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Feng H, Xin K, Chen W, Meng P, Tang X, Wang H, Wang C. Transcriptome analysis reveals diverse Curvularia tsudae strategies in response to cadmium stress. CHEMOSPHERE 2024; 351:141093. [PMID: 38169201 DOI: 10.1016/j.chemosphere.2023.141093] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/13/2023] [Revised: 09/26/2023] [Accepted: 12/30/2023] [Indexed: 01/05/2024]
Abstract
Cadmium (Cd) is a highly toxic heavy metal that poses significant threats to living organisms. Curvularia tsudae has demonstrated remarkable survival capabilities in the presence of high Cd concentrations, exhibiting its exceptional Cd tolerance. Although some physiological studies have been conducted, the molecular mechanisms underlying Cd tolerance in C. tsudae is largely unknown. In this study, a comparative transcriptome analysis was performed to explore the molecular mechanisms of C. tsudae under Cd stress. Among the 10,498 identified unigenes, 2526 differentially expressed genes (DEGs) were identified between the Cd-free and Cd-treated samples. Functional annotation and enrichment analysis of these DEGs identified several key biological processes involved in coping with Cd stress. Genes related to cell wall modification and organic acid metabolism contributes to Cd binding or chelation. Fourier transform infrared spectroscopy (FTIR) analysis further highlighted the modifications in functional groups with the cell wall under Cd stress. Furthermore, the transporters tended to be modulated in response to Cd stress, and up-regulated genes involved in antioxidants likely contributes to high Cd tolerance. The processes from DNA to protein metabolism appeared to responsive to the presence of Cd stress as well. These results contribute to the advance of the current knowledge about the response of C. tsudae to Cd stress and lay the foundation for further advancements in using fungi for the remediation of Cd-polluted environments.
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Affiliation(s)
- Huan Feng
- College of Forestry, Northwest A&F University, Yangling, 712100, Shaanxi, China
| | - Kexu Xin
- College of Forestry, Northwest A&F University, Yangling, 712100, Shaanxi, China
| | - Wei Chen
- College of Forestry, Northwest A&F University, Yangling, 712100, Shaanxi, China
| | - Panpan Meng
- College of Forestry, Northwest A&F University, Yangling, 712100, Shaanxi, China
| | - Xiaan Tang
- College of Forestry, Northwest A&F University, Yangling, 712100, Shaanxi, China
| | - Haihua Wang
- North Florida Research and Education Center, University of Florida, 155 Research Road, Quincy, FL, 32351, USA
| | - Chunyan Wang
- College of Forestry, Northwest A&F University, Yangling, 712100, Shaanxi, China.
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Kaushik S, Ranjan A, Sidhu A, Singh AK, Sirhindi G. Cadmium toxicity: its' uptake and retaliation by plant defence system and ja signaling. Biometals 2024:10.1007/s10534-023-00569-8. [PMID: 38206521 DOI: 10.1007/s10534-023-00569-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/22/2023] [Accepted: 12/05/2023] [Indexed: 01/12/2024]
Abstract
Cadmium (Cd+2) renders multifarious environmental stresses and highly toxic to nearly all living organisms including plants. Cd causes toxicity by unnecessary augmentation of ROS that targets essential molecules and fundamental processes in plants. In response, plants outfitted a repertory of mechanisms to offset Cd toxicity. The main elements of these are Cd chelation, sequestration into vacuoles, and adjustment of Cd uptake by transporters and escalation of antioxidative mechanism. Signal molecules like phytohormones and reactive oxygen species (ROS) activate the MAPK cascade, the activation of the antioxidant system andsynergistic crosstalk between different signal molecules in order to regulate plant responses to Cd toxicity. Transcription factors like WRKY, MYB, bHLH, bZIP, ERF, NAC etc., located downstream of MAPK, and are key factors in regulating Cd toxicity responses in plants. Apart from this, MAPK and Ca2+signaling also have a salient involvement in rectifying Cd stress in plants. This review highlighted the mechanism of Cd uptake, translocation, detoxification and the key role of defense system, MAPKs, Ca2+ signals and jasmonic acid in retaliating Cd toxicity via synchronous management of various other regulators and signaling components involved under stress condition.
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Affiliation(s)
- Shruti Kaushik
- Department of Botany, Punjabi University, Patiala, Punjab, 147002, India
| | - Alok Ranjan
- ICAR-National Institute for Plant Biotechnology, New Delhi, 110012, India
- Department of Biotechnology, Patna Women's College, Bihar, 800001, India
| | - Anmol Sidhu
- Department of Botany, Punjabi University, Patiala, Punjab, 147002, India
| | - Anil Kumar Singh
- ICAR-National Institute for Plant Biotechnology, New Delhi, 110012, India
| | - Geetika Sirhindi
- Department of Botany, Punjabi University, Patiala, Punjab, 147002, India.
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Mehri M, Ghabooli M, Movahedi Z. Contribution of Serendipita indica on growth improvement, antioxidative capacity of Dracocephalum kotschyi, and its resistance against cadmium stress. Int Microbiol 2023; 26:821-831. [PMID: 36801987 DOI: 10.1007/s10123-023-00339-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/09/2022] [Revised: 01/28/2023] [Accepted: 02/13/2023] [Indexed: 02/19/2023]
Abstract
Cadmium pollution is a severe issue worldwide which causes an elevated concern in agriculture. The utilization of plant-microbial interactions offers a promising approach for the remediation of cadmium-polluted soils. To elucidate the mechanism of Serendipita indica-mediated cadmium stress tolerance, a potting experiment was conducted to study the impact of S. indica on Dracocephalum kotschyi plants grown under different cadmium concentrations (0, 5, 10, and 20 mg/kg). The effects of cadmium and S. indica on plant growth, antioxidant enzyme activities, and accumulation of cadmium were investigated. The results showed that cadmium stress significantly decreases biomass, photosynthetic pigments, and carbohydrate content concomitantly with increasing antioxidant activities, electrolyte leakage, and hydrogen peroxide, proline, and cadmium content. Inoculation with S. indica alleviated the adverse effect of cadmium stress by enhancing shoot and root dry weight, photosynthetic pigments, and carbohydrate, proline, and catalase activity. Unlike cadmium stress, the presence of fungus led to a reduction in electrolyte leakage and hydrogen peroxide content as well as the content of cadmium in D. kotschyi leaf which mitigates cadmium-induced oxidative stress. Our findings demonstrated S. indica inoculation alleviates the adverse effects of cadmium stress in D. kotschyi plants which could prolong their survival under stressful conditions. Due to the importance of D. kotschyi and the effect of biomass increase on the amount of its medicinal substances, exploiting S. indica not only promotes plant growth, but also may be used as a potential eco-friendly method for relieving the phytotoxicity of Cd and remediating Cd-contaminated soil.
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Affiliation(s)
- Mohammad Mehri
- Department of Plant Production and Genetics, Faculty of Agriculture, Malayer University, Malayer, Iran
| | - Mehdi Ghabooli
- Department of Plant Production and Genetics, Faculty of Agriculture, Malayer University, Malayer, Iran.
| | - Zahra Movahedi
- Department of Plant Production and Genetics, Faculty of Agriculture, Malayer University, Malayer, Iran
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Wang Z, Liu J, Xu H, Liu J, Zhao Z, Gong X. Core Microbiome and Microbial Community Structure in Coralloid Roots of Cycas in Ex Situ Collection of Kunming Botanical Garden in China. Microorganisms 2023; 11:2144. [PMID: 37763988 PMCID: PMC10537389 DOI: 10.3390/microorganisms11092144] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/14/2023] [Revised: 08/12/2023] [Accepted: 08/18/2023] [Indexed: 09/29/2023] Open
Abstract
Endophytes are essential in plant succession and evolution, and essential for stress resistance. Coralloid root is a unique root structure found in cycads that has played a role in resisting adverse environments, yet the core taxa and microbial community of different Cycas species have not been thoroughly investigated. Using amplicon sequencing, we successfully elucidated the microbiomes present in coralloid roots of 10 Cycas species, representing all four sections of Cycas in China. We found that the endophytic bacteria in coralloid roots, i.e., Cyanobacteria, were mainly composed of Desmonostoc_PCC-7422, Nostoc_PCC-73102 and unclassified_f__Nostocaceae. Additionally, the Ascomycota fungi of Exophiala, Paraboeremia, Leptobacillium, Fusarium, Alternaria, and Diaporthe were identified as the core fungi taxa. The Ascomycota fungi of Nectriaceae, Herpotrichiellaceae, Cordycipitaceae, Helotiaceae, Diaporthaceae, Didymellaceae, Clavicipitaceae and Pleosporaceae were identified as the core family taxa in coralloid roots of four sections. High abundance but low diversity of bacterial community was detected in the coralloid roots, but no significant difference among species. The fungal community exhibited much higher complexity compared to bacteria, and diversity was noted among different species or sections. These core taxa, which were a subset of the microbiome that frequently occurred in all, or most, individuals of Cycas species, represent targets for the development of Cycas conservation.
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Affiliation(s)
- Zhaochun Wang
- State Key Laboratory for Conservation and Utilization of Bio-Resources in Yunnan, Yunnan University, Kunming 650091, China;
- Key Laboratory of Economic Plants and Biotechnology, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming 650201, China; (J.L.); (J.L.)
- University of Chinese Academy of Sciences, Beijing 101408, China
| | - Jian Liu
- Key Laboratory of Economic Plants and Biotechnology, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming 650201, China; (J.L.); (J.L.)
| | - Haiyan Xu
- State Key Laboratory of Plant Environmental Resilience, College of Biological Sciences, China Agricultural University, Beijing 100193, China;
| | - Jiating Liu
- Key Laboratory of Economic Plants and Biotechnology, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming 650201, China; (J.L.); (J.L.)
- University of Chinese Academy of Sciences, Beijing 101408, China
| | - Zhiwei Zhao
- State Key Laboratory for Conservation and Utilization of Bio-Resources in Yunnan, Yunnan University, Kunming 650091, China;
| | - Xun Gong
- Key Laboratory of Economic Plants and Biotechnology, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming 650201, China; (J.L.); (J.L.)
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Kurt-Kızıldoğan A, Otur Ç, Yıldırım K, Kavas M, Abanoz-Seçgin B. In-depth comparative transcriptome analysis of Purpureocillium sp. CB1 under cadmium stress. Appl Microbiol Biotechnol 2023:10.1007/s00253-023-12655-5. [PMID: 37436480 DOI: 10.1007/s00253-023-12655-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/24/2022] [Revised: 06/13/2023] [Accepted: 06/19/2023] [Indexed: 07/13/2023]
Abstract
Fungal bioremediation is a very attractive tool to cope with environmental pollution. We aimed to decipher the cadmium (Cd) response of Purpureocillium sp. CB1, isolated from polluted soil, at transcriptome level by RNA-sequencing (RNA-seq). We used 500 and 2500 mg/L of Cd2+ concentrations at two time points (t6;36). RNA-seq determined 620 genes that were co-expressed in all samples. The highest number of differentially expressed genes (DEGs) was obtained within the first six h of exposure to 2500 mg/L of Cd2+. Several genes encoding transcriptional regulators, transporters, heat shock proteins, and oxidative stress-related genes were differentially expressed under Cd2+ stress. Remarkably, the genes that encode salicylate hydroxylase, which is involved in naphthalene biodegradation pathway, were significantly overexpressed. Utilization of diesel as the sole carbon source by CB1 even in the presence of Cd2+ supported concomitant upregulation of hydrocarbon degradation pathway genes. Furthermore, leucinostatin-related gene expression levels increased under Cd2+ stress. In addition, leucinostatin extracts from Cd2+-treated CB1 cultures showed higher antifungal activity than the control. Notably, Cd2+ in CB1 was mainly found as bound to the cell wall, thus confirming its adsorption potential. Cd2+ stress slightly reduced growth and led to mycelial malformation due to Cd2+ adsorption, especially at a concentration of 2500 mg/L at t36. A strong correlation was recorded between RNA-seq and reverse-transcriptase-quantitative polymerase chain reaction (RT-qPCR) data. In conclusion, the study represents the first transcriptome analysis of Purpureocillium sp. under Cd2+ stress, providing insights into the primary targets for rational engineering to construct strains with remarkable bioremediation potency. KEY POINTS: • Upregulation of genes encoding salicylate hydroxylases under Cd2+ stress • Maximum Cd2+ adsorption at 500 mg/L at t36 as tightly bound to the cell wall • Concordant bioremediation potential of CB1 on Cd2+ and diesel.
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Affiliation(s)
- Aslıhan Kurt-Kızıldoğan
- Department of Agricultural Biotechnology, Faculty of Agriculture, Ondokuz Mayıs University, 55139, Samsun, Turkey.
| | - Çiğdem Otur
- Department of Agricultural Biotechnology, Faculty of Agriculture, Ondokuz Mayıs University, 55139, Samsun, Turkey
| | - Kubilay Yıldırım
- Department of Molecular Biology and Genetics, Ondokuz Mayıs University, 55139, Samsun, Turkey
| | - Musa Kavas
- Department of Agricultural Biotechnology, Faculty of Agriculture, Ondokuz Mayıs University, 55139, Samsun, Turkey
| | - Büşra Abanoz-Seçgin
- Department of Agricultural Biotechnology, Faculty of Agriculture, Ondokuz Mayıs University, 55139, Samsun, Turkey
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Asaf S, Jan R, Khan MA, Khan AL, Asif S, Bilal S, Ahmad W, Waqas M, Kim KM, Al-Harrasi A, Lee IJ. Unraveling the mutualistic interaction between endophytic Curvularia lunata CSL1 and tomato to mitigate cadmium (Cd) toxicity via transcriptomic insights. THE SCIENCE OF THE TOTAL ENVIRONMENT 2023; 861:160542. [PMID: 36493827 DOI: 10.1016/j.scitotenv.2022.160542] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/20/2022] [Revised: 11/06/2022] [Accepted: 11/23/2022] [Indexed: 06/17/2023]
Abstract
In this study, endophytic fungus Curvularia lunata strain SL1 was used to explore its bioremediation potential and growth restoration of tomato (Solanum lycopersicum) under cadmium (Cd) stress. Our findings demonstrate that SL1 establishes a symbiotic relationship with tomato plants, which modulates the antioxidant system, secondary metabolites, and gene expression in tomato plants exposed to Cd stress. Under Cd stress, tomato seedling growth was significantly reduced by up to 42.8 %, although this reduction was mitigated by up to 25 % after SL1 inoculation. Similar to this, SLI inoculation inhibits Cd absorption and translocation to the upper parts of the plant. Additionally, during Cd stress, phytohormones related to stress, including jasmonic acid (JA), abscisic acid (ABA), and ethylene (ET), were elevated; however, SL1 inoculation lowered their level. RNA-Seq data revealed that the highest number of differentially expressed genes (DEGs) was detected in the comparison between control and 1 mM Cd, followed by 2 mM Cd stress. These DEGs were mostly related to oxidoreductase activity, catalytic activity, plant hormones transduction, and photosynthesis. The findings also suggested that SL1 could improve tomato tolerance to Cd stress by modulating Ca2+ signaling, phytohormone biosynthesis, MAPK signaling pathway, and some transcription factors.
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Affiliation(s)
- Sajjad Asaf
- Natural and Medical Sciences Research Center, University of Nizwa, 616 Nizwa, Oman
| | - Rahmatullah Jan
- Department of Applied Biosciences, Kyungpook National University, Daegu 41566, Republic of Korea
| | - Muhammad Aaqil Khan
- Department of Chemical and Life Science, Qurtaba University of Science and Technology, Peshawar, Pakistan
| | - Abdul Latif Khan
- Department of Engineering Technology, University of Houston, Sugar Land, TX, 77479, USA
| | - Saleem Asif
- Department of Applied Biosciences, Kyungpook National University, Daegu 41566, Republic of Korea
| | - Saqib Bilal
- Natural and Medical Sciences Research Center, University of Nizwa, 616 Nizwa, Oman
| | - Waqar Ahmad
- Department of Engineering Technology, University of Houston, Sugar Land, TX, 77479, USA
| | - Muhammad Waqas
- Department of Agriculture Extension, Government of Khyber Pakhtunkhwa, Mardan, Pakistan
| | - Kyung-Min Kim
- Department of Applied Biosciences, Kyungpook National University, Daegu 41566, Republic of Korea.
| | - Ahmed Al-Harrasi
- Natural and Medical Sciences Research Center, University of Nizwa, 616 Nizwa, Oman.
| | - In-Jung Lee
- Department of Applied Biosciences, Kyungpook National University, Daegu 41566, Republic of Korea.
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Mashabela MD, Masamba P, Kappo AP. Applications of Metabolomics for the Elucidation of Abiotic Stress Tolerance in Plants: A Special Focus on Osmotic Stress and Heavy Metal Toxicity. PLANTS (BASEL, SWITZERLAND) 2023; 12:269. [PMID: 36678982 PMCID: PMC9860948 DOI: 10.3390/plants12020269] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/28/2022] [Revised: 01/04/2023] [Accepted: 01/04/2023] [Indexed: 06/17/2023]
Abstract
Plants undergo metabolic perturbations under various abiotic stress conditions; due to their sessile nature, the metabolic network of plants requires continuous reconfigurations in response to environmental stimuli to maintain homeostasis and combat stress. The comprehensive analysis of these metabolic features will thus give an overview of plant metabolic responses and strategies applied to mitigate the deleterious effects of stress conditions at a biochemical level. In recent years, the adoption of metabolomics studies has gained significant attention due to the growing technological advances in analytical biochemistry (plant metabolomics). The complexity of the plant biochemical landscape requires sophisticated, advanced analytical methods. As such, technological advancements in the field of metabolomics have been realized, aided much by the development and refinement of separatory techniques, including liquid and gas chromatography (LC and GC), often hyphenated to state-of-the-art detection instruments such as mass spectrometry (MS) or nuclear resonance magnetic (NMR) spectroscopy. Significant advances and developments in these techniques are briefly highlighted in this review. The enormous progress made thus far also comes with the dawn of the Internet of Things (IoT) and technology housed in machine learning (ML)-based computational tools for data acquisition, mining, and analysis in the 4IR era allowing for broader metabolic coverage and biological interpretation of the cellular status of plants under varying environmental conditions. Thus, scientists can paint a holistic and comprehensive roadmap and predictive models for metabolite-guided crop improvement. The current review outlines the application of metabolomics and related technological advances in elucidating plant responses to abiotic stress, mainly focusing on heavy metal toxicity and subsequent osmotic stress tolerance.
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Ban Y, Tan J, Xiong Y, Mo X, Li W, Jia C, Ding Y, Xu Z. The responses and detoxification mechanisms of dark septate endophytes (DSE), Exophiala salmonis, to CuO nanoparticles. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2023; 30:13773-13787. [PMID: 36149553 DOI: 10.1007/s11356-022-23099-1] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/01/2022] [Accepted: 09/14/2022] [Indexed: 06/16/2023]
Abstract
To understand the tolerance mechanisms of dark septate endophytes (DSE), Exophiala salmonis, to CuO nanoparticles (CuO-NPs) with different sizes (40 and 150 nm), we investigated the morphology, antioxidant response, Cu subcellular distribution, and the melanin gene expression in the mycelia of E. salmonis. E. salmonis was cultured in liquid and solid media under the stress of increasing CuO-NP concentrations (0, 50, 100, 150, and 250 mg/L). Results showed that (1) E. salmonis showed good CuO-NP tolerance, and the tolerance to CuO-NPs at 150 nm was stronger than that at 40 nm. A large number of agglomeration structures were observed on the mycelia surface with the exception of 50 mg/L CuO-NPs with a diameter of 150 nm. (2) CuO-NP stress significantly stimulated the production of antioxidant enzymes, particularly the CuO-NPs with small particle size (40 nm). (3) Cu uptaken by E. salmonis increased proportionally with the increase of CuO-NP concentration in the medium. More than 80% Cu was absorbed in cell wall of mycelia treated with a small particle size (40 nm). (4) FTIR analysis revealed that hydroxyl, amine, carboxyl, and phosphate groups were associated with CuO-NP binding regardless of particle size. (5) Fungal melanin content increased with the addition of CuO-NPs; the increase of melanin induced by CuO-NPs with small particle size (40 nm) was more significant. (6) The expression of 1,3,6,8-tetrahydroxynaphthalene reductase (Arp2) in the melanin synthesis pathway increased under the stress of CuO-NPs, and CuO-NPs with a small particle size (40 nm) caused a significant change in the expression level of Arp2 gene than those with a large particle size (150 nm). In conclusion, E. salmonis had a strong tolerance to CuO-NPs and mitigated the toxic effects of CuO-NPs through the antioxidant system, the expression of genes related to melanin synthesis, and the synthesis of melanin.
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Affiliation(s)
- Yihui Ban
- School of Chemistry, Chemical Engineering and Life Sciences, Wuhan University of Technology, Wuhan, 430070, Hubei, China
| | - Jiayuan Tan
- School of Chemistry, Chemical Engineering and Life Sciences, Wuhan University of Technology, Wuhan, 430070, Hubei, China
| | - Yang Xiong
- School of Chemistry, Chemical Engineering and Life Sciences, Wuhan University of Technology, Wuhan, 430070, Hubei, China
| | - Xiantong Mo
- School of Chemistry, Chemical Engineering and Life Sciences, Wuhan University of Technology, Wuhan, 430070, Hubei, China
| | - Wenxuan Li
- School of Chemistry, Chemical Engineering and Life Sciences, Wuhan University of Technology, Wuhan, 430070, Hubei, China
| | - Chenyue Jia
- School of Chemistry, Chemical Engineering and Life Sciences, Wuhan University of Technology, Wuhan, 430070, Hubei, China
| | - Yiwen Ding
- School of Chemistry, Chemical Engineering and Life Sciences, Wuhan University of Technology, Wuhan, 430070, Hubei, China
| | - Zhouying Xu
- School of Civil Engineering and Architecture, Wuhan University of Technology, Wuhan, 430070, Hubei, China.
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Feng H, Meng P, Zhang S, Chen W, Wang H, Wang C. Insights from comparative transcriptome analysis in the responses of Pb-tolerant fungi Curvularia tsudae to Pb stress. ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY 2023; 249:114476. [PMID: 38321691 DOI: 10.1016/j.ecoenv.2022.114476] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/22/2022] [Revised: 12/06/2022] [Accepted: 12/23/2022] [Indexed: 02/08/2024]
Abstract
The fungus Curvularia tsudae can survive in environments that are extremely contaminated by heavy metals; however, the underlying molecular mechanisms of heavy metal tolerance are not clear. In this study, we determined the effects of lead (Pb) stress on the growth of C. tsudae and used RNA-Seq to identify significant genes and biological processes involved. The present study showed that C. tsudae had an outstanding resistant capacity to Pb stress and could survive at a concentration of 1600 mg L-1 Pb. Although an obvious inhibition on the growth was observed, the fungus exhibited tolerance as it continued to grow at a Pb concentration of 1600 mg L-1 for seven days. A total of 9997 (9020 up and 977 down) differentially expressed genes (DEGs) were detected in the mycelium of C. tsudae at Pb free (0 mg L-1) and Pb stressed samples. Pathway enrichment analysis identified several biological processes for managing Pb stress. Genes involved in carbohydrate metabolism tended to be modulated in response to Pb stress, while amino acids and the lipid metabolism would also be induced by Pb stress, and up-regulated genes involved in antioxidant substances and ABC transporters may be committed to high Pb tolerance. Our study contributes to the current literature on C. tsudae response to Pb stress and provides a useful reference for fungi as bioremediators in heavy metal-contaminated environments.
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Affiliation(s)
- Huan Feng
- College of Forestry, Northwest A&F University, Yangling 712100, Shaanxi, China
| | - Panpan Meng
- College of Forestry, Northwest A&F University, Yangling 712100, Shaanxi, China
| | - Shouxia Zhang
- College of Forestry, Northwest A&F University, Yangling 712100, Shaanxi, China
| | - Wei Chen
- College of Forestry, Northwest A&F University, Yangling 712100, Shaanxi, China
| | - Haihua Wang
- North Florida Research and Education Center, University of Florida, 155 Research Road, Quincy, FL 32351, USA
| | - Chunyan Wang
- College of Forestry, Northwest A&F University, Yangling 712100, Shaanxi, China.
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Malicka M, Magurno F, Piotrowska-Seget Z. Plant association with dark septate endophytes: When the going gets tough (and stressful), the tough fungi get going. CHEMOSPHERE 2022; 302:134830. [PMID: 35525444 DOI: 10.1016/j.chemosphere.2022.134830] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/14/2022] [Revised: 04/26/2022] [Accepted: 04/29/2022] [Indexed: 06/14/2023]
Abstract
Dark septate endophytes (DSEs) comprise a diverse and ubiquitous group of fungal generalists with broad habitat niches that robustly colonize the roots of plants in stressful environments. DSEs possess adaptation strategies that determine their high tolerance to heavy metal (HM) contamination, drought, and salinity. Most DSEs developed efficient melanin-dependent and melanin-independent mechanisms of HM detoxification and osmoprotection, including intracellular immobilization and extracellular efflux of HMs and excess ions, and the scavenging of reactive oxygen species. DSEs form mutualistic relationship with plants according to the hypothesis of "habitat-adapted associations", supporting the survival of their hosts under stressful conditions. As saprophytes, DSEs mineralize a complex soil substrate improving plants' nutrition and physiological parameters. They can protect the host plant from HMs by limiting HM accumulation in plant tissues and causing their sequestration in root cell walls as insoluble compounds, preventing further HM translocation to shoots. The presence of DSE in drought-affected plants can substantially ameliorate the physiology and architecture of root systems, improving their hydraulic properties. Plant growth-promoting features, supported by the versatility and easy culturing of DSEs, determine their high potential to enhance phytoremediation and revegetation projects for HM-contaminated, saline, and desertic lands reclamation.
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Affiliation(s)
- Monika Malicka
- Institute of Biology, Biotechnology and Environmental Protection, Faculty of Natural Sciences, University of Silesia in Katowice, Jagiellońska 28 Street, 40-032 Katowice, Poland.
| | - Franco Magurno
- Institute of Biology, Biotechnology and Environmental Protection, Faculty of Natural Sciences, University of Silesia in Katowice, Jagiellońska 28 Street, 40-032 Katowice, Poland
| | - Zofia Piotrowska-Seget
- Institute of Biology, Biotechnology and Environmental Protection, Faculty of Natural Sciences, University of Silesia in Katowice, Jagiellońska 28 Street, 40-032 Katowice, Poland
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11
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He C, Han T, Tan L, Li X. Effects of Dark Septate Endophytes on the Performance and Soil Microbia of Lycium ruthenicum Under Drought Stress. FRONTIERS IN PLANT SCIENCE 2022; 13:898378. [PMID: 35720577 PMCID: PMC9201775 DOI: 10.3389/fpls.2022.898378] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 03/17/2022] [Accepted: 05/03/2022] [Indexed: 06/15/2023]
Abstract
In the current study, we explored the effects of dark septate endophytes (DSE) (Neocamarosporium phragmitis, Alternaria chlamydospore, and Microascus alveolaris) on the performance and rhizosphere soil microbial composition of Lycium ruthenicum Murr under drought stress. Differences in plant growth and physiological indexes, soil parameters, and microbial composition under different treatments were studied. Three DSE species could form good symbiotic relationships with L. ruthenicum plants, and the symbionts depended on DSE species and water availability. Inoculation of DSE had the greatest benefit on host plants under drought conditions. In particular, N. phragmitis and A. chlamydospore had a significant positive influence on the biomass, morphological and physiological indexes of host plants. Additionally, the content of arbuscular mycorrhiza (AM) fungi, gram-negative bacteria, and actinomycetes in the soil was significantly elevated after DSE inoculation in the absence of water. Based on a variance decomposition analysis, DSE was the most important factor affecting the growth and physiological parameters of host plants, and DSE inoculation combined with water conditions significantly affected the contents of soil microbial communities. Structural equation model (SEM) analysis showed that the positive effects of DSE on L. ruthenicum varied with DSE species and plant parameters under different water conditions. These results are helpful to understand the ecological function of DSE and its potential application in the cultivation of L. ruthenicum plants in drylands.
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Affiliation(s)
- Chao He
- Institute of Medicinal Plant Development, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing, China
| | - Tingting Han
- Institute of Medicinal Plant Development, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing, China
| | - Ling Tan
- Xiyuan Hospital, Chinese Academy of Traditional Chinese Medicine, Beijing, China
| | - Xianen Li
- Institute of Medicinal Plant Development, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing, China
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12
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Parada R, Mendoza L, Cotoras M, Ortiz C. Endophytic fungi isolated from plants present on a mine tailing facility show a differential growth response to lead. Lett Appl Microbiol 2022; 75:345-354. [PMID: 35486037 DOI: 10.1111/lam.13730] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/25/2021] [Revised: 04/08/2022] [Accepted: 04/25/2022] [Indexed: 11/27/2022]
Abstract
Plants growing in metal polluted sites can be a source of microorganisms suitable for bio-assisted phytoremediation strategies. In this work, three endophytic fungi from the roots of Poa stuckertii and Poa pratensis, two grasses that naturally colonize a Lead-Zinc tailing storage facility in Southern Chile, were isolated and identified. The leachate of the tailing sands showed a Pb content of 1.36 ± 0.71 ppm, and a pH of 7.3. By amplifying the ITS1/ITS4 region of fungal ribosomal DNA, the isolates were identified as Bjerkandera sp., Microdochium sp. and Sarocladium sp. When the growth media was supplemented with 50 ppm of Pb at pH 4.5, Microdochium sp. showed an 80% decrease in the biomass, but the biomass production of Bjerkandera sp. and Sarocladium sp. was not affected by the same treatment. The accumulation of Pb in Microdochium sp. increased as a function of the concentration of the metal in the growth media, between 48.3 μM and 241.3 μM. We showed that two Poaceae plants growing on a Lead-Zinc tailing storage facility are a source of endophyte fungi, and that Pb had a differential effect on the growth of the isolated fungi independent of the plant of origin.
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Affiliation(s)
- Rodolfo Parada
- Facultad de Química y Biología Universidad de Santiago de Chile, Santiago, Chile Av. Bernardo O´Higgins 3363, Post-code 9170022, Estación Central, Chile
| | - Leonora Mendoza
- Facultad de Química y Biología Universidad de Santiago de Chile, Santiago, Chile Av. Bernardo O´Higgins 3363, Post-code 9170022, Estación Central, Chile
| | - Milena Cotoras
- Facultad de Química y Biología Universidad de Santiago de Chile, Santiago, Chile Av. Bernardo O´Higgins 3363, Post-code 9170022, Estación Central, Chile
| | - Claudia Ortiz
- Facultad de Química y Biología Universidad de Santiago de Chile, Santiago, Chile Av. Bernardo O´Higgins 3363, Post-code 9170022, Estación Central, Chile
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Passarini MRZ, Ottoni JR, Costa PEDS, Hissa DC, Falcão RM, Melo VMM, Balbino VQ, Mendonça LAR, Lima MGDS, Coutinho HDM, Verde LCL. Fungal community diversity of heavy metal contaminated soils revealed by metagenomics. Arch Microbiol 2022; 204:255. [PMID: 35412096 DOI: 10.1007/s00203-022-02860-7] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/18/2021] [Revised: 03/17/2022] [Accepted: 03/20/2022] [Indexed: 11/29/2022]
Abstract
The inappropriate disposal of toxic compounds generated by industrial activity has been impacting the environment considerably. Microbial communities inhabiting contaminated sites may represent interesting ecological alternatives for the decontamination of environments. The present work aimed to investigate the fungal diversity and its functionality contained in stream sediments with industrial waste contaminated with heavy metals by using metagenomic approach. A total of 12 fungal orders were retrieved from datasets and, at phylum level, Ascomycota was the most abundant, followed by Basidiomycota, Chytridiomycota and Blastocladiomycota. Higher abundance of sequences was encountered within the less contaminated site, while the lower abundance was found in the sample with the higher contamination with lead. Gene sequences related to DNA repair and heavy metals biosorption processes were found in the four samples analyzed. The genera Aspergillus and Chaetomium, and Saccharomycetales order were highly present within all samples, showing their potential to be used for bioremediation studies. The present work demonstrated the importance of using the metagenomic approach to understand the dynamics and the possible metabolic pathways associated with fungal communities related to environmental samples containing heavy metals, as well as evidenced the importance of improving culturomics techniques for isolating strains with potential application in bioremediation processes of environments contaminated with heavy metals.
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Affiliation(s)
- Michel Rodrigo Zambrano Passarini
- UNILA-Universidade Federal da Integração Latino-Americana, Av. Tarquínio Joslin Dos Santos, 1000-Jd Universitário, Foz do Iguaçu, PR, 85870-650, Brazil.
| | - Júlia Ronzella Ottoni
- UNILA-Universidade Federal da Integração Latino-Americana, Av. Tarquínio Joslin Dos Santos, 1000-Jd Universitário, Foz do Iguaçu, PR, 85870-650, Brazil
| | | | | | - Raul Maia Falcão
- Department of Genetics, Federal University of Pernambuco, Recife, Brazil
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14
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do Nascimento SV, Costa PHDO, Herrera H, Caldeira CF, Gastauer M, Ramos SJ, Oliveira G, Valadares RBDS. Proteomic Profiling and Rhizosphere-Associated Microbial Communities Reveal Adaptive Mechanisms of Dioclea apurensis Kunth in Eastern Amazon's Rehabilitating Minelands. PLANTS (BASEL, SWITZERLAND) 2022; 11:712. [PMID: 35270182 PMCID: PMC8912737 DOI: 10.3390/plants11050712] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 01/20/2022] [Revised: 02/23/2022] [Accepted: 02/27/2022] [Indexed: 06/14/2023]
Abstract
Dioclea apurensis Kunth is native to ferruginous rocky outcrops (known as canga) in the eastern Amazon. Native cangas are considered hotspots of biological diversity and have one of the largest iron ore deposits in the world. There, D. apurensis can grow in post-mining areas where molecular mechanisms and rhizospheric interactions with soil microorganisms are expected to contribute to their establishment in rehabilitating minelands (RM). In this study, we compare the root proteomic profile and rhizosphere-associated bacterial and fungal communities of D. apurensis growing in canga and RM to characterize the main mechanisms that allow the growth and establishment in post-mining areas. The results showed that proteins involved in response to oxidative stress, drought, excess of iron, and phosphorus deficiency showed higher levels in canga and, therefore, helped explain its high establishment rates in RM. Rhizospheric selectivity of microorganisms was more evident in canga. The microbial community structure was mostly different between the two habitats, denoting that despite having its preferences, D. apurensis can associate with beneficial soil microorganisms without specificity. Therefore, its good performance in RM can also be improved or attributed to its ability to cope with beneficial soil-borne microorganisms. Native plants with such adaptations must be used to enhance the rehabilitation process.
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Affiliation(s)
- Sidney Vasconcelos do Nascimento
- Instituto Tecnológico Vale, Rua Boaventura da Silva 955, Belém CEP 66050-090, Brazil; (S.V.d.N.); (P.H.d.O.C.); (C.F.C.); (M.G.); (S.J.R.); (G.O.)
- Programa de Pós-Graduacão em Genética e Biologia Molecular, Universidade Federal do Pará, Belém CEP 66075-110, Brazil
| | - Paulo Henrique de Oliveira Costa
- Instituto Tecnológico Vale, Rua Boaventura da Silva 955, Belém CEP 66050-090, Brazil; (S.V.d.N.); (P.H.d.O.C.); (C.F.C.); (M.G.); (S.J.R.); (G.O.)
| | - Hector Herrera
- Departamento de Ciencias Forestales, Universidad de La Frontera, Temuco 4811230, Chile;
| | - Cecílio Frois Caldeira
- Instituto Tecnológico Vale, Rua Boaventura da Silva 955, Belém CEP 66050-090, Brazil; (S.V.d.N.); (P.H.d.O.C.); (C.F.C.); (M.G.); (S.J.R.); (G.O.)
| | - Markus Gastauer
- Instituto Tecnológico Vale, Rua Boaventura da Silva 955, Belém CEP 66050-090, Brazil; (S.V.d.N.); (P.H.d.O.C.); (C.F.C.); (M.G.); (S.J.R.); (G.O.)
| | - Silvio Junio Ramos
- Instituto Tecnológico Vale, Rua Boaventura da Silva 955, Belém CEP 66050-090, Brazil; (S.V.d.N.); (P.H.d.O.C.); (C.F.C.); (M.G.); (S.J.R.); (G.O.)
| | - Guilherme Oliveira
- Instituto Tecnológico Vale, Rua Boaventura da Silva 955, Belém CEP 66050-090, Brazil; (S.V.d.N.); (P.H.d.O.C.); (C.F.C.); (M.G.); (S.J.R.); (G.O.)
| | - Rafael Borges da Silva Valadares
- Instituto Tecnológico Vale, Rua Boaventura da Silva 955, Belém CEP 66050-090, Brazil; (S.V.d.N.); (P.H.d.O.C.); (C.F.C.); (M.G.); (S.J.R.); (G.O.)
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15
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Liu D, Zheng K, Wang Y, Zhang Y, Lao R, Qin Z, Li T, Zhao Z. Harnessing an arbuscular mycorrhizal fungus to improve the adaptability of a facultative metallophytic poplar (Populus yunnanensis) to cadmium stress: Physiological and molecular responses. JOURNAL OF HAZARDOUS MATERIALS 2022; 424:127430. [PMID: 34678563 DOI: 10.1016/j.jhazmat.2021.127430] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/07/2021] [Revised: 09/24/2021] [Accepted: 10/02/2021] [Indexed: 06/13/2023]
Abstract
Populus yunnanensis Dode, a facultative metallophytic poplar, exhibits afforestation potential in barren mine tailing areas. However, the interactions and functional roles of arbuscular mycorrhizal fungus (AMF) in P. yunnanensis adaptability to heavy metal stress remain unclear. Physiological and molecular responses of P. yunnanensis plantlets to AMF (Funneliformis mosseae) under cadmium (Cd) stress (50 mg kg-1) were investigated. Results showed attenuation of Cd phytotoxicity effects on cell organelles upon AMF inoculation, which also reduced the Cd concentration in the poplar leaves, stems, and roots. Under Cd stress, AMF-blocking of metal transporter (e.g., Ca2+ channel) activity occurred, decreasing root cell Cd influx by reducing H+ efflux. Bioaugmentation of rhizosphere sediments by AMF to stabilize metals with a decreasing DTPA-extractable Cd also occurred. The AMF inoculation promoted Cd conversion into inactive, less phytotoxic forms, and helped to maintain ion homeostasis and relieve nutritional ion (e.g., Ca, Mg) disorders caused by excessive Cd. Leaf enzyme and non-enzyme antioxidant systems were triggered. Root and leaf physiological response patterns differed. The AMF regulated the poplar functional genes, and nine metal-responsive gene clusters were identified. We suggest that AMF is a functional component of P. yunnanensis phenotype extension, contributing to strong adaptability to unfavorable mine tailings conditions.
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Affiliation(s)
- Di Liu
- State Key Laboratory for Conservation and Utilization of Bio-resources in Yunnan, Yunnan University, Kunming 650091, PR China; School of Life Sciences, Yunnan University, Kunming 650091, PR China
| | - Kuanyu Zheng
- State Key Laboratory for Conservation and Utilization of Bio-resources in Yunnan, Yunnan University, Kunming 650091, PR China; Key Laboratory of Agricultural Biotechnology of Yunnan Province, Biotechnology and Germplasm Resources Research Institute, Yunnan Academy of Agricultural Sciences, Kunming 650205, PR China
| | - Yue Wang
- State Key Laboratory for Conservation and Utilization of Bio-resources in Yunnan, Yunnan University, Kunming 650091, PR China; School of Life Sciences, Yunnan University, Kunming 650091, PR China
| | - Yan Zhang
- State Key Laboratory for Conservation and Utilization of Bio-resources in Yunnan, Yunnan University, Kunming 650091, PR China; School of Life Sciences, Yunnan University, Kunming 650091, PR China
| | - Ruimin Lao
- State Key Laboratory for Conservation and Utilization of Bio-resources in Yunnan, Yunnan University, Kunming 650091, PR China; School of Life Sciences, Yunnan University, Kunming 650091, PR China
| | - Zhiyang Qin
- State Key Laboratory for Conservation and Utilization of Bio-resources in Yunnan, Yunnan University, Kunming 650091, PR China; School of Life Sciences, Yunnan University, Kunming 650091, PR China
| | - Tao Li
- State Key Laboratory for Conservation and Utilization of Bio-resources in Yunnan, Yunnan University, Kunming 650091, PR China; School of Life Sciences, Yunnan University, Kunming 650091, PR China.
| | - Zhiwei Zhao
- State Key Laboratory for Conservation and Utilization of Bio-resources in Yunnan, Yunnan University, Kunming 650091, PR China; School of Life Sciences, Yunnan University, Kunming 650091, PR China.
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Xiao Y, Dai MX, Zhang GQ, Yang ZX, He YM, Zhan FD. Effects of the Dark Septate Endophyte (DSE) Exophiala pisciphila on the Growth of Root Cell Wall Polysaccharides and the Cadmium Content of Zea mays L. under Cadmium Stress. J Fungi (Basel) 2021; 7:jof7121035. [PMID: 34947018 PMCID: PMC8708371 DOI: 10.3390/jof7121035] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/06/2021] [Revised: 11/27/2021] [Accepted: 11/30/2021] [Indexed: 02/06/2023] Open
Abstract
This paper aims to investigate the mechanism by which dark septate endophytes (DSEs) enhance cadmium (Cd) tolerance in there host plants. Maize (Zea mays L.) was inoculated with a DSE, Exophiala pisciphila, under Cd stress at different concentrations (0, 5, 10, and 20 mg·kg−1). The results show that, under 20 mg/kg Cd stress, DSE significantly increased maize biomass and plant height, indicating that DSE colonization can be utilized to increase the Cd tolerance of host plants. More Cd was retained in DSE-inoculated roots, especially that fixed in the root cell wall (RCW). The capability of DSE to induce a higher Cd holding capacity in the RCW is caused by modulation of the total sugar and uronic acid of DSE-colonized RCW, mainly the pectin and hemicellulose fractions. The fourier-transform spectroscopy analysis results show that carboxyl, hydroxyl, and acidic groups are involved in Cd retention in the DSE-inoculated RCW. The promotion of the growth of maize and improvement in its tolerance to Cd due to DSEs are related to restriction of the translocation of Cd from roots to shoots; resistance of Cd uptake Cd inside cells; and the increase in RCW-integrated Cd through modulating RCW polysaccharide components.
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Baghaie AH, Aghili F. Contribution of Piriformospora indica on improving the nutritional quality of greenhouse tomato and its resistance against cu toxicity after humic acid addition to soil. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2021; 28:64572-64585. [PMID: 34308521 DOI: 10.1007/s11356-021-15599-3] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/17/2019] [Accepted: 07/19/2021] [Indexed: 06/13/2023]
Abstract
Protected cultivation has a significant contribution in vegetable production. We investigated whether humic acid addition to soil and Piriformospora indica can improve the nutritional quality of greenhouse tomato. We conducted a pot experiment, in which the effects of P. indica inoculation, humic acid addition, and Cu spiking to soil (0, 120, 240, and 500 ppm Cu) were tested. Humic acid addition to soil spiked with 500 ppm Cu decreased the Cu concentration in the fruits of plants inoculated with P. indica from 0.65 to 0.40 mg 100 g Fw-1, which is still above the maximum allowed limits of Cu in tomato by World Health Organization (WHO). The lycopene and ascorbic acid content of tomato fruits were consistently improved by humic acid addition and P. indica inoculation. The antioxidant enzymes' activity changed in response to humic acid addition, Cu spiking to soil, and P. indica inoculation. With increasing Cu level up to 240 ppm, the activity of superoxide dismutase (SOD) and peroxidase (POD) increased significantly. However, with spiking more Cu to soil, the activity of antioxidant enzymes reduced and the MDA content increased significantly. Addition of humic acid to soil and/or presence of P. indica increased the activity of antioxidant enzymes when the soil spiked with 500 ppm Cu. This study indicated that addition of P. indica and humic acid to the soil can enhance the nutritional quality of greenhouse tomato by reduction of Cu toxicity as a common pollutant in the greenhouse media and increasing the antioxidant content of fruits.
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Affiliation(s)
| | - Forough Aghili
- Department of Agriculture, Mohajer Technical University of Isfahan, Isfahan, Iran
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18
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Ignatova L, Kistaubayeva A, Brazhnikova Y, Omirbekova A, Mukasheva T, Savitskaya I, Karpenyuk T, Goncharova A, Egamberdieva D, Sokolov A. Characterization of cadmium-tolerant endophytic fungi isolated from soybean ( Glycine max) and barley ( Hordeum vulgare). Heliyon 2021; 7:e08240. [PMID: 34765771 PMCID: PMC8570957 DOI: 10.1016/j.heliyon.2021.e08240] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/30/2021] [Revised: 04/08/2021] [Accepted: 10/20/2021] [Indexed: 11/29/2022] Open
Abstract
Cadmium stress disrupts plant-microbial interactions and reduces plant growth and development. In plants, the tolerance to stress can be increased by inoculation with endophytic microorganisms. The aim of this study was to investigate the distribution of endophytic fungi in various plant organs of barley and soybean and evaluate their Cd removal ability. Two hundred fifty-three fungal strains were isolated from various organs of barley (Hordeum vulgare cv Arna) and soybean (Glycine max cv Almaty). The colonization rate ranged from 13.6% to 57.3% and was significantly higher in the roots. Ten genera were identified: Fusarium, Penicillium, Aspergillus, Metarhizium, Beauveria, Trichoderma, Rhodotorula, Cryptococcus, Aureobasidium and Metschnikowia. Twenty-three fungal strains have a Cd tolerance index from 0.24 to 1.12. Five strains (Beauveria bassiana T7, Beauveria bassiana T15, Rhodotorula mucilaginosa MK1, Rhodotorula mucilaginosa RH2, Metschnikowia pulcherrima MP2) with the highest level of Cd tolerance have minimum inhibitory concentrations from 290 to 2400 μg/ml. These fungi were able to remove Cd up to 59%. The bioaccumulation capacity ranged from 2.3 to 11.9 mg/g. Selected fungal strains could be considered as biological agents for their potential application in the bioremediation of contaminated sites.
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Affiliation(s)
- Lyudmila Ignatova
- Faculty of Biology and Biotechnology, Al-Farabi Kazakh National University, Almaty, 050038, Kazakhstan
| | - Aida Kistaubayeva
- Faculty of Biology and Biotechnology, Al-Farabi Kazakh National University, Almaty, 050038, Kazakhstan
| | - Yelena Brazhnikova
- Faculty of Biology and Biotechnology, Al-Farabi Kazakh National University, Almaty, 050038, Kazakhstan
| | - Anel Omirbekova
- Faculty of Biology and Biotechnology, Al-Farabi Kazakh National University, Almaty, 050038, Kazakhstan
| | - Togzhan Mukasheva
- Faculty of Biology and Biotechnology, Al-Farabi Kazakh National University, Almaty, 050038, Kazakhstan
| | - Irina Savitskaya
- Faculty of Biology and Biotechnology, Al-Farabi Kazakh National University, Almaty, 050038, Kazakhstan
| | - Tatyana Karpenyuk
- Faculty of Biology and Biotechnology, Al-Farabi Kazakh National University, Almaty, 050038, Kazakhstan
| | - Alla Goncharova
- Faculty of Biology and Biotechnology, Al-Farabi Kazakh National University, Almaty, 050038, Kazakhstan
| | | | - Alexander Sokolov
- Center of Physico-Chemical Methods of Research and Analysis, Al-Farabi Kazakh National University, Kazakhstan
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Aspergillus sp. A31 and Curvularia geniculata P1 mitigate mercury toxicity to Oryza sativa L. Arch Microbiol 2021; 203:5345-5361. [PMID: 34387704 DOI: 10.1007/s00203-021-02481-6] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/17/2021] [Revised: 07/05/2021] [Accepted: 07/07/2021] [Indexed: 12/29/2022]
Abstract
Aspergillus sp. A31 and Curvularia geniculata P1 are endophytes that colonize the roots of Aeschynomene fluminensis Vell. and Polygonum acuminatum Kunth. in humid environments contaminated with mercury. The two strains mitigated mercury toxicity and promoted Oryza sativa L growth. C. geniculata P1 stood out for increasing the host biomass by fourfold and reducing the negative effects of the metal on photosynthesis. Assembling and annotation of Aspergillus sp. A31 and C. geniculata P1 genomes resulted in 28.60 Mb (CG% 53.1; 10,312 coding DNA sequences) and 32.92 Mb (CG% 50.72; 8,692 coding DNA sequences), respectively. Twelve and 27 genomes of Curvularia/Bipolaris and Aspergillus were selected for phylogenomic analyzes, respectively. Phylogenetic analysis inferred the separation of species from the genus Curvularia and Bipolaris into different clades, and the separation of species from the genus Aspergillus into three clades; the species were distinguished by occupied niche. The genomes had essential gene clusters for the adaptation of microorganisms to high metal concentrations, such as proteins of the phytoquelatin-metal complex (GO: 0090423), metal ion binders (GO: 0046872), ABC transporters (GO: 0042626), ATPase transporters (GO: 0016887), and genes related to response to reactive oxygen species (GO: 0000302) and oxidative stress (GO: 0006979). The results reported here help to understand the unique regulatory mechanisms of mercury tolerance and plant development.
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Potisek M, Likar M, Vogel-Mikuš K, Arčon I, Grdadolnik J, Regvar M. 1,8-dihydroxy naphthalene (DHN) - melanin confers tolerance to cadmium in isolates of melanised dark septate endophytes. ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY 2021; 222:112493. [PMID: 34265529 DOI: 10.1016/j.ecoenv.2021.112493] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/10/2021] [Revised: 06/10/2021] [Accepted: 07/03/2021] [Indexed: 05/25/2023]
Abstract
The contribution of 1,8-dihydroxy naphthalene (DHN) melanin to cadmium (Cd) tolerance in two dark septate endophytes (DSE) of the genus Cadophora with different melanin content was investigated in vitro. The DSE isolate Cad#148 with higher melanin content showed higher tolerance to Cd than the less melanised Cad#149. Melanin synthesis was significantly reduced by Cd in both isolates with uninhibited melanin synthesis, in a dose-dependent manner. Inhibition of melanin synthesis by tricyclazole reduced the relative growth of Cad#148 exposed to Cd and did not affect Cad#149. Cd accumulation was not altered by tricyclazole in the two isolates, but it increased catalase and reduced glutathione reductase activity in more melanised Cad#148, indicating higher stress levels. In contrast, in Cad#149 the enzyme activity was less affected by tricyclazole, indicating a more pronounced role of melanin-independent Cd tolerance mechanisms. Cd ligand environment in fungal mycelia was analysed by extended EXAFS (X-ray absorption fine structure). It revealed that Cd was mainly bound to O- and S-ligands, including hydroxyl, carboxyl, phosphate and thiol groups. A similar proportion of S- and O- ligands (~35% and ~65%) were found in both isolates with uninhibited melanin synthesis. Among O-ligands two types with Cd-O-C- and Cd-O-P- coordination were identified. Tricyclazole altered Cd-O- ligand environment in both fungal isolates by reducing the proportion of Cd-O-C- and increasing the proportion of Cd-O-P coordination. DHN-melanin, among other tolerance mechanisms, significantly contributes to Cd tolerance in more melanised DSE fungi by immobilising Cd to hydroxyl groups and maintaining the integrity of the fungal cell wall.
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Affiliation(s)
- Mateja Potisek
- Department of Biology, Biotechnical Faculty, University of Ljubljana, Večna pot 111, SI-1000 Ljubljana, Slovenia.
| | - Matevž Likar
- Department of Biology, Biotechnical Faculty, University of Ljubljana, Večna pot 111, SI-1000 Ljubljana, Slovenia
| | - Katarina Vogel-Mikuš
- Department of Biology, Biotechnical Faculty, University of Ljubljana, Večna pot 111, SI-1000 Ljubljana, Slovenia; Jožef Stefan Institute, Jamova 39, SI-1000 Ljubljana, Slovenia
| | - Iztok Arčon
- Jožef Stefan Institute, Jamova 39, SI-1000 Ljubljana, Slovenia; University of Nova Gorica, Vipavska 13, POB 301, SI-5001 Nova Gorica, Slovenia
| | - Jože Grdadolnik
- National Institute of Chemistry, Hajdrihova 19, SI-1000 Ljubljana, Slovenia
| | - Marjana Regvar
- Department of Biology, Biotechnical Faculty, University of Ljubljana, Večna pot 111, SI-1000 Ljubljana, Slovenia
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21
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Liu D, Zhu L, Li T, Zhao Z. Mutualism between Dark Septate Endophytes (DSEs) and their host plants under metal stress: a case study. ALL LIFE 2021. [DOI: 10.1080/26895293.2021.1954097] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/08/2023] Open
Affiliation(s)
- Di Liu
- State Key Laboratory of Conservation and Utilization for Bioresources in Yunnan, Yunnan University, Kunming, People’s Republic of China
| | - Lingling Zhu
- State Key Laboratory of Conservation and Utilization for Bioresources in Yunnan, Yunnan University, Kunming, People’s Republic of China
| | - Tao Li
- State Key Laboratory of Conservation and Utilization for Bioresources in Yunnan, Yunnan University, Kunming, People’s Republic of China
| | - Zhiwei Zhao
- State Key Laboratory of Conservation and Utilization for Bioresources in Yunnan, Yunnan University, Kunming, People’s Republic of China
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22
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Khan MIR, Chopra P, Chhillar H, Ahanger MA, Hussain SJ, Maheshwari C. Regulatory hubs and strategies for improving heavy metal tolerance in plants: Chemical messengers, omics and genetic engineering. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2021; 164:260-278. [PMID: 34020167 DOI: 10.1016/j.plaphy.2021.05.006] [Citation(s) in RCA: 14] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/16/2021] [Accepted: 05/03/2021] [Indexed: 05/28/2023]
Abstract
Heavy metal (HM) accumulation in the agricultural soil and its toxicity is a major threat for plant growth and development. HMs disrupt functional integrity of the plants, induces altered phenological and physiological responses and slashes down qualitative crop yield. Chemical messengers such as phytohormones, plant growth regulators and gasotransmitters play a crucial role in regulating plant growth and development under metal toxicity in plants. Understanding the intricate network of these chemical messengers as well as interactions of genes/metabolites/proteins associated with HM toxicity in plants is necessary for deciphering insights into the regulatory circuit involved in HM tolerance. The present review describes (a) the role of chemical messengers in HM-induced toxicity mitigation, (b) possible crosstalk between phytohormones and other signaling cascades involved in plants HM tolerance and (c) the recent advancements in biotechnological interventions including genetic engineering, genome editing and omics approaches to provide a step ahead in making of improved plant against HM toxicities.
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Affiliation(s)
| | | | | | | | - Sofi Javed Hussain
- Department of Botany, Government Degree College, Kokernag, Jammu & Kashmir, India
| | - Chirag Maheshwari
- Agricultural Energy and Power Division, ICAR-Central Institute of Agricultural Engineering, Bhopal, India
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Shadmani L, Jamali S, Fatemi A. Isolation, identification, and characterization of cadmium-tolerant endophytic fungi isolated from barley (Hordeum vulgare L.) roots and their role in enhancing phytoremediation. Braz J Microbiol 2021; 52:1097-1106. [PMID: 33871825 DOI: 10.1007/s42770-021-00493-4] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/18/2020] [Accepted: 04/07/2021] [Indexed: 10/21/2022] Open
Abstract
Four hundred endophytic fungi isolates with different colony morphologies were isolated from roots of Hordeum vulgare L. collected from un-engineered landfills (the measured cadmium was 0.9 mg kg-1) of Kermanshah province in West Iran. Based on morphology and phylogeny of DNA sequence data for the internal transcribed spacer (ITS) rDNA and comparing the sequences with that available in NCBI database, 11 isolates are identified as dark septate endophytes (DSE) including Alternaria alternata, Microdochium bolleyi, Bipolaris zeicola, Alternaria sp., and Pleosporales sp., and the other nine are not dark septate endophytes (non-DSE) including Fusarium redolens, Fusarium tricinctum, Fusarium monliforme, Clonostachys rosea, and Epicoccum nigrum. Tolerance of DSE and non-DSE strains for Cd were investigated in potato dextrose agar medium. Minimum inhibitory concentrations (MIC) of Cd from nitrate salt source (Cd (NO3)2) and EC50 were determined. The means of MIC and EC50 values for DSE fungi species were 1254.5 and 209.74 mg/kg, compared to 800 and 150.3 mg/kg for non-DSEs. Among the endophytic fungi isolated, Alternaria sp. (TBR5) and Bipolaris zeicola (Tw26) showed the highest tolerance to Cd with a MIC value of 2000 mg/L and 1800 mg/L, respectively. Barley plants were inoculated with TBR5 and Tw26 in Cd-added sands (0, 10, 30, 60 mg Cd/kg sand). In terms of Cd accumulation, our results showed that TBR5 and Tw26 inoculation increased the amount of Cd in the barley roots. TBR5 and Tw26 significantly improved (p < 0.05) plant growth in the presence of Cd by enhancing plant growth attributes such as chlorophyll content, root weight, plant length, fresh weight, and dry weight of plants. This is the first study on the abundance and identification of endophytic root fungi of barley in a cadmium-contaminated soil in Iran. The results of this study showed that DSE and non-DSE have the potential to improve the efficiency of phytoremediation.
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Affiliation(s)
- Leila Shadmani
- Department of Plant Protection, College of Agriculture, Razi University, Kermanshah, Iran
| | - Samad Jamali
- Department of Plant Protection, College of Agriculture, Razi University, Kermanshah, Iran.
| | - Akram Fatemi
- Department of Soil Science, College of Agriculture, Razi University, Kermanshah, Iran
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Dark-pigmented biodeteriogenic fungi in etruscan hypogeal tombs: New data on their culture-dependent diversity, favouring conditions, and resistance to biocidal treatments. Fungal Biol 2021; 125:609-620. [PMID: 34281654 DOI: 10.1016/j.funbio.2021.03.003] [Citation(s) in RCA: 21] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/05/2020] [Revised: 02/08/2021] [Accepted: 03/22/2021] [Indexed: 12/16/2022]
Abstract
Subterranean Cultural Heritage sites are frequently subject to biological colonization due to the high levels of humidity, even in conditions of low irradiance and oligotrophy. Here microorganisms form complex communities that may be dangerous through mineral precipitation, through the softening of materials or causing frequent surface discolorations. A reduction of contamination's sources along with the control of microclimatic conditions and biocide treatments (overall performed with benzalkonium chloride) are necessary to reduce microbial growths. Dark discolorations have been recorded in the painted Etruscan tombs of Tarquinia, two of which have been analyzed to collect taxonomical, physiological, and ecological information. Eighteen dark-pigmented fungi were isolated among a wider culturable fraction: nine from blackening areas and nine from door sealings, a possible route of contamination. Isolates belonged to three major groups: Chaetothyriales, Capnodiales (Family Cladosporiaceae), and Acremonium-like fungi. Exophiala angulospora and Cyphellophora olivacea, a novelty for hypogea, were identified, while others need further investigations as possible new taxa. The metabolic skills of the detected species showed their potential dangerousness for the materials. Their tolerance to benzalkonium chloride-based products suggested a certain favouring effect through the decreasing competitiveness of less resistant species. The type of covering of the dromos may influence the risk of outer contamination. Fungal occurrence can be favoured by root penetration.
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Yu Y, Teng Z, Mou Z, Lv Y, Li T, Chen S, Zhao D, Zhao Z. Melatonin confers heavy metal-induced tolerance by alleviating oxidative stress and reducing the heavy metal accumulation in Exophiala pisciphila, a dark septate endophyte (DSE). BMC Microbiol 2021; 21:40. [PMID: 33546601 PMCID: PMC7863494 DOI: 10.1186/s12866-021-02098-1] [Citation(s) in RCA: 16] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/11/2020] [Accepted: 01/26/2021] [Indexed: 12/17/2022] Open
Abstract
Background Melatonin (MT), ubiquitous in almost all organisms, functions as a free radical scavenger. Despite several reports on its role as an antioxidant in animals, plants, and some microorganisms, extensive studies in filamentous fungi are limited. Based upon the role of melatonin as an antioxidant, we investigated its role in heavy metal-induced stress tolerance in Exophiala pisciphila, a dark septate endophyte (DSE), by studying the underlying mechanisms in alleviating oxidative stress and reducing heavy metal accumulation. Results A significant decrease in malondialdehyde (MDA) and oxygen free radical (OFR) in E. pisciphila was recorded under Cd, Zn, and Pb stresses as compared to the control. Pretreatment of E. pisciphila with 200.0 μM exogenous melatonin significantly increased the activity of superoxide dismutase (SOD) under Zn and Pb stresses. Pretreatment with 200.0 μM melatonin also lowered Cd, Zn, and Pb concentrations significantly. Melatonin production was enhanced by Cd, Cu, and Zn after 2 d, and melatonin biosynthetic enzyme genes, E. pisciphila tryptophan decarboxylase (EpTDC1) and serotonin N-acetyltransferase (EpSNAT1), were transcriptionally upregulated. The overexpression of EpTDC1 and N-acetylserotonin O-methyltransferase (EpASMT1) in Escherichia coli and Arabidopsis thaliana enhanced its heavy metal-induced stress tolerance. The overexpression of EpTDC1 and EpASMT1 reduced the Cd accumulation in the whole A. thaliana plants, especially in the roots. Conclusions Melatonin conferred heavy metal-induced stress tolerance by alleviating oxidative stress, activating antioxidant enzyme SOD, and reducing heavy metal accumulation in E. pisciphila. Melatonin biosynthetic enzyme genes of E. pisciphila also played key roles in limiting excessive heavy metal accumulation in A. thaliana. These findings can be extended to understand the role of melatonin in other DSEs associated with economically important plants and help develop new strategies in sustainable agriculture practice where plants can grow in soils contaminated with heavy metals. Supplementary Information The online version contains supplementary material available at 10.1186/s12866-021-02098-1.
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Affiliation(s)
- Yang Yu
- State Key Laboratory for Conservation and Utilization of Bio-resources in Yunnan, Yunnan University, Kunming, China
| | - Zhaowei Teng
- Department of Orthopedics, The Sixth Affiliated Hospital of Kunming Medical University, Yuxi, Yunan, China.,Department of Orthopedics, The First people's Hospital of Yunnan Province, Kunming, China
| | - Zongmin Mou
- Biocontrol Engineering Research Center of Plant Disease and Pest, Yunnan University, Kunming, China.,Biocontrol Engineering Research Center of Crop Disease and Pest, Yunnan University, Kunming, China.,School of Ecology and Environmental Science, Yunnan University, Kunming, China
| | - Yan Lv
- Department of Orthopedics, The Sixth Affiliated Hospital of Kunming Medical University, Yuxi, Yunan, China.,Department of Orthopedics, The First people's Hospital of Yunnan Province, Kunming, China
| | - Tao Li
- State Key Laboratory for Conservation and Utilization of Bio-resources in Yunnan, Yunnan University, Kunming, China
| | - Suiyun Chen
- Biocontrol Engineering Research Center of Plant Disease and Pest, Yunnan University, Kunming, China.,Biocontrol Engineering Research Center of Crop Disease and Pest, Yunnan University, Kunming, China.,School of Ecology and Environmental Science, Yunnan University, Kunming, China
| | - Dake Zhao
- Biocontrol Engineering Research Center of Plant Disease and Pest, Yunnan University, Kunming, China. .,Biocontrol Engineering Research Center of Crop Disease and Pest, Yunnan University, Kunming, China. .,School of Ecology and Environmental Science, Yunnan University, Kunming, China.
| | - Zhiwei Zhao
- State Key Laboratory for Conservation and Utilization of Bio-resources in Yunnan, Yunnan University, Kunming, China.
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26
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Jia H, Wang X, Wei T, Wang M, Liu X, Hua L, Ren X, Guo J, Li J. Exogenous salicylic acid regulates cell wall polysaccharides synthesis and pectin methylation to reduce Cd accumulation of tomato. ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY 2021; 207:111550. [PMID: 33254408 DOI: 10.1016/j.ecoenv.2020.111550] [Citation(s) in RCA: 38] [Impact Index Per Article: 12.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/21/2020] [Revised: 07/24/2020] [Accepted: 10/20/2020] [Indexed: 05/21/2023]
Abstract
Cadmium (Cd) is harmful to plant growth and can be easily transferred from soil to plants. Plant cell wall plays important role in preventing Cd from entering cells. Salicylic acid (SA) mediated defense response increases plant resistance to heavy metals. In this study, all tomato seedlings were pre-treated with 100 μM SA for 3 d, then seedlings were used to analyze the role of SA in regulating plant cell wall resistance to Cd stress. The results showed that exogenous SA significantly reduced Cd accumulation in tomato plants and changed Cd distribution. By analyzing the cell wall composition, it was found cellulose, hemicellulose, pectin, and lignin were induced by SA. Interestingly, the content of Cd in pectin decreased by SA pretreatment, however it was increased in cellulose. Gene expression analysis showed SA up-regulated the expression level of lignin and cellulose synthase genes, but down-regulated the expression of pectin methylesterase related genes. In addition, SA down-regulated the activity of pectin methylesterase. These results indicated that SA pretreatment up-regulated cell wall polysaccharide synthesis and related gene expression to thicken the cell wall and block Cd from passing through. Furthermore, SA decreased pectin methylesterase activity and content to reduce cell wall Cd accumulation and change the Cd partition ratio.
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Affiliation(s)
- HongLei Jia
- School of Environmental Science and Engineering, Shaanxi University of Science & Technology, Xi'an 710021, PR China
| | - XiaoHong Wang
- School of Environmental Science and Engineering, Shaanxi University of Science & Technology, Xi'an 710021, PR China
| | - Ting Wei
- School of Environmental Science and Engineering, Shaanxi University of Science & Technology, Xi'an 710021, PR China
| | - Min Wang
- School of Environmental Science and Engineering, Shaanxi University of Science & Technology, Xi'an 710021, PR China
| | - Xun Liu
- School of Environmental Science and Engineering, Shaanxi University of Science & Technology, Xi'an 710021, PR China
| | - Li Hua
- School of Environmental Science and Engineering, Shaanxi University of Science & Technology, Xi'an 710021, PR China
| | - XinHao Ren
- School of Environmental Science and Engineering, Shaanxi University of Science & Technology, Xi'an 710021, PR China
| | - JunKang Guo
- School of Environmental Science and Engineering, Shaanxi University of Science & Technology, Xi'an 710021, PR China.
| | - Jisheng Li
- College of Life Sciences, Northwest A&F University, Yangling, Shaanxi 712100, PR China.
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27
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Chen XL, Sun MC, Chong SL, Si JP, Wu LS. Transcriptomic and Metabolomic Approaches Deepen Our Knowledge of Plant-Endophyte Interactions. FRONTIERS IN PLANT SCIENCE 2021; 12:700200. [PMID: 35154169 PMCID: PMC8828500 DOI: 10.3389/fpls.2021.700200] [Citation(s) in RCA: 19] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/25/2021] [Accepted: 12/22/2021] [Indexed: 05/10/2023]
Abstract
In natural systems, plant-symbiont-pathogen interactions play important roles in mitigating abiotic and biotic stresses in plants. Symbionts have their own special recognition ways, but they may share some similar characteristics with pathogens based on studies of model microbes and plants. Multi-omics technologies could be applied to study plant-microbe interactions, especially plant-endophyte interactions. Endophytes are naturally occurring microbes that inhabit plants, but do not cause apparent symptoms in them, and arise as an advantageous source of novel metabolites, agriculturally important promoters, and stress resisters in their host plants. Although biochemical, physiological, and molecular investigations have demonstrated that endophytes confer benefits to their hosts, especially in terms of promoting plant growth, increasing metabolic capabilities, and enhancing stress resistance, plant-endophyte interactions consist of complex mechanisms between the two symbionts. Further knowledge of these mechanisms may be gained by adopting a multi-omics approach. The involved interaction, which can range from colonization to protection against adverse conditions, has been investigated by transcriptomics and metabolomics. This review aims to provide effective means and ways of applying multi-omics studies to solve the current problems in the characterization of plant-microbe interactions, involving recognition and colonization. The obtained results should be useful for identifying the key determinants in such interactions and would also provide a timely theoretical and material basis for the study of interaction mechanisms and their applications.
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28
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Leng Y, Li Y, Wen Y, Zhao H, Wang Q, Li SW. Transcriptome analysis provides molecular evidences for growth and adaptation of plant roots in cadimium-contaminated environments. ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY 2020; 204:111098. [PMID: 32798749 DOI: 10.1016/j.ecoenv.2020.111098] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/25/2020] [Revised: 07/25/2020] [Accepted: 07/28/2020] [Indexed: 06/11/2023]
Abstract
Cadmium (Cd) is a detrimental element that can be toxic to plants. The physiological and biochemical responses of plants to Cd stress have been extensively studied, but the molecular mechanisms remain unclear. The present study showed that Cd severely inhibited the growth of roots and shoots and reduced plant biomass of mung bean seedlings. To further investigate the gene profiles and molecular processes in response Cd stress, transcriptome analyses of mung bean roots exposed to 100 μM Cd for 1, 5, and 9 days were performed. Cd treatment significantly decreased global gene expression levels at 5 and 9 d compared with the control. A total of 6737, 10279, and 9672 differentially expressed genes (DEGs) were identified in the 1-, 5-, and 9-day Cd-treated root tissues compared with the controls, respectively. Based on the analysis of DEG function annotation and enrichment, a pattern of mung bean roots response to Cd stress was proposed. The processes detoxification and antioxidative defense were involved in the early response of mung bean roots to Cd. Cd stress downregulated the expressions of a series of genes involved in cell wall biosynthesis, cell division, DNA replication and repair, and photosynthesis, while genes involved in signal transduction and regulation, transporters, secondary metabolisms, defense systems, and mitochondrial processes were upregulated in response to Cd, which might be contributed to the improvement of plant tolerance. Our results provide some novel insights into the molecular processes for growth and adaption of mung bean roots in response to Cd and many candidate genes for further biotechnological manipulations to improve plant tolerance to heavy metals.
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Affiliation(s)
- Yan Leng
- School of Chemical and Biological Engineering, School of Environmental and Municipal Engineering, Lanzhou Jiaotong University, Lanzhou, 730070, China
| | - Yi Li
- School of Chemical and Biological Engineering, School of Environmental and Municipal Engineering, Lanzhou Jiaotong University, Lanzhou, 730070, China
| | - Ya Wen
- School of Chemical and Biological Engineering, School of Environmental and Municipal Engineering, Lanzhou Jiaotong University, Lanzhou, 730070, China
| | - Hui Zhao
- School of Chemical and Biological Engineering, School of Environmental and Municipal Engineering, Lanzhou Jiaotong University, Lanzhou, 730070, China
| | - Qiang Wang
- School of Chemical and Biological Engineering, School of Environmental and Municipal Engineering, Lanzhou Jiaotong University, Lanzhou, 730070, China
| | - Shi-Weng Li
- School of Chemical and Biological Engineering, School of Environmental and Municipal Engineering, Lanzhou Jiaotong University, Lanzhou, 730070, China.
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29
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Comparative transcriptome analysis reveals candidate genes related to cadmium accumulation and tolerance in two almond mushroom (Agaricus brasiliensis) strains with contrasting cadmium tolerance. PLoS One 2020; 15:e0239617. [PMID: 32991614 PMCID: PMC7523953 DOI: 10.1371/journal.pone.0239617] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/08/2020] [Accepted: 09/10/2020] [Indexed: 12/28/2022] Open
Abstract
Cadmium (Cd) is a toxic metal occurring in the environment naturally. Almond mushroom (Agaricus brasiliensis) is a well-known cultivated edible and medicinal mushroom. In the past few decades, Cd accumulation in A.brasiliensis has received increasing attention. However, the molecular mechanisms of Cd-accumulation in A. brasiliensis are still unclear. In this paper, a comparative transcriptome of two A.brasiliensis strains with contrasting Cd accumulation and tolerance was performed to identify Cd-responsive genes possibly responsible for low Cd-accumulation and high Cd-tolerance. Using low Cd-accumulating and Cd-tolerant (J77) and high Cd-accumulating and Cd-sensitive (J1) A.brasiliensis strains, we investigated 0, 2 and 5 mg L-1 Cd-effects on mycelium growth, Cd-accumulation and transcriptome revealed by RNA-Seq. A total of 57,884 unigenes were obtained. Far less Cd-responsive genes were identified in J77 mycelia than those in J1 mycelia (e.g., ABC transporters, ZIP Zn transporter, Glutathione S-transferase and Cation efflux (CE) family). The higher Cd-accumulation in J1 mycelia might be due to Cd-induced upregulation of ZIP Zn transporter. Cd impaired cell wall, cell cycle, DNA replication and repair, thus decreasing J1 mycelium growth. Cd-stimulated production of sulfur-containing compounds, polysaccharides, organic acids, trehalose, ATP and NADPH, and sequestration of Cd might be adaptive responses of J1 mycelia to the increased Cd-accumulation. DNA replication and repair had better stability under 2 mg L-1 Cd, but greater positive modifications under 5 mg L-1 Cd. Better stability of DNA replication and repair, better cell wall and cell cycle stability might account for the higher Cd-tolerance of J77 mycelia. Our findings provide a comprehensive set of DEGs influenced by Cd stress; and shed light on molecular mechanism of A.brasiliensis Cd accumulation and Cd tolerance.
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30
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Effects of root endophytic fungus, Microdochium bolleyi on cadmium uptake, translocation and tolerance by Hordeum vulgare L. Biologia (Bratisl) 2020. [DOI: 10.2478/s11756-020-00598-5] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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31
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Duarte LFDA, Blasco J, Catharino MGM, Moreira EG, Trombini C, Nobre CR, Moreno BB, Abessa DMDS, Pereira CDS. Lead toxicity on a sentinel species subpopulation inhabiting mangroves with different status conservation. CHEMOSPHERE 2020; 251:126394. [PMID: 32155497 DOI: 10.1016/j.chemosphere.2020.126394] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/02/2020] [Revised: 02/27/2020] [Accepted: 02/28/2020] [Indexed: 06/10/2023]
Abstract
Lead is a priority pollutant introduced in the aquatic environment by different sources commonly located in estuarine regions, such as ports, marinas and industries. Environmental agencies around the world set the maximum allowable concentration of lead in effluents, surface water and sediment, but few studies reported its accumulation and chronic toxicity in mangrove benthic invertebrates using concentrations believed to be safe. In the case of Brazilian mangrove environments, Ucides cordatus is a crab species of choice to be used in bioaccumulation studies. We have assessed biomarkers' responses (DNA strand breaks, micronucleated cells, metallothioneins, enzymatic activity of aminolevulinic acid dehydratase and neutral red retention time) and the total bioaccumulation in six tissues of U. cordatus crabs resident to mangrove areas under different conservation status during a 28-day period bioassay. We also investigated Pb subcellular partition and biomarkers' responses using a supposedly safe concentration (10 μg L-1). During the Pb exposure, the highest concentration of Pb was observed in crab gills. Crabs also showed a high ability to allocate Pb in detoxified forms. Multivariate analysis pointed out that bioaccumulation (total, active and detoxified) is linked to biomarkers. Even in supposedly safe dosage, U. cordatus triggered its defense mechanisms expressing more metallothioneins and presented relevant cyto-genotoxic damage. Our data suggest the development of biological tolerance to Pb in crabs from polluted areas. Our results provided a new insight about lead toxicity even at concentrations considered environmentally safe, which could support new strategies to manage estuarine areas considering their respective conservation status.
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Affiliation(s)
- Luis Felipe de Almeida Duarte
- Universidade Federal de São Paulo, Departamento de Ciências do Mar, Campus Baixada Santista, Rua Maria Máximo, 168, Ponta da Praia, Santos, SP, 11030-100, Brazil.
| | - Julián Blasco
- Instituto de Ciencias Marinas de Andalucía (ICMAN), Campus Río San Pedro, s/n, Puerto Real, Cádiz, Spain.
| | - Marília Gabriela Miranda Catharino
- Instituto de Pesquisas Energéticas e Nucleares (IPEN - CNEN/SP), Av. Professor Lineu Prestes, 2242, Cidade Universitária, 05508-000, São Paulo, SP, Brazil.
| | - Edson Gonçalves Moreira
- Instituto de Pesquisas Energéticas e Nucleares (IPEN - CNEN/SP), Av. Professor Lineu Prestes, 2242, Cidade Universitária, 05508-000, São Paulo, SP, Brazil.
| | - Chiara Trombini
- Instituto de Ciencias Marinas de Andalucía (ICMAN), Campus Río San Pedro, s/n, Puerto Real, Cádiz, Spain.
| | - Caio Rodrigues Nobre
- Universidade Federal de São Paulo, Departamento de Ciências do Mar, Campus Baixada Santista, Rua Maria Máximo, 168, Ponta da Praia, Santos, SP, 11030-100, Brazil.
| | - Beatriz Barbosa Moreno
- Universidade Federal de São Paulo, Departamento de Ciências do Mar, Campus Baixada Santista, Rua Maria Máximo, 168, Ponta da Praia, Santos, SP, 11030-100, Brazil.
| | - Denis Moledo de Souza Abessa
- Universidade Estadual de São Paulo - UNESP, Center of Investigation on Aquatic Pollution and Ecotoxicology, Praça Infante Dom Henrique, s/n, 11330-900, São Vicente, SP, Brazil.
| | - Camilo Dias Seabra Pereira
- Universidade Federal de São Paulo, Departamento de Ciências do Mar, Campus Baixada Santista, Rua Maria Máximo, 168, Ponta da Praia, Santos, SP, 11030-100, Brazil; Universidade Santa Cecília, Laboratório de Ecotoxicologia, Rua Oswaldo Cruz, 266, Santos, SP, 11045-907, Brazil.
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32
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Berthelot C, Zegeye A, Gaber DA, Chalot M, Franken P, Kovács GM, Leyval C, Blaudez D. Unravelling the Role of Melanin in Cd and Zn Tolerance and Accumulation of Three Dark Septate Endophytic Species. Microorganisms 2020; 8:E537. [PMID: 32276491 PMCID: PMC7232325 DOI: 10.3390/microorganisms8040537] [Citation(s) in RCA: 16] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/12/2020] [Revised: 03/30/2020] [Accepted: 04/01/2020] [Indexed: 02/06/2023] Open
Abstract
Dark septate endophytes (DSEs) are often trace element (TE)-tolerant fungi and are abundant in TE-polluted environments. The production of melanin, a black polymer found in cell walls, was hypothesized by several authors to play a role in the TE tolerance of DSEs. To test this hypothesis, we established a series of experiments using albino strains and melanin inhibitors and examined the responses to Cd and Zn. Six DSEs belonging to genera Cadophora sp., Leptodontidium sp. and Phialophora mustea, were evaluated. The strains mainly produced 1,8-dihydroxynaphthalene (DHN) melanin whereas 3,4-dihydroxyphenylalanin melanin was also synthetized. Cd and Zn decreased melanin synthesis in most of the strains. A reduction in melanin concentration in hyphae through the use of tricyclazole, an inhibitor of DHN-melanin synthesis, did not reduce the tolerance of the strains to Cd and Zn. Similarly, albino mutants of Leptodontidium sp. were not more sensitive to Cd and Zn than the WT strain. Moreover, tricyclazole-treated colonies accumulated less Cd but more Zn compared to untreated colonies. The Cd and Zn contents of Leptodontidium albino strains were variable and similar to that of the WT. The results suggest that melanin production is not an important functional trait that contributes to Cd and Zn tolerance, but might contribute to Cd accumulation.
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Affiliation(s)
- Charlotte Berthelot
- Université de Lorraine, CNRS, LIEC, F-54000 Nancy, France
- CTIFL, Centre de Carquefou, F-44483 Carquefou, France
| | - Asfaw Zegeye
- Université de Lorraine, CNRS, LIEC, F-54000 Nancy, France
| | - Dalia A. Gaber
- Botany and Microbiology Department, Faculty of Sciences, Assiut University, Assiut 71515, Egypt
- Leibniz Institute for Vegetable and Ornamental Crops, 14979 Groβbeeren, Germany
| | - Michel Chalot
- Université de Bourgogne-Franche-Comté, CNRS, Laboratoire Chrono-Environnement, F-25211 Montbéliard, France
- Université de Lorraine, F-54000 Nancy, France
| | - Philipp Franken
- Leibniz Institute for Vegetable and Ornamental Crops, 14979 Groβbeeren, Germany
- Erfurt Research Centre for Horticultural Crops, University of Applied Sciences Erfurt, 99090 Erfurt, Germany
| | - Gábor M. Kovács
- Department of Plant Anatomy, Institute of Biology, Eötvös Loránd University, 1117 Budapest, Hungary
- Plant Protection Institute, Centre for Agricultural Research, 1022 Budapest, Hungary
| | - Corinne Leyval
- Université de Lorraine, CNRS, LIEC, F-54000 Nancy, France
| | - Damien Blaudez
- Université de Lorraine, CNRS, LIEC, F-54000 Nancy, France
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33
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Hou L, Yu J, Zhao L, He X. Dark Septate Endophytes Improve the Growth and the Tolerance of Medicago sativa and Ammopiptanthus mongolicus Under Cadmium Stress. Front Microbiol 2020; 10:3061. [PMID: 32047481 PMCID: PMC6997539 DOI: 10.3389/fmicb.2019.03061] [Citation(s) in RCA: 37] [Impact Index Per Article: 9.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/07/2019] [Accepted: 12/18/2019] [Indexed: 01/27/2023] Open
Abstract
Although the ecological function of dark septate endophytes (DSEs) is well studied, little is known about the responses of the host plant to DSEs obtained from other plants, especially under conditions of heavy metal stress. This study aimed to investigate how DSEs from a heavy-metal habitat affect non-host plants in cadmium (Cd) stress soils, which then provides a basis for the application of DSEs in the cultivation of different plant and soil remediation strategies for polluted ecosystems. We isolated and identified two species of DSE (Acrocalymma vagum and Scytalidium lignicola) inhabiting the roots of Ilex chinensis (host plant) which are grown in metal-polluted habitats. Then, the Cd stress tolerance of the DSEs was tested using a pure culture of which the Cd concentration has been adjusted. Subsequently, we examined the performance of non-host plants (Medicago sativa and Ammopiptanthus mongolicus) which were inoculated with DSEs under Cd stress in a growth chamber. The results indicated that the two DSEs could grow under Cd stress in vitro, even when not exhibiting high levels of tolerance to Cd. The superoxide dismutase (SOD), malondialdehyde (MDA), glutathione (GSH), soluble protein, and melanin of the DSE fungi reached maximal levels at concentrations of 30-60 mg Cd/L, indicating the important preventive strategies adopted by the DSE fungi in environments contaminated by Cd. Despite a decreased biomass of DSE hyphae with enhanced Cd concentrations, the accumulation of Cd in the DSE hyphae tended to show an increasing trend. Both DSEs were effective colonizers of the non-host plants. A. vagum and S. lignicola inoculation significantly promoted the biomass and the root architecture of the two non-host plants under Cd stress. A. vagum inoculation increased the total nitrogen (TN) of A. mongolicus, whereas inoculation with S. lignicola significantly increased the organic carbon (OC) of M. sativa. In particular, the DSE inoculation significantly improved the accumulation of Cd in plant tissues under Cd stress, demonstrating a potential application in the bio-remediation of heavy-metal-pollution areas. Our findings suggest that the DSE inoculation improved the root growth and nutrient absorption of non-host plants, altered the soil Cd concentration, and facilitated plant growth and survival under Cd stress. These results contribute to a better understanding of DSE-plant interactions in habitats contaminated by heavy metals.
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Affiliation(s)
| | | | | | - Xueli He
- College of Life Sciences, Hebei University, Baoding, China
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Jin Z, Deng S, Wen Y, Jin Y, Pan L, Zhang Y, Black T, Jones KC, Zhang H, Zhang D. Application of Simplicillium chinense for Cd and Pb biosorption and enhancing heavy metal phytoremediation of soils. THE SCIENCE OF THE TOTAL ENVIRONMENT 2019; 697:134148. [PMID: 31479903 DOI: 10.1016/j.scitotenv.2019.134148] [Citation(s) in RCA: 16] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/18/2019] [Revised: 08/25/2019] [Accepted: 08/26/2019] [Indexed: 05/27/2023]
Abstract
Phytoremediation is an effective approach to control soil heavy metal pollution. This study isolated a fungus strain from soils contaminated by cadmium (Cd) and lead (Pb) in Zhalong Wetland (China), which was identified as Simplicillium chinense QD10 via both genotypic and phenotypic analysis. The performance and mechanism of S. chinense QD10 in Cd and Pb adsorption was unraveled by morphological analysis and biosorption test, and its roles in ameliorating phytoremediation by Phragmites communis were tested in pot-experiments. Cd biosorption was attributed to the formation of Cd-chelate, whereas Pb was predominantly adsorbed by extracellular polymeric substances. Metal biosorption followed Langmuir isotherm, and the maximum biosorption capacity was 88.5 and 57.8 g/kg for Cd and Pb, respectively. Colonized in soils, such biosorption behavior of S. chinense QD10 can generate gradients of available Cr or Pb and drive their enrichment. Accordingly, S. chinense QD10 amendment significantly enhanced the phytoextraction of Cd and Pb by P. communis, possibly attributing to rhizospheric enrichment of Cd or Pb and defending effects on plants, explained by the significant removal of acid-extractable and reducible metals in soils and the increase of Cd and Pb content in P. communis tissues. The present study explored the mechanisms of S. chinense QD10 in Cd and Pb biosorption and proved its potential in ameliorating the phytoremediation performance at metal contaminated sites.
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Affiliation(s)
- Zhongmin Jin
- College of Agriculture, Forestry and Life Science, Qiqihar University, Qiqihar 161006, PR China; Lancaster Environment Centre, Lancaster University, Lancaster LA1 2YW, United Kingdom
| | - Songqiang Deng
- Research Institute for Environmental Innovation (Suzhou), Tsinghua, Suzhou 215163, PR China
| | - Yuchen Wen
- College of Agriculture, Forestry and Life Science, Qiqihar University, Qiqihar 161006, PR China
| | - Yifeng Jin
- College of Agriculture, Forestry and Life Science, Qiqihar University, Qiqihar 161006, PR China
| | - Lin Pan
- College of Agriculture, Forestry and Life Science, Qiqihar University, Qiqihar 161006, PR China
| | - Yanfu Zhang
- College of Agriculture, Forestry and Life Science, Qiqihar University, Qiqihar 161006, PR China
| | - Tom Black
- Lancaster Environment Centre, Lancaster University, Lancaster LA1 2YW, United Kingdom
| | - Kevin C Jones
- Lancaster Environment Centre, Lancaster University, Lancaster LA1 2YW, United Kingdom
| | - Hao Zhang
- Lancaster Environment Centre, Lancaster University, Lancaster LA1 2YW, United Kingdom
| | - Dayi Zhang
- School of Environment, Tsinghua University, Beijing 100084, PR China.
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Cao GH, He S, Chen D, Li T, Zhao ZW. EpABC Genes in the Adaptive Responses of Exophiala pisciphila to Metal Stress: Functional Importance and Relation to Metal Tolerance. Appl Environ Microbiol 2019; 85:e01844-19. [PMID: 31540987 PMCID: PMC6856334 DOI: 10.1128/aem.01844-19] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/11/2019] [Accepted: 09/14/2019] [Indexed: 11/20/2022] Open
Abstract
Exophiala pisciphila is one of the dominant dark septate endophytes (DSEs) colonizing metal-polluted slag heaps in southwest China. It shows numerous super-metal-tolerant characteristics, but the molecular mechanisms involved remain largely unknown. In the present study, the functional roles of a specific set of ATP-binding cassette (ABC) transporters in E. pisciphila were characterized. In total, 26 EpABC genes belonging to 6 subfamilies (ABCA to ABCG) were annotated in previous transcriptome sequencing libraries, and all were regulated by metal ions (Pb, Zn, and Cd), which was dependent on the metal species and/or concentrations tested. The results from the heterologous expression of 3 representative EpABC genes confirmed that the expression of EpABC2.1, EpABC3.1, or EpABC4.1 restored the growth of metal-sensitive mutant Saccharomyces cerevisiae strains and significantly improved the tolerance of Arabidopsis thaliana to Pb, Zn, and Cd. Interestingly, the expression of the 3 EpABC genes further altered metal (Pb, Zn, and Cd) uptake and accumulation and promoted growth by alleviating the inhibitory activity in yeast and thale cress caused by toxic ions. These functions along with their vacuolar location suggest that the 3 EpABC transporters may enhance the detoxification of vacuolar compartmentation via transport activities across their membranes. In conclusion, the 26 annotated EpABC transporters may play a major role in maintaining the homeostasis of various metal ions in different cellular compartments, conferring an extreme adaptative advantage to E. pisciphila in metal-polluted slag heaps.IMPORTANCE Many ABC transporters and their functions have been identified in animals and plants. However, little is known about ABC genes in filamentous fungi, especially DSEs, which tend to dominantly colonize the roots of plants growing in stressed environments. Our results deepen the understanding of the function of the ABC genes of a super-metal-tolerant DSE (E. pisciphila) in enhancing its heavy metal resistance and detoxification. Furthermore, the genetic resources of DSEs, e.g., numerous EpABC genes, especially from super-metal-tolerant strains in heavy metal-polluted environments, can be directly used for transgenic applications to improve tolerance and phytoextraction potential.
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Affiliation(s)
- Guan-Hua Cao
- State Key Laboratory of Conservation and Utilization for Bioresources in Yunnan, Yunnan University, Kunming, Yunnan, China
- School of Traditional Chinese Medicine, Yunnan University of Chinese Medicine, Kunming, Yunnan, China
| | - Sen He
- School of Traditional Chinese Medicine, Yunnan University of Chinese Medicine, Kunming, Yunnan, China
| | - Di Chen
- School of Traditional Chinese Medicine, Yunnan University of Chinese Medicine, Kunming, Yunnan, China
| | - Tao Li
- State Key Laboratory of Conservation and Utilization for Bioresources in Yunnan, Yunnan University, Kunming, Yunnan, China
| | - Zhi-Wei Zhao
- State Key Laboratory of Conservation and Utilization for Bioresources in Yunnan, Yunnan University, Kunming, Yunnan, China
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Baghaie AH, Jabari AG. Effect of Nano Fe-oxide and Endophytic Fungus ( P. indica) on Petroleum Hydrocarbons Degradation in an Arsenic Contaminated Soil under Barley Cultivation. JOURNAL OF ENVIRONMENTAL HEALTH SCIENCE & ENGINEERING 2019; 17:853-861. [PMID: 32047637 PMCID: PMC6985438 DOI: 10.1007/s40201-019-00402-w] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/28/2019] [Accepted: 09/20/2019] [Indexed: 05/08/2023]
Abstract
BACKGROUND Heavy metals and petroleum hydrocarbon pollution are important environmental problems. This research was conducted to evaluate the effect of nano Fe-oxide and endophytic fungus (P. indica) on petroleum hydrocarbons degradation in an arsenic and petroleum hydrocarbons contaminated soil using barley plant. METHODS Treatments consisted of the presence (E+) and the absence (E-) of P.indica fungi, soil contaminated with As in the rates of 0 (AS0), 12 (AS12) and 24 (As24) mg As /kg of soil, and application of 0 (Fe0) and 1% (Fe1) (W/W) nano Fe-oxide. The plant used in this study was the barley plant. After 7 weeks, the root and shoot As concentration was measured using atomic absorption spectroscopy. The concentration of total soil petroleum hydrocarbon (TPHS) was measured using GC-mass. RESULTS Application of nano Fe-oxide in soil treated with 12 and 24 mg As/kg soil decreased root As concentration by 30 and 20.6%, respectively. The presence of P.indica caused a significant reduction in the shoot As concentration. With increasing shoot Fe concentration the shoot As concentration was decreased. The highest TPHS degradation was observed in non As-polluted soil that containing 1% (W/W) nano Fe-oxide in the presence of P.indica, while the lowest that was in As polluted soil (24 mg As/kg soil) without applying nano Fe-oxide and in the absence of P.indica. CONCLUSION Increasing soil sorption properties due to nano Fe-oxide application had significant effect on TPHS degradation in the presence of P.indica. However the role of soil condition on the amount of TPHS degradation cannot be ignored.
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Affiliation(s)
| | - Amir Ghafar Jabari
- Department of Microbiology, Arak Branch, Islamic Azad University, Arak, Iran
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Duarte LFDA, Moreno JB, Catharino MGM, Moreira EG, Trombini C, Pereira CDS. Mangrove metal pollution induces biological tolerance to Cd on a crab sentinel species subpopulation. THE SCIENCE OF THE TOTAL ENVIRONMENT 2019; 687:768-779. [PMID: 31412480 DOI: 10.1016/j.scitotenv.2019.06.039] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/20/2019] [Revised: 05/13/2019] [Accepted: 06/03/2019] [Indexed: 06/10/2023]
Abstract
Metals are persistent pollutants, able to accumulate in the biota and magnify in trophic web. In the specific case of cadmium contamination, it has been the subject of considerable interest in recent years because of its biological effects and it is one of major pollutant in estuarine areas. Ucides cordatus is considered a mangrove local sentinel crab species in Brazil and there are previous studies reporting crab subpopulations living from pristine to heavily metal impacted areas in São Paulo coast (Southeastern Brazil). Taking into account the background knowledge about these subpopulations, we proposed the hypothesis that crabs from a highly polluted mangrove (Cubatão - CUB) have developed biological tolerance to cadmium compared to animals from an Environmental Protected Area (Jureia - JUR). Aiming to verify this hypothesis, we have investigated total bioaccumulation and subcellular partition of Cd, besides biomarkers' responses during a long-term exposure bioassay (28 days, with weekly sampling) using a supposedly safe Cd concentration (0.0022 mg L-1). Specimens from the pristine area (JUR) accumulated higher total Cd, as such as in its biologically active form in gills. Animals living in the polluted site (CUB) presented higher amounts of Cd in the mainly detoxifying tissue (hepatopancreas), which could be considered a pathway leading to tolerance for this metal. Multivariate analysis indicated that bioaccumulation (active, detoxified and total Cd) is linked to geno-cytotoxic damages. CUB subpopulation was considered more tolerant since it presented proportionally less damage and more capacity to allocate Cd in the main detoxifying forms and tissues.
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Affiliation(s)
- Luis Felipe de Almeida Duarte
- Universidade Federal de São Paulo, Departamento de Ciências do Mar, Campus Baixada Santista, Rua Maria Máximo, 168, Ponta da Praia, Santos, SP 11030-100, Brazil.
| | - Julián Blasco Moreno
- Instituto de Ciencias Marinas de Andalucía (ICMAN), Campus Río San Pedro, s/n, Puerto Real, Cádiz, Spain.
| | - Marília Gabriela Miranda Catharino
- Instituto de Pesquisas Energéticas e Nucleares (IPEN - CNEN/SP), Av. Professor Lineu Prestes, 2242, Cidade Universitária, 05508-000 São Paulo, SP, Brazil
| | - Edson Gonçalves Moreira
- Instituto de Pesquisas Energéticas e Nucleares (IPEN - CNEN/SP), Av. Professor Lineu Prestes, 2242, Cidade Universitária, 05508-000 São Paulo, SP, Brazil.
| | - Chiara Trombini
- Instituto de Ciencias Marinas de Andalucía (ICMAN), Campus Río San Pedro, s/n, Puerto Real, Cádiz, Spain.
| | - Camilo Dias Seabra Pereira
- Universidade Federal de São Paulo, Departamento de Ciências do Mar, Campus Baixada Santista, Rua Maria Máximo, 168, Ponta da Praia, Santos, SP 11030-100, Brazil.
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Jan R, Khan MA, Asaf S, Lubna, Lee IJ, Kim KM. Metal Resistant Endophytic Bacteria Reduces Cadmium, Nickel Toxicity, and Enhances Expression of Metal Stress Related Genes with Improved Growth of Oryza Sativa, via Regulating Its Antioxidant Machinery and Endogenous Hormones. PLANTS (BASEL, SWITZERLAND) 2019; 8:E363. [PMID: 31547575 PMCID: PMC6844085 DOI: 10.3390/plants8100363] [Citation(s) in RCA: 68] [Impact Index Per Article: 13.6] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/18/2019] [Revised: 09/09/2019] [Accepted: 09/19/2019] [Indexed: 11/18/2022]
Abstract
The tolerance of plant growth-promoting endophytes (PGPEs) against various concentrations of cadmium (Cd) and nickel (Ni) was investigated. Two glutathione-producing bacterial strains (Enterobacter ludwigii SAK5 and Exiguobacterium indicum SA22) were screened for Cd and Ni accumulation and tolerance in contaminated media, which showed resistance up to 1.0 mM. Both strains were further evaluated by inoculating specific plants with the bacteria for five days prior to heavy metal treatment (0.5 and 1.0 mM). The enhancement of biomass and growth attributes such as the root length, shoot length, root fresh weight, shoot fresh weight, and chlorophyll content were compared between treated inoculated plants and treated non-inoculated plants. Both strains significantly increased the accumulation of Cd and Ni in inoculated plants. The accumulation of both heavy metals was higher in the roots than in the shoots, however; Ni accumulation was greater than Cd. Heavy metal stress-responsive genes such as OsGST, OsMTP1, and OsPCS1 were significantly upregulated in treated non-inoculated plants compared with treated inoculated plants, suggesting that both strains reduced heavy metal stress. Similarly, abscisic acid (ABA) was increased with increased heavy metal concentration; however, it was reduced in inoculated plants compared with non-inoculated plants. Salicylic acid (SA) was found to exert synergistic effects with ABA. The application of suitable endophytic bacteria can protect against heavy metal hyperaccumulation by enhancing detoxification mechanisms.
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Affiliation(s)
- Rahmatullah Jan
- School of Applied Biosciences, Kyungpook National University, Daegu 41566, Korea; (R.J.); (M.A.K.); (I.-J.L.)
| | - Muhammad Aaqil Khan
- School of Applied Biosciences, Kyungpook National University, Daegu 41566, Korea; (R.J.); (M.A.K.); (I.-J.L.)
| | - Sajjad Asaf
- Natural and Medical Science Research Center, University of Nizwa 616, Nizwa 611, Oman;
| | - Lubna
- Department of Botany, Garden Campus, Abdul Wali Khan University, Mardan 23200, Pakistan;
| | - In-Jung Lee
- School of Applied Biosciences, Kyungpook National University, Daegu 41566, Korea; (R.J.); (M.A.K.); (I.-J.L.)
| | - Kyung Min Kim
- School of Applied Biosciences, Kyungpook National University, Daegu 41566, Korea; (R.J.); (M.A.K.); (I.-J.L.)
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Domka AM, Rozpaądek P, Turnau K. Are Fungal Endophytes Merely Mycorrhizal Copycats? The Role of Fungal Endophytes in the Adaptation of Plants to Metal Toxicity. Front Microbiol 2019; 10:371. [PMID: 30930857 PMCID: PMC6428775 DOI: 10.3389/fmicb.2019.00371] [Citation(s) in RCA: 27] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/19/2018] [Accepted: 02/12/2019] [Indexed: 12/04/2022] Open
Abstract
The contamination of soil with toxic metals is a worldwide problem, resulting in the disruption of plant vegetation and subsequent crop production. Thus, remediation techniques for contaminated soil and water remain a constant interest of researchers. Phytoremediation, which utilizes plants to remove or stabilize contaminants, is perceived to be a promising strategy. However, phytoremediation's use to date is limited because of constraints associated with such factors as slow plant growth rates or metal toxicity. Microbial-assisted phytoremediation serves as an alternative solution, since the impact of the microbial symbionts on plant growth and stress tolerance has frequently been described. Endophytic fungi occur in almost every plant in the natural environment and contribute to plant growth and tolerance to environmental stress conditions. Although this group of symbiotic fungi was found to form association with a wide range of hosts, including the non-mycorrhizal Brassicaceae metallophytes, their role in the response of plants to metal toxicity has not been thoroughly elucidated to date. This review summarizes the current knowledge regarding the role of endophytic fungi in the tolerance of plants to toxic metals and highlights the similarities and differences between this group of symbiotic fungi and mycorrhizal associations in terms of the survival of the plant during heavy metal stress.
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Affiliation(s)
| | - Piotr Rozpaądek
- Malopolska Centre of Biotechnology, Jagiellonian University, Kraków, Poland
| | - Katarzyna Turnau
- Institute of Environmental Sciences, Jagiellonian University, Kraków, Poland
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Li Q, Huang W, Xiong C, Zhao J. Transcriptome analysis reveals the role of nitric oxide in Pleurotus eryngii responses to Cd 2+ stress. CHEMOSPHERE 2018; 201:294-302. [PMID: 29525657 DOI: 10.1016/j.chemosphere.2018.03.011] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/26/2017] [Revised: 02/12/2018] [Accepted: 03/03/2018] [Indexed: 05/19/2023]
Abstract
Pleurotus eryngii is widely cultivated in China. However, our understanding of its transcriptional response to heavy metal stress and the underlying mechanism of nitric oxide (NO) in enhancing its tolerance to heavy metals is limited. In the present study, RNA-seq was used to generate large transcript sequences from P. eryngii exposed to cadmium chloride (CdCl2) and exogenous NO. A total of 45,833 unigenes were assembled from the P. eryngii transcriptome, of which 32,333 (70.54%) unigenes matched known proteins in the nr database. Transcriptional analysis revealed that putative genes encoding heat shock proteins (HSPs) and genes participating in glycerolipid metabolism and steroid biosynthesis were significantly up-regulated in P. eryngii exposed to 50 μM Cd (P < 0.05). P. eryngii mycelia exposed to extremely high levels of heavy metals showed an increase in biomass when exogenous NO was added to the culture. The collaboration of putative oxidoreductase, dehydrogenase, reductase, transferase genes and transcription factors such as "GTPase activator activity", "transcription factor complex", "ATP binding", "GTP binding", and "enzyme activator activity", which were significantly up-regulated in samples induced by exogenous NO, contributed to the enhancement of P. eryngii tolerance to extremely high levels of heavy metals. The study provides a new insight into the transcriptional response of P. eryngii to extremely high levels of heavy metals and the mechanism of NO in enhancing heavy metal tolerance.
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Affiliation(s)
- Qiang Li
- Key Laboratory of Bio-Resource and Eco-Environment of Ministry of Education, College of Life Sciences, Sichuan University, Chengdu, 610065, Sichuan, PR China; Biotechnology and Nuclear Technology Research Institute, Sichuan Academy of Agricultural Sciences, Chengdu, 610061, Sichuan, PR China
| | - Wenli Huang
- Biotechnology and Nuclear Technology Research Institute, Sichuan Academy of Agricultural Sciences, Chengdu, 610061, Sichuan, PR China
| | - Chuan Xiong
- Biotechnology and Nuclear Technology Research Institute, Sichuan Academy of Agricultural Sciences, Chengdu, 610061, Sichuan, PR China
| | - Jian Zhao
- Key Laboratory of Bio-Resource and Eco-Environment of Ministry of Education, College of Life Sciences, Sichuan University, Chengdu, 610065, Sichuan, PR China.
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Jalmi SK, Bhagat PK, Verma D, Noryang S, Tayyeba S, Singh K, Sharma D, Sinha AK. Traversing the Links between Heavy Metal Stress and Plant Signaling. FRONTIERS IN PLANT SCIENCE 2018; 9:12. [PMID: 29459874 PMCID: PMC5807407 DOI: 10.3389/fpls.2018.00012] [Citation(s) in RCA: 128] [Impact Index Per Article: 21.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/16/2017] [Accepted: 01/03/2018] [Indexed: 05/17/2023]
Abstract
Plants confront multifarious environmental stresses widely divided into abiotic and biotic stresses, of which heavy metal stress represents one of the most damaging abiotic stresses. Heavy metals cause toxicity by targeting crucial molecules and vital processes in the plant cell. One of the approaches by which heavy metals act in plants is by over production of reactive oxygen species (ROS) either directly or indirectly. Plants act against such overdose of metal in the environment by boosting the defense responses like metal chelation, sequestration into vacuole, regulation of metal intake by transporters, and intensification of antioxidative mechanisms. This response shown by plants is the result of intricate signaling networks functioning in the cell in order to transmit the extracellular stimuli into an intracellular response. The crucial signaling components involved are calcium signaling, hormone signaling, and mitogen activated protein kinase (MAPK) signaling that are discussed in this review. Apart from signaling components other regulators like microRNAs and transcription factors also have a major contribution in regulating heavy metal stress. This review demonstrates the key role of MAPKs in synchronously controlling the other signaling components and regulators in metal stress. Further, attempts have been made to focus on metal transporters and chelators that are regulated by MAPK signaling.
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Affiliation(s)
| | | | | | | | | | | | | | - Alok K. Sinha
- Plant Signaling, National Institute of Plant Genome Research, New Delhi, India
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Shahabivand S, Parvaneh A, Aliloo AA. Root endophytic fungus Piriformospora indica affected growth, cadmium partitioning and chlorophyll fluorescence of sunflower under cadmium toxicity. ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY 2017; 145:496-502. [PMID: 28783599 DOI: 10.1016/j.ecoenv.2017.07.064] [Citation(s) in RCA: 51] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/07/2017] [Revised: 07/17/2017] [Accepted: 07/21/2017] [Indexed: 05/05/2023]
Abstract
Cadmium (Cd) pollution in the soil threatens the quality of environmental health, and deleteriously affects physiological activities of crops. Symbiosis of endophytic fungi with various plants is a promising manner to improving numerous plant characteristics and remediating heavy metal-polluted soils. In this pot experiment, the influence of root endophyte fungus Piriformospora indica on growth, physiological parameters and organs Cd accumulation in sunflower cv. Zaria plants under the toxic levels of Cd (0, 40, 80 and 120mg/kg soil) were studied. Increasing Cd concentration in the soil reduced growth parameters, chlorophyll (Chl) a and Chl b contents, and Fv/Fm and ETR (electron transport rate) values, but increased root, stem and leaf Cd accumulation, and proline content. The presence of P. indica significantly enhanced growth, Chl a, Chl b and proline contents, and Fv/Fm and ETR values. Compared to non-inoculated ones, P. indica-inoculated plants had higher Cd accumulation in root, whereas lower Cd accumulation in stem and leaf. The present study strongly supports the established ability of P. indica to alleviate Cd toxicity by improving the physiological status in sunflower. Furthermore, this endophyte fungus can be useful for Cd phyto-stabilization in sunflower roots in contaminated soils.
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Affiliation(s)
- Saleh Shahabivand
- Department of Biology, Faculty of Science, University of Maragheh, Maragheh, Iran.
| | - Azar Parvaneh
- Department of Biology, Faculty of Science, University of Maragheh, Maragheh, Iran
| | - Ali Asghar Aliloo
- Department of Agronomy, Faculty of Agriculture, University of Maragheh, Maragheh, Iran
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Berthelot C, Perrin Y, Leyval C, Blaudez D. Melanization and ageing are not drawbacks for successful agro-transformation of dark septate endophytes. Fungal Biol 2017; 121:652-663. [DOI: 10.1016/j.funbio.2017.04.004] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/17/2017] [Revised: 04/12/2017] [Accepted: 04/19/2017] [Indexed: 11/29/2022]
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Pietro-Souza W, Mello IS, Vendruscullo SJ, da Silva GF, da Cunha CN, White JF, Soares MA. Endophytic fungal communities of Polygonum acuminatum and Aeschynomene fluminensis are influenced by soil mercury contamination. PLoS One 2017; 12:e0182017. [PMID: 28742846 PMCID: PMC5526616 DOI: 10.1371/journal.pone.0182017] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/23/2017] [Accepted: 07/11/2017] [Indexed: 12/31/2022] Open
Abstract
The endophytic fungal communities of Polygonum acuminatum and Aeschynomene fluminensis were examined with respect to soil mercury (Hg) contamination. Plants were collected in places with and without Hg+2 for isolation and identification of their endophytic root fungi. We evaluated frequency of colonization, number of isolates and richness, indices of diversity and similarity, functional traits (hydrolytic enzymes, siderophores, indoleacetic acid, antibiosis and metal tolerance) and growth promotion of Aeschynomene fluminensis inoculated with endophytic fungi on soil with mercury. The frequency of colonization, structure and community function, as well as the abundant distribution of taxa of endophytic fungi were influenced by mercury contamination, with higher endophytic fungi in hosts in soil with mercury. The presence or absence of mercury in the soil changes the profile of the functional characteristics of the endophytic fungal community. On the other hand, tolerance of lineages to multiple metals is not associated with contamination. A. fluminensis depends on its endophytic fungi, since plants free of endophytic fungi grew less than expected due to mercury toxicity. In contrast plants containing certain endophytic fungi showed good growth in soil containing mercury, even exceeding growth of plants cultivated in soil without mercury. The data obtained confirm the hypothesis that soil contamination by mercury alters community structure of root endophytic fungi in terms of composition, abundance and species richness. The inoculation of A. fluminensis with certain strains of stress tolerant endophytic fungi contribute to colonization and establishment of the host and may be used in processes that aim to improve phytoremediation of soils with toxic concentrations of mercury.
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Affiliation(s)
- William Pietro-Souza
- Department of Botany and Ecology, Laboratory of Biotechnology and Microbial Ecology, Institute of Biosciences, Federal University of Mato Grosso, Cuiabá, Mato Grosso, Brazil
- Department of Botany and Ecology, Institute of Biosciences, Federal University of Mato Grosso, Brazil
| | - Ivani Souza Mello
- Department of Botany and Ecology, Laboratory of Biotechnology and Microbial Ecology, Institute of Biosciences, Federal University of Mato Grosso, Cuiabá, Mato Grosso, Brazil
- Department of Botany and Ecology, Institute of Biosciences, Federal University of Mato Grosso, Brazil
| | | | | | - Cátia Nunes da Cunha
- Department of Botany and Ecology, Institute of Biosciences, Federal University of Mato Grosso, Brazil
| | - James Francis White
- Department of Plant Biology, Rutgers University, New Brunswick, NJ, United States of America
| | - Marcos Antônio Soares
- Department of Botany and Ecology, Laboratory of Biotechnology and Microbial Ecology, Institute of Biosciences, Federal University of Mato Grosso, Cuiabá, Mato Grosso, Brazil
- Department of Botany and Ecology, Institute of Biosciences, Federal University of Mato Grosso, Brazil
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Wężowicz K, Rozpądek P, Turnau K. Interactions of arbuscular mycorrhizal and endophytic fungi improve seedling survival and growth in post-mining waste. MYCORRHIZA 2017; 27:499-511. [PMID: 28317065 PMCID: PMC5486607 DOI: 10.1007/s00572-017-0768-x] [Citation(s) in RCA: 34] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/18/2016] [Accepted: 03/10/2017] [Indexed: 05/08/2023]
Abstract
The impact of fungal endophytes and the modulating role of arbuscular mycorrhizal fungi (AMF) on the vitality of Verbascum lychnitis, grown in the laboratory in a substratum from a post-mining waste dump was investigated. We report that inoculation with a single endophyte negatively affected the survival rate and biomass production of most of the plant-endophyte consortia examined. The introduction of arbuscular mycorrhiza fungi into this setup (dual inoculation) had a beneficial effect on both biomass yield and survivability. V. lychnitis co-inoculated with AMF and Cochliobolus sativus, Diaporthe sp., and Phoma exigua var. exigua yielded the highest biomass, exceeding the growth rate of both non-inoculated and AMF plants. AMF significantly improved the photosynthesis rates of the plant-endophyte consortia, which were negatively affected by inoculation with single endophytes. The abundance of PsbC, a photosystem II core protein previously shown to be upregulated in plants colonized by Epichloe typhina, exhibited a significant increase when the negative effect of the fungal endophyte was attenuated by AMF.
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Affiliation(s)
- Katarzyna Wężowicz
- Institute of Environmental Sciences, Jagiellonian University, Gronostajowa 7, 30-387, Kraków, Poland
| | - Piotr Rozpądek
- Malopolska Centre of Biotechnology, Jagiellonian University, Gronostajowa 7A, 30-387, Kraków, Poland.
| | - Katarzyna Turnau
- Institute of Environmental Sciences, Jagiellonian University, Gronostajowa 7, 30-387, Kraków, Poland
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Khan AR, Ullah I, Waqas M, Park GS, Khan AL, Hong SJ, Ullah R, Jung BK, Park CE, Ur-Rehman S, Lee IJ, Shin JH. Host plant growth promotion and cadmium detoxification in Solanum nigrum, mediated by endophytic fungi. ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY 2017; 136:180-188. [PMID: 27931714 DOI: 10.1016/j.ecoenv.2016.03.014] [Citation(s) in RCA: 53] [Impact Index Per Article: 7.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/20/2015] [Revised: 03/04/2016] [Accepted: 03/08/2016] [Indexed: 05/13/2023]
Abstract
Current investigation conducted to evaluate the associated fungal endophyte interactions of a Cd hyper-accumulator Solanum nigrum Korean ecotype under varying concentrations of Cd. Two indole-3-acetic acid (IAA) producing fungal strains, RSF-4L and RSF-6L, isolated from the leaves of S. nigrum, were initially screened for Cd tolerance and accumulation potential. In terms of dry biomass production, the strain RSF-6L showed higher tolerance and accumulation capacity for Cd toxicity in comparison to RSF-4L. Therefore, RSF-6L was applied in vivo to S. nigrum and grown for six weeks under Cd concentrations of 0, 10, and 30mgKg-1 of dry sand. The effect of fungal inoculation assessed by plant physiological responses, endogenous biochemical regulations, and Cd profile in different tissues. Significant increase were observed in plant growth attributes such as shoot length, root length, dry biomass, leaf area, and chlorophyll contents in inoculated RSF-6L plants in comparison to non-inoculated plants with or without Cd contamination. RSF-6L inoculation decreased uptake of Cd in roots and above ground parts, as evidenced by a low bio-concentration factor (BCF) and improved tolerance index (TI). However, Cd concentration in the leaves remained the same for inoculated and non-inoculated plants under Cd spiking. Fungal inoculation protected the host plants, as evidenced by low peroxidase (POD) and polyphenol peroxidase (PPO) activities and high catalase (CAT) activity. Application of appropriate fungal inoculation that can improve tolerance mechanisms of hyper-accumulators and reduce Cd uptake can be recommended for phyto-stabilisation/immobilisation of heavy metals in crop fields.
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Affiliation(s)
- Abdur Rahim Khan
- School of Applied Biosciences, College of Agriculture and Life Sciences, Kyungpook National University, Daegu 41566, Republic of Korea
| | - Ihsan Ullah
- School of Applied Biosciences, College of Agriculture and Life Sciences, Kyungpook National University, Daegu 41566, Republic of Korea; Institute of Biotechnology and Genetic Engineering, The University of Agriculture, Peshawar, Pakistan
| | - Muhammad Waqas
- School of Applied Biosciences, College of Agriculture and Life Sciences, Kyungpook National University, Daegu 41566, Republic of Korea
| | - Gun-Seok Park
- School of Applied Biosciences, College of Agriculture and Life Sciences, Kyungpook National University, Daegu 41566, Republic of Korea
| | - Abdul Latif Khan
- UoN Chair of Oman's Medicinal Plants & Marine Natural Products, University of Nizwa, 616 Nizwa, Oman
| | - Sung-Jun Hong
- School of Applied Biosciences, College of Agriculture and Life Sciences, Kyungpook National University, Daegu 41566, Republic of Korea
| | - Rehman Ullah
- Department of Botany, University of Peshawar, Peshawar, Pakistan
| | - Byung Kwon Jung
- School of Applied Biosciences, College of Agriculture and Life Sciences, Kyungpook National University, Daegu 41566, Republic of Korea
| | - Chang Eon Park
- School of Applied Biosciences, College of Agriculture and Life Sciences, Kyungpook National University, Daegu 41566, Republic of Korea
| | - Shafiq Ur-Rehman
- Department of Plant Sciences, Kohat University of Science and Technology (KUST), Kohat 26000, Pakistan
| | - In-Jung Lee
- School of Applied Biosciences, College of Agriculture and Life Sciences, Kyungpook National University, Daegu 41566, Republic of Korea
| | - Jae-Ho Shin
- School of Applied Biosciences, College of Agriculture and Life Sciences, Kyungpook National University, Daegu 41566, Republic of Korea.
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Miura S, Himaki T, Takahashi J, Iwahashi H. THE ROLE OF TRANSCRIPTOMICS: PHYSIOLOGICAL EQUIVALENCE BASED ON GENE EXPRESSION PROFILES. ACTA ACUST UNITED AC 2017. [DOI: 10.7831/ras.5.21] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Affiliation(s)
- Shiori Miura
- The United Graduate School of Agricultural Science, Gifu University
| | - Takehiro Himaki
- The United Graduate School of Agricultural Science, Gifu University
| | - Junko Takahashi
- Biomedical Research Institute, National Institute of Advanced Industrial Science and Technology (AIST)
| | - Hitoshi Iwahashi
- The United Graduate School of Agricultural Science, Gifu University
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48
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Dark septate endophytic fungi of native plants along an altitudinal gradient in the Brazilian Atlantic forest. FUNGAL ECOL 2016. [DOI: 10.1016/j.funeco.2016.01.008] [Citation(s) in RCA: 38] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
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Wei YF, Li T, Li LF, Wang JL, Cao GH, Zhao ZW. Functional and transcript analysis of a novel metal transporter gene EpNramp from a dark septate endophyte (Exophiala pisciphila). ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY 2016; 124:363-368. [PMID: 26595509 DOI: 10.1016/j.ecoenv.2015.11.008] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/08/2015] [Revised: 11/04/2015] [Accepted: 11/05/2015] [Indexed: 05/13/2023]
Abstract
Various metal transporters mediate sub-cellular sequestration of diverse metal ions, contribute to cellular metal tolerance, and control metal partitioning, particularly under conditions of high rates of metal influx into organisms. In the current study, a ubiquitous and evolutionary conserved metal transporter gene, homology to natural resistance associated macrophage protein (Nramp), was cloned from a metal-tolerant isolate of dark septate endophyte (DSE, Exophiala pisciphila), and its functional and transcript characterization were analyzed. The full-length Nramp gene from E. pisciphila (named EpNramp) was 1716 bp and expected to encode a polypeptide of 571 amino acid residues. EpNramp fused to green fluorescent protein suggested that EpNramp was a plasma membrane metal transporter, which was consistent with the results of bioinformatics analysis with 11 transmembrane domains. Yeast functional complementation revealed that EpNramp could complement the growth defect of Fe-uptake yeast mutant (fet3fet4 double mutant) by mediating the transport of Fe(2+). Expression of EpNramp increased Cd(2+) sensitivity and Cd(2+) accumulation in yeast. In addition, qPCR data revealed that E. pisciphila significantly down-regulated EpNramp expression with elevated Cd(2+) exposure. Altogether, EpNramp is a bivalent cation transporter localized in cell membrane, which is necessary for efficient translocation of both Fe and Cd, and its activities partly attributed to the tolerance of DSE to toxic and excessive Cd(2+) supplements.
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Affiliation(s)
- Yun-Fang Wei
- Key Laboratory of Conservation and Utilization for Bioresources and Key Laboratory of Microbial Diversity in Southwest China, Ministry of Education, Yunnan University, Kunming, 650091 Yunnan, PR China; Kunming Police Dog Base of the Ministry of Public Security, Kunming, 650204 Yunnan, PR China.
| | - Tao Li
- Key Laboratory of Conservation and Utilization for Bioresources and Key Laboratory of Microbial Diversity in Southwest China, Ministry of Education, Yunnan University, Kunming, 650091 Yunnan, PR China.
| | - Ling-Fei Li
- College of Food Science and Technology, Yunnan Agricultural University, Kunming, 650201 Yunnan, PR China.
| | - Jun-Ling Wang
- Key Laboratory of Conservation and Utilization for Bioresources and Key Laboratory of Microbial Diversity in Southwest China, Ministry of Education, Yunnan University, Kunming, 650091 Yunnan, PR China.
| | - Guan-Hua Cao
- Key Laboratory of Conservation and Utilization for Bioresources and Key Laboratory of Microbial Diversity in Southwest China, Ministry of Education, Yunnan University, Kunming, 650091 Yunnan, PR China.
| | - Zhi-Wei Zhao
- Key Laboratory of Conservation and Utilization for Bioresources and Key Laboratory of Microbial Diversity in Southwest China, Ministry of Education, Yunnan University, Kunming, 650091 Yunnan, PR China.
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Mosa KA, Saadoun I, Kumar K, Helmy M, Dhankher OP. Potential Biotechnological Strategies for the Cleanup of Heavy Metals and Metalloids. FRONTIERS IN PLANT SCIENCE 2016; 7:303. [PMID: 27014323 PMCID: PMC4791364 DOI: 10.3389/fpls.2016.00303] [Citation(s) in RCA: 129] [Impact Index Per Article: 16.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/26/2015] [Accepted: 02/25/2016] [Indexed: 05/18/2023]
Abstract
Global mechanization, urbanization, and various natural processes have led to the increased release of toxic compounds into the biosphere. These hazardous toxic pollutants include a variety of organic and inorganic compounds, which pose a serious threat to the ecosystem. The contamination of soil and water are the major environmental concerns in the present scenario. This leads to a greater need for remediation of contaminated soils and water with suitable approaches and mechanisms. The conventional remediation of contaminated sites commonly involves the physical removal of contaminants, and their disposition. Physical remediation strategies are expensive, non-specific and often make the soil unsuitable for agriculture and other uses by disturbing the microenvironment. Owing to these concerns, there has been increased interest in eco-friendly and sustainable approaches such as bioremediation, phytoremediation and rhizoremediation for the cleanup of contaminated sites. This review lays particular emphasis on biotechnological approaches and strategies for heavy metal and metalloid containment removal from the environment, highlighting the advances and implications of bioremediation and phytoremediation as well as their utilization in cleaning-up toxic pollutants from contaminated environments.
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Affiliation(s)
- Kareem A. Mosa
- Department of Applied Biology, College of Sciences, University of SharjahSharjah, UAE
- Department of Biotechnology, Faculty of Agriculture, Al-Azhar UniversityCairo, Egypt
- *Correspondence: Kareem A. Mosa,
| | - Ismail Saadoun
- Department of Applied Biology, College of Sciences, University of SharjahSharjah, UAE
| | - Kundan Kumar
- Department of Biological Sciences, Birla Institute of Technology and Science Pilani, K. K. Birla Goa CampusGoa, India
| | - Mohamed Helmy
- The Donnelly Centre for Cellular and Biomedical Research, University of Toronto, TorontoON, Canada
| | - Om Parkash Dhankher
- Stockbridge School of Agriculture, University of MassachusettsAmherst, MA, USA
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