1
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Nakazawa H, Okada I, Ito T, Ishigaki Y, Kumagai I, Umetsu M. Combinatorial optimization of the hybrid cellulase complex structure designed from modular libraries. Sci Rep 2024; 14:22429. [PMID: 39342015 PMCID: PMC11438973 DOI: 10.1038/s41598-024-73541-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/08/2023] [Accepted: 09/18/2024] [Indexed: 10/01/2024] Open
Abstract
Cellulase selectively recognizes cellulose surfaces and cleaves their β-1,4-glycosidic bonds. Combining hydrolysis using cellulase and fermentation can produce alternative fuels and chemical products. However, anaerobic bacteria produce only low levels of highly active cellulase complexes so-called cellulosomes. Therefore, we designed hybrid cellulase complexes from 49 biotinylated catalytic domain (CD) and 30 biotinylated cellulose-binding domain (CBD) libraries on streptavidin-conjugated nanoparticles to enhance cellulose hydrolysis by mimicking the cellulosome structure. The hybrid cellulase complex, incorporating both native CD and CBD, significantly improved reducing sugar production from cellulose compared to free native modular enzymes. The optimal CBD for each hybrid cellulase complex differed from that of the native enzyme. The most effective hybrid cellulase complex was observed with the combination of CD6-4 from Thermobifida fusca YX and CBD46 from the Bacillus halodurans C-125. The hybrid cellulase complex/CD6-4-CBD46 and -CD6-4-CBD2-5 combinations showed increased reducing sugar production. Similar results were also observed in microcrystalline cellulose degradation. Furthermore, clustering on nanoparticles enhanced enzyme thermostability. Our results demonstrate that hybrid cellulase complex structures improve enzyme function through synergistic effects and extend the lifespan of the enzyme.
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Affiliation(s)
- Hikaru Nakazawa
- Department of Biomolecular Engineering, Graduate School of Engineering, Tohoku University, Aoba 6-6-1, Aramaki, Aoba-Ku, Sendai, 980-8579, Japan.
| | - Izumi Okada
- Department of Biomolecular Engineering, Graduate School of Engineering, Tohoku University, Aoba 6-6-1, Aramaki, Aoba-Ku, Sendai, 980-8579, Japan
| | - Tomoyuki Ito
- Department of Biomolecular Engineering, Graduate School of Engineering, Tohoku University, Aoba 6-6-1, Aramaki, Aoba-Ku, Sendai, 980-8579, Japan
| | - Yuri Ishigaki
- Department of Biomolecular Engineering, Graduate School of Engineering, Tohoku University, Aoba 6-6-1, Aramaki, Aoba-Ku, Sendai, 980-8579, Japan
| | - Izumi Kumagai
- Department of Biomolecular Engineering, Graduate School of Engineering, Tohoku University, Aoba 6-6-1, Aramaki, Aoba-Ku, Sendai, 980-8579, Japan
| | - Mitsuo Umetsu
- Department of Biomolecular Engineering, Graduate School of Engineering, Tohoku University, Aoba 6-6-1, Aramaki, Aoba-Ku, Sendai, 980-8579, Japan.
- Center for Advanced Intelligence Project, RIKEN, Tokyo, Japan.
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2
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Jahan K, Supty MSA, Lee JS, Choi KH. Transcriptomic Analysis Provides New Insights into the Tolerance Mechanisms of Green Macroalgae Ulva prolifera to High Temperature and Light Stress. BIOLOGY 2024; 13:725. [PMID: 39336152 PMCID: PMC11428574 DOI: 10.3390/biology13090725] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/08/2024] [Revised: 09/13/2024] [Accepted: 09/14/2024] [Indexed: 09/30/2024]
Abstract
Our research focused on understanding the genetic mechanisms that contribute to the tolerance of Ulva prolifera (Chlorophyta), a marine macroalgae, to the combined stress of high temperature and high light intensity. At the mRNA level, the up-regulated DEGs showed enrichment in pathways related to ribosomes, proteasomes, and peroxisomes. The spliceosome pathway genes were found to be vital for U. prolifera's ability to adapt to various challenging situations in all the comparison groups. In response to elevated temperature and light intensity stress, there was a significant increase in genes and pathways related to ribosomes, proteasomes, and peroxisomes, whereas autophagy showed an increase in response to stress after 24 h, but not after 48 h. These findings provide novel insights into how U. prolifera adapts to elevated temperature and light stress.
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Affiliation(s)
| | | | | | - Keun-Hyung Choi
- Department of Earth, Environmental and Space Sciences, Chungnam National University, 99 Daehak-ro, Yusung-gu, Daejeon 34134, Republic of Korea; (K.J.)
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3
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Revankar AG, Bagewadi ZK, Bochageri NP, Yunus Khan T, Mohamed Shamsudeen S. Response surface methodology based optimization of keratinase from Bacillus velezensis strain ZBE1 and nanoparticle synthesis, biological and molecular characterization. Saudi J Biol Sci 2023; 30:103787. [PMID: 37705700 PMCID: PMC10495650 DOI: 10.1016/j.sjbs.2023.103787] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/17/2023] [Revised: 08/11/2023] [Accepted: 08/18/2023] [Indexed: 09/15/2023] Open
Abstract
The increasing demands of keratinases for biodegradation of recalcitrant keratinaceous waste like chicken feathers has lead to research on newer potential bacterial keratinases to produce high-value products with biological activities. The present study reports a novel keratinolytic bacterium Bacillus velezensis strain ZBE1 isolated from deep forest soil of Western Ghats of Karnataka, which possessed efficient feather keratin degradation capability and induced keratinase production. Production kinetics depicts maximum keratinase production (11.65 U/mL) on 4th day with protein concentration of 0.61 mg/mL. Effect of various physico-chemical factors such as, inoculum size, metal ions, carbon and nitrogen sources, pH and temperature influencing keratinase production were optimized and 3.74 folds enhancement was evidenced through response surface methodology. Silver (AgNP) and zinc oxide (ZnONP) nanoparticles with keratin hydrolysate produced from chicken feathers by the action of keratinase were synthesized and verified with UV-Visible spectroscopy that revealed biological activities like, antibacterial action against Bacillus cereus and Escherichia coli. AgNP and ZnONP also showed potential antioxidant activities through radical scavenging activities by ABTS and DPPH. AgNP and ZnONP revealed cytotoxic effect against MCF-7 breast cancer cell lines with IC50 of 5.47 µg/ml and 62.26 µg/ml respectively. Characterizations of nanoparticles were carried out by Fourier transform infrared spectroscopy, scanning electron microscopy with energy dispersive X-ray, X-ray diffraction, thermogravimetric analysis and atomic force microscopy analysis to elucidate the thermostability, structure and surface attributes. The study suggests the prospective applications of keratinase to trigger the production of bioactive value-added products and significant application in nanotechnology in biomedicine.
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Affiliation(s)
- Archana G. Revankar
- Department of Biotechnology, KLE Technological University, Hubballi, Karnataka 580031, India
| | - Zabin K. Bagewadi
- Department of Biotechnology, KLE Technological University, Hubballi, Karnataka 580031, India
| | - Neha P. Bochageri
- Department of Biotechnology, KLE Technological University, Hubballi, Karnataka 580031, India
| | - T.M. Yunus Khan
- Department of Mechanical Engineering, College of Engineering, King Khalid University, Abha 61421, Saudi Arabia
| | - Shaik Mohamed Shamsudeen
- Department of Diagnostic dental science and Oral Biology, College of Dentistry, King Khalid University, Abha 61421, Saudi Arabia
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4
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Kyomuhimbo HD, Feleni U, Haneklaus NH, Brink H. Recent Advances in Applications of Oxidases and Peroxidases Polymer-Based Enzyme Biocatalysts in Sensing and Wastewater Treatment: A Review. Polymers (Basel) 2023; 15:3492. [PMID: 37631549 PMCID: PMC10460086 DOI: 10.3390/polym15163492] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/29/2023] [Revised: 08/10/2023] [Accepted: 08/17/2023] [Indexed: 08/27/2023] Open
Abstract
Oxidase and peroxidase enzymes have attracted attention in various biotechnological industries due to their ease of synthesis, wide range of applications, and operation under mild conditions. Their applicability, however, is limited by their poor stability in harsher conditions and their non-reusability. As a result, several approaches such as enzyme engineering, medium engineering, and enzyme immobilization have been used to improve the enzyme properties. Several materials have been used as supports for these enzymes to increase their stability and reusability. This review focusses on the immobilization of oxidase and peroxidase enzymes on metal and metal oxide nanoparticle-polymer composite supports and the different methods used to achieve the immobilization. The application of the enzyme-metal/metal oxide-polymer biocatalysts in biosensing of hydrogen peroxide, glucose, pesticides, and herbicides as well as blood components such as cholesterol, urea, dopamine, and xanthine have been extensively reviewed. The application of the biocatalysts in wastewater treatment through degradation of dyes, pesticides, and other organic compounds has also been discussed.
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Affiliation(s)
- Hilda Dinah Kyomuhimbo
- Department of Chemical Engineering, University of Pretoria, Pretoria 0028, South Africa;
| | - Usisipho Feleni
- Institute for Nanotechnology and Water Sustainability (iNanoWS), College of Science, Engineering and Technology, University of South Africa, Florida Campus, Roodepoort, Johannesburg 1710, South Africa;
| | - Nils H. Haneklaus
- Transdisciplinarity Laboratory Sustainable Mineral Resources, University for Continuing Education Krems, 3500 Krems, Austria;
| | - Hendrik Brink
- Department of Chemical Engineering, University of Pretoria, Pretoria 0028, South Africa;
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5
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Meng X, Zong H, Zheng Z, Xing J, Liu Z, Song F, Liu S. Ligand-targeted fishing of α-glucosidase inhibitors from Tribulus terrestris L. based on chitosan-functionalized multi-walled carbon nanotubes with immobilized α-glucosidase. Anal Bioanal Chem 2023; 415:2677-2692. [PMID: 37058167 DOI: 10.1007/s00216-023-04666-y] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/17/2023] [Revised: 02/21/2023] [Accepted: 03/21/2023] [Indexed: 04/15/2023]
Abstract
α-Glucosidase inhibitors in natural products are one of the promising drugs for the treatment of type 2 diabetes. However, due to the complexity of the matrix, it is challenging to comprehensibly clarify the specific pharmacodynamic substances. In this study, a novel high-throughput inhibitor screening strategy was established based on covalent binding of α-glucosidase on chitosan-functionalized multi-walled carbon nanotubes coupled with high-resolution mass spectrometry. The synthesized MWCNTs@CS@GA@α-Glu was characterized by TEM, SEM, FTIR, Raman, and TG. Performance studies showed that the microreactor exhibited stronger thermostability and pH tolerance than that of the free one while maintaining its inherent catalytic activity. Feasibility study applying a model mixture of known α-glucosidase ligand and non-ligands indicated the selectivity and specificity of the system. By integrating ultra-high-performance liquid chromatography-tandem mass spectrometry (UHPLC-QTOF-MS) with ion mobility mass spectrometry (IMS), 15 ligands were obtained and tentatively identified from Tribulus terrestris L., including 8 steroidal saponins, 4 flavonoids, and 3 alkaloids. These inhibitors were further validated by in vivo experiments and molecular docking simulation.
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Affiliation(s)
- Xin Meng
- State Key Laboratory of Electroanalytical Chemistry, National Center of Mass Spectrometry in Changchun and Jilin Province Key Laboratory of Chinese Medicine Chemistry and Mass Spectrometry, Changchun Institute of Applied Chemistry, Chinese Academy of Sciences, Changchun, 130022, China
- School of Applied Chemistry and Engineering, University of Science and Technology of China, Hefei, 230026, China
| | - Hou Zong
- State Key Laboratory of Electroanalytical Chemistry, National Center of Mass Spectrometry in Changchun and Jilin Province Key Laboratory of Chinese Medicine Chemistry and Mass Spectrometry, Changchun Institute of Applied Chemistry, Chinese Academy of Sciences, Changchun, 130022, China
| | - Zhong Zheng
- State Key Laboratory of Electroanalytical Chemistry, National Center of Mass Spectrometry in Changchun and Jilin Province Key Laboratory of Chinese Medicine Chemistry and Mass Spectrometry, Changchun Institute of Applied Chemistry, Chinese Academy of Sciences, Changchun, 130022, China
| | - Junpeng Xing
- State Key Laboratory of Electroanalytical Chemistry, National Center of Mass Spectrometry in Changchun and Jilin Province Key Laboratory of Chinese Medicine Chemistry and Mass Spectrometry, Changchun Institute of Applied Chemistry, Chinese Academy of Sciences, Changchun, 130022, China
| | - Zhiqiang Liu
- State Key Laboratory of Electroanalytical Chemistry, National Center of Mass Spectrometry in Changchun and Jilin Province Key Laboratory of Chinese Medicine Chemistry and Mass Spectrometry, Changchun Institute of Applied Chemistry, Chinese Academy of Sciences, Changchun, 130022, China
| | - Fengrui Song
- State Key Laboratory of Electroanalytical Chemistry, National Center of Mass Spectrometry in Changchun and Jilin Province Key Laboratory of Chinese Medicine Chemistry and Mass Spectrometry, Changchun Institute of Applied Chemistry, Chinese Academy of Sciences, Changchun, 130022, China
- School of Applied Chemistry and Engineering, University of Science and Technology of China, Hefei, 230026, China
| | - Shu Liu
- State Key Laboratory of Electroanalytical Chemistry, National Center of Mass Spectrometry in Changchun and Jilin Province Key Laboratory of Chinese Medicine Chemistry and Mass Spectrometry, Changchun Institute of Applied Chemistry, Chinese Academy of Sciences, Changchun, 130022, China.
- School of Applied Chemistry and Engineering, University of Science and Technology of China, Hefei, 230026, China.
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6
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Tang Y, Wang P, Zeng H, Rui Z. Construction of porous chitosan macrospheres via dual pore-forming strategy as host for alkaline protease immobilization with high activity and stability. Carbohydr Polym 2023; 305:120476. [PMID: 36737178 DOI: 10.1016/j.carbpol.2022.120476] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/02/2022] [Revised: 12/06/2022] [Accepted: 12/14/2022] [Indexed: 12/23/2022]
Abstract
Fabrication of highly-efficient enzymatic supports having excellent affinity to enzymes and superior mass transfer properties is highly desirable for enzymatic bio-catalysis. Herein, newly engineered chitosan macrospheres having interconnected and interlaced network pores are prepared via dual pore-forming strategy and applied as novel host for the effective immobilization of alkaline protease. The synergetic effect of SiO2 templates and gas-induced pore-forming agents play an important role in inhibiting the over-crosslinking of chitosan chains and promoting the elevation of interior porosity. Benefited from the highly exposed surface and abundant available binding sites, the as-developed porous support P2CSM achieves a maximum loading capacity of 43.8 ± 0.8 mg/g and ultra-high activity recovery of 92.4 % for alkaline protease. P2CSM is competent to effectively stabilize the structural conformation of alkaline protease from inactivation through the flexible covalent interaction. Considering these attributes, Protease@P2CSM demonstrates remarkably better structural stability, reusability and SDS-resistance than free alkaline protease, as well as excellent proteolytic ability, and the residual activity of Protease@P2CSM is evaluated as high as 70.3 % after 7 consecutive reuses. This work provides a promising avenue to construct highly-active enzyme-composites for widespread utilization in various practical applications.
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Affiliation(s)
- Ying Tang
- School of Chemical Engineering and Technology, Guangdong Engineering Technology Research Center for Platform Chemicals from Marine Biomass and their Functionalization, Sun Yat-sen University, Zhuhai 519082, China
| | - Penghui Wang
- School of Chemical Engineering and Technology, Guangdong Engineering Technology Research Center for Platform Chemicals from Marine Biomass and their Functionalization, Sun Yat-sen University, Zhuhai 519082, China
| | - Hui Zeng
- School of Chemical Engineering and Technology, Guangdong Engineering Technology Research Center for Platform Chemicals from Marine Biomass and their Functionalization, Sun Yat-sen University, Zhuhai 519082, China; Guangdong Provincial Engineering Technology Research Center of Concentrated Detergents, Foshan 528244, China.
| | - Zebao Rui
- School of Chemical Engineering and Technology, Guangdong Engineering Technology Research Center for Platform Chemicals from Marine Biomass and their Functionalization, Sun Yat-sen University, Zhuhai 519082, China.
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7
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Li Q, Armstrong Z, MacRae A, Ugrinov A, Feng L, Chen B, Huang Y, Li H, Pan Y, Yang Z. Metal-Organic Materials (MOMs) Enhance Proteolytic Selectivity, Efficiency, and Reusability of Trypsin: A Time-Resolved Study on Proteolysis. ACS APPLIED MATERIALS & INTERFACES 2023; 15:8927-8936. [PMID: 36757369 DOI: 10.1021/acsami.2c19873] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/18/2023]
Abstract
Proteases are involved in essential biological functions in nature and have become drug targets recently. In spite of the promising progress, two challenges, (i) the intrinsic instability and (ii) the difficulty in monitoring the catalytic process in real time, still hinder the further understanding and engineering of protease functionalities. These challenges are caused by the lack of proper materials/approaches to stabilize proteases and monitor proteolytic products (truncated polypeptides) in real time in a highly heterogeneous reaction mixture. This work combines metal-organic materials (MOMs), site-directed spin labeling-electron paramagnetic resonance (SDSL-EPR) spectroscopy, and mass spectrometry (MS) to overcome both barriers. A model protease, trypsin, which cleaves the peptide bonds at lysine or arginine residues, was immobilized on a Ca-MOM via aqueous-phase, one-pot cocrystallization, which allows for trypsin protection and ease of separation from its proteolytic products. Time-resolved EPR and MS were employed to monitor the populations, rotational motion, and sequences of the cleaved peptide truncations of a model protein substrate as the reaction proceeded. Our data suggest a significant (at least 5-10 times) enhancement in the catalytic efficiency (kcat/km) of trypsin@Ca-MOM and excellent reusability as compared to free trypsin in solution. Surprisingly, entrapping trypsin in Ca-MOMs results in cleavage site/region selectivity against the protein substrate, as compared to the near nonselective cleavage of all lysine and arginine residues of the substrate in solution. Remarkably, immobilizing trypsin allows for the separation and, thus, MS study on the sequences of truncated peptides in real time, leading to a time-resolved "movie" of trypsin proteolysis. This work demonstrates the use of MOMs and cocrystallization to enhance the selectivity, catalytic efficiency, and stability of trypsin, suggesting the possibility of tuning the catalytic performance of a general protease using MOMs.
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Affiliation(s)
- Qiaobin Li
- Department of Chemistry and Biochemistry, North Dakota State University, Fargo, North Dakota 58102, United States
| | - Zoe Armstrong
- Department of Chemistry and Biochemistry, North Dakota State University, Fargo, North Dakota 58102, United States
| | - Austin MacRae
- Department of Chemistry and Biochemistry, North Dakota State University, Fargo, North Dakota 58102, United States
| | - Angel Ugrinov
- Department of Chemistry and Biochemistry, North Dakota State University, Fargo, North Dakota 58102, United States
| | - Li Feng
- Department of Chemistry and Biochemistry, North Dakota State University, Fargo, North Dakota 58102, United States
| | - Bingcan Chen
- Department of Plant Sciences, North Dakota State University, Fargo, North Dakota 58102, United States
| | - Ying Huang
- Department of Civil, Construction, and Environmental Engineering, North Dakota State University, Fargo, North Dakota 58102, United States
| | - Hui Li
- Department of Plant Sciences, North Dakota State University, Fargo, North Dakota 58102, United States
| | - Yanxiong Pan
- State Key Laboratory of Polymer Physics and Chemistry, Changchun Institute of Applied Chemistry, Changchun 130022, China
| | - Zhongyu Yang
- Department of Chemistry and Biochemistry, North Dakota State University, Fargo, North Dakota 58102, United States
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8
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Ansari SA, Damanhory AA. Biotechnological application of Aspergillus oryzae β-galactosidase immobilized on glutaraldehyde modified zinc oxide nanoparticles. Heliyon 2023; 9:e13089. [PMID: 36747522 PMCID: PMC9898663 DOI: 10.1016/j.heliyon.2023.e13089] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/24/2022] [Revised: 01/08/2023] [Accepted: 01/16/2023] [Indexed: 01/24/2023] Open
Abstract
The current research demonstrates the synthesis of zinc oxide nanoparticles (ZnO-NPs) via green nanotechnology approach (Azatirachta indica leaves). The size of the synthesized ZnO-NPs was confirmed as 27 nm by TEM. Glutaraldehyde was used to modify the surface of the developed ZnO-NPs in order to promote covalent binding of Aspergillus oryzae β-galactosidase. Enzyme activity was achieved as 93% on glutaraldehyde modified ZnO-NPs. The immobilized enzyme exhibited significant enhancement in activity under extreme temperature and pH variations, as compared to the soluble β-galactosidase (SβG). It was further observed that the immobilized enzyme retained 58% activity at 5% galactose concentration. However, under similar experimental conditions, SβG showed 27% activity. Reusability of immobilized enzyme revealed that it retained 89% activity even after fifth repeated use, and hence could be recovered easily by centrifugation for repeated use in biotechnological applications. Batch reactor experiment indicates that the immobilized enzyme displayed 81% and 70% lactose hydrolysis at 50 °C and 60 °C, respectively as compared to 70% and 58% lactose hydrolysis by soluble enzyme under identical conditions after 9 h.
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Affiliation(s)
- Shakeel Ahmed Ansari
- Department of Biochemistry, Medicine Program, Batterjee Medical College, Jeddah 21442, Saudi Arabia
| | - Ahmed Abdelghany Damanhory
- Department of Biochemistry, Medicine Program, Batterjee Medical College, Jeddah 21442, Saudi Arabia
- Department of Biochemistry, Faculty of Medicine, Al-Azhar University, Cairo 11651, Egypt
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9
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Navvabi A, Homaei A, Pletschke BI, Navvabi N, Kim SK. Marine Cellulases and their Biotechnological Significance from Industrial Perspectives. Curr Pharm Des 2022; 28:3325-3336. [PMID: 35388747 DOI: 10.2174/1381612828666220406125132] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/07/2021] [Revised: 11/03/2021] [Accepted: 01/18/2022] [Indexed: 01/28/2023]
Abstract
Marine microorganisms represent virtually unlimited sources of novel biological compounds and can survive extreme conditions. Cellulases, a group of enzymes that are able to degrade cellulosic materials, are in high demand in various industrial and biotechnological applications, such as in the medical and pharmaceutical industries, food, fuel, agriculture, and single-cell protein, and as probiotics in aquaculture. The cellulosic biopolymer is a renewable resource and is a linearly arranged polysaccharide of glucose, with repeating units of disaccharide connected via β-1,4-glycosidic bonds, which are broken down by cellulase. A great deal of biodiversity resides in the ocean, and marine systems produce a wide range of distinct, new bioactive compounds that remain available but dormant for many years. The marine environment is filled with biomass from known and unknown vertebrates and invertebrate microorganisms, with much potential for use in medicine and biotechnology. Hence, complex polysaccharides derived from marine sources are a rich resource of microorganisms equipped with enzymes for polysaccharides degradation. Marine cellulases' extracts from the isolates are tested for their functional role in degrading seaweed and modifying wastes to low molecular fragments. They purify and renew environments by eliminating possible feedstocks of pollution. This review aims to examine the various types of marine cellulase producers and assess the ability of these microorganisms to produce these enzymes and their subsequent biotechnological applications.
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Affiliation(s)
- Azita Navvabi
- Department of Marine Biology, Faculty of Marine Science and Technology, University of Hormozgan, Bandar Abbas, Iran
| | - Ahmad Homaei
- Department of Marine Biology, Faculty of Marine Science and Technology, University of Hormozgan, Bandar Abbas, Iran
| | - Brett I Pletschke
- Department of Biochemistry and Microbiology, Rhodes University, Grahamstown, 6140, South Africa
| | - Nazila Navvabi
- Department of Tumor Biology and Immunotherapy, Molecular Biology of Cancer, Institute of Experimental Medicine, Biomedical Center, Faculty of Medicine in Pilsen, Charles University, Prague, Czech Republic
| | - Se-Kwon Kim
- Department of Marine Sciences and Convergent Technology, Hanyang University, Ansan, Seoul 426-791, Republic of Korea
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10
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Izadpanah Qeshmi F, Homaei A, Khajeh K, Kamrani E, Fernandes P. Production of a Novel Marine Pseudomonas aeruginosa Recombinant L-Asparaginase: Insight on the Structure and Biochemical Characterization. MARINE BIOTECHNOLOGY (NEW YORK, N.Y.) 2022; 24:599-613. [PMID: 35507234 DOI: 10.1007/s10126-022-10129-9] [Citation(s) in RCA: 19] [Impact Index Per Article: 9.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/10/2021] [Accepted: 04/22/2022] [Indexed: 06/14/2023]
Abstract
The present study focused on the cloning, expression, and characterization of L-asparaginase of marine Pseudomonas aeruginosa HR03 isolated from fish intestine. Thus, a gene fragment containing the L-asparaginase sequence of Pseudomonas aeruginosa HR03 isolated from the fish intestine was cloned in the pET21a vector and then expressed in Escherichia coli BL21 (DE3) cells. Thereafter, the recombinant L-asparaginase (HR03Asnase) was purified by nickel affinity chromatography, and the enzymatic properties of HR03Asnase, including the effects of pH and temperature on HR03Asnase activity and its kinetic parameters, were determined. The recombinant enzyme HR03Asnase showed the highest similarity to type I L-asparaginase from Pseudomonas aeruginosa. The three-dimensional (3D) modeling results indicate that HR03Asnase exists as a homotetramer. Its molecular weight was 35 kDa, and the maximum activity of the purified enzyme was observed at pH8 and at 40 °C. The km and Vmax of the enzyme obtained with L-asparagine as substrate were 10.904 mM and 3.44 × 10-2 mM/min, respectively. The maximum activity of HR03Asnase was reduced by 50% at 90 °C after 10-min incubation; however, the enzyme maintained more than 20% of its activity after 30-min incubation. This enzyme also maintained almost 50% of its activity at pH 12 after 40-min incubation. The evaluation of pH and temperature stability of HR03Asnase showed that the enzyme has a wide range of activity, which is a suitable characteristic for its application in different industries. Overall, the results of the present study indicate that marine sources are promising biological reservoirs for enzymes to be used for biotechnological purposes, and marine thermostable HR03Asnase is likely a potential candidate for its future usage in the pharmaceutical and food industries.
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Affiliation(s)
- Fatemeh Izadpanah Qeshmi
- Department of Marine Biology, Faculty of Marine Science and Technology, University of Hormozgan, P.O. Box 3995, Bandar Abbas, Iran
| | - Ahmad Homaei
- Department of Marine Biology, Faculty of Marine Science and Technology, University of Hormozgan, P.O. Box 3995, Bandar Abbas, Iran.
| | - Khosro Khajeh
- Department of Biochemistry, Faculty of Biological Sciences, Tarbiat Modares University, Tehran, Iran
| | - Ehsan Kamrani
- Fisheries Department, Faculty of Marine Science and Technology, University of Hormozgan, Bandar Abbas, Iran
| | - Pedro Fernandes
- Department of Bioengineering and IBB-Institute for Bioengineering and Biosciences, Instituto Superior Técnico, Universidade de Lisboa, Av. Rovisco Pais, 1049-001, Lisbon, Portugal
- Associate Laboratory i4HB-Institute for Health and Bioeconomy at Instituto Superior Técnico, Universidade de Lisboa, Av. Rovisco Pais, 1049-001, Lisbon, Portugal
- DREAMS and Faculty of Engineering, Universidade Lusófona de Humanidades E Tecnologias, Av. Campo Grande 376, 1749-024, Lisbon, Portugal
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11
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Aggarwal S, Ikram S. Zinc oxide nanoparticles-impregnated chitosan surfaces for covalent immobilization of trypsin: Stability & kinetic studies. Int J Biol Macromol 2022; 207:205-221. [PMID: 35259431 DOI: 10.1016/j.ijbiomac.2022.03.014] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/26/2021] [Revised: 01/31/2022] [Accepted: 03/03/2022] [Indexed: 11/25/2022]
Abstract
Trypsin (Try, EC. 3.4.21.4) was effectively immobilized on the surface of glutaraldehyde(GA)-activated ZnO/Chitosan nanocomposite through covalent attachment via Schiff-base linkages. Size, structure, surface morphology, & percentage elemental composition of the prepared ZnO nanoparticles and chitosan-coated ZnO nanocomposite were studied by UV-Visible spectroscopy, Fourier-transform infrared spectroscopy (FTIR), X-Ray diffraction analysis (XRD), transmission electron microscopy (TEM), Scanning electron microscopy (SEM), and Energy-Dispersive X-Ray Microanalysis (EDAX) techniques. Optimal immobilization conditions (incubation time (16 h), enzyme concentration (1.8 mg/ml), and pH (7.8)) were investigated to obtain the maximum expressed activity of the immobilized trypsin. Immobilized & solubilized trypsin exhibited the optimum catalytic activity at pH 8.5, 60 °C, and pH 7.8, 45 °C respectively. Kinetic parameters (Km, Vmax) of immobilized (27.12 μM, 8.82 μM/min) & free trypsin (25.76 μM, 4.16 μM/min) were determined, indicating that efficiency of trypsin improves after immobilization. Immobilized trypsin preserved 67% of initial activity at 50 °C during 2 h of incubation & sustained nearly 50% of catalytic activity until the 9th repeated cycle of utilization. Moreover, immobilized trypsin retained 50% of enzymatic activity after 90 days of storage at 4 °C. Hence, the current findings suggest that ZnO/Chitosan-GA-Trypsin would be a promising biocatalyst for large-scale biotechnological applications.
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Affiliation(s)
- Shalu Aggarwal
- Bio/Polymers Research Laboratory, Department of Chemistry, Faculty of Natural Sciences, Jamia Millia Islamia, New Delhi 110025, India
| | - Saiqa Ikram
- Bio/Polymers Research Laboratory, Department of Chemistry, Faculty of Natural Sciences, Jamia Millia Islamia, New Delhi 110025, India.
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12
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Razzaghi M, Homaei A, Vianello F, Azad T, Sharma T, Nadda AK, Stevanato R, Bilal M, Iqbal HMN. Industrial applications of immobilized nano-biocatalysts. Bioprocess Biosyst Eng 2022; 45:237-256. [PMID: 34596787 DOI: 10.1007/s00449-021-02647-y] [Citation(s) in RCA: 24] [Impact Index Per Article: 12.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/07/2021] [Accepted: 09/24/2021] [Indexed: 02/05/2023]
Abstract
Immobilized enzyme-based catalytic constructs could greatly improve various industrial processes due to their extraordinary catalytic activity and reaction specificity. In recent decades, nano-enzymes, defined as enzyme immobilized on nanomaterials, gained popularity for the enzymes' improved stability, reusability, and ease of separation from the biocatalytic process. Thus, enzymes can be strategically incorporated into nanostructured materials to engineer nano-enzymes, such as nanoporous particles, nanofibers, nanoflowers, nanogels, nanomembranes, metal-organic frameworks, multi-walled or single-walled carbon nanotubes, and nanoparticles with tuned shape and size. Surface-area-to-volume ratio, pore-volume, chemical compositions, electrical charge or conductivity of nanomaterials, protein charge, hydrophobicity, and amino acid composition on protein surface play fundamental roles in the nano-enzyme preparation and catalytic properties. With proper understanding, the optimization of the above-mentioned factors will lead to favorable micro-environments for biocatalysts of industrial relevance. Thus, the application of nano-enzymes promise to further strengthen the advances in catalysis, biotransformation, biosensing, and biomarker discovery. Herein, this review article spotlights recent progress in nano-enzyme development and their possible implementation in different areas, including biomedicine, biosensors, bioremediation of industrial pollutants, biofuel production, textile, leather, detergent, food industries and antifouling.
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Affiliation(s)
- Mozhgan Razzaghi
- Department of Marine Biology, Faculty of Marine Science and Technology, University of Hormozgan, P.O. Box 3995, Bandar Abbas, Iran
| | - Ahmad Homaei
- Department of Marine Biology, Faculty of Marine Science and Technology, University of Hormozgan, P.O. Box 3995, Bandar Abbas, Iran.
| | - Fabio Vianello
- Department of Comparative Biomedicine and Food Science, University of Padova, Legnaro, PD, Italy
| | - Taha Azad
- Ottawa Hospital Research Institute, Ottawa, ON, K1H 8L6, Canada
- Department of Biochemistry, Microbiology and Immunology, University of Ottawa, Ottawa, ON, K1H 8M5, Canada
| | - Tanvi Sharma
- Department of Biotechnology and Bioinformatics, Jaypee University of Information Technology, Solan, Waknaghat, India
| | - Ashok Kumar Nadda
- Department of Biotechnology and Bioinformatics, Jaypee University of Information Technology, Solan, Waknaghat, India
| | - Roberto Stevanato
- Department of Molecular Sciences and Nanosystems, University Ca' Foscari of Venice, Venice, Italy
| | - Muhammad Bilal
- School of Life Science and Food Engineering, Huaiyin Institute of Technology, Huaian, 223003, China
| | - Hafiz M N Iqbal
- School of Engineering and Sciences, Tecnologico de Monterrey, 64849, Monterrey, Mexico
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13
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da Silva RTP, Ribeiro de Barros H, Sandrini DMF, Córdoba de Torresi SI. Stimuli-Responsive Regulation of Biocatalysis through Metallic Nanoparticle Interaction. Bioconjug Chem 2022; 33:53-66. [PMID: 34914373 DOI: 10.1021/acs.bioconjchem.1c00515] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Abstract
The remote control of biocatalytic processes in an extracellular medium is an exciting idea to deliver innovative solutions in the biocatalysis field. With this purpose, metallic nanoparticles (NPs) are great candidates, as their inherent thermal, electric, magnetic, and plasmonic properties can readily be manipulated upon external stimuli. Exploring the unique NP properties beyond an anchoring platform for enzymes brings up the opportunity to extend the efficiency of biocatalysts and modulate their activity through triggered events. In this review, we discuss a set of external stimuli, such as light, electricity, magnetism, and temperature, as tools for the regulation of nanobiocatalysis, including the challenges and perspectives regarding their use. In addition, we elaborate on the use of combined stimuli that create a more refined framework in terms of a multiresponsive system. Finally, we envision this review might instigate researchers in this field of study with a set of promising opportunities in the near future.
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Affiliation(s)
- Rafael T P da Silva
- Instituto de Química, Universidade de São Paulo, São Paulo (SP), 05508-000, Brazil
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14
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Nanocarriers-based immobilization of enzymes for industrial application. 3 Biotech 2021; 11:427. [PMID: 34603907 DOI: 10.1007/s13205-021-02953-y] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/06/2021] [Accepted: 07/28/2021] [Indexed: 10/20/2022] Open
Abstract
Nanocarriers-based immobilization strategies are a novel concept in the enhancement of enzyme stability, shelf life and efficiency. A wide range of natural and artificial supports have been assessed for their efficacy in enzyme immobilization. Nanomaterials epitomize unique and fascinating matrices for enzyme immobilization. These structures include carbon nanotubes, superparamagnetic nanoparticles and nanofibers. These nano-based supports offer stable attachment of enzymes, thus ensuring their reusability in diverse industrial applications. This review attempts to encompass recent developments in the critical role played by nanotechnology towards the improvement of the practical applicability of microbial enzymes. Nanoparticles are increasingly being used in combination with various polymers to facilitate enzyme immobilization. These endeavors are proving to be conducive for enzyme-catalyzed industrial operations. In recent years the diversity of nanomaterials has grown tremendously, thus offering endless opportunities in the form of novel combinations for various biotransformation experimentations. These nanocarriers are advantageous for both free enzymes and whole-cell immobilization, thus demonstrating to be relatively effective in several fermentation procedures.
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15
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Katić K, Banjanac K, Simović M, Ćorović M, Milivojević A, Marinković A, Bezbradica D. Development of protease nanobiocatalysts and their application in hydrolysis of sunflower meal protein isolate. Int J Food Sci Technol 2021. [DOI: 10.1111/ijfs.15189] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Katarina Katić
- Institute of Meat Hygiene and Technology Kaćanskog 13 Belgrade 11000 Serbia
| | - Katarina Banjanac
- Innovation Centre of Faculty of Technology and Metallurgy University of Belgrade Karnegijeva 4 Belgrade 11000 Serbia
| | - Milica Simović
- Department of Biochemical Engineering and Biotechnology Faculty of Technology and Metallurgy University of Belgrade Karnegijeva 4 Belgrade 11000 Serbia
| | - Marija Ćorović
- Department of Biochemical Engineering and Biotechnology Faculty of Technology and Metallurgy University of Belgrade Karnegijeva 4 Belgrade 11000 Serbia
| | - Ana Milivojević
- Innovation Centre of Faculty of Technology and Metallurgy University of Belgrade Karnegijeva 4 Belgrade 11000 Serbia
| | - Aleksandar Marinković
- Department of Organic Chemistry Faculty of Technology and Metallurgy University of Belgrade Karnegijeva 4 Belgrade 11000 Serbia
| | - Dejan Bezbradica
- Department of Biochemical Engineering and Biotechnology Faculty of Technology and Metallurgy University of Belgrade Karnegijeva 4 Belgrade 11000 Serbia
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16
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da Silva PL, Nippes RP, Macruz PD, Hegeto FL, Scaliante MHNO. Photocatalytic degradation of hydroxychloroquine using ZnO supported on clinoptilolite zeolite. WATER SCIENCE AND TECHNOLOGY : A JOURNAL OF THE INTERNATIONAL ASSOCIATION ON WATER POLLUTION RESEARCH 2021; 84:763-776. [PMID: 34388133 DOI: 10.2166/wst.2021.265] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/23/2023]
Abstract
The objective of this work was to evaluate the photocatalytic activity of zinc oxide catalysts supported on natural zeolite clinoptilolite for photocatalytic degradation of the drug hydroxychloroquine, used in the treatment of malaria and which has been tested in the treatment of COVID-19. To synthesize 10%ZnOCP and 15%ZnOCP catalysts, the wet impregnation methodology was used. The raw and synthesized catalysts were characterized by XRD, SEM, XRF, BET, DRS, PCZ, FT-IR and PL. The degradation of hydroxychloroquine was calculated using UV-vis absorption from the samples before and after the photocatalytic process. The maximum percentage of degradation (96%) was obtained with the operational parameters of C0 = 10 mg L-1; Ccat = 2 g L-1 of 15%ZnOCP; pH = 7.5; UV-A radiation. Ecotoxicological tests against the bioindicators Lactuca sativa and Artemia salina confirmed the reduction of effluent toxicity after treatment.
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Affiliation(s)
- Patricia Lacchi da Silva
- Department of Chemical Engineering, State University of Maringa, Maringa 87020-900, Parana, Brazil
| | - Ramiro Picoli Nippes
- Department of Chemical Engineering, State University of Maringa, Maringa 87020-900, Parana, Brazil
| | - Paula Derksen Macruz
- Department of Chemical Engineering, State University of Maringa, Maringa 87020-900, Parana, Brazil
| | - Fábio Luís Hegeto
- Physics Department, State University of Maringa, Maringa 87020-900, Parana, Brazil
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17
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Barsan MM, Diculescu VC. An antibody-based amperometric biosensor for 20S proteasome activity and inhibitor screening. Analyst 2021; 146:3216-3224. [PMID: 33999049 DOI: 10.1039/d0an02426k] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
Abstract
The 20S proteasome enzyme complex is involved in the proteolytic degradation of misfolded and oxidatively damaged proteins and is a focus of medical research for the development of compounds with pharmaceutical properties, which are active in cancer cells and/or neurodegenerative diseases. The present study aims to develop a biosensor for investigating the 20S proteasome activity and inhibition by means of electrochemical methods. The 20S proteasome is best immobilized at the electrode surface through bio-affinity interactions with antibodies that target different subunits on the 20S proteasome, enabling the investigation of the effect of an enzyme's orientation on biosensor response. The enzymatic activity is analyzed by fixed potential amperometry with the highest sensitivity of 24 μA cm-2 mM-1 and a LOD of 0.4 μM. The detection principle involves the oxidation of an electroactive probe that is released from the enzyme's substrates upon proteolysis. The most sensitive biosensor is then used to study the multicatalytic activity of the 20S proteasome, i.e. the caspase-, trypsin- and chymotrypsin-like activity, by analyzing the biosensor's sensitivity towards different substrates. The behavior of the immobilized 20S proteasome is investigated as a function of substrate concentration. The kinetic parameters are derived and compared with those obtained when the enzyme was free in solution, with K0.5 values being one to two orders of magnitude lower in the present case. Two 20S inhibitors, epoxomicin and bortezomib, are investigated by analyzing their influence on the 20S biosensor response. The proposed analytical method for proteasome activity and inhibitor screening has the main advantage of being cost-effective compared to the ones typically employed.
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18
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Amani A, Montazer M, Mahmoudirad M. Low starch/corn silk/ZnO as environmentally friendly nanocomposites assembling on PET fabrics. Int J Biol Macromol 2020; 170:780-792. [PMID: 33385458 DOI: 10.1016/j.ijbiomac.2020.12.168] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/31/2020] [Revised: 12/21/2020] [Accepted: 12/22/2020] [Indexed: 02/06/2023]
Abstract
Starch is a benign bio-polymeric material with a diversity of desirable functionalities namely biocompatibility and hydrophilicity features. Besides, corn silk with cellulose-protein structure can be used as an available and clean compound for medical applications. Hence, the advantages of both mentioned biocompatible compounds with potentiality to form hydrogel are considered via their combination. Up to now, there is no report on dealing with starch beside corn silk on polyester fabric in the literatures. Herein, low starch/corn silk dual hydrogel was incorporated into nano ZnO functionalized polyester fabric via a one-step simple method. Imparting flame retardant feature with no dripping, antibacterial/antifungal and self-cleaning activities with the enhanced mechanical characteristics are the advantages of the stated approach in this paper. Presence of dual hydrogel on nano ZnO treated polyester fabric helps to significantly improve the cell viability to 129% because of hydrogel feature. Finally, this paper renders a feasible and clean approach for textile functionalization with respect to the both human health issues and environmental observations.
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Affiliation(s)
- Atefeh Amani
- Textile Department, South Tehran Branch, Islamic Azad University, Tehran, Iran
| | - Majid Montazer
- Textile Engineering Department, Functional Fibrous Structures & Environmental Enhancement (FFSEE), Amirkabir Nanotechnology Research Institute (ANTRI), Amirkabir University of Technology, Tehran, Iran.
| | - Mahnaz Mahmoudirad
- Skin Research Center, Shahid Beheshti University of Medical Sciences, Tehran, Iran
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19
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Naeimi A, Jawhid O, Abbaspour S. The innovative bio-inspired fabrication of the cheap cross-linked cellulose/graphene oxide/ZnO bio-nanopolymer and its high catalytic performance. JOURNAL OF POLYMER RESEARCH 2020. [DOI: 10.1007/s10965-020-02321-z] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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20
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Ashkan Z, Hemmati R, Homaei A, Dinari A, Jamlidoost M, Tashakor A. Immobilization of enzymes on nanoinorganic support materials: An update. Int J Biol Macromol 2020; 168:708-721. [PMID: 33232698 DOI: 10.1016/j.ijbiomac.2020.11.127] [Citation(s) in RCA: 80] [Impact Index Per Article: 20.0] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/10/2020] [Revised: 11/12/2020] [Accepted: 11/18/2020] [Indexed: 10/22/2022]
Abstract
Despite the widespread use in various industries, enzyme's instability and non-reusability limit their applications which can be overcome by immobilization. The nature of the enzyme's support material and method of immobilization affect activity, stability, and kinetics properties of enzymes. Here, we report a comparative study of the effects of inorganic support materials on immobilized enzymes. Accordingly, immobilization of enzymes on nanoinorganic support materials significantly improved thermal and pH stability. Furthermore, immobilizations of enzymes on the materials mainly increased Km values while decreased the Vmax values of enzymes. Immobilized enzymes on nanoinorganic support materials showed the increase in ΔG value, and decrease in both ΔH and ΔS values. In contrast to weak physical adsorption immobilization, covalently-bound and multipoint-attached immobilized enzymes do not release from the support surface to contaminate the product and thus the cost is decreased while the product quality is increased. Nevertheless, nanomaterials can enter the environment and increase health and environmental risks and should be used cautiously. Altogether, it can be predicated that hybrid support materials, directed immobilization methods, site-directed mutagenesis, recombinant fusion protein technology, green nanomaterials and trailor-made supports will be used increasingly to produce more efficient immobilized industrial enzymes in near future.
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Affiliation(s)
- Zahra Ashkan
- Department of Biology, Faculty of Basic Sciences, Shahrekord University, Sharekord, Iran
| | - Roohullah Hemmati
- Department of Biology, Faculty of Basic Sciences, Shahrekord University, Sharekord, Iran; Biotechnology Research Institute, Shahrekord University, Shahrekord, Iran.
| | - Ahmad Homaei
- Department of Marine Biology, Faculty of Marine Science and Technology, University of Hormozgan, Bandar Abbas, Iran
| | - Ali Dinari
- Department of Polymer Engineering, Faculty of Chemical Engineering, Tarbiat Modares University, Iran
| | - Marzieh Jamlidoost
- Department of Virology, Clinical Microbiology Research Center, Namazi Hospital, Shiraz University of Medical Sciences, Iran
| | - Amin Tashakor
- Irish Centre for Vascular Biology, Royal College of Surgeons in Ireland, Dublin 2, Ireland; School of Pharmacy and Bimolecular Sciences, Royal College of Surgeons in Ireland, Dublin 2, Ireland
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21
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Immobilization and stabilization of pectinase on an activated montmorillonite support and its application in pineapple juice clarification. FOOD BIOSCI 2020. [DOI: 10.1016/j.fbio.2020.100625] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
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22
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Ye Q, Chen K, Yang X, Xiao K, Shen Y. Facile and moderate immobilization of proteases on SPS nanospheres for the active collagen peptides. Food Chem 2020; 335:127610. [PMID: 32738532 DOI: 10.1016/j.foodchem.2020.127610] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/14/2019] [Revised: 06/20/2020] [Accepted: 07/16/2020] [Indexed: 10/23/2022]
Abstract
Although collagen peptides have been proved to possess wide applications in functional foods, cosmetics, medical materials and pharmaceuticals, the production of collagen peptides are deeply affected by proteases and substrate. In this study, the scalable-synthesis sulfonated polystyrene (SPS) nanospheres were utilized as accessible supports for efficient subtilisin immobilization. Detailed characterizations through SEM-EDS, TEM, TGA and FT-IR confirmed the undamaged formation of the SPS-subtilisin. Owing to the moderate hydrophobic effect and electrostatic interaction, the SPS-subtilisin could achieve 397.15 mg/g enzyme loading and 77.3% activity recovery. The tilapia skin collagen, as a resource-rich raw material, was hydrolyzed by the prepared immobilized subtilisin. The antioxidant activity of the attained peptides was verified. With the mass spectrometry and molecular docking analysis of product peptides sequences, representative peptides were synthesized and their anti-oxidation capacity and mechanism were affirmed, which further verified the undiminished catalytic ability of immobilized subtilisin.
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Affiliation(s)
- Qianqian Ye
- College of Food Science and Engineering, South China University of Technology, Guangzhou 510640, China
| | - Kai Chen
- College of Food Science and Engineering, South China University of Technology, Guangzhou 510640, China
| | - Xiaocui Yang
- College of Food Science and Engineering, South China University of Technology, Guangzhou 510640, China
| | - Kaijun Xiao
- College of Food Science and Engineering, South China University of Technology, Guangzhou 510640, China.
| | - Yi Shen
- College of Food Science and Engineering, South China University of Technology, Guangzhou 510640, China.
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23
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A novel thermostable cellulase cocktail enhances lignocellulosic bioconversion and biorefining in a broad range of pH. Int J Biol Macromol 2020; 154:349-360. [DOI: 10.1016/j.ijbiomac.2020.03.100] [Citation(s) in RCA: 32] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/22/2019] [Revised: 03/07/2020] [Accepted: 03/12/2020] [Indexed: 11/22/2022]
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24
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Srivastava N, Srivastava M, Mishra PK, Kausar MA, Saeed M, Gupta VK, Singh R, Ramteke PW. Advances in nanomaterials induced biohydrogen production using waste biomass. BIORESOURCE TECHNOLOGY 2020; 307:123094. [PMID: 32249026 DOI: 10.1016/j.biortech.2020.123094] [Citation(s) in RCA: 44] [Impact Index Per Article: 11.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/14/2019] [Revised: 02/23/2020] [Accepted: 02/28/2020] [Indexed: 06/11/2023]
Abstract
Recent advances on biohydrogen production using different types of waste biomass with the implementation of nanomaterials are summarized. Inspired by exceptional physicochemical and catalytic properties of nanomaterials, the present review focuses on several approaches including impact of nanomaterials on cellulosic biohydrogen production, possible pretreatment technology, as well as improved enzyme & sugar production in order to enhance the biohydrogen yield. Particularly, impacts of nanomaterial are elaborated in detail on different pathways of biohydrogen production (e.g. dark fermentation, photo-fermentation and hybrid-fermentation) using variety of waste biomass. Additionally, emphases are made on the feasibility of nanomaterials for making the biohydrogen production process more economical and sustainable and hence to develop advanced techniques for biohydrogen production using waste biomass.
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Affiliation(s)
- Neha Srivastava
- Department of Chemical Engineering and Technology, Indian Institute of Technology (BHU), Varanasi-221005, India
| | - Manish Srivastava
- Department of Chemical Engineering and Technology, Indian Institute of Technology (BHU), Varanasi-221005, India
| | - P K Mishra
- Department of Chemical Engineering and Technology, Indian Institute of Technology (BHU), Varanasi-221005, India
| | - Mohd Adnan Kausar
- Department of Biochemistry College of Medicine, University of Ha'il, Ha'il, Saudi Arabia
| | - Mohd Saeed
- Department of Biology College of Sciences, University of Ha'il, Ha'il, Saudi Arabia
| | - Vijai K Gupta
- ERA Chair of Green Chemistry, Department of Chemistry and Biotechnology, Tallinn University of Technology, 12618 Tallinn, Estonia; ERA Chair for Food (By-) Products Valorization Technologies (VALORTECH), Estonian University of Life Sciences, Kreutzwaldi 56/5, 51006 Tartu, Estonia
| | - Rajeev Singh
- Department of Environmental Studies, Satyawati College, University of Delhi, Delhi 110052, India
| | - P W Ramteke
- Department of Biological Sciences, Sam Higginbottom University of Agriculture, Technology & Sciences (Formerly Allahabad Agricultural Institute), Allahabad 221007, Uttar Pradesh, India.
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25
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Immobilization of Alkaline Protease From Bacillus brevis Using Ca-Alginate Entrapment Strategy for Improved Catalytic Stability, Silver Recovery, and Dehairing Potentialities. Catal Letters 2020. [DOI: 10.1007/s10562-020-03268-y] [Citation(s) in RCA: 25] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
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26
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27
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Sharifian S, Homaei A, Kamrani E, Etzerodt T, Patel S. New insights on the marine cytochrome P450 enzymes and their biotechnological importance. Int J Biol Macromol 2020; 142:811-821. [DOI: 10.1016/j.ijbiomac.2019.10.022] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/23/2019] [Revised: 10/02/2019] [Accepted: 10/02/2019] [Indexed: 01/09/2023]
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28
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Garcia Torres SG, Ilyina A, Ramos-Gonzalez R, Hernandez SC, Diaz-Jimenez L. Interaction Between Cobalt Ferrite Nanoparticles and Aspergillus niger Spores. IEEE Trans Nanobioscience 2019; 18:542-548. [PMID: 31514146 DOI: 10.1109/tnb.2019.2940354] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Abstract
The immobilization of microorganisms has been reported as an alternative to improve the efficiency of processes such as fermentation, anaerobic digestion, bioadsorption, and many others. Since the kinetics of bioprocesses are governed by the adsorbent/adsorbate interaction, it is important to know the mechanisms of interaction between biological materials and supports. This could help to define optimal operating conditions. In this research, the fungus that produces the cellulases, was selected, and the characterization of the interaction between fungal spores and cobalt ferrite magnetic nanoparticles, was performed. In order to select a fungal strain produces cellulase enzymes, a qualitative Congo Red test was carried out with a culture medium rich in carboxymethylcellulose. From five strains, Aspergillus niger was selected. Chitosan coated cobalt ferrite magnetic nanoparticles (CoMNP-C) were synthesized by single-step co-precipitation. The nano-size of CoMNP-C was demonstrated by XRD. The presence of a high content of amino groups (0.144 mM g-1) was observed, that could have an important role in the interaction between nanoparticles and spores. Adsorption kinetic studies were carried out. The pseudo-equilibrium time was estimated as 90 min. Spores adsorption isotherm was obtained with 3.45 mg of synthesized material at 30 °C. It was found that the adsorption of spores may be described by both models (Langmuir and Freundlich), suggesting a homogeneous surface of the nanoparticles and a multilayer adsorption phenomenon. These results can have transcendence in multiple applications based on the studied process.
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29
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Flores EEE, Cardoso FD, Siqueira LB, Ricardi NC, Costa TH, Rodrigues RC, Klein MP, Hertz PF. Influence of reaction parameters in the polymerization between genipin and chitosan for enzyme immobilization. Process Biochem 2019. [DOI: 10.1016/j.procbio.2019.06.001] [Citation(s) in RCA: 16] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
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30
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Shukla P. Synthetic Biology Perspectives of Microbial Enzymes and Their Innovative Applications. Indian J Microbiol 2019; 59:401-409. [PMID: 31762501 DOI: 10.1007/s12088-019-00819-9] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/09/2019] [Accepted: 08/19/2019] [Indexed: 11/29/2022] Open
Abstract
Microbial enzymes are high in demand and there is focus on their efficient, cost effective and eco-friendly production. The relevant microbial enzymes for respective industries needs to be identified but the conventional technologies don't have much edge over it. So, there is more attention towards high throughput methods for production of efficient enzymes. The enzymes produced by microbes need to be modified to bear the extreme conditions of the industries in order to get prolific outcomes and here the synthetic biology tools may be augmented to modify such microbes and enzymes. These tools are applied to synthesize novel and efficient enzymes. Use of computational tools for enzyme modification has provided new avenues for faster and specific modification of enzymes in a shorter time period. This review focuses on few important enzymes and their modification through synthetic biology tools including genetic modification, nanotechnology, post translational modification.
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Affiliation(s)
- Pratyoosh Shukla
- Enzyme Technology and Protein Bioinformatics Laboratory, Department of Microbiology, Maharshi Dayanand University, Rohtak, Haryana 124001 India
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31
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Chemical, physical, and biological coordination: An interplay between materials and enzymes as potential platforms for immobilization. Coord Chem Rev 2019. [DOI: 10.1016/j.ccr.2019.02.024] [Citation(s) in RCA: 118] [Impact Index Per Article: 23.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]
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32
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Zabihi E, Babaei A, Shahrampour D, Arab-Bafrani Z, Mirshahidi KS, Majidi HJ. Facile and rapid in-situ synthesis of chitosan-ZnO nano-hybrids applicable in medical purposes; a novel combination of biomineralization, ultrasound, and bio-safe morphology-conducting agent. Int J Biol Macromol 2019; 131:107-116. [DOI: 10.1016/j.ijbiomac.2019.01.224] [Citation(s) in RCA: 40] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/19/2018] [Revised: 01/01/2019] [Accepted: 01/16/2019] [Indexed: 11/25/2022]
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33
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Ariaeenejad S, Maleki M, Hosseini E, Kavousi K, Moosavi-Movahedi AA, Salekdeh GH. Mining of camel rumen metagenome to identify novel alkali-thermostable xylanase capable of enhancing the recalcitrant lignocellulosic biomass conversion. BIORESOURCE TECHNOLOGY 2019; 281:343-350. [PMID: 30831513 DOI: 10.1016/j.biortech.2019.02.059] [Citation(s) in RCA: 30] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/30/2018] [Revised: 02/09/2019] [Accepted: 02/11/2019] [Indexed: 06/09/2023]
Abstract
The aim of this study was to isolate and characterize novel alkali-thermostable xylanase genes from the mixed genome DNA of camel rumen metagenome. In this study, a five-stage computational screening procedure was utilized to find the primary candidate enzyme with superior properties from the camel rumen metagenome. This enzyme was subjected to cloning, purification, and structural and functional characterization. It showed high thermal stability, high activity in a broad range of pH (6-11) and temperature (30-90 °C) and effectivity in recalcitrant lignocellulosic biomass degradation. Our results demonstrated the power of in silico analysis to discover novel alkali-thermostable xylanases, effective for the bioconversion of lignocellulosic biomass.
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Affiliation(s)
- Shohreh Ariaeenejad
- Department of Systems Biology, Agricultural Biotechnology Research Institute of Iran (ABRII), Agricultural Research Education and Extension Organization (AREO), Karaj, Iran
| | - Morteza Maleki
- Department of Systems Biology, Agricultural Biotechnology Research Institute of Iran (ABRII), Agricultural Research Education and Extension Organization (AREO), Karaj, Iran
| | - Elnaz Hosseini
- Institute of Biochemistry and Biophysics (IBB), University of Tehran, Tehran, Iran
| | - Kaveh Kavousi
- Institute of Biochemistry and Biophysics (IBB), University of Tehran, Tehran, Iran
| | | | - Ghasem Hosseini Salekdeh
- Department of Systems Biology, Agricultural Biotechnology Research Institute of Iran (ABRII), Agricultural Research Education and Extension Organization (AREO), Karaj, Iran.
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Highly efficient and selective production of FFCA from CotA-TJ102 laccase-catalyzed oxidation of 5-HMF. Int J Biol Macromol 2019; 128:132-139. [DOI: 10.1016/j.ijbiomac.2019.01.104] [Citation(s) in RCA: 34] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/27/2018] [Revised: 01/21/2019] [Accepted: 01/21/2019] [Indexed: 11/19/2022]
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35
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Ariaeenejad S, Hosseini E, Maleki M, Kavousi K, Moosavi-Movahedi AA, Salekdeh GH. Identification and characterization of a novel thermostable xylanase from camel rumen metagenome. Int J Biol Macromol 2019; 126:1295-1302. [DOI: 10.1016/j.ijbiomac.2018.12.041] [Citation(s) in RCA: 33] [Impact Index Per Article: 6.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/27/2018] [Revised: 11/19/2018] [Accepted: 12/02/2018] [Indexed: 11/25/2022]
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36
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Thakrar FJ, Singh SP. Catalytic, thermodynamic and structural properties of an immobilized and highly thermostable alkaline protease from a haloalkaliphilic actinobacteria, Nocardiopsis alba TATA-5. BIORESOURCE TECHNOLOGY 2019; 278:150-158. [PMID: 30685619 DOI: 10.1016/j.biortech.2019.01.058] [Citation(s) in RCA: 22] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/29/2018] [Revised: 01/11/2019] [Accepted: 01/12/2019] [Indexed: 06/09/2023]
Abstract
A highly thermostable protease from a haloalkaliphilic actinobacteria was immobilized employing 5 different approaches on 24 carriers. On immobilization, the activation energy and deactivation rate constant decreased, which makes the immobilized protease favourable for applications. Similarly, pH and temperature stability was enhanced, while the Vmax and Km changed upon immobilization. The immobilized enzyme had greater stability in various metal ions and detergents. The structural topography of the immobilized enzyme elucidated by the FTIR suggested the function of aliphatic amines, alkenes and esters since amide I and II bands were affected. Noticeable decrease in the Amide A band suggests interaction between the immobilization carriers and -NH groups of the protease molecule. The suitability of the immobilized protease was established by designing a continuous flow enzyme bioreactor, displaying the enzyme half-life of 916.15 min at 60 °C. The enzyme reactor was highly efficient in the treatment of the municipal and dairy wastewater.
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Affiliation(s)
- Foram J Thakrar
- UGC-CAS Department of Biosciences, Saurashtra University, Rajkot 360 005, Gujarat, India
| | - Satya P Singh
- UGC-CAS Department of Biosciences, Saurashtra University, Rajkot 360 005, Gujarat, India.
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Mohammadi M, Rezaei Mokarram R, Ghorbani M, Hamishehkar H. Inulinase immobilized gold-magnetic nanoparticles as a magnetically recyclable biocatalyst for facial and efficient inulin biotransformation to high fructose syrup. Int J Biol Macromol 2019; 123:846-855. [DOI: 10.1016/j.ijbiomac.2018.11.160] [Citation(s) in RCA: 27] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/21/2018] [Revised: 11/15/2018] [Accepted: 11/16/2018] [Indexed: 01/31/2023]
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