidermatum and Verticillium dahliae. To investigate their interactions, we conducted in vitro assays followed by a greenhouse experiments in which tomato plants were inoculated with different combinations of the DSE and pathogens. RNA accumulation of selected tomato pathogenesis-related genes and of Cadophora sp. genes with putative antifungal function was analyzed. Cadophora sp. inhibited the growth of the fungal pathogens in vitro and vice versa; a negative impact of the pathogens on the growth of the DSE was also detected. In roots, however, this mutual negative interaction could not be observed. Expression analyses of plant genes could not explain this differential effect, but among the Cadophora sp. genes analyzed, a gene coding for a chalcone synthase was downregulated in planta. The data indicate that plants can change the interaction between fungi and, therefore, in vitro detected antagonism does not necessarily reflect the situation inside the plant.
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Affiliation(s)
- Wael Yakti
- Leibniz Institute of Vegetable and Ornamental Crops, Theodor-Echtermeyer-Weg 1,14979 Großbeeren, Brandenburg, Germany and Institute of Biology, Plant Physiology Department, Humboldt University of Berlin, Philippstraße 13, 10115 Berlin, Germany
| | - Gábor M Kovács
- Department of Plant Anatomy, Institute of Biology, Eötvös Loránd University, Pázmány Péter sétány 1/C, 1117 Budapest, Hungary
- Plant Protection Institute, Centre for Agricultural Research, Budapest 1022, Hungary
| | - Philipp Franken
- Leibniz Institute of Vegetable and Ornamental Crops, Theodor-Echtermeyer-Weg 1,14979 Großbeeren, Brandenburg, Germany and Institute of Biology, Plant Physiology Department, Humboldt University of Berlin, Philippstraße 13, 10115 Berlin, Germany
- Erfurt Research Centre for Horticultural Crops, University of Applied Sciences, Kühnhäuser Straße 101, 99090 Erfurt, Thuringia, Germany
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20
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Hill PW, Broughton R, Bougoure J, Havelange W, Newsham KK, Grant H, Murphy DV, Clode P, Ramayah S, Marsden KA, Quilliam RS, Roberts P, Brown C, Read DJ, Deluca TH, Bardgett RD, Hopkins DW, Jones DL. Angiosperm symbioses with non-mycorrhizal fungal partners enhance N acquisition from ancient organic matter in a warming maritime Antarctic. Ecol Lett 2019; 22:2111-2119. [PMID: 31621153 PMCID: PMC6899649 DOI: 10.1111/ele.13399] [Citation(s) in RCA: 34] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/13/2019] [Revised: 07/26/2019] [Accepted: 09/10/2019] [Indexed: 01/01/2023]
Abstract
In contrast to the situation in plants inhabiting most of the world’s ecosystems, mycorrhizal fungi are usually absent from roots of the only two native vascular plant species of maritime Antarctica, Deschampsia antarctica and Colobanthus quitensis. Instead, a range of ascomycete fungi, termed dark septate endophytes (DSEs), frequently colonise the roots of these plant species. We demonstrate that colonisation of Antarctic vascular plants by DSEs facilitates not only the acquisition of organic nitrogen as early protein breakdown products, but also as non‐proteinaceous d‐amino acids and their short peptides, accumulated in slowly‐decomposing organic matter, such as moss peat. Our findings suggest that, in a warming maritime Antarctic, this symbiosis has a key role in accelerating the replacement of formerly dominant moss communities by vascular plants, and in increasing the rate at which ancient carbon stores laid down as moss peat over centuries or millennia are returned to the atmosphere as CO2.
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Affiliation(s)
- Paul W Hill
- School of Natural Sciences, Bangor University, Bangor, LL57 2UW, UK
| | - Richard Broughton
- British Antarctic Survey, Natural Environment Research Council, High Cross, Madingley Road, Cambridge, CB3 OET, UK.,Institute of Aquaculture, University of Stirling, Stirling, UK
| | - Jeremy Bougoure
- Faculty of Science, SoilsWest, UWA School of Agriculture and Environment, University of Western Australia, Crawley, WA, 6009, Australia.,Centre for Microscopy, Characterisation and Analysis, University of Western Australia, Crawley, WA, 6009, Australia
| | | | - Kevin K Newsham
- British Antarctic Survey, Natural Environment Research Council, High Cross, Madingley Road, Cambridge, CB3 OET, UK
| | - Helen Grant
- Life Sciences Mass Spectrometry Facility, Lancaster Environment Centre, Lancaster, LA1 4AP, UK
| | - Daniel V Murphy
- Faculty of Science, SoilsWest, UWA School of Agriculture and Environment, University of Western Australia, Crawley, WA, 6009, Australia
| | - Peta Clode
- Centre for Microscopy, Characterisation and Analysis, University of Western Australia, Crawley, WA, 6009, Australia.,UWA School of Biological Sciences, University of Western Australia, Crawley, WA, 6009, Australia
| | - Soshila Ramayah
- School of Natural Sciences, Bangor University, Bangor, LL57 2UW, UK
| | - Karina A Marsden
- School of Natural Sciences, Bangor University, Bangor, LL57 2UW, UK.,Faculty of Veterinary and Agricultural Sciences, The University of Melbourne, Parkville, Vic., 3010, Australia
| | - Richard S Quilliam
- School of Natural Sciences, Bangor University, Bangor, LL57 2UW, UK.,Biological and Environmental Sciences, Faculty of Natural Sciences, University of Stirling, Stirling, FK9 4LA, UK
| | - Paula Roberts
- School of Natural Sciences, Bangor University, Bangor, LL57 2UW, UK
| | - Caley Brown
- School of Natural Sciences, Bangor University, Bangor, LL57 2UW, UK
| | - David J Read
- Animal and Plant Sciences, University of Sheffield, Western bank, Sheffield, S10 2TN, UK
| | - Thomas H Deluca
- School of Natural Sciences, Bangor University, Bangor, LL57 2UW, UK.,WA Franke College of Forestry and Conservation, University of Montana, Missoula, MT, 59812, USA
| | - Richard D Bardgett
- School of Earth and Environmental Sciences, University of Manchester, Manchester, M13 9PL, UK
| | - David W Hopkins
- SRUC - Scotland's Rural College, West Mains Road, Edinburgh, EH9 3JG, UK
| | - Davey L Jones
- School of Natural Sciences, Bangor University, Bangor, LL57 2UW, UK.,Faculty of Science, SoilsWest, UWA School of Agriculture and Environment, University of Western Australia, Crawley, WA, 6009, Australia
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21
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He C, Wang W, Hou J. Plant Growth and Soil Microbial Impacts of Enhancing Licorice With Inoculating Dark Septate Endophytes Under Drought Stress. Front Microbiol 2019; 10:2277. [PMID: 31649632 PMCID: PMC6794389 DOI: 10.3389/fmicb.2019.02277] [Citation(s) in RCA: 33] [Impact Index Per Article: 6.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/08/2019] [Accepted: 09/18/2019] [Indexed: 01/28/2023] Open
Abstract
This study mainly aimed to investigate the effects of dark septate endophytes (DSE) (Acrocalymma vagum, Paraboeremia putaminum, and Fusarium acuminatum) on the growth and microbial community composition in the rhizosphere soil of a medicinal plant, licorice (Glycyrrhiza uralensis), grown in the non-sterile soil under drought stress. The results showed that three DSE strains could effectively colonize the plant roots and form a strain-dependent symbiosis with licorice. Although drought stress declined the growth of licorice plants, these decreases were partly recovered by DSE inoculation. Specifically, the inoculation of A. vagum and P. putaminum significantly increased the biomass and glycyrrhizin content, whereas A. vagum and F. acuminatum increased glycyrrhizic acid content of host plants under drought stress. However, the inoculation of F. acuminatum showed significant negative effects on the shoot, root, and total biomass of licorice plants. In addition, the effects of DSE inoculation on the morphological, photosynthetic, and antioxidant parameters of licorice plants, and mineral nutrient and microbial community composition in the rhizosphere soil were dependent on the DSE species as well as water regime. Interestingly, DSE inoculation significantly increased AM fungi content under drought stress. In addition, DSE associated with water had a significant positive influence on soil organic matter, available phosphorus (P), AM fungi, leaf number, soluble protein, SOD activity, total root length, root branch, and glycyrrhizic acid content. Based on the results of variance partitioning analysis, 17.0, 34.0, 14.9, 40.1, 28.2, and 18.0% variations in shoot morphology, root morphology, plant biomass, active ingredient, photosynthetic parameters, and antioxidant parameters, respectively, were attributable to the presence of certain soil microorganisms. These findings suggest the possibility that DSE inoculation improved the root development and nutrient absorption of host plants, altered the soil microbiota, and might also contribute to plant growth and survival under drought conditions. As A. vagum exhibited positive effects on the plant biomass, morphological and physiological parameters, and active ingredient content in licorice plants under drought stress, it was considered to be the best fungus for licorice cultivation. These results contribute to the understanding of the ecological function of DSE fungi in dryland agriculture.
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Affiliation(s)
- Chao He
- Institute of Medicinal Plant Development, Chinese Academy of Medical Sciences & Peking Union Medical College, Beijing, China
| | - Wenquan Wang
- Institute of Medicinal Plant Development, Chinese Academy of Medical Sciences & Peking Union Medical College, Beijing, China
- School of Chinese Pharmacy, Beijing University of Chinese Medicine, Beijing, China
| | - Junling Hou
- School of Chinese Pharmacy, Beijing University of Chinese Medicine, Beijing, China
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22
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Li X, He XL, Zhou Y, Hou YT, Zuo YL. Effects of Dark Septate Endophytes on the Performance of Hedysarum scoparium Under Water Deficit Stress. Front Plant Sci 2019; 10:903. [PMID: 31354772 PMCID: PMC6637391 DOI: 10.3389/fpls.2019.00903] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/30/2018] [Accepted: 06/26/2019] [Indexed: 06/01/2023]
Abstract
Hedysarum scoparium, a species characterized by rapid growth and high drought resistance, has been used widely for vegetative restoration of arid regions in Northwest China that are prone to desertification. Desert soil is typically deficient in available water and the alleviation of drought stress to host plants by endophytes could be an efficient strategy to increase the success of desert restoration. With the objective to seek more beneficial symbionts that can be used in the revegetation strategies, we addressed the question whether H. scoparium can benefit from inoculation by dark septate endophytes (DSEs) isolated from other desert plants. We investigated the influences of four non-host DSE strains (Phialophora sp., Knufia sp., Leptosphaeria sp., and Embellisia chlamydospora) isolated from other desert plants on the performance of H. scoparium under different soil water conditions. Differences in plant performance, such as plant growth, antioxidant enzyme activities, carbon, nitrogen, and phosphorous concentration under all the treatments, were examined. Four DSE strains could colonize the roots of H. scoparium successfully, and they established a positive symbiosis with the host plants depending on DSE species and water availability. The greatest benefits of DSE inoculation occurred in water stress treatment. Specifically, Phialophora sp. and Leptosphaeria sp. improved the root biomass, total biomass, nutrient concentration, and antioxidant enzyme activities of host plants under water deficit conditions. These data contribute to the understanding of the ecological function of DSE fungi in drylands.
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Affiliation(s)
- Xia Li
- College of Life Science, Hebei University, Baoding, China
| | - Xue-Li He
- College of Life Science, Hebei University, Baoding, China
| | - Yong Zhou
- College of Landscape Architecture and Tourism, Hebei Agricultural University, Baoding, China
| | - Yi-Ting Hou
- College of Life Science, Hebei University, Baoding, China
| | - Yi-Ling Zuo
- College of Life Science, Hebei University, Baoding, China
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23
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Vohník M, Borovec O, Kolaříková Z, Sudová R, Réblová M. Extensive sampling and high-throughput sequencing reveal Posidoniomycesatricolor gen. et sp. nov. (Aigialaceae, Pleosporales) as the dominant root mycobiont of the dominant Mediterranean seagrass Posidoniaoceanica. MycoKeys 2019; 55:59-86. [PMID: 31303813 PMCID: PMC6609996 DOI: 10.3897/mycokeys.55.35682] [Citation(s) in RCA: 23] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/23/2019] [Accepted: 06/06/2019] [Indexed: 11/12/2022] Open
Abstract
Seagrasses provide invaluable ecosystem services yet very little is known about their root mycobiont diversity and distribution. Here we focused on the dominant Mediterranean seagrass Posidoniaoceanica and assessed its root mycobiome at 32 localities covering most of the ecoregions in the NW Mediterranean Sea using light and scanning electron microscopy and tag-encoded 454-pyrosequencing. Microscopy revealed that the recently discovered dark septate endophytic association specific for P.oceanica is present at all localities and pyrosequencing confirmed that the P.oceanica root mycobiome is dominated by a single undescribed pleosporalean fungus, hitherto unknown from other hosts and ecosystems. Its numerous slow-growing isolates were obtained from surface-sterilised root segments at one locality and after prolonged cultivation, several of them produced viable sterile mycelium. To infer their phylogenetic relationships we sequenced and analysed the large (LSU) and small (SSU) subunit nrDNA, the ITS nrDNA and the DNA-directed RNA polymerase II (RPB2). The fungus represents an independent marine biotrophic lineage in the Aigialaceae (Pleosporales) and is introduced here as Posidoniomycesatricolor gen. et sp. nov. Its closest relatives are typically plant-associated saprobes from marine, terrestrial and freshwater habitats in Southeast Asia and Central America. This study expands our knowledge and diversity of the Aigialaceae, adds a new symbiotic lifestyle to this family and provides a formal name for the dominant root mycobiont of the dominant Mediterranean seagrass.
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Affiliation(s)
- Martin Vohník
- Department of Mycorrhizal Symbioses, Institute of Botany, Czech Academy of Sciences, Lesní 322, 252 43 Průhonice, Czech RepublicInstitute of Botany, Czech Academy of SciencesPrůhoniceCzech Republic
- Department of Experimental Plant Biology, Faculty of Science, Charles University, Viničná 5, 128 44 Prague, Czech RepublicCharles UniversityPragueCzech Republic
| | - Ondřej Borovec
- Department of Mycorrhizal Symbioses, Institute of Botany, Czech Academy of Sciences, Lesní 322, 252 43 Průhonice, Czech RepublicInstitute of Botany, Czech Academy of SciencesPrůhoniceCzech Republic
- Department of Experimental Plant Biology, Faculty of Science, Charles University, Viničná 5, 128 44 Prague, Czech RepublicCharles UniversityPragueCzech Republic
| | - Zuzana Kolaříková
- Department of Mycorrhizal Symbioses, Institute of Botany, Czech Academy of Sciences, Lesní 322, 252 43 Průhonice, Czech RepublicInstitute of Botany, Czech Academy of SciencesPrůhoniceCzech Republic
| | - Radka Sudová
- Department of Mycorrhizal Symbioses, Institute of Botany, Czech Academy of Sciences, Lesní 322, 252 43 Průhonice, Czech RepublicInstitute of Botany, Czech Academy of SciencesPrůhoniceCzech Republic
| | - Martina Réblová
- Department of Taxonomy, Institute of Botany, Czech Academy of Sciences, Zámek 1, 252 43 Průhonice, Czech RepublicInstitute of Botany, Czech AcademyPrůhoniceCzech Republic
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24
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He C, Wang W, Hou J. Characterization of Dark Septate Endophytic Fungi and Improve the Performance of Liquorice Under Organic Residue Treatment. Front Microbiol 2019; 10:1364. [PMID: 31275282 PMCID: PMC6592127 DOI: 10.3389/fmicb.2019.01364] [Citation(s) in RCA: 26] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/05/2019] [Accepted: 05/31/2019] [Indexed: 11/16/2022] Open
Abstract
Dark septate endophytic (DSE) fungi is a diverse group of Ascomycetes fungi that colonize the plants roots, and may facilitate plant growth and fitness, however, their ecological roles need further clarification. This study aimed to evaluate the growth promoting effects of DSE fungi in a medicinal plant, liquorice (Glycyrrhiza uralensis), under additional organic residues. First, we isolated, identified and characterized, two DSE fungal species (Acrocalymma vagum and Paraboeremia putaminum) harboring inside the roots of liquorice growing in arid areas of China. Second, we examined the performance and rhizosphere soil parameters of liquorice plants inoculated with these fungi under additional sterilized organic residues and unsterilized organic residue (containing Trichoderma viride population) in a growth chamber. The results showed that two DSE strains could effectively colonize plant roots and formed a strain-dependent symbiosis with liquorice. DSE inoculation alone increased the plant biomass, and glycyrrhizic acid and glycyrrhizin content. It also improved the root system and N and P absorption by plants, consequently depleting these macronutrients in the soil. Residues alone increased soil organic matter, available phosphorus (P), and available nitrogen (N) content, and plant biomass, N, P, glycyrrhizic acid, and glycyrrhizin content. Mantel test and structural equation model (SEM) analysis demonstrated that DSE associated with residues significantly positively influenced soil organic matter, available P and available N, and plant biomass, glycyrrhizin, N, P, and root surface area. Variation in plant growth and glycyrrhizic acid and glycyrrhizin accumulation can be attributed to the effects of DSE inoculation. DSE associated with residues exhibited a general synergistic effect on the growth and accumulation of glycyrrhizic acid and glycyrrhizin of liquorice. We demonstrate for the first time, two DSE fungi in the liquorice roots that have potential use as promoter for the cultivation of medicinal plant.
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Affiliation(s)
- Chao He
- Institute of Medicinal Plant Development, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing, China
| | - Wenquan Wang
- Institute of Medicinal Plant Development, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing, China
- School of Chinese Pharmacy, Beijing University of Chinese Medicine, Beijing, China
| | - Junling Hou
- School of Chinese Pharmacy, Beijing University of Chinese Medicine, Beijing, China
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25
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Gibert A, Tozer W, Westoby M. Plant performance response to eight different types of symbiosis. New Phytol 2019; 222:526-542. [PMID: 30697746 DOI: 10.1111/nph.15392] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/17/2018] [Accepted: 07/07/2018] [Indexed: 06/09/2023]
Abstract
Almost all plant species interact with one or more symbioses somewhere within their distribution range. Bringing together plant trait data and growth responses to symbioses spanning 552 plant species, we provide for the first time on a large scale (597 studies) a quantitative synthesis on plant performance differences between eight major types of symbiosis, including mycorrhizas, N-fixing bacteria, fungal endophytes and ant-plant interactions. Frequency distributions of plant growth responses varied considerably between different types of symbiosis, in terms of both mean effect and 'risk', defined here as percentage of experiments reporting a negative effect of symbiosis on plants. Contrary to expectation, plant traits were poor predictors of growth response across and within all eight symbiotic associations. Our analysis showed no systematic additive effect when a host plant engaged in two functionally different symbioses. This synthesis suggests that plant species' ecological strategies have little effect in determining the influence of a symbiosis on host plant growth. Reliable quantification of differences in plant performance across symbioses will prove valuable for developing general hypotheses on how species become engaged in mutualisms without a guarantee of net returns.
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Affiliation(s)
- Anais Gibert
- Department of Biological Sciences, Macquarie University, Sydney, NSW, 2109, Australia
| | - Wade Tozer
- Department of Biological Sciences, Macquarie University, Sydney, NSW, 2109, Australia
| | - Mark Westoby
- Department of Biological Sciences, Macquarie University, Sydney, NSW, 2109, Australia
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26
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Chu H, Tang M, Wang H, Wang C. Pinewood nematode infection alters root mycoflora of Pinus tabulaeformis Carr. J Appl Microbiol 2018; 125:554-563. [PMID: 29675985 DOI: 10.1111/jam.13883] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/16/2017] [Revised: 04/01/2018] [Accepted: 04/03/2018] [Indexed: 11/29/2022]
Abstract
AIMS This study investigates pinewood nematode's impacts on root mycoflora of Pinus tabulaeformis. METHODS AND RESULTS The biomass, colonization rate, community structure and diversity of root-associated fungi were investigated in pinewood nematode-infected and nematode-noninfected P. tabulaeformis. The results indicated that the roots of P. tabulaeformis were colonized highly by root-associated fungi, mainly ectomycorrhizal fungi (ECMF) and dark septate endophytes. Infection of pinewood nematode was associated with a significant (P < 0·05) decrease in root colonization rates by ECMF, dark septate endophytes and total hyphae, as well as in fungal biomass in the roots. Illumina MiSeq sequences of tagged amplicons of 18S rDNA region revealed Basidiomycota (65·70%) and Ascomycota (34·14%) as the dominant root-associated fungi in roots of P. tabulaeformis. Among the detected operational taxonomic units (OTUs), ECMF and dark septate endophytes exhibited a higher relative abundance in trees infected by pinewood nematode compared with noninfected ones. CONCLUSIONS The infection of pinewood nematode altered the composition and OTU abundance of root-associated fungi community in P. tabulaeformis roots with a decrease in the biomass, species richness and diversity of root-associated fungi, as well as in the colonization rates and abundance of ECMF and dark septate endophytes. SIGNIFICANCE AND IMPACT OF THE STUDY This study is an important contribution for better understanding the interaction between pine wilt disease and root-associated fungi.
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Affiliation(s)
- H Chu
- College of Forestry, Northwest A&F University, Yangling, China.,College of Biological Resource and Food Engineering, Center for Yunnan Plateau Biological Resources Protection and Utilization, Qujing Normal University, Qujing, Yunnan, China
| | - M Tang
- College of Forestry, Northwest A&F University, Yangling, China.,State Key Laboratory of Conservation and Utilization of Subtropical Agro-bioresources (South China Agricultural University), Guangdong Key Laboratory for Innovative Development and Utilization of Forest Plant Germplasm, College of Forestry and Landscape Architecture, South China Agricultural University, Guangzhou, China
| | - H Wang
- College of Forestry, Northwest A&F University, Yangling, China
| | - C Wang
- College of Forestry, Northwest A&F University, Yangling, China
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27
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Toju H, Sato H. Root-Associated Fungi Shared Between Arbuscular Mycorrhizal and Ectomycorrhizal Conifers in a Temperate Forest. Front Microbiol 2018; 9:433. [PMID: 29593682 PMCID: PMC5858530 DOI: 10.3389/fmicb.2018.00433] [Citation(s) in RCA: 27] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/16/2017] [Accepted: 02/26/2018] [Indexed: 11/29/2022] Open
Abstract
Arbuscular mycorrhizal and ectomycorrhizal symbioses are among the most important drivers of terrestrial ecosystem dynamics. Historically, the two types of symbioses have been investigated separately because arbuscular mycorrhizal and ectomycorrhizal plant species are considered to host discrete sets of fungal symbionts (i.e., arbuscular mycorrhizal and ectomycorrhizal fungi, respectively). Nonetheless, recent studies based on high-throughput DNA sequencing technologies have suggested that diverse non-mycorrhizal fungi (e.g., endophytic fungi) with broad host ranges play roles in relationships between arbuscular mycorrhizal and ectomycorrhizal plant species in forest ecosystems. By analyzing an Illumina sequencing dataset of root-associated fungi in a temperate forest in Japan, we statistically examined whether co-occurring arbuscular mycorrhizal (Chamaecyparis obtusa) and ectomycorrhizal (Pinus densiflora) plant species could share non-mycorrhizal fungal communities. Among the 919 fungal operational taxonomic units (OTUs) detected, OTUs in various taxonomic lineages were statistically designated as “generalists,” which associated commonly with both coniferous species. The list of the generalists included fungi in the genera Meliniomyces, Oidiodendron, Cladophialophora, Rhizodermea, Penicillium, and Mortierella. Meanwhile, our statistical analysis also detected fungi preferentially associated with Chamaecyparis (e.g., Pezicula) or Pinus (e.g., Neolecta). Overall, this study provides a basis for future studies on how arbuscular mycorrhizal and ectomycorrhizal plant species interactively drive community- or ecosystem-scale processes. The physiological functions of the fungi highlighted in our host-preference analysis deserve intensive investigations for understanding their roles in plant endosphere and rhizosphere.
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Affiliation(s)
- Hirokazu Toju
- Center for Ecological Research, Kyoto University, Otsu, Japan.,Precursory Research for Embryonic Science and Technology, Japan Science and Technology Agency, Kawaguchi, Japan
| | - Hirotoshi Sato
- Graduate School of Human and Environmental Studies, Kyoto University, Kyoto, Japan
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28
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Qin Y, Pan X, Kubicek C, Druzhinina I, Chenthamara K, Labbé J, Yuan Z. Diverse Plant-Associated Pleosporalean Fungi from Saline Areas: Ecological Tolerance and Nitrogen-Status Dependent Effects on Plant Growth. Front Microbiol 2017; 8:158. [PMID: 28220113 PMCID: PMC5292420 DOI: 10.3389/fmicb.2017.00158] [Citation(s) in RCA: 31] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/09/2016] [Accepted: 01/20/2017] [Indexed: 12/14/2022] Open
Abstract
Similar to mycorrhizal mutualists, the rhizospheric and endophytic fungi are also considered to act as active regulators of host fitness (e.g., nutrition and stress tolerance). Despite considerable work in selected model systems, it is generally poorly understood how plant-associated fungi are structured in habitats with extreme conditions and to what extent they contribute to improved plant performance. Here, we investigate the community composition of root and seed-associated fungi from six halophytes growing in saline areas of China, and found that the pleosporalean taxa (Ascomycota) were most frequently isolated across samples. A total of twenty-seven representative isolates were selected for construction of the phylogeny based on the multi-locus data (partial 18S rDNA, 28S rDNA, and transcription elongation factor 1-α), which classified them into seven families, one clade potentially representing a novel lineage. Fungal isolates were subjected to growth response assays by imposing temperature, pH, ionic and osmotic conditions. The fungi had a wide pH tolerance, while most isolates showed a variable degree of sensitivity to increasing concentration of either salt or sorbitol. Subsequent plant-fungal co-culture assays indicated that most isolates had only neutral or even adverse effects on plant growth in the presence of inorganic nitrogen. Interestingly, when provided with organic nitrogen sources the majority of the isolates enhanced plant growth especially aboveground biomass. Most of the fungi preferred organic nitrogen over its inorganic counterpart, suggesting that these fungi can readily mineralize organic nitrogen into inorganic nitrogen. Microscopy revealed that several isolates can successfully colonize roots and form melanized hyphae and/or microsclerotia-like structures within cortical cells suggesting a phylogenetic assignment as dark septate endophytes. This work provides a better understanding of the symbiotic relationship between plants and pleosporalean fungi, and initial evidence for the use of this fungal group in benefiting plant production.
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Affiliation(s)
- Yuan Qin
- Institute of Subtropical Forestry, Chinese Academy of ForestryHangzhou, China
| | - Xueyu Pan
- Institute of Subtropical Forestry, Chinese Academy of ForestryHangzhou, China
| | - Christian Kubicek
- Research Area Biochemical Technology, Institute of Chemical Engineering, TU WienVienna, Austria
| | - Irina Druzhinina
- Research Area Biochemical Technology, Institute of Chemical Engineering, TU WienVienna, Austria
| | - Komal Chenthamara
- Research Area Biochemical Technology, Institute of Chemical Engineering, TU WienVienna, Austria
| | - Jessy Labbé
- Research Area Biochemical Technology, Institute of Chemical Engineering, TU WienVienna, Austria
| | - Zhilin Yuan
- Institute of Subtropical Forestry, Chinese Academy of ForestryHangzhou, China
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29
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Berthelot C, Leyval C, Foulon J, Chalot M, Blaudez D. Plant growth promotion, metabolite production and metal tolerance of dark septate endophytes isolated from metal-polluted poplar phytomanagement sites. FEMS Microbiol Ecol 2016; 92:fiw144. [PMID: 27364359 DOI: 10.1093/femsec/fiw144] [Citation(s) in RCA: 67] [Impact Index Per Article: 8.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 06/21/2016] [Indexed: 02/07/2023] Open
Abstract
Numerous studies address the distribution and the diversity of dark septate endophytes (DSEs) in the literature, but little is known about their ecological role and their effect on host plants, especially in metal-polluted soils. Seven DSE strains belonging to Cadophora, Leptodontidium, Phialophora and Phialocephala were isolated from roots of poplar trees from metal-polluted sites. All strains developed on a wide range of carbohydrates, including cell-wall-related compounds. The strains evenly colonized birch, eucalyptus and ryegrass roots in re-synthesis experiments. Root and shoot growth promotion was observed and was both plant and strain dependent. Two Phialophora and Leptodontidium strains particularly improved plant growth. However, there was no correlation between the level of root colonization by DSEs and the intensity of growth promotion. All strains produced auxin and six also stimulated plant growth through the release of volatile organic compounds (VOCs). SPME-GC/MS analyses revealed four major VOCs emitted by Cadophora and Leptodontidium The strains exhibited growth at high concentrations of several metals. The ability of metal-resistant DSE strains to produce both soluble and volatile compounds for plant growth promotion indicates interesting microbial resources with high potential to support sustainable production of bioenergy crops within the context of the phytomanagement of metal-contaminated sites.
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Affiliation(s)
- Charlotte Berthelot
- CNRS, LIEC UMR7360, Faculté des Sciences et Technologies, Université de Lorraine, BP 70239, F-54506 Vandoeuvre-lès-Nancy, France LIEC UMR7360, Faculté des Sciences et Technologies, Université de Lorraine, BP 70239, F-54506 Vandoeuvre-lès-Nancy, France
| | - Corinne Leyval
- CNRS, LIEC UMR7360, Faculté des Sciences et Technologies, Université de Lorraine, BP 70239, F-54506 Vandoeuvre-lès-Nancy, France LIEC UMR7360, Faculté des Sciences et Technologies, Université de Lorraine, BP 70239, F-54506 Vandoeuvre-lès-Nancy, France
| | - Julie Foulon
- CNRS, UMR6249 Laboratoire Chrono-Environnement, Pôle Universitaire du Pays de Montbéliard, 4 place Tharradin, BP 71427, F-25211, Montbéliard, France UMR6249 Laboratoire Chrono-Environnement, Université de Bourgogne Franche-Comté, Pôle Universitaire du Pays de Montbéliard, 4 place Tharradin, BP 71427, F-25211, Montbéliard, France
| | - Michel Chalot
- CNRS, UMR6249 Laboratoire Chrono-Environnement, Pôle Universitaire du Pays de Montbéliard, 4 place Tharradin, BP 71427, F-25211, Montbéliard, France UMR6249 Laboratoire Chrono-Environnement, Université de Bourgogne Franche-Comté, Pôle Universitaire du Pays de Montbéliard, 4 place Tharradin, BP 71427, F-25211, Montbéliard, France Faculté des Sciences et Technologies, Université de Lorraine, BP 70239, F-54506, Vandoeuvre-lès-Nancy, France
| | - Damien Blaudez
- CNRS, LIEC UMR7360, Faculté des Sciences et Technologies, Université de Lorraine, BP 70239, F-54506 Vandoeuvre-lès-Nancy, France LIEC UMR7360, Faculté des Sciences et Technologies, Université de Lorraine, BP 70239, F-54506 Vandoeuvre-lès-Nancy, France
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30
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Abstract
A new genus, Acidomelania, is described based on molecular phylogenetic analyses and ecological and morphological characters. Isolated from switchgrass roots in acidic and oligotrophic New Jersey pine barrens in this study, Acidomelania likely has a global distribution because its internal transcribed spacer (ITS) sequence has high similarity with a number of GenBank sequences resulted from various ecological studies. Apparently these samples all were from roots of plants that lived in acidic, nutrient-poor environments. Phylogenetic analyses based on ITS, LSU and ACT sequence data strongly supported the fact that Acidomelania isolates formed a monophyletic clade in Helotiales, distinct from any known taxa. Phylogenetically Acidomelania is closely related to Loramyces, Mollisia and Phialocephala fortinii, Acephala applanata species complex (PAC), the dark septate endophytes. Acidomelania also can be distinguished from Loramyces and Mollisia by its association with living grass roots. While taxa in PAC also are root endophytes, they have more complex phialid arrangement than Acidomelania. Results from this work will facilitate ecological and evolutionary studies on root-associated fungi.
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Affiliation(s)
- Emily Walsh
- Department of Plant Biology and Pathology, 201 Foran Hall, 59 Dudley Road, and Department of Biochemistry and Microbiology, 76 Lipman Drive, Rutgers University, New Brunswick, New Jersey 08901
| | - Jing Luo
- Department of Plant Biology and Pathology, 201 Foran Hall, 59 Dudley Road, and Department of Biochemistry and Microbiology, 76 Lipman Drive, Rutgers University, New Brunswick, New Jersey 08901
| | - Ning Zhang
- Department of Plant Biology and Pathology, 201 Foran Hall, 59 Dudley Road, and Department of Biochemistry and Microbiology, 76 Lipman Drive, Rutgers University, New Brunswick, New Jersey 08901
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31
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Abstract
While direct plant responses to global change have been well characterized, indirect plant responses to global change, via altered species interactions, have received less attention. Here, we examined how plants associated with four classes of fungal symbionts (class I leaf endophytes [EF], arbuscular mycorrhizal fungi [AMF], ectomycorrhizal fungi [ECM], and dark septate endophytes [DSE]) responded to four global change factors (enriched CO2, drought, N deposition, and warming). We performed a meta-analysis of 434 studies spanning 174 publications to search for generalizable trends in responses of plant-fungal symbioses to future environments. Specifically, we addressed the following questions: (1) Can fungal symbionts ameliorate responses of plants to global change? (2) Do fungal symbiont groups differ in the degree to which they modify plant response to global change? (3) Do particular global change factors affect plant-fungal symbioses more than others? In all global change scenarios, except elevated CO2, fungal symbionts significantly altered plant responses to global change. In most cases, fungal symbionts increased plant biomass in response to global change. However, increased N deposition reduced the benefits of symbiosis. Of the global change factors we considered, drought and N deposition resulted in the strongest fungal mediation of plant responses. Our analysis highlighted gaps in current knowledge for responses of particular fungal groups and revealed the importance of considering not only the nonadditive effects of multiple global change factors, but also the interactive effects of multiple fungal symbioses. Our results show that considering plant-fungal symbioses is critical to predicting ecosystem response to global change.
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Affiliation(s)
- Stephanie N Kivlin
- Section of Integrative Biology, University of Texas at Austin, Austin, Texas 78712, USA.
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32
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Toju H, Yamamoto S, Sato H, Tanabe AS, Gilbert GS, Kadowaki K. Community composition of root-associated fungi in a Quercus-dominated temperate forest: "codominance" of mycorrhizal and root-endophytic fungi. Ecol Evol 2013; 3:1281-93. [PMID: 23762515 PMCID: PMC3678483 DOI: 10.1002/ece3.546] [Citation(s) in RCA: 96] [Impact Index Per Article: 8.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/04/2013] [Accepted: 03/09/2013] [Indexed: 12/05/2022] Open
Abstract
In terrestrial ecosystems, plant roots are colonized by various clades of mycorrhizal and endophytic fungi. Focused on the root systems of an oak-dominated temperate forest in Japan, we used 454 pyrosequencing to explore how phylogenetically diverse fungi constitute an ecological community of multiple ecotypes. In total, 345 operational taxonomic units (OTUs) of fungi were found from 159 terminal-root samples from 12 plant species occurring in the forest. Due to the dominance of an oak species (Quercus serrata), diverse ectomycorrhizal clades such as Russula, Lactarius, Cortinarius, Tomentella, Amanita, Boletus, and Cenococcum were observed. Unexpectedly, the root-associated fungal community was dominated by root-endophytic ascomycetes in Helotiales, Chaetothyriales, and Rhytismatales. Overall, 55.3% of root samples were colonized by both the commonly observed ascomycetes and ectomycorrhizal fungi; 75.0% of the root samples of the dominant Q. serrata were so cocolonized. Overall, this study revealed that root-associated fungal communities of oak-dominated temperate forests were dominated not only by ectomycorrhizal fungi but also by diverse root endophytes and that potential ecological interactions between the two ecotypes may be important to understand the complex assembly processes of belowground fungal communities.
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Affiliation(s)
- Hirokazu Toju
- Graduate School of Global Environmental Studies, Kyoto UniversitySakyo, Kyoto, 606-8501, Japan
- Graduate School of Human and Environmental Studies, Kyoto UniversitySakyo, Kyoto, 606-8501, Japan
| | - Satoshi Yamamoto
- Graduate School of Global Environmental Studies, Kyoto UniversitySakyo, Kyoto, 606-8501, Japan
| | - Hirotoshi Sato
- Graduate School of Global Environmental Studies, Kyoto UniversitySakyo, Kyoto, 606-8501, Japan
| | - Akifumi S Tanabe
- Graduate School of Global Environmental Studies, Kyoto UniversitySakyo, Kyoto, 606-8501, Japan
- National Research Institute of Fisheries Science, Fisheries Research AgencyFukuura, Kanazawa, Yokohama, Kanagawa, 236-8648, Japan
| | - Gregory S Gilbert
- Environmental Studies Department, University of CaliforniaSanta Cruz, California, 95064
| | - Kohmei Kadowaki
- Graduate School of Global Environmental Studies, Kyoto UniversitySakyo, Kyoto, 606-8501, Japan
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