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Insanally MN, Albanna BF, Toth J, DePasquale B, Fadaei SS, Gupta T, Lombardi O, Kuchibhotla K, Rajan K, Froemke RC. Contributions of cortical neuron firing patterns, synaptic connectivity, and plasticity to task performance. Nat Commun 2024; 15:6023. [PMID: 39019848 PMCID: PMC11255273 DOI: 10.1038/s41467-024-49895-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/19/2023] [Accepted: 06/20/2024] [Indexed: 07/19/2024] Open
Abstract
Neuronal responses during behavior are diverse, ranging from highly reliable 'classical' responses to irregular 'non-classically responsive' firing. While a continuum of response properties is observed across neural systems, little is known about the synaptic origins and contributions of diverse responses to network function, perception, and behavior. To capture the heterogeneous responses measured from auditory cortex of rodents performing a frequency recognition task, we use a novel task-performing spiking recurrent neural network incorporating spike-timing-dependent plasticity. Reliable and irregular units contribute differentially to task performance via output and recurrent connections, respectively. Excitatory plasticity shifts the response distribution while inhibition constrains its diversity. Together both improve task performance with full network engagement. The same local patterns of synaptic inputs predict spiking response properties of network units and auditory cortical neurons from in vivo whole-cell recordings during behavior. Thus, diverse neural responses contribute to network function and emerge from synaptic plasticity rules.
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Affiliation(s)
- Michele N Insanally
- Department of Otolaryngology, University of Pittsburgh School of Medicine, Pittsburgh, PA, 15213, USA.
- Pittsburgh Hearing Research Center, University of Pittsburgh, Pittsburgh, PA, 15213, USA.
- Department of Neurobiology, University of Pittsburgh School of Medicine, Pittsburgh, PA, 15213, USA.
- Department of Bioengineering, University of Pittsburgh, Pittsburgh, PA, 15213, USA.
| | - Badr F Albanna
- Department of Otolaryngology, University of Pittsburgh School of Medicine, Pittsburgh, PA, 15213, USA
| | - Jade Toth
- Department of Otolaryngology, University of Pittsburgh School of Medicine, Pittsburgh, PA, 15213, USA
- Pittsburgh Hearing Research Center, University of Pittsburgh, Pittsburgh, PA, 15213, USA
| | - Brian DePasquale
- Department of Biomedical Engineering, Boston University, Boston, MA, 02215, USA
- Center for Systems Neuroscience, Boston University, Boston, MA, 02215, USA
| | - Saba Shokat Fadaei
- Skirball Institute for Biomolecular Medicine, New York University Grossman School of Medicine, New York, NY, 10016, USA
- Neuroscience Institute, New York University Grossman School of Medicine, New York, NY, 10016, USA
- Department of Otolaryngology, New York University Grossman School of Medicine, New York, NY, 10016, USA
- Department of Neuroscience, New York University Grossman School of Medicine, New York, NY, 10016, USA
- Department of Physiology, New York University Grossman School of Medicine, New York, NY, 10016, USA
| | - Trisha Gupta
- Department of Otolaryngology, University of Pittsburgh School of Medicine, Pittsburgh, PA, 15213, USA
- Pittsburgh Hearing Research Center, University of Pittsburgh, Pittsburgh, PA, 15213, USA
| | - Olivia Lombardi
- Department of Otolaryngology, University of Pittsburgh School of Medicine, Pittsburgh, PA, 15213, USA
- Pittsburgh Hearing Research Center, University of Pittsburgh, Pittsburgh, PA, 15213, USA
| | - Kishore Kuchibhotla
- Department of Psychological and Brain Sciences, Johns Hopkins University, Baltimore, MD, 21218, USA
- Department of Neuroscience, Johns Hopkins University, Baltimore, MD, 21218, USA
- Department of Biomedical Engineering, Johns Hopkins University, Baltimore, MD, 21218, USA
| | - Kanaka Rajan
- Department of Neurobiology, Harvard Medical School, Boston, MA, 02115, USA
- Kempner Institute, Harvard University, Cambridge, MA, 02138, USA
| | - Robert C Froemke
- Skirball Institute for Biomolecular Medicine, New York University Grossman School of Medicine, New York, NY, 10016, USA.
- Neuroscience Institute, New York University Grossman School of Medicine, New York, NY, 10016, USA.
- Department of Otolaryngology, New York University Grossman School of Medicine, New York, NY, 10016, USA.
- Department of Neuroscience, New York University Grossman School of Medicine, New York, NY, 10016, USA.
- Department of Physiology, New York University Grossman School of Medicine, New York, NY, 10016, USA.
- Center for Neural Science, New York University, New York, NY, 10003, USA.
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2
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Atlan G, Matosevich N, Peretz-Rivlin N, Marsh-Yvgi I, Zelinger N, Chen E, Kleinman T, Bleistein N, Sheinbach E, Groysman M, Nir Y, Citri A. Claustrum neurons projecting to the anterior cingulate restrict engagement during sleep and behavior. Nat Commun 2024; 15:5415. [PMID: 38926345 PMCID: PMC11208603 DOI: 10.1038/s41467-024-48829-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/08/2022] [Accepted: 05/14/2024] [Indexed: 06/28/2024] Open
Abstract
The claustrum has been linked to attention and sleep. We hypothesized that this reflects a shared function, determining responsiveness to stimuli, which spans the axis of engagement. To test this hypothesis, we recorded claustrum population dynamics from male mice during both sleep and an attentional task ('ENGAGE'). Heightened activity in claustrum neurons projecting to the anterior cingulate cortex (ACCp) corresponded to reduced sensory responsiveness during sleep. Similarly, in the ENGAGE task, heightened ACCp activity correlated with disengagement and behavioral lapses, while low ACCp activity correlated with hyper-engagement and impulsive errors. Chemogenetic elevation of ACCp activity reduced both awakenings during sleep and impulsive errors in the ENGAGE task. Furthermore, mice employing an exploration strategy in the task showed a stronger correlation between ACCp activity and performance compared to mice employing an exploitation strategy which reduced task complexity. Our results implicate ACCp claustrum neurons in restricting engagement during sleep and goal-directed behavior.
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Affiliation(s)
- Gal Atlan
- The Edmond and Lily Safra Center for Brain Sciences, The Hebrew University of Jerusalem; Edmond J. Safra Campus, Givat Ram, Jerusalem, Israel
| | - Noa Matosevich
- Department of Physiology & Pharmacology, Faculty of Medical and Health Sciences, Tel Aviv University, Tel Aviv, Israel
- Sagol School of Neuroscience, Tel Aviv University, Tel Aviv, Israel
| | - Noa Peretz-Rivlin
- The Edmond and Lily Safra Center for Brain Sciences, The Hebrew University of Jerusalem; Edmond J. Safra Campus, Givat Ram, Jerusalem, Israel
| | - Idit Marsh-Yvgi
- The Alexander Silberman Institute of Life Science, Faculty of Science, The Hebrew University of Jerusalem; Edmond J. Safra Campus, Givat Ram, Jerusalem, Israel
| | - Noam Zelinger
- Department of Physiology & Pharmacology, Faculty of Medical and Health Sciences, Tel Aviv University, Tel Aviv, Israel
- Sagol School of Neuroscience, Tel Aviv University, Tel Aviv, Israel
| | - Eden Chen
- The Edmond and Lily Safra Center for Brain Sciences, The Hebrew University of Jerusalem; Edmond J. Safra Campus, Givat Ram, Jerusalem, Israel
| | - Timna Kleinman
- The Edmond and Lily Safra Center for Brain Sciences, The Hebrew University of Jerusalem; Edmond J. Safra Campus, Givat Ram, Jerusalem, Israel
| | - Noa Bleistein
- The Edmond and Lily Safra Center for Brain Sciences, The Hebrew University of Jerusalem; Edmond J. Safra Campus, Givat Ram, Jerusalem, Israel
- The Alexander Silberman Institute of Life Science, Faculty of Science, The Hebrew University of Jerusalem; Edmond J. Safra Campus, Givat Ram, Jerusalem, Israel
| | - Efrat Sheinbach
- The Edmond and Lily Safra Center for Brain Sciences, The Hebrew University of Jerusalem; Edmond J. Safra Campus, Givat Ram, Jerusalem, Israel
- The Alexander Silberman Institute of Life Science, Faculty of Science, The Hebrew University of Jerusalem; Edmond J. Safra Campus, Givat Ram, Jerusalem, Israel
| | - Maya Groysman
- The Edmond and Lily Safra Center for Brain Sciences, The Hebrew University of Jerusalem; Edmond J. Safra Campus, Givat Ram, Jerusalem, Israel
| | - Yuval Nir
- Department of Physiology & Pharmacology, Faculty of Medical and Health Sciences, Tel Aviv University, Tel Aviv, Israel
- Sagol School of Neuroscience, Tel Aviv University, Tel Aviv, Israel
- Department of Biomedical Engineering, Faculty of Engineering, Tel Aviv University, Tel Aviv, Israel
- The Sieratzki-Sagol Center for Sleep Medicine, Tel Aviv Sourasky Medical Center, Tel Aviv, Israel
- Sagol Brain Institute, Tel Aviv Sourasky Medical Center, Tel Aviv, Israel
| | - Ami Citri
- The Edmond and Lily Safra Center for Brain Sciences, The Hebrew University of Jerusalem; Edmond J. Safra Campus, Givat Ram, Jerusalem, Israel.
- The Alexander Silberman Institute of Life Science, Faculty of Science, The Hebrew University of Jerusalem; Edmond J. Safra Campus, Givat Ram, Jerusalem, Israel.
- Program in Child and Brain Development, Canadian Institute for Advanced Research; MaRS Centre, Toronto, ON, Canada.
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3
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Bays PM, Schneegans S, Ma WJ, Brady TF. Representation and computation in visual working memory. Nat Hum Behav 2024; 8:1016-1034. [PMID: 38849647 DOI: 10.1038/s41562-024-01871-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/29/2022] [Accepted: 03/22/2024] [Indexed: 06/09/2024]
Abstract
The ability to sustain internal representations of the sensory environment beyond immediate perception is a fundamental requirement of cognitive processing. In recent years, debates regarding the capacity and fidelity of the working memory (WM) system have advanced our understanding of the nature of these representations. In particular, there is growing recognition that WM representations are not merely imperfect copies of a perceived object or event. New experimental tools have revealed that observers possess richer information about the uncertainty in their memories and take advantage of environmental regularities to use limited memory resources optimally. Meanwhile, computational models of visuospatial WM formulated at different levels of implementation have converged on common principles relating capacity to variability and uncertainty. Here we review recent research on human WM from a computational perspective, including the neural mechanisms that support it.
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Affiliation(s)
- Paul M Bays
- Department of Psychology, University of Cambridge, Cambridge, UK
| | | | - Wei Ji Ma
- Center for Neural Science and Department of Psychology, New York University, New York, NY, USA
| | - Timothy F Brady
- Department of Psychology, University of California, San Diego, La Jolla, CA, USA.
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4
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Rich PD, Thiberge SY, Scott BB, Guo C, Tervo DGR, Brody CD, Karpova AY, Daw ND, Tank DW. Magnetic voluntary head-fixation in transgenic rats enables lifespan imaging of hippocampal neurons. Nat Commun 2024; 15:4154. [PMID: 38755205 PMCID: PMC11099169 DOI: 10.1038/s41467-024-48505-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/16/2023] [Accepted: 05/01/2024] [Indexed: 05/18/2024] Open
Abstract
The precise neural mechanisms within the brain that contribute to the remarkable lifetime persistence of memory are not fully understood. Two-photon calcium imaging allows the activity of individual cells to be followed across long periods, but conventional approaches require head-fixation, which limits the type of behavior that can be studied. We present a magnetic voluntary head-fixation system that provides stable optical access to the brain during complex behavior. Compared to previous systems that used mechanical restraint, there are no moving parts and animals can engage and disengage entirely at will. This system is failsafe, easy for animals to use and reliable enough to allow long-term experiments to be routinely performed. Animals completed hundreds of trials per session of an odor discrimination task that required 2-4 s fixations. Together with a reflectance fluorescence collection scheme that increases two-photon signal and a transgenic Thy1-GCaMP6f rat line, we are able to reliably image the cellular activity in the hippocampus during behavior over long periods (median 6 months), allowing us track the same neurons over a large fraction of animals' lives (up to 19 months).
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Affiliation(s)
- P Dylan Rich
- Princeton Neuroscience Institute, Princeton University, Princeton, NJ, USA.
| | | | - Benjamin B Scott
- Department of Psychological and Brain Sciences, Boston University, Boston, MA, USA
- Center for Systems Neuroscience, Boston University, Boston, MA, USA
- Neurophotonics Center, Boston University, Boston, MA, USA
| | - Caiying Guo
- Janelia Research Campus, Ashburn, VA, USA
- Howard Hughes Medical Institute, Ashburn, VA, USA
| | - D Gowanlock R Tervo
- Janelia Research Campus, Ashburn, VA, USA
- Howard Hughes Medical Institute, Ashburn, VA, USA
| | - Carlos D Brody
- Princeton Neuroscience Institute, Princeton University, Princeton, NJ, USA
- Howard Hughes Medical Institute, Princeton University, Princeton, NJ, USA
| | - Alla Y Karpova
- Janelia Research Campus, Ashburn, VA, USA
- Howard Hughes Medical Institute, Ashburn, VA, USA
| | - Nathaniel D Daw
- Princeton Neuroscience Institute, Princeton University, Princeton, NJ, USA
- Department of Psychology, Princeton University, Princeton, NJ, USA
| | - David W Tank
- Princeton Neuroscience Institute, Princeton University, Princeton, NJ, USA.
- Bezos Center for Neural Circuit Dynamics, Princeton University, Princeton, NJ, USA.
- Department of Molecular Biology, Princeton University, Princeton, NJ, USA.
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5
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El Hady A, Takahashi D, Sun R, Akinwale O, Boyd-Meredith T, Zhang Y, Charles AS, Brody CD. Chronic brain functional ultrasound imaging in freely moving rodents performing cognitive tasks. J Neurosci Methods 2024; 403:110033. [PMID: 38056633 PMCID: PMC10872377 DOI: 10.1016/j.jneumeth.2023.110033] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/01/2023] [Revised: 11/06/2023] [Accepted: 12/01/2023] [Indexed: 12/08/2023]
Abstract
BACKGROUND Functional ultrasound imaging (fUS) is an emerging imaging technique that indirectly measures neural activity via changes in blood volume. Chronic fUS imaging during cognitive tasks in freely moving animals faces multiple exceptional challenges: performing large durable craniotomies with chronic implants, designing behavioral experiments matching the hemodynamic timescale, stabilizing the ultrasound probe during freely moving behavior, accurately assessing motion artifacts, and validating that the animal can perform cognitive tasks while tethered. NEW METHOD We provide validated solutions for those technical challenges. In addition, we present standardized step-by-step reproducible protocols, procedures, and data processing pipelines. Finally, we present proof-of-concept analysis of brain dynamics during a decision making task. RESULTS We obtain stable recordings from which we can robustly decode task variables from fUS data over multiple months. Moreover, we find that brain wide imaging through hemodynamic response is nonlinearly related to cognitive variables, such as task difficulty, as compared to sensory responses previously explored. COMPARISON WITH EXISTING METHODS Computational pipelines in fUS are nascent and we present an initial development of a full processing pathway to correct and segment fUS data. CONCLUSIONS Our methods provide stable imaging and analysis of behavior with fUS that will enable new experimental paradigms in understanding brain-wide dynamics in naturalistic behaviors.
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Affiliation(s)
- Ahmed El Hady
- Princeton Neuroscience Institute, Princeton University, Princeton, United States; Center for advanced study of collective behavior, University of Konstanz, Germany; Max Planck Institute of Animal Behavior, Konstanz, Germany
| | - Daniel Takahashi
- Brain Institute, Federal University of Rio Grande do Norte, Natal, Brazil
| | - Ruolan Sun
- Department of Biomedical Engineering, John Hopkins University, Baltimore, United States
| | - Oluwateniola Akinwale
- Department of Biomedical Engineering, John Hopkins University, Baltimore, United States
| | - Tyler Boyd-Meredith
- Princeton Neuroscience Institute, Princeton University, Princeton, United States
| | - Yisi Zhang
- Princeton Neuroscience Institute, Princeton University, Princeton, United States
| | - Adam S Charles
- Department of Biomedical Engineering, John Hopkins University, Baltimore, United States; Mathematical Institute for Data Science, Kavli Neuroscience Discovery Institute & Center for Imaging Science, John Hopkins University, Baltimore, United States.
| | - Carlos D Brody
- Princeton Neuroscience Institute, Princeton University, Princeton, United States; Howard Hughes Medical Institute, Princeton University, Princeton, United States; Department of Molecular Biology, Princeton University, Princeton, United States.
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6
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Braun A, Donner TH. Adaptive biasing of action-selective cortical build-up activity by stimulus history. eLife 2023; 12:RP86740. [PMID: 38054952 DOI: 10.7554/elife.86740] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/07/2023] Open
Abstract
Decisions under uncertainty are often biased by the history of preceding sensory input, behavioral choices, or received outcomes. Behavioral studies of perceptual decisions suggest that such history-dependent biases affect the accumulation of evidence and can be adapted to the correlation structure of the sensory environment. Here, we systematically varied this correlation structure while human participants performed a canonical perceptual choice task. We tracked the trial-by-trial variations of history biases via behavioral modeling and of a neural signature of decision formation via magnetoencephalography (MEG). The history bias was flexibly adapted to the environment and exerted a selective effect on the build-up (not baseline level) of action-selective motor cortical activity during decision formation. This effect added to the impact of the current stimulus. We conclude that the build-up of action plans in human motor cortical circuits is shaped by dynamic prior expectations that result from an adaptive interaction with the environment.
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Affiliation(s)
- Anke Braun
- Section Computational Cognitive Neuroscience, Department of Neurophysiology and Pathophysiology, University Medical Center Hamburg-Eppendorf, Hamburg, Germany
- Charité - Universitätsmedizin Berlin, corporate member of Freie Universität Berlin and Humboldt-Universität zu Berlin, Department of Psychiatry and Neurosciences, Berlin, Germany
- Charité - Universitätsmedizin Berlin, corporate member of Freie Universität Berlin and Humboldt-Universität zu Berlin, Department of Child and Adolescent Psychiatry, Berlin, Germany
| | - Tobias H Donner
- Section Computational Cognitive Neuroscience, Department of Neurophysiology and Pathophysiology, University Medical Center Hamburg-Eppendorf, Hamburg, Germany
- Bernstein Center for Computational Neuroscience, Charité - Universitätsmedizin Berlin, Berlin, Germany
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7
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Thrower L, Dang W, Jaffe RG, Sun JD, Constantinidis C. Decoding working memory information from neurons with and without persistent activity in the primate prefrontal cortex. J Neurophysiol 2023; 130:1392-1402. [PMID: 37910532 PMCID: PMC11068397 DOI: 10.1152/jn.00290.2023] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/31/2023] [Revised: 10/24/2023] [Accepted: 10/24/2023] [Indexed: 11/03/2023] Open
Abstract
Persistent activity of neurons in the prefrontal cortex has been thought to represent the information maintained in working memory, though alternative models have challenged this idea. Theories that depend on the dynamic representation of information posit that stimulus information may be maintained by the activity pattern of neurons whose firing rate is not significantly elevated above their baseline during the delay period of working memory tasks. We thus tested the ability of neurons that do and do not generate persistent activity in the prefrontal cortex of monkeys to represent spatial and object information in working memory. Neurons that generated persistent activity represented more information about the stimuli in both spatial and object working memory tasks. The amount of information that could be decoded from neural activity depended on the choice of decoder and parameters used but neurons with persistent activity outperformed non-persistent neurons consistently. Averaged across all neurons and stimuli, the firing rate did not appear clearly elevated above baseline during the maintenance of neural activity particularly for object working memory; however, this grand average masked neurons that generated persistent activity selective for their preferred stimuli, which carried the majority of stimulus information. These results reveal that prefrontal neurons that generate persistent activity maintain information more reliably during working memory.NEW & NOTEWORTHY Competing theories suggest that neurons that generate persistent activity or do not are primarily responsible for the maintenance of information, particularly regarding object working memory. Although the two models have been debated on theoretical terms, direct comparison of empirical results has been lacking. Analysis of neural activity in a large database of prefrontal recordings revealed that neurons that generate persistent activity were primarily responsible for the maintenance of both spatial and object working memory.
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Affiliation(s)
- Lilianna Thrower
- Department of Biomedical Engineering, Vanderbilt University, Nashville, Tennessee, United States
| | - Wenhao Dang
- Department of Biomedical Engineering, Vanderbilt University, Nashville, Tennessee, United States
| | - Rye G Jaffe
- Department of Biomedical Engineering, Vanderbilt University, Nashville, Tennessee, United States
| | - Jasmine D Sun
- Department of Biomedical Engineering, Vanderbilt University, Nashville, Tennessee, United States
| | - Christos Constantinidis
- Department of Biomedical Engineering, Vanderbilt University, Nashville, Tennessee, United States
- Neuroscience Program, Vanderbilt University, Nashville, Tennessee, United States
- Department of Ophthalmology and Visual Sciences, Vanderbilt University Medical Center, Nashville, Tennessee, United States
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8
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Danskin BP, Hattori R, Zhang YE, Babic Z, Aoi M, Komiyama T. Exponential history integration with diverse temporal scales in retrosplenial cortex supports hyperbolic behavior. SCIENCE ADVANCES 2023; 9:eadj4897. [PMID: 38019904 PMCID: PMC10686558 DOI: 10.1126/sciadv.adj4897] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/29/2023] [Accepted: 10/27/2023] [Indexed: 12/01/2023]
Abstract
Animals use past experience to guide future choices. The integration of experiences typically follows a hyperbolic, rather than exponential, decay pattern with a heavy tail for distant history. Hyperbolic integration affords sensitivity to both recent environmental dynamics and long-term trends. However, it is unknown how the brain implements hyperbolic integration. We found that mouse behavior in a foraging task showed hyperbolic decay of past experience, but the activity of cortical neurons showed exponential decay. We resolved this apparent mismatch by observing that cortical neurons encode history information with heterogeneous exponential time constants that vary across neurons. A model combining these diverse timescales recreated the heavy-tailed, hyperbolic history integration observed in behavior. In particular, the time constants of retrosplenial cortex (RSC) neurons best matched the behavior, and optogenetic inactivation of RSC uniquely reduced behavioral history dependence. These results indicate that behavior-relevant history information is maintained across multiple timescales in parallel and that RSC is a critical reservoir of information guiding decision-making.
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Affiliation(s)
- Bethanny P. Danskin
- Department of Neurobiology, University of California San Diego, La Jolla, CA, USA
- Center for Neural Circuits and Behavior, University of California San Diego, La Jolla, CA, USA
- Department of Neurosciences, University of California San Diego, La Jolla, CA, USA
- Halıcıoğlu Data Science Institute, University of California San Diego, La Jolla, CA, USA
| | - Ryoma Hattori
- Department of Neurobiology, University of California San Diego, La Jolla, CA, USA
- Center for Neural Circuits and Behavior, University of California San Diego, La Jolla, CA, USA
- Department of Neurosciences, University of California San Diego, La Jolla, CA, USA
- Halıcıoğlu Data Science Institute, University of California San Diego, La Jolla, CA, USA
| | - Yu E. Zhang
- Department of Neurobiology, University of California San Diego, La Jolla, CA, USA
- Center for Neural Circuits and Behavior, University of California San Diego, La Jolla, CA, USA
- Department of Neurosciences, University of California San Diego, La Jolla, CA, USA
- Halıcıoğlu Data Science Institute, University of California San Diego, La Jolla, CA, USA
| | - Zeljana Babic
- Department of Neurobiology, University of California San Diego, La Jolla, CA, USA
- Center for Neural Circuits and Behavior, University of California San Diego, La Jolla, CA, USA
- Department of Neurosciences, University of California San Diego, La Jolla, CA, USA
- Halıcıoğlu Data Science Institute, University of California San Diego, La Jolla, CA, USA
| | - Mikio Aoi
- Department of Neurobiology, University of California San Diego, La Jolla, CA, USA
- Halıcıoğlu Data Science Institute, University of California San Diego, La Jolla, CA, USA
| | - Takaki Komiyama
- Department of Neurobiology, University of California San Diego, La Jolla, CA, USA
- Center for Neural Circuits and Behavior, University of California San Diego, La Jolla, CA, USA
- Department of Neurosciences, University of California San Diego, La Jolla, CA, USA
- Halıcıoğlu Data Science Institute, University of California San Diego, La Jolla, CA, USA
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9
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Zhang A, Zador AM. Neurons in the primary visual cortex of freely moving rats encode both sensory and non-sensory task variables. PLoS Biol 2023; 21:e3002384. [PMID: 38048367 PMCID: PMC10721203 DOI: 10.1371/journal.pbio.3002384] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/28/2022] [Revised: 12/14/2023] [Accepted: 10/17/2023] [Indexed: 12/06/2023] Open
Abstract
Neurons in primary visual cortex (area V1) are strongly driven by both sensory stimuli and non-sensory events. However, although the representation of sensory stimuli has been well characterized, much less is known about the representation of non-sensory events. Here, we characterize the specificity and organization of non-sensory representations in rat V1 during a freely moving visual decision task. We find that single neurons encode diverse combinations of task features simultaneously and across task epochs. Despite heterogeneity at the level of single neuron response patterns, both visual and nonvisual task variables could be reliably decoded from small neural populations (5 to 40 units) throughout a trial. Interestingly, in animals trained to make an auditory decision following passive observation of a visual stimulus, some but not all task features could also be decoded from V1 activity. Our results support the view that even in V1-the earliest stage of the cortical hierarchy-bottom-up sensory information may be combined with top-down non-sensory information in a task-dependent manner.
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Affiliation(s)
- Anqi Zhang
- Cold Spring Harbor Laboratory, Cold Spring Harbor, New York, United States of America
- Cold Spring Harbor Laboratory School of Biological Sciences, Cold Spring Harbor, New York, United States of America
| | - Anthony M. Zador
- Cold Spring Harbor Laboratory, Cold Spring Harbor, New York, United States of America
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10
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Stroud JP, Watanabe K, Suzuki T, Stokes MG, Lengyel M. Optimal information loading into working memory explains dynamic coding in the prefrontal cortex. Proc Natl Acad Sci U S A 2023; 120:e2307991120. [PMID: 37983510 PMCID: PMC10691340 DOI: 10.1073/pnas.2307991120] [Citation(s) in RCA: 7] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/15/2023] [Accepted: 09/29/2023] [Indexed: 11/22/2023] Open
Abstract
Working memory involves the short-term maintenance of information and is critical in many tasks. The neural circuit dynamics underlying working memory remain poorly understood, with different aspects of prefrontal cortical (PFC) responses explained by different putative mechanisms. By mathematical analysis, numerical simulations, and using recordings from monkey PFC, we investigate a critical but hitherto ignored aspect of working memory dynamics: information loading. We find that, contrary to common assumptions, optimal loading of information into working memory involves inputs that are largely orthogonal, rather than similar, to the late delay activities observed during memory maintenance, naturally leading to the widely observed phenomenon of dynamic coding in PFC. Using a theoretically principled metric, we show that PFC exhibits the hallmarks of optimal information loading. We also find that optimal information loading emerges as a general dynamical strategy in task-optimized recurrent neural networks. Our theory unifies previous, seemingly conflicting theories of memory maintenance based on attractor or purely sequential dynamics and reveals a normative principle underlying dynamic coding.
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Affiliation(s)
- Jake P. Stroud
- Computational and Biological Learning Lab, Department of Engineering, University of Cambridge, CambridgeCB2 1PZ, United Kingdom
| | - Kei Watanabe
- Graduate School of Frontier Biosciences, Osaka University, Osaka565-0871, Japan
| | - Takafumi Suzuki
- Center for Information and Neural Networks, National Institute of Communication and Information Technology, Osaka565-0871, Japan
| | - Mark G. Stokes
- Department of Experimental Psychology, University of Oxford, OxfordOX2 6GG, United Kingdom
- Oxford Centre for Human Brain Activity, Wellcome Centre for Integrative Neuroimaging, Department of Psychiatry, University of Oxford, OxfordOX3 9DU, United Kingdom
| | - Máté Lengyel
- Computational and Biological Learning Lab, Department of Engineering, University of Cambridge, CambridgeCB2 1PZ, United Kingdom
- Center for Cognitive Computation, Department of Cognitive Science, Central European University, BudapestH-1051, Hungary
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11
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Luo TZ, Kim TD, Gupta D, Bondy AG, Kopec CD, Elliot VA, DePasquale B, Brody CD. Transitions in dynamical regime and neural mode underlie perceptual decision-making. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2023:2023.10.15.562427. [PMID: 37904994 PMCID: PMC10614809 DOI: 10.1101/2023.10.15.562427] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/02/2023]
Abstract
Perceptual decision-making is the process by which an animal uses sensory stimuli to choose an action or mental proposition. This process is thought to be mediated by neurons organized as attractor networks 1,2 . However, whether attractor dynamics underlie decision behavior and the complex neuronal responses remains unclear. Here we use an unsupervised, deep learning-based method to discover decision-related dynamics from the simultaneous activity of neurons in frontal cortex and striatum of rats while they accumulate pulsatile auditory evidence. We show that contrary to prevailing hypotheses, attractors play a role only after a transition from a regime in the dynamics that is strongly driven by inputs to one dominated by the intrinsic dynamics. The initial regime mediates evidence accumulation, and the subsequent intrinsic-dominant regime subserves decision commitment. This regime transition is coupled to a rapid reorganization in the representation of the decision process in the neural population (a change in the "neural mode" along which the process develops). A simplified model approximating the coupled transition in the dynamics and neural mode allows inferring, from each trial's neural activity, the internal decision commitment time in that trial, and captures diverse and complex single-neuron temporal profiles, such as ramping and stepping 3-5 . It also captures trial-averaged curved trajectories 6-8 , and reveals distinctions between brain regions. Our results show that the formation of a perceptual choice involves a rapid, coordinated transition in both the dynamical regime and the neural mode of the decision process, and suggest pairing deep learning and parsimonious models as a promising approach for understanding complex data.
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12
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Marmor O, Pollak Y, Doron C, Helmchen F, Gilad A. History information emerges in the cortex during learning. eLife 2023; 12:e83702. [PMID: 37921842 PMCID: PMC10624423 DOI: 10.7554/elife.83702] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/25/2022] [Accepted: 10/23/2023] [Indexed: 11/04/2023] Open
Abstract
We learn from our experience but the underlying neuronal mechanisms incorporating past information to facilitate learning is relatively unknown. Specifically, which cortical areas encode history-related information and how is this information modulated across learning? To study the relationship between history and learning, we continuously imaged cortex-wide calcium dynamics as mice learn to use their whiskers to discriminate between two different textures. We mainly focused on comparing the same trial type with different trial history, that is, a different preceding trial. We found trial history information in barrel cortex (BC) during stimulus presentation. Importantly, trial history in BC emerged only as the mouse learned the task. Next, we also found learning-dependent trial history information in rostrolateral (RL) association cortex that emerges before stimulus presentation, preceding activity in BC. Trial history was also encoded in other cortical areas and was not related to differences in body movements. Interestingly, a binary classifier could discriminate trial history at the single trial level just as well as current information both in BC and RL. These findings suggest that past experience emerges in the cortex around the time of learning, starting from higher-order association area RL and propagating down (i.e., top-down projection) to lower-order BC where it can be integrated with incoming sensory information. This integration between the past and present may facilitate learning.
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Affiliation(s)
- Odeya Marmor
- Department of Medical Neurobiology, Faculty of Medicine, The Institute for Medical Research Israel-Canada (IMRIC), The Hebrew University of JerusalemJerusalemIsrael
| | - Yael Pollak
- Department of Medical Neurobiology, Faculty of Medicine, The Institute for Medical Research Israel-Canada (IMRIC), The Hebrew University of JerusalemJerusalemIsrael
| | - Chen Doron
- Department of Medical Neurobiology, Faculty of Medicine, The Institute for Medical Research Israel-Canada (IMRIC), The Hebrew University of JerusalemJerusalemIsrael
| | - Fritjof Helmchen
- Brain Research Institute, University of ZurichZurichSwitzerland
- Neuroscience Center ZurichZurichSwitzerland
| | - Ariel Gilad
- Department of Medical Neurobiology, Faculty of Medicine, The Institute for Medical Research Israel-Canada (IMRIC), The Hebrew University of JerusalemJerusalemIsrael
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13
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Imani E, Radkani S, Hashemi A, Harati A, Pourreza H, Moazami Goudarzi M. Distributed Coding of Evidence Accumulation across the Mouse Brain Using Microcircuits with a Diversity of Timescales. eNeuro 2023; 10:ENEURO.0282-23.2023. [PMID: 37863657 PMCID: PMC10626503 DOI: 10.1523/eneuro.0282-23.2023] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/06/2023] [Revised: 09/11/2023] [Accepted: 09/25/2023] [Indexed: 10/22/2023] Open
Abstract
The gradual accumulation of noisy evidence for or against options is the main step in the perceptual decision-making process. Using brain-wide electrophysiological recording in mice (Steinmetz et al., 2019), we examined neural correlates of evidence accumulation across brain areas. We demonstrated that the neurons with drift-diffusion model (DDM)-like firing rate activity (i.e., evidence-sensitive ramping firing rate) were distributed across the brain. Exploring the underlying neural mechanism of evidence accumulation for the DDM-like neurons revealed different accumulation mechanisms (i.e., single and race) both within and across the brain areas. Our findings support the hypothesis that evidence accumulation is happening through multiple integration mechanisms in the brain. We further explored the timescale of the integration process in the single and race accumulator models. The results demonstrated that the accumulator microcircuits within each brain area had distinct properties in terms of their integration timescale, which were organized hierarchically across the brain. These findings support the existence of evidence accumulation over multiple timescales. Besides the variability of integration timescale across the brain, a heterogeneity of timescales was observed within each brain area as well. We demonstrated that this variability reflected the diversity of microcircuit parameters, such that accumulators with longer integration timescales had higher recurrent excitation strength.
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Affiliation(s)
- Elaheh Imani
- Department of Computer Engineering, Ferdowsi University of Mashhad, Mashhad, 9177948974, Iran
| | - Setayesh Radkani
- Brain and Cognitive Sciences, Massachusetts Institute of Technology, Cambridge, MA 02139
| | | | - Ahad Harati
- Department of Computer Engineering, Ferdowsi University of Mashhad, Mashhad, 9177948974, Iran
| | - Hamidreza Pourreza
- Department of Computer Engineering, Ferdowsi University of Mashhad, Mashhad, 9177948974, Iran
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14
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Kim SJ, Affan RO, Frostig H, Scott BB, Alexander AS. Advances in cellular resolution microscopy for brain imaging in rats. NEUROPHOTONICS 2023; 10:044304. [PMID: 38076724 PMCID: PMC10704261 DOI: 10.1117/1.nph.10.4.044304] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 05/05/2023] [Revised: 09/23/2023] [Accepted: 11/07/2023] [Indexed: 02/12/2024]
Abstract
Rats are used in neuroscience research because of their physiological similarities with humans and accessibility as model organisms, trainability, and behavioral repertoire. In particular, rats perform a wide range of sophisticated social, cognitive, motor, and learning behaviors within the contexts of both naturalistic and laboratory environments. Further progress in neuroscience can be facilitated by using advanced imaging methods to measure the complex neural and physiological processes during behavior in rats. However, compared with the mouse, the rat nervous system offers a set of challenges, such as larger brain size, decreased neuron density, and difficulty with head restraint. Here, we review recent advances in in vivo imaging techniques in rats with a special focus on open-source solutions for calcium imaging. Finally, we provide suggestions for both users and developers of in vivo imaging systems for rats.
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Affiliation(s)
- Su Jin Kim
- Johns Hopkins University, Department of Psychological and Brain Sciences, Baltimore, Maryland, United States
| | - Rifqi O. Affan
- Boston University, Center for Systems Neuroscience, Department of Psychological and Brain Sciences, Boston, Massachusetts, United States
- Boston University, Graduate Program in Neuroscience, Boston, Massachusetts, United States
| | - Hadas Frostig
- Boston University, Center for Systems Neuroscience, Department of Psychological and Brain Sciences, Boston, Massachusetts, United States
| | - Benjamin B. Scott
- Boston University, Center for Systems Neuroscience, Department of Psychological and Brain Sciences, Boston, Massachusetts, United States
- Boston University, Neurophotonics Center and Photonics Center, Boston, Massachusetts, United States
| | - Andrew S. Alexander
- University of California Santa Barbara, Department of Psychological and Brain Sciences, Santa Barbara, California, United States
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15
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Liu J, Liu D, Pu X, Zou K, Xie T, Li Y, Yao H. The Secondary Motor Cortex-striatum Circuit Contributes to Suppressing Inappropriate Responses in Perceptual Decision Behavior. Neurosci Bull 2023; 39:1544-1560. [PMID: 37253985 PMCID: PMC10533474 DOI: 10.1007/s12264-023-01073-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/16/2022] [Accepted: 03/08/2023] [Indexed: 06/01/2023] Open
Abstract
The secondary motor cortex (M2) encodes choice-related information and plays an important role in cue-guided actions. M2 neurons innervate the dorsal striatum (DS), which also contributes to decision-making behavior, yet how M2 modulates signals in the DS to influence perceptual decision-making is unclear. Using mice performing a visual Go/No-Go task, we showed that inactivating M2 projections to the DS impaired performance by increasing the false alarm (FA) rate to the reward-irrelevant No-Go stimulus. The choice signal of M2 neurons correlated with behavioral performance, and the inactivation of M2 neurons projecting to the DS reduced the choice signal in the DS. By measuring and manipulating the responses of direct or indirect pathway striatal neurons defined by M2 inputs, we found that the indirect pathway neurons exhibited a shorter response latency to the No-Go stimulus, and inactivating their early responses increased the FA rate. These results demonstrate that the M2-to-DS pathway is crucial for suppressing inappropriate responses in perceptual decision behavior.
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Affiliation(s)
- Jing Liu
- Institute of Neuroscience, State Key Laboratory of Neuroscience, CAS Center for Excellence in Brain Science and Intelligence Technology, Chinese Academy of Sciences, Shanghai, 200031, China
- University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Dechen Liu
- Institute of Neuroscience, State Key Laboratory of Neuroscience, CAS Center for Excellence in Brain Science and Intelligence Technology, Chinese Academy of Sciences, Shanghai, 200031, China
| | - Xiaotian Pu
- Institute of Neuroscience, State Key Laboratory of Neuroscience, CAS Center for Excellence in Brain Science and Intelligence Technology, Chinese Academy of Sciences, Shanghai, 200031, China
- University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Kexin Zou
- Institute of Neuroscience, State Key Laboratory of Neuroscience, CAS Center for Excellence in Brain Science and Intelligence Technology, Chinese Academy of Sciences, Shanghai, 200031, China
- University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Taorong Xie
- Institute of Neuroscience, State Key Laboratory of Neuroscience, CAS Center for Excellence in Brain Science and Intelligence Technology, Chinese Academy of Sciences, Shanghai, 200031, China
| | - Yaping Li
- Institute of Neuroscience, State Key Laboratory of Neuroscience, CAS Center for Excellence in Brain Science and Intelligence Technology, Chinese Academy of Sciences, Shanghai, 200031, China
| | - Haishan Yao
- Institute of Neuroscience, State Key Laboratory of Neuroscience, CAS Center for Excellence in Brain Science and Intelligence Technology, Chinese Academy of Sciences, Shanghai, 200031, China.
- Shanghai Center for Brain Science and Brain-Inspired Intelligence Technology, Shanghai, 201210, China.
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16
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Smucny J, Hanks TD, Lesh TA, Carter CS. Altered Associations Between Task Performance and Dorsolateral Prefrontal Cortex Activation During Cognitive Control in Schizophrenia. BIOLOGICAL PSYCHIATRY. COGNITIVE NEUROSCIENCE AND NEUROIMAGING 2023; 8:1050-1057. [PMID: 37295646 PMCID: PMC11189634 DOI: 10.1016/j.bpsc.2023.05.010] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/20/2023] [Revised: 05/11/2023] [Accepted: 05/31/2023] [Indexed: 06/12/2023]
Abstract
BACKGROUND Dysfunctional cognitive control processes are now well understood to be core features of schizophrenia (SZ). A body of work suggests that the dorsolateral prefrontal cortex (DLPFC) plays a critical role in explaining cognitive control disruptions in SZ. Here, we examined relationships between DLPFC activation and drift rate (DR), a model-based performance measure that combines reaction time and accuracy, in people with SZ and healthy control (HC) participants. METHODS One hundred fifty-one people with recent-onset SZ spectrum disorders and 118 HC participants performed the AX-Continuous Performance Task during functional magnetic resonance imaging scanning. Proactive cognitive control-associated activation was extracted from left and right DLPFC regions of interest. Individual behavior was fit using a drift diffusion model, allowing DR to vary between task conditions. RESULTS Behaviorally, people with SZ showed significantly lower DRs than HC participants, particularly during high proactive control trial types ("B" trials). Recapitulating previous findings, the SZ group also demonstrated reduced cognitive control-associated DLPFC activation compared with HC participants. Furthermore, significant group differences were also observed in the relationship between left and right DLPFC activation with DR, such that positive relationships between DR and activation were found in HC participants but not in people with SZ. CONCLUSIONS These results suggest that DLPFC activation is less associated with cognitive control-related behavioral performance enhancements in SZ. Potential mechanisms and implications are discussed.
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Affiliation(s)
- Jason Smucny
- Department of Psychiatry and Behavioral Sciences, University of California, Davis, Davis, California; Center for Neuroscience, University of California, Davis, Davis, California.
| | - Timothy D Hanks
- Center for Neuroscience, University of California, Davis, Davis, California; Department of Neurology, University of California, Davis, Davis, California
| | - Tyler A Lesh
- Department of Psychiatry and Behavioral Sciences, University of California, Davis, Davis, California; Center for Neuroscience, University of California, Davis, Davis, California
| | - Cameron S Carter
- Department of Psychiatry and Behavioral Sciences, University of California, Davis, Davis, California; Center for Neuroscience, University of California, Davis, Davis, California
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17
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Zacharopoulos G, Sella F, Emir U, Cohen Kadosh R. Dissecting the chain of information processing and its interplay with neurochemicals and fluid intelligence across development. eLife 2023; 12:e84086. [PMID: 37772958 PMCID: PMC10541179 DOI: 10.7554/elife.84086] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/10/2022] [Accepted: 08/23/2023] [Indexed: 09/30/2023] Open
Abstract
Previous research has highlighted the role of glutamate and gamma-aminobutyric acid (GABA) in perceptual, cognitive, and motor tasks. However, the exact involvement of these neurochemical mechanisms in the chain of information processing, and across human development, is unclear. In a cross-sectional longitudinal design, we used a computational approach to dissociate cognitive, decision, and visuomotor processing in 293 individuals spanning early childhood to adulthood. We found that glutamate and GABA within the intraparietal sulcus (IPS) explained unique variance in visuomotor processing, with higher glutamate predicting poorer visuomotor processing in younger participants but better visuomotor processing in mature participants, while GABA showed the opposite pattern. These findings, which were neurochemically, neuroanatomically and functionally specific, were replicated ~21 mo later and were generalized in two further different behavioral tasks. Using resting functional MRI, we revealed that the relationship between IPS neurochemicals and visuomotor processing is mediated by functional connectivity in the visuomotor network. We then extended our findings to high-level cognitive behavior by predicting fluid intelligence performance. We present evidence that fluid intelligence performance is explained by IPS GABA and glutamate and is mediated by visuomotor processing. However, this evidence was obtained using an uncorrected alpha and needs to be replicated in future studies. These results provide an integrative biological and psychological mechanistic explanation that links cognitive processes and neurotransmitters across human development and establishes their potential involvement in intelligent behavior.
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Affiliation(s)
- George Zacharopoulos
- Wellcome Centre for Integrative Neuroimaging, Department of Experimental Psychology, University of OxfordOxfordUnited Kingdom
- School of Psychology, Swansea UniversitySwanseaUnited Kingdom
| | - Francesco Sella
- Wellcome Centre for Integrative Neuroimaging, Department of Experimental Psychology, University of OxfordOxfordUnited Kingdom
- Centre for Mathematical Cognition, Loughborough UniversityLoughboroughUnited Kingdom
| | - Uzay Emir
- Wellcome Centre for Integrative Neuroimaging, Department of Experimental Psychology, University of OxfordOxfordUnited Kingdom
- School of Health Sciences, College of Health and Human Sciences, Purdue UniversityWest LafayetteUnited States
| | - Roi Cohen Kadosh
- Wellcome Centre for Integrative Neuroimaging, Department of Experimental Psychology, University of OxfordOxfordUnited Kingdom
- School of Psychology, University of SurreyGuildfordUnited Kingdom
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18
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Zabeh E, Foley NC, Jacobs J, Gottlieb JP. Beta traveling waves in monkey frontal and parietal areas encode recent reward history. Nat Commun 2023; 14:5428. [PMID: 37669966 PMCID: PMC10480436 DOI: 10.1038/s41467-023-41125-9] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/16/2022] [Accepted: 08/22/2023] [Indexed: 09/07/2023] Open
Abstract
Brain function depends on neural communication, but the mechanisms of this communication are not well understood. Recent studies suggest that one form of neural communication is through traveling waves (TWs)-patterns of neural oscillations that propagate within and between brain areas. We show that TWs are robust in microarray recordings in frontal and parietal cortex and encode recent reward history. Two adult male monkeys made saccades to obtain probabilistic rewards and were sensitive to the (statistically irrelevant) reward on the previous trial. TWs in frontal and parietal areas were stronger in trials that followed a prior reward versus a lack of reward and, in the frontal lobe, correlated with the monkeys' behavioral sensitivity to the prior reward. The findings suggest that neural communication mediated by TWs within the frontal and parietal lobes contribute to maintaining information about recent reward history and mediating the impact of this history on the monkeys' expectations.
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Affiliation(s)
- Erfan Zabeh
- Department of Biomedical Engineering, Columbia University, New York, NY, USA
- Mortimer B. Zuckerman Mind Brain Behavior Institute, Columbia University, New York, NY, USA
| | - Nicholas C Foley
- Mortimer B. Zuckerman Mind Brain Behavior Institute, Columbia University, New York, NY, USA
| | - Joshua Jacobs
- Department of Biomedical Engineering, Columbia University, New York, NY, USA.
- Department of Neurological Surgery, Columbia University, New York, NY, USA.
| | - Jacqueline P Gottlieb
- Mortimer B. Zuckerman Mind Brain Behavior Institute, Columbia University, New York, NY, USA.
- Department of Neuroscience, Columbia University, New York, NY, USA.
- Kavli Institute for Brain Science, Columbia University, New York, NY, USA.
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19
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Green J, Bruno CA, Traunmüller L, Ding J, Hrvatin S, Wilson DE, Khodadad T, Samuels J, Greenberg ME, Harvey CD. A cell-type-specific error-correction signal in the posterior parietal cortex. Nature 2023; 620:366-373. [PMID: 37468637 PMCID: PMC10412446 DOI: 10.1038/s41586-023-06357-1] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/16/2022] [Accepted: 06/21/2023] [Indexed: 07/21/2023]
Abstract
Neurons in the posterior parietal cortex contribute to the execution of goal-directed navigation1 and other decision-making tasks2-4. Although molecular studies have catalogued more than 50 cortical cell types5, it remains unclear what distinct functions they have in this area. Here we identified a molecularly defined subset of somatostatin (Sst) inhibitory neurons that, in the mouse posterior parietal cortex, carry a cell-type-specific error-correction signal for navigation. We obtained repeatable experimental access to these cells using an adeno-associated virus in which gene expression is driven by an enhancer that functions specifically in a subset of Sst cells6. We found that during goal-directed navigation in a virtual environment, this subset of Sst neurons activates in a synchronous pattern that is distinct from the activity of surrounding neurons, including other Sst neurons. Using in vivo two-photon photostimulation and ex vivo paired patch-clamp recordings, we show that nearby cells of this Sst subtype excite each other through gap junctions, revealing a self-excitation circuit motif that contributes to the synchronous activity of this cell type. These cells selectively activate as mice execute course corrections for deviations in their virtual heading during navigation towards a reward location, for both self-induced and experimentally induced deviations. We propose that this subtype of Sst neurons provides a self-reinforcing and cell-type-specific error-correction signal in the posterior parietal cortex that may help with the execution and learning of accurate goal-directed navigation trajectories.
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Affiliation(s)
- Jonathan Green
- Department of Neurobiology, Harvard Medical School, Boston, MA, USA.
| | - Carissa A Bruno
- Department of Neurobiology, Harvard Medical School, Boston, MA, USA
| | - Lisa Traunmüller
- Department of Neurobiology, Harvard Medical School, Boston, MA, USA
| | - Jennifer Ding
- Department of Neurobiology, Harvard Medical School, Boston, MA, USA
| | - Siniša Hrvatin
- Department of Neurobiology, Harvard Medical School, Boston, MA, USA
- Whitehead Institute, MIT, Cambridge, MA, USA
| | - Daniel E Wilson
- Department of Neurobiology, Harvard Medical School, Boston, MA, USA
| | - Thomas Khodadad
- Department of Neurobiology, Harvard Medical School, Boston, MA, USA
| | - Jonathan Samuels
- Department of Neurobiology, Harvard Medical School, Boston, MA, USA
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20
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Balsdon T, Verdonck S, Loossens T, Philiastides MG. Secondary motor integration as a final arbiter in sensorimotor decision-making. PLoS Biol 2023; 21:e3002200. [PMID: 37459392 PMCID: PMC10393169 DOI: 10.1371/journal.pbio.3002200] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/30/2022] [Revised: 08/01/2023] [Accepted: 06/15/2023] [Indexed: 08/02/2023] Open
Abstract
Sensorimotor decision-making is believed to involve a process of accumulating sensory evidence over time. While current theories posit a single accumulation process prior to planning an overt motor response, here, we propose an active role of motor processes in decision formation via a secondary leaky motor accumulation stage. The motor leak adapts the "memory" with which this secondary accumulator reintegrates the primary accumulated sensory evidence, thus adjusting the temporal smoothing in the motor evidence and, correspondingly, the lag between the primary and motor accumulators. We compare this framework against different single accumulator variants using formal model comparison, fitting choice, and response times in a task where human observers made categorical decisions about a noisy sequence of images, under different speed-accuracy trade-off instructions. We show that, rather than boundary adjustments (controlling the amount of evidence accumulated for decision commitment), adjustment of the leak in the secondary motor accumulator provides the better description of behavior across conditions. Importantly, we derive neural correlates of these 2 integration processes from electroencephalography data recorded during the same task and show that these neural correlates adhere to the neural response profiles predicted by the model. This framework thus provides a neurobiologically plausible description of sensorimotor decision-making that captures emerging evidence of the active role of motor processes in choice behavior.
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Affiliation(s)
- Tarryn Balsdon
- School of Psychology and Neuroscience, University of Glasgow, Glasgow, United Kingdom
| | - Stijn Verdonck
- Faculty of Psychology and Educational Sciences, KU Leuven, Leuven, Belgium
| | - Tim Loossens
- Faculty of Psychology and Educational Sciences, KU Leuven, Leuven, Belgium
| | - Marios G Philiastides
- School of Psychology and Neuroscience, University of Glasgow, Glasgow, United Kingdom
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21
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Cazettes F, Mazzucato L, Murakami M, Morais JP, Augusto E, Renart A, Mainen ZF. A reservoir of foraging decision variables in the mouse brain. Nat Neurosci 2023; 26:840-849. [PMID: 37055628 PMCID: PMC10280691 DOI: 10.1038/s41593-023-01305-8] [Citation(s) in RCA: 8] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/24/2022] [Accepted: 03/15/2023] [Indexed: 04/15/2023]
Abstract
In any given situation, the environment can be parsed in different ways to yield decision variables (DVs) defining strategies useful for different tasks. It is generally presumed that the brain only computes a single DV defining the current behavioral strategy. Here to test this assumption, we recorded neural ensembles in the frontal cortex of mice performing a foraging task admitting multiple DVs. Methods developed to uncover the currently employed DV revealed the use of multiple strategies and occasional switches in strategy within sessions. Optogenetic manipulations showed that the secondary motor cortex (M2) is needed for mice to use the different DVs in the task. Surprisingly, we found that regardless of which DV best explained the current behavior, M2 activity concurrently encoded a full basis set of computations defining a reservoir of DVs appropriate for alternative tasks. This form of neural multiplexing may confer considerable advantages for learning and adaptive behavior.
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Affiliation(s)
| | - Luca Mazzucato
- Departments of Biology, Mathematics & Physics, Institute of Neuroscience, University of Oregon, Eugene, OR, USA
| | - Masayoshi Murakami
- Champalimaud Foundation, Lisbon, Portugal
- Department of Neurophysiology, University of Yamanashi, Yamanashi, Japan
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22
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Kira S, Safaai H, Morcos AS, Panzeri S, Harvey CD. A distributed and efficient population code of mixed selectivity neurons for flexible navigation decisions. Nat Commun 2023; 14:2121. [PMID: 37055431 PMCID: PMC10102117 DOI: 10.1038/s41467-023-37804-2] [Citation(s) in RCA: 17] [Impact Index Per Article: 17.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/07/2021] [Accepted: 03/30/2023] [Indexed: 04/15/2023] Open
Abstract
Decision-making requires flexibility to rapidly switch one's actions in response to sensory stimuli depending on information stored in memory. We identified cortical areas and neural activity patterns underlying this flexibility during virtual navigation, where mice switched navigation toward or away from a visual cue depending on its match to a remembered cue. Optogenetics screening identified V1, posterior parietal cortex (PPC), and retrosplenial cortex (RSC) as necessary for accurate decisions. Calcium imaging revealed neurons that can mediate rapid navigation switches by encoding a mixture of a current and remembered visual cue. These mixed selectivity neurons emerged through task learning and predicted the mouse's choices by forming efficient population codes before correct, but not incorrect, choices. They were distributed across posterior cortex, even V1, and were densest in RSC and sparsest in PPC. We propose flexibility in navigation decisions arises from neurons that mix visual and memory information within a visual-parietal-retrosplenial network.
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Affiliation(s)
- Shinichiro Kira
- Department of Neurobiology, Harvard Medical School, Boston, MA, USA
| | - Houman Safaai
- Department of Neurobiology, Harvard Medical School, Boston, MA, USA
- Neural Computation Laboratory, Istituto Italiano di Tecnologia, Rovereto, Italy
| | - Ari S Morcos
- Department of Neurobiology, Harvard Medical School, Boston, MA, USA
| | - Stefano Panzeri
- Neural Computation Laboratory, Istituto Italiano di Tecnologia, Rovereto, Italy
- Department of Excellence for Neural Information Processing, Center for Molecular Neurobiology (ZMNH), University Medical Center Hamburg-Eppendorf (UKE), Hamburg, Germany
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23
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Xie T, Huang C, Zhang Y, Liu J, Yao H. Influence of Recent Trial History on Interval Timing. Neurosci Bull 2023; 39:559-575. [PMID: 36209314 PMCID: PMC10073370 DOI: 10.1007/s12264-022-00954-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/01/2022] [Accepted: 07/10/2022] [Indexed: 11/30/2022] Open
Abstract
Interval timing is involved in a variety of cognitive behaviors such as associative learning and decision-making. While it has been shown that time estimation is adaptive to the temporal context, it remains unclear how interval timing behavior is influenced by recent trial history. Here we found that, in mice trained to perform a licking-based interval timing task, a decrease of inter-reinforcement interval in the previous trial rapidly shifted the time of anticipatory licking earlier. Optogenetic inactivation of the anterior lateral motor cortex (ALM), but not the medial prefrontal cortex, for a short time before reward delivery caused a decrease in the peak time of anticipatory licking in the next trial. Electrophysiological recordings from the ALM showed that the response profiles preceded by short and long inter-reinforcement intervals exhibited task-engagement-dependent temporal scaling. Thus, interval timing is adaptive to recent experience of the temporal interval, and ALM activity during time estimation reflects recent experience of interval.
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Affiliation(s)
- Taorong Xie
- Institute of Neuroscience, State Key Laboratory of Neuroscience, CAS Center for Excellence in Brain Science and Intelligence Technology, Chinese Academy of Sciences, Shanghai, 200031, China
| | - Can Huang
- Institute of Neuroscience, State Key Laboratory of Neuroscience, CAS Center for Excellence in Brain Science and Intelligence Technology, Chinese Academy of Sciences, Shanghai, 200031, China
- University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Yijie Zhang
- Institute of Neuroscience, State Key Laboratory of Neuroscience, CAS Center for Excellence in Brain Science and Intelligence Technology, Chinese Academy of Sciences, Shanghai, 200031, China
- University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Jing Liu
- Institute of Neuroscience, State Key Laboratory of Neuroscience, CAS Center for Excellence in Brain Science and Intelligence Technology, Chinese Academy of Sciences, Shanghai, 200031, China
- University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Haishan Yao
- Institute of Neuroscience, State Key Laboratory of Neuroscience, CAS Center for Excellence in Brain Science and Intelligence Technology, Chinese Academy of Sciences, Shanghai, 200031, China.
- Shanghai Center for Brain Science and Brain-Inspired Intelligence Technology, Shanghai, 201210, China.
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24
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Lakshminarasimhan KJ, Avila E, Pitkow X, Angelaki DE. Dynamical latent state computation in the male macaque posterior parietal cortex. Nat Commun 2023; 14:1832. [PMID: 37005470 PMCID: PMC10067966 DOI: 10.1038/s41467-023-37400-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/13/2022] [Accepted: 03/15/2023] [Indexed: 04/04/2023] Open
Abstract
Success in many real-world tasks depends on our ability to dynamically track hidden states of the world. We hypothesized that neural populations estimate these states by processing sensory history through recurrent interactions which reflect the internal model of the world. To test this, we recorded brain activity in posterior parietal cortex (PPC) of monkeys navigating by optic flow to a hidden target location within a virtual environment, without explicit position cues. In addition to sequential neural dynamics and strong interneuronal interactions, we found that the hidden state - monkey's displacement from the goal - was encoded in single neurons, and could be dynamically decoded from population activity. The decoded estimates predicted navigation performance on individual trials. Task manipulations that perturbed the world model induced substantial changes in neural interactions, and modified the neural representation of the hidden state, while representations of sensory and motor variables remained stable. The findings were recapitulated by a task-optimized recurrent neural network model, suggesting that task demands shape the neural interactions in PPC, leading them to embody a world model that consolidates information and tracks task-relevant hidden states.
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Affiliation(s)
| | - Eric Avila
- Center for Neural Science, New York University, New York City, NY, USA
| | - Xaq Pitkow
- Department of Neuroscience, Baylor College of Medicine, Houston, TX, USA
- Center for Neuroscience and Artificial Intelligence, Baylor College of Medicine, Houston, TX, USA
- Electrical & Computer Engineering, Rice University, Houston, TX, USA
| | - Dora E Angelaki
- Center for Neural Science, New York University, New York City, NY, USA
- Department of Mechanical and Aerospace Engineering, New York University, New York City, NY, USA
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25
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Howard MW, Esfahani ZG, Le B, Sederberg PB. Foundations of a temporal RL. ARXIV 2023:arXiv:2302.10163v1. [PMID: 36866224 PMCID: PMC9980275] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Subscribe] [Scholar Register] [Indexed: 03/04/2023]
Abstract
Recent advances in neuroscience and psychology show that the brain has access to timelines of both the past and the future. Spiking across populations of neurons in many regions of the mammalian brain maintains a robust temporal memory, a neural timeline of the recent past. Behavioral results demonstrate that people can estimate an extended temporal model of the future, suggesting that the neural timeline of the past could extend through the present into the future. This paper presents a mathematical framework for learning and expressing relationships between events in continuous time. We assume that the brain has access to a temporal memory in the form of the real Laplace transform of the recent past. Hebbian associations with a diversity of synaptic time scales are formed between the past and the present that record the temporal relationships between events. Knowing the temporal relationships between the past and the present allows one to predict relationships between the present and the future, thus constructing an extended temporal prediction for the future. Both memory for the past and the predicted future are represented as the real Laplace transform, expressed as the firing rate over populations of neurons indexed by different rate constants s. The diversity of synaptic timescales allows for a temporal record over the much larger time scale of trial history. In this framework, temporal credit assignment can be assessed via a Laplace temporal difference. The Laplace temporal difference compares the future that actually follows a stimulus to the future predicted just before the stimulus was observed. This computational framework makes a number of specific neurophysiological predictions and, taken together, could provide the basis for a future iteration of RL that incorporates temporal memory as a fundamental building block.
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26
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Azizi Z, Ebrahimpour R. Explaining Integration of Evidence Separated by Temporal Gaps with Frontoparietal Circuit Models. Neuroscience 2023; 509:74-95. [PMID: 36457229 DOI: 10.1016/j.neuroscience.2022.10.019] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/15/2022] [Revised: 10/17/2022] [Accepted: 10/20/2022] [Indexed: 11/07/2022]
Abstract
Perceptual decisions rely on accumulating sensory evidence over time. However, the accumulation process is complicated in real life when evidence resulted from separated cues over time. Previous studies demonstrate that participants are able to integrate information from two separated cues to improve their performance invariant to an interval between the cues. However, there is no neural model that can account for accuracy and confidence in decisions when there is a time interval in evidence. We used behavioral and EEG datasets from a visual choice task -Random dot motion- with separated evidence to investigate three candid distributed neural networks. We showed that decisions based on evidence accumulation by separated cues over time are best explained by the interplay of recurrent cortical dynamics of centro-parietal and frontal brain areas while an uncertainty-monitoring module included in the model.
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Affiliation(s)
- Zahra Azizi
- Department of Cognitive Modeling, Institute for Cognitive Science Studies, Tehran, Iran.
| | - Reza Ebrahimpour
- Institute for Convergence Science and Technology (ICST), Sharif University of Technology, Tehran, P.O.Box: 11155-8639, Iran; Faculty of Computer Engineering, Shahid Rajaee Teacher Training University, Postal Box: 16785-163, Tehran, Iran; School of Cognitive Sciences (SCS), Institute for Research in Fundamental Sciences (IPM), Niavaran, Postal Box: 19395-5746, Tehran, Iran.
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27
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Do Q, Li Y, Kane GA, McGuire JT, Scott BB. Assessing evidence accumulation and rule learning in humans with an online game. J Neurophysiol 2023; 129:131-143. [PMID: 36475830 DOI: 10.1152/jn.00124.2022] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022] Open
Abstract
Evidence accumulation, an essential component of perception and decision making, is frequently studied with psychophysical tasks involving noisy or ambiguous stimuli. In these tasks, participants typically receive verbal or written instructions that describe the strategy that should be used to guide decisions. Although convenient and effective, explicit instructions can influence learning and decision making strategies and can limit comparisons with animal models, in which behaviors are reinforced through feedback. Here, we developed an online video game and nonverbal training pipeline, inspired by pulse-based tasks for rodents, as an alternative to traditional psychophysical tasks used to study evidence accumulation. Using this game, we collected behavioral data from hundreds of participants trained with an explicit description of the decision rule or with experiential feedback. Participants trained with feedback alone learned the game rules rapidly and used strategies and displayed biases similar to those who received explicit instructions. Finally, by leveraging data across hundreds of participants, we show that perceptual judgments were well described by an accumulation process in which noise scaled nonlinearly with evidence, consistent with previous animal studies but inconsistent with diffusion models widely used to describe perceptual decisions in humans. These results challenge the conventional description of the accumulation process and suggest that online games provide a valuable platform to examine perceptual decision making and learning in humans. In addition, the feedback-based training pipeline developed for this game may be useful for evaluating perceptual decision making in human populations with difficulty following verbal instructions.NEW & NOTEWORTHY Perceptual uncertainty sets critical constraints on our ability to accumulate evidence and make decisions; however, its sources remain unclear. We developed a video game, and feedback-based training pipeline, to study uncertainty during decision making. Leveraging choices from hundreds of subjects, we demonstrate that human choices are inconsistent with popular diffusion models of human decision making and instead are best fit by models in which perceptual uncertainty scales nonlinearly with the strength of sensory evidence.
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Affiliation(s)
- Quan Do
- Department of Psychological and Brain Sciences and Center for Systems Neuroscience, Boston University, Boston, Massachusetts
| | - Yutong Li
- Department of Psychological and Brain Sciences and Center for Systems Neuroscience, Boston University, Boston, Massachusetts
| | - Gary A Kane
- Department of Psychological and Brain Sciences and Center for Systems Neuroscience, Boston University, Boston, Massachusetts
| | - Joseph T McGuire
- Department of Psychological and Brain Sciences and Center for Systems Neuroscience, Boston University, Boston, Massachusetts
| | - Benjamin B Scott
- Department of Psychological and Brain Sciences and Center for Systems Neuroscience, Boston University, Boston, Massachusetts
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28
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Persistent activity in human parietal cortex mediates perceptual choice repetition bias. Nat Commun 2022; 13:6015. [PMID: 36224207 PMCID: PMC9556658 DOI: 10.1038/s41467-022-33237-5] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/11/2021] [Accepted: 09/08/2022] [Indexed: 11/09/2022] Open
Abstract
Humans and other animals tend to repeat or alternate their previous choices, even when judging sensory stimuli presented in a random sequence. It is unclear if and how sensory, associative, and motor cortical circuits produce these idiosyncratic behavioral biases. Here, we combined behavioral modeling of a visual perceptual decision with magnetoencephalographic (MEG) analyses of neural dynamics, across multiple regions of the human cerebral cortex. We identified distinct history-dependent neural signals in motor and posterior parietal cortex. Gamma-band activity in parietal cortex tracked previous choices in a sustained fashion, and biased evidence accumulation toward choice repetition; sustained beta-band activity in motor cortex inversely reflected the previous motor action, and biased the accumulation starting point toward alternation. The parietal, not motor, signal mediated the impact of previous on current choice and reflected individual differences in choice repetition. In sum, parietal cortical signals seem to play a key role in shaping choice sequences.
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29
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Sylwestrak EL, Jo Y, Vesuna S, Wang X, Holcomb B, Tien RH, Kim DK, Fenno L, Ramakrishnan C, Allen WE, Chen R, Shenoy KV, Sussillo D, Deisseroth K. Cell-type-specific population dynamics of diverse reward computations. Cell 2022; 185:3568-3587.e27. [PMID: 36113428 PMCID: PMC10387374 DOI: 10.1016/j.cell.2022.08.019] [Citation(s) in RCA: 18] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/16/2021] [Revised: 06/16/2022] [Accepted: 08/17/2022] [Indexed: 01/26/2023]
Abstract
Computational analysis of cellular activity has developed largely independently of modern transcriptomic cell typology, but integrating these approaches may be essential for full insight into cellular-level mechanisms underlying brain function and dysfunction. Applying this approach to the habenula (a structure with diverse, intermingled molecular, anatomical, and computational features), we identified encoding of reward-predictive cues and reward outcomes in distinct genetically defined neural populations, including TH+ cells and Tac1+ cells. Data from genetically targeted recordings were used to train an optimized nonlinear dynamical systems model and revealed activity dynamics consistent with a line attractor. High-density, cell-type-specific electrophysiological recordings and optogenetic perturbation provided supporting evidence for this model. Reverse-engineering predicted how Tac1+ cells might integrate reward history, which was complemented by in vivo experimentation. This integrated approach describes a process by which data-driven computational models of population activity can generate and frame actionable hypotheses for cell-type-specific investigation in biological systems.
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Affiliation(s)
- Emily L Sylwestrak
- Department of Biology, University of Oregon, Eugene, OR 97403, USA; Department of Bioengineering, Stanford University, Stanford, CA 94305, USA; Institute of Neuroscience, University of Oregon, Eugene, OR 97403, USA.
| | - YoungJu Jo
- Department of Bioengineering, Stanford University, Stanford, CA 94305, USA; Department of Applied Physics, Stanford University, Stanford, CA 94305, USA
| | - Sam Vesuna
- Department of Bioengineering, Stanford University, Stanford, CA 94305, USA; Department of Psychiatry and Behavioral Sciences, Stanford University, Stanford, CA 94305, USA
| | - Xiao Wang
- Department of Bioengineering, Stanford University, Stanford, CA 94305, USA
| | - Blake Holcomb
- Institute of Neuroscience, University of Oregon, Eugene, OR 97403, USA
| | - Rebecca H Tien
- Department of Bioengineering, Stanford University, Stanford, CA 94305, USA
| | - Doo Kyung Kim
- Department of Bioengineering, Stanford University, Stanford, CA 94305, USA
| | - Lief Fenno
- Department of Bioengineering, Stanford University, Stanford, CA 94305, USA; Department of Psychiatry and Behavioral Sciences, Stanford University, Stanford, CA 94305, USA
| | - Charu Ramakrishnan
- Department of Bioengineering, Stanford University, Stanford, CA 94305, USA
| | - William E Allen
- Department of Bioengineering, Stanford University, Stanford, CA 94305, USA; Neurosciences Interdepartmental Program, Stanford University, Stanford, CA 94303, USA
| | - Ritchie Chen
- Department of Bioengineering, Stanford University, Stanford, CA 94305, USA
| | - Krishna V Shenoy
- Department of Neurobiology, Stanford University, Stanford, CA 94303, USA; Department of Electrical Engineering, Stanford University, Stanford, CA, USA; Wu Tsai Neurosciences Institute, Stanford University, Stanford, CA, USA; Howard Hughes Medical Institute, Stanford University, Stanford, CA 94305, USA
| | - David Sussillo
- Department of Electrical Engineering, Stanford University, Stanford, CA, USA; Wu Tsai Neurosciences Institute, Stanford University, Stanford, CA, USA
| | - Karl Deisseroth
- Department of Bioengineering, Stanford University, Stanford, CA 94305, USA; Department of Psychiatry and Behavioral Sciences, Stanford University, Stanford, CA 94305, USA; Wu Tsai Neurosciences Institute, Stanford University, Stanford, CA, USA; Howard Hughes Medical Institute, Stanford University, Stanford, CA 94305, USA.
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30
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Human inference reflects a normative balance of complexity and accuracy. Nat Hum Behav 2022; 6:1153-1168. [PMID: 35637296 PMCID: PMC9446026 DOI: 10.1038/s41562-022-01357-z] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/05/2020] [Accepted: 04/20/2022] [Indexed: 02/03/2023]
Abstract
We must often infer latent properties of the world from noisy and changing observations. Complex, probabilistic approaches to this challenge such as Bayesian inference are accurate but cognitively demanding, relying on extensive working memory and adaptive processing. Simple heuristics are easy to implement but may be less accurate. What is the appropriate balance between complexity and accuracy? Here we model a hierarchy of strategies of variable complexity and find a power law of diminishing returns: increasing complexity gives progressively smaller gains in accuracy. The rate of diminishing returns depends systematically on the statistical uncertainty in the world, such that complex strategies do not provide substantial benefits over simple ones when uncertainty is either too high or too low. In between, there is a complexity dividend. In two psychophysical experiments, we confirm specific model predictions about how working memory and adaptivity should be modulated by uncertainty.
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31
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Pinto L, Tank DW, Brody CD. Multiple timescales of sensory-evidence accumulation across the dorsal cortex. eLife 2022; 11:e70263. [PMID: 35708483 PMCID: PMC9203055 DOI: 10.7554/elife.70263] [Citation(s) in RCA: 14] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/11/2021] [Accepted: 05/27/2022] [Indexed: 11/13/2022] Open
Abstract
Cortical areas seem to form a hierarchy of intrinsic timescales, but the relevance of this organization for cognitive behavior remains unknown. In particular, decisions requiring the gradual accrual of sensory evidence over time recruit widespread areas across this hierarchy. Here, we tested the hypothesis that this recruitment is related to the intrinsic integration timescales of these widespread areas. We trained mice to accumulate evidence over seconds while navigating in virtual reality and optogenetically silenced the activity of many cortical areas during different brief trial epochs. We found that the inactivation of all tested areas affected the evidence-accumulation computation. Specifically, we observed distinct changes in the weighting of sensory evidence occurring during and before silencing, such that frontal inactivations led to stronger deficits on long timescales than posterior cortical ones. Inactivation of a subset of frontal areas also led to moderate effects on behavioral processes beyond evidence accumulation. Moreover, large-scale cortical Ca2+ activity during task performance displayed different temporal integration windows. Our findings suggest that the intrinsic timescale hierarchy of distributed cortical areas is an important component of evidence-accumulation mechanisms.
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Affiliation(s)
- Lucas Pinto
- Department of Neuroscience, Northwestern UniversityChicagoUnited States
- Princeton Neuroscience Institute, Princeton UniversityPrincetonUnited States
| | - David W Tank
- Princeton Neuroscience Institute, Princeton UniversityPrincetonUnited States
| | - Carlos D Brody
- Princeton Neuroscience Institute, Princeton UniversityPrincetonUnited States
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32
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Boyd-Meredith JT, Piet AT, Dennis EJ, El Hady A, Brody CD. Stable choice coding in rat frontal orienting fields across model-predicted changes of mind. Nat Commun 2022; 13:3235. [PMID: 35688813 PMCID: PMC9187710 DOI: 10.1038/s41467-022-30736-3] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/13/2021] [Accepted: 05/13/2022] [Indexed: 11/09/2022] Open
Abstract
During decision making in a changing environment, evidence that may guide the decision accumulates until the point of action. In the rat, provisional choice is thought to be represented in frontal orienting fields (FOF), but this has only been tested in static environments where provisional and final decisions are not easily dissociated. Here, we characterize the representation of accumulated evidence in the FOF of rats performing a recently developed dynamic evidence accumulation task, which induces changes in the provisional decision, referred to as “changes of mind”. We find that FOF encodes evidence throughout decision formation with a temporal gain modulation that rises until the period when the animal may need to act. Furthermore, reversals in FOF firing rates can be accounted for by changes of mind predicted using a model of the decision process fit only to behavioral data. Our results suggest that the FOF represents provisional decisions even in dynamic, uncertain environments, allowing for rapid motor execution when it is time to act. A leaky accumulation model can predict rats’ changes of mind during decision making in a dynamic environment explaining reversals in frontal cortical activity and demonstrating a stable choice code despite environmental uncertainty.
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Affiliation(s)
| | - Alex T Piet
- Princeton Neuroscience Institute, Princeton University, Princeton, NJ, USA.,Allen Institute, Seattle, WA, USA
| | - Emily Jane Dennis
- Princeton Neuroscience Institute, Princeton University, Princeton, NJ, USA
| | - Ahmed El Hady
- Princeton Neuroscience Institute, Princeton University, Princeton, NJ, USA.
| | - Carlos D Brody
- Princeton Neuroscience Institute, Princeton University, Princeton, NJ, USA. .,Howard Hughes Medical Institute, Princeton University, Princeton, NJ, USA.
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33
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Applegate MC, Aronov D. Flexible use of memory by food-caching birds. eLife 2022; 11:70600. [PMID: 35467526 PMCID: PMC9038193 DOI: 10.7554/elife.70600] [Citation(s) in RCA: 10] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/22/2021] [Accepted: 12/02/2021] [Indexed: 11/30/2022] Open
Abstract
Animals use memory-guided and memory-independent strategies to make navigational decisions. Disentangling the contribution of these strategies to navigation is critical for understanding how memory influences behavioral output. To address this issue, we studied spatial behaviors of the chickadee, a food-caching bird. Chickadees hide food in concealed, scattered locations and retrieve their caches later in time. We designed an apparatus that allows birds to cache and retrieve food at many sites while navigating in a laboratory arena. This apparatus enabled automated tracking of behavioral variables – including caches, retrievals, and investigations of different sites. We built probabilistic models to fit these behavioral data using a combination of mnemonic and non-mnemonic factors. We found that chickadees use some navigational strategies that are independent of cache memories, including opportunistic foraging and spatial biases. They combine these strategies with spatially precise memories of which sites contain caches and which sites they have previously checked. A single memory of site contents is used in a context-dependent manner: during caching chickadees avoid sites that contain food, while during retrieval they instead preferentially access occupied sites. Our approach is a powerful way to investigate navigational decisions in a natural behavior, including flexible contributions of memory to these decisions. Humans form new memories about what is happening in their lives every day. These autobiographical memories depend on a part of the brain called the hippocampus. But how these memories are recorded remains unclear. Studying certain birds may help to provide more insight. Black-capped chickadees, for example, are memory specialists. They stash thousands of food items and use their memories to recover these hidden food stores. This behavior also relies on these birds’ hippocampus. Studying these animals' behavior in the laboratory may help scientists decode how the birds use their memories and to gain more insight about the brain processes underlying memory. Now, Applegate and Aronov show that chickadees use memory not only to retrieve food but also to decide where to hide it in the first place. In the experiments, chickadees were placed in a specialized enclosure with a grid of holes covered by silicone rubber flaps on the floor. The birds lifted the flaps with their toes or beak to hide a piece of sunflower seed underneath. Applegate and Aronov recorded and analyzed the animals’ seed hiding and retrieving behavior with a video camera to determine whether the birds were remembering the sites or happening on them by chance. This revealed that black-capped chickadees use the same memories of where they had hidden food in two different ways. When they were hiding new morsels, the birds remembered where they had stashed food and avoided those flaps. When they were retrieving food, the birds knew exactly which flaps to look under. Future experiments using this special enclosure may help scientists monitor what happens in the chickadees’ brains during these activities.
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Affiliation(s)
- Marissa C Applegate
- Mortimer B. Zuckerman Mind Brain Behavior Institute, Columbia University, New York, United States
| | - Dmitriy Aronov
- Mortimer B. Zuckerman Mind Brain Behavior Institute, Columbia University, New York, United States
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34
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Alexander AS, Tung JC, Chapman GW, Conner AM, Shelley LE, Hasselmo ME, Nitz DA. Adaptive integration of self-motion and goals in posterior parietal cortex. Cell Rep 2022; 38:110504. [PMID: 35263604 PMCID: PMC9026715 DOI: 10.1016/j.celrep.2022.110504] [Citation(s) in RCA: 11] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/13/2021] [Revised: 12/14/2021] [Accepted: 02/14/2022] [Indexed: 02/05/2023] Open
Abstract
Rats readily switch between foraging and more complex navigational behaviors such as pursuit of other rats or prey. These tasks require vastly different tracking of multiple behaviorally significant variables including self-motion state. To explore whether navigational context modulates self-motion tracking, we examined self-motion tuning in posterior parietal cortex neurons during foraging versus visual target pursuit. Animals performing the pursuit task demonstrate predictive processing of target trajectories by anticipating and intercepting them. Relative to foraging, pursuit yields multiplicative gain modulation of self-motion tuning and enhances self-motion state decoding. Self-motion sensitivity in parietal cortex neurons is, on average, history dependent regardless of behavioral context, but the temporal window of self-motion integration extends during target pursuit. Finally, many self-motion-sensitive neurons conjunctively track the visual target position relative to the animal. Thus, posterior parietal cortex functions to integrate the location of navigationally relevant target stimuli into an ongoing representation of past, present, and future locomotor trajectories.
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Affiliation(s)
- Andrew S Alexander
- Department of Cognitive Science, University of California, San Diego, La Jolla, CA 92093, USA; Center for Systems Neuroscience, Department of Psychological and Brain Sciences, Boston University, 610 Commonwealth Avenue, Boston, MA 02215, USA.
| | - Janet C Tung
- Department of Cognitive Science, University of California, San Diego, La Jolla, CA 92093, USA
| | - G William Chapman
- Center for Systems Neuroscience, Department of Psychological and Brain Sciences, Boston University, 610 Commonwealth Avenue, Boston, MA 02215, USA
| | - Allison M Conner
- Department of Cognitive Science, University of California, San Diego, La Jolla, CA 92093, USA
| | - Laura E Shelley
- Department of Cognitive Science, University of California, San Diego, La Jolla, CA 92093, USA
| | - Michael E Hasselmo
- Center for Systems Neuroscience, Department of Psychological and Brain Sciences, Boston University, 610 Commonwealth Avenue, Boston, MA 02215, USA
| | - Douglas A Nitz
- Department of Cognitive Science, University of California, San Diego, La Jolla, CA 92093, USA.
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35
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A miniature kinematic coupling device for mouse head fixation. J Neurosci Methods 2022; 372:109549. [DOI: 10.1016/j.jneumeth.2022.109549] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/15/2021] [Revised: 02/22/2022] [Accepted: 02/26/2022] [Indexed: 11/18/2022]
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36
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The role of PFC networks in cognitive control and executive function. Neuropsychopharmacology 2022; 47:90-103. [PMID: 34408276 PMCID: PMC8616903 DOI: 10.1038/s41386-021-01152-w] [Citation(s) in RCA: 155] [Impact Index Per Article: 77.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 03/08/2021] [Revised: 08/03/2021] [Accepted: 08/06/2021] [Indexed: 01/03/2023]
Abstract
Systems neuroscience approaches with a focus on large-scale brain organization and network analysis are advancing foundational knowledge of how cognitive control processes are implemented in the brain. Over the past decade, technological and computational innovations in the study of brain connectivity have led to advances in our understanding of how brain networks function, inspiring new conceptualizations of the role of prefrontal cortex (PFC) networks in the coordination of cognitive control. In this review, we describe six key PFC networks involved in cognitive control and elucidate key principles relevant for understanding how these networks implement cognitive control. Implementation of cognitive control in a constantly changing environment depends on the dynamic and flexible organization of PFC networks. In this context, we describe major empirical and theoretical models that have emerged in recent years and describe how their functional architecture and dynamic organization supports flexible cognitive control. We take an overarching view of advances made in the past few decades and consider fundamental issues regarding PFC network function, global brain dynamics, and cognition that still need to be resolved. We conclude by clarifying important future directions for research on cognitive control and their implications for advancing our understanding of PFC networks in brain disorders.
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37
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Wang S, Feng SF, Bornstein AM. Mixing memory and desire: How memory reactivation supports deliberative decision-making. WILEY INTERDISCIPLINARY REVIEWS. COGNITIVE SCIENCE 2021; 13:e1581. [PMID: 34665529 DOI: 10.1002/wcs.1581] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/07/2020] [Revised: 08/24/2021] [Accepted: 09/16/2021] [Indexed: 11/09/2022]
Abstract
Memories affect nearly every aspect of our mental life. They allow us to both resolve uncertainty in the present and to construct plans for the future. Recently, renewed interest in the role memory plays in adaptive behavior has led to new theoretical advances and empirical observations. We review key findings, with particular emphasis on how the retrieval of many kinds of memories affects deliberative action selection. These results are interpreted in a sequential inference framework, in which reinstatements from memory serve as "samples" of potential action outcomes. The resulting model suggests a central role for the dynamics of memory reactivation in determining the influence of different kinds of memory in decisions. We propose that representation-specific dynamics can implement a bottom-up "product of experts" rule that integrates multiple sets of action-outcome predictions weighted based on their uncertainty. We close by reviewing related findings and identifying areas for further research. This article is categorized under: Psychology > Reasoning and Decision Making Neuroscience > Cognition Neuroscience > Computation.
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Affiliation(s)
- Shaoming Wang
- Department of Psychology, New York University, New York, New York, USA
| | - Samuel F Feng
- Department of Mathematics, Khalifa University of Science and Technology, Abu Dhabi, UAE.,Khalifa University Centre for Biotechnology, Khalifa University of Science and Technology, Abu Dhabi, UAE
| | - Aaron M Bornstein
- Department of Cognitive Sciences, University of California-Irvine, Irvine, California, USA.,Center for the Neurobiology of Learning & Memory, University of California-Irvine, Irvine, California, USA.,Institute for Mathematical Behavioral Sciences, University of California-Irvine, Irvine, California, USA
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38
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Abstract
We live in a world that changes on many timescales. To learn and make decisions appropriately, the human brain has evolved to integrate various types of information, such as sensory evidence and reward feedback, on multiple timescales. This is reflected in cortical hierarchies of timescales consisting of heterogeneous neuronal activities and expression of genes related to neurotransmitters critical for learning. We review the recent findings on how timescales of sensory and reward integration are affected by the temporal properties of sensory and reward signals in the environment. Despite existing evidence linking behavioral and neuronal timescales, future studies must examine how neural computations at multiple timescales are adjusted and combined to influence behavior flexibly.
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Affiliation(s)
- Alireza Soltani
- Department of Psychological and Brain Sciences, Dartmouth College, Moore Hall, 3 Maynard St, Hanover, NH 03755
| | - John D. Murray
- Department of Psychiatry, Yale School of Medicine, 300 George Street, New Haven, CT 06511
| | - Hyojung Seo
- Department of Psychiatry, Yale School of Medicine, 300 George Street, New Haven, CT 06511
| | - Daeyeol Lee
- The Zanvyl Krieger Mind/Brain Institute, Department of Neuroscience, Department of Psychological Sciences, Kavli Neuroscience Discovery Institute, Johns Hopkins University, 3400 North Charles Street, Baltimore, MD 21218
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Schreiner DC, Yalcinbas EA, Gremel CM. A Push For Examining Subjective Experience in Value-Based Decision-Making. Curr Opin Behav Sci 2021; 41:45-49. [PMID: 34056054 PMCID: PMC8153361 DOI: 10.1016/j.cobeha.2021.03.020] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Subjective experience is a powerful contributor to value-based decision-making. Not every decision is the same, nor made in isolation. Rather, decision-making relies on historical information and internal states for adaptive control. Hence, it is inherently continuous with respect to time - one decision or action evolves into the next. However, forays into the neurobiological underpinnings of decision-making have too frequently ignored the contribution of such continuous subjective experience, instead tying circuit activity and brain area involvement to discrete averaged behaviors and task parameters. While much information has been gained through these investigations, recent works have demonstrated the potential for a greater understanding of neural mechanisms when the continuous, experiential nature of behavior is integrated into the investigation. Such integration has important implications for disease states with disordered decision-making such as addiction, where subjective experience is a large contributor to the disorder.
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Affiliation(s)
- Drew C. Schreiner
- The Department of Psychology, University of California San Diego, La Jolla, CA 92093, USA
| | - Ege A. Yalcinbas
- The Neurosciences Graduate Program, University of California San Diego, La Jolla, CA 92093, USA
| | - Christina M. Gremel
- The Department of Psychology, University of California San Diego, La Jolla, CA 92093, USA
- The Neurosciences Graduate Program, University of California San Diego, La Jolla, CA 92093, USA
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40
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Abstract
Working memory (WM) is the ability to maintain and manipulate information in the conscious mind over a timescale of seconds. This ability is thought to be maintained through the persistent discharges of neurons in a network of brain areas centered on the prefrontal cortex, as evidenced by neurophysiological recordings in nonhuman primates, though both the localization and the neural basis of WM has been a matter of debate in recent years. Neural correlates of WM are evident in species other than primates, including rodents and corvids. A specialized network of excitatory and inhibitory neurons, aided by neuromodulatory influences of dopamine, is critical for the maintenance of neuronal activity. Limitations in WM capacity and duration, as well as its enhancement during development, can be attributed to properties of neural activity and circuits. Changes in these factors can be observed through training-induced improvements and in pathological impairments. WM thus provides a prototypical cognitive function whose properties can be tied to the spiking activity of brain neurons. © 2021 American Physiological Society. Compr Physiol 11:1-41, 2021.
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Affiliation(s)
- Russell J Jaffe
- Department of Neurobiology & Anatomy, Wake Forest School of Medicine, Winston-Salem, North Carolina, USA
| | - Christos Constantinidis
- Department of Neurobiology & Anatomy, Wake Forest School of Medicine, Winston-Salem, North Carolina, USA
- Department of Biomedical Engineering, Vanderbilt University, Nashville, Tennessee, USA
- Neuroscience Program, Vanderbilt University, Nashville, Tennessee, USA
- Department of Ophthalmology and Visual Sciences, Vanderbilt University Medical Center, Nashville, Tennessee, USA
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41
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Hwang EJ, Sato TR, Sato TK. A Canonical Scheme of Bottom-Up and Top-Down Information Flows in the Frontoparietal Network. Front Neural Circuits 2021; 15:691314. [PMID: 34475815 PMCID: PMC8406690 DOI: 10.3389/fncir.2021.691314] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/06/2021] [Accepted: 07/21/2021] [Indexed: 11/25/2022] Open
Abstract
Goal-directed behavior often involves temporal separation and flexible context-dependent association between sensory input and motor output. The control of goal-directed behavior is proposed to lie in the frontoparietal network, but the computational architecture of this network remains elusive. Based on recent rodent studies that measured and manipulated projection neurons in the frontoparietal network together with findings from earlier primate studies, we propose a canonical scheme of information flows in this network. The parietofrontal pathway transmits the spatial information of a sensory stimulus or internal motor bias to drive motor programs in the frontal areas. This pathway might consist of multiple parallel connections, each controlling distinct motor effectors. The frontoparietal pathway sends the spatial information of cognitively processed motor plans through multiple parallel connections. Each of these connections could support distinct spatial functions that use the motor target information, including attention allocation, multi-body part coordination, and forward estimation of movement state (i.e., forward models). The parallel pathways in the frontoparietal network enable dynamic interactions between regions that are tuned for specific goal-directed behaviors. This scheme offers a promising framework within which the computational architecture of the frontoparietal network and the underlying circuit mechanisms can be delineated in a systematic way, providing a holistic understanding of information processing in this network. Clarifying this network may also improve the diagnosis and treatment of behavioral deficits associated with dysfunctional frontoparietal connectivity in various neurological disorders including Alzheimer's disease.
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Affiliation(s)
- Eun Jung Hwang
- Stanson Toshok Center for Brain Function and Repair, Brain Science Institute, Rosalind Franklin University of Medicine and Science, North Chicago, IL, United States
- Cell Biology and Anatomy, Chicago Medical School, Rosalind Franklin University of Medicine and Science, North Chicago, IL, United States
| | - Takashi R. Sato
- Department of Neuroscience, Medical University of South Carolina, Charleston, SC, United States
| | - Tatsuo K. Sato
- Department of Physiology, Monash University, Clayton, VIC, Australia
- Neuroscience Program, Biomedicine Discovery Institute, Monash University, Clayton, VIC, Australia
- PRESTO, Japan Science and Technology Agency, Kawaguchi, Japan
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42
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Ramirez AD, Aksay ERF. Ramp-to-threshold dynamics in a hindbrain population controls the timing of spontaneous saccades. Nat Commun 2021; 12:4145. [PMID: 34230474 PMCID: PMC8260785 DOI: 10.1038/s41467-021-24336-w] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/30/2019] [Accepted: 06/11/2021] [Indexed: 02/06/2023] Open
Abstract
Organisms have the capacity to make decisions based solely on internal drives. However, it is unclear how neural circuits form decisions in the absence of sensory stimuli. Here we provide a comprehensive map of the activity patterns underlying the generation of saccades made in the absence of visual stimuli. We perform calcium imaging in the larval zebrafish to discover a range of responses surrounding spontaneous saccades, from cells that display tonic discharge only during fixations to neurons whose activity rises in advance of saccades by multiple seconds. When we lesion cells in these populations we find that ablation of neurons with pre-saccadic rise delays saccade initiation. We analyze spontaneous saccade initiation using a ramp-to-threshold model and are able to predict the times of upcoming saccades using pre-saccadic activity. These findings suggest that ramping of neuronal activity to a bound is a critical component of self-initiated saccadic movements.
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Affiliation(s)
- Alexandro D Ramirez
- Institute for Computational Biomedicine and the Department of Physiology and Biophysics, Weill Cornell Medicine, New York, NY, USA.
| | - Emre R F Aksay
- Institute for Computational Biomedicine and the Department of Physiology and Biophysics, Weill Cornell Medicine, New York, NY, USA
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43
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Booras A, Stevenson T, McCormack CN, Rhoads ME, Hanks TD. Change point detection with multiple alternatives reveals parallel evaluation of the same stream of evidence along distinct timescales. Sci Rep 2021; 11:13098. [PMID: 34162943 PMCID: PMC8222317 DOI: 10.1038/s41598-021-92470-y] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/30/2020] [Accepted: 06/08/2021] [Indexed: 11/09/2022] Open
Abstract
In order to behave appropriately in a rapidly changing world, individuals must be able to detect when changes occur in that environment. However, at any given moment, there are a multitude of potential changes of behavioral significance that could occur. Here we investigate how knowledge about the space of possible changes affects human change point detection. We used a stochastic auditory change point detection task that allowed model-free and model-based characterization of the decision process people employ. We found that subjects can simultaneously apply distinct timescales of evidence evaluation to the same stream of evidence when there are multiple types of changes possible. Informative cues that specified the nature of the change led to improved accuracy for change point detection through mechanisms involving both the timescales of evidence evaluation and adjustments of decision bounds. These results establish three important capacities of information processing for decision making that any proposed neural mechanism of evidence evaluation must be able to support: the ability to simultaneously employ multiple timescales of evidence evaluation, the ability to rapidly adjust those timescales, and the ability to modify the amount of information required to make a decision in the context of flexible timescales.
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Affiliation(s)
- Alexa Booras
- grid.27860.3b0000 0004 1936 9684Center for Neuroscience, University of California Davis, Davis, CA USA
| | - Tanner Stevenson
- grid.27860.3b0000 0004 1936 9684Center for Neuroscience, University of California Davis, Davis, CA USA
| | - Connor N. McCormack
- grid.27860.3b0000 0004 1936 9684Center for Neuroscience, University of California Davis, Davis, CA USA
| | - Marie E. Rhoads
- grid.27860.3b0000 0004 1936 9684Center for Neuroscience, University of California Davis, Davis, CA USA ,grid.19006.3e0000 0000 9632 6718Department of Neuroscience, University of California Los Angeles, Los Angeles, CA USA
| | - Timothy D. Hanks
- grid.27860.3b0000 0004 1936 9684Center for Neuroscience, University of California Davis, Davis, CA USA ,grid.27860.3b0000 0004 1936 9684Department of Neurology, University of California Davis, Sacramento, CA USA
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44
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Orsolic I, Rio M, Mrsic-Flogel TD, Znamenskiy P. Mesoscale cortical dynamics reflect the interaction of sensory evidence and temporal expectation during perceptual decision-making. Neuron 2021; 109:1861-1875.e10. [PMID: 33861941 PMCID: PMC8186564 DOI: 10.1016/j.neuron.2021.03.031] [Citation(s) in RCA: 28] [Impact Index Per Article: 9.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/21/2019] [Revised: 01/17/2021] [Accepted: 03/25/2021] [Indexed: 01/01/2023]
Abstract
How sensory evidence is transformed across multiple brain regions to influence behavior remains poorly understood. We trained mice in a visual change detection task designed to separate the covert antecedents of choices from activity associated with their execution. Wide-field calcium imaging across the dorsal cortex revealed fundamentally different dynamics of activity underlying these processes. Although signals related to execution of choice were widespread, fluctuations in sensory evidence in the absence of overt motor responses triggered a confined activity cascade, beginning with transient modulation of visual cortex and followed by sustained recruitment of the secondary and primary motor cortex. Activation of the motor cortex by sensory evidence was modulated by animals' expectation of when the stimulus was likely to change. These results reveal distinct activation timescales of specific cortical areas by sensory evidence during decision-making and show that recruitment of the motor cortex depends on the interaction of sensory evidence and temporal expectation.
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Affiliation(s)
- Ivana Orsolic
- Sainsbury Wellcome Centre, University College London, 25 Howland Street, London W1T 4JG, UK; Biozentrum, University of Basel, Klingelbergstrasse 70, 4056 Basel, Switzerland
| | - Maxime Rio
- Sainsbury Wellcome Centre, University College London, 25 Howland Street, London W1T 4JG, UK; Biozentrum, University of Basel, Klingelbergstrasse 70, 4056 Basel, Switzerland; The National Institute of Water and Atmospheric Research, 301 Evans Bay Parade, Hataitai, Wellington 6021, New Zealand
| | - Thomas D Mrsic-Flogel
- Sainsbury Wellcome Centre, University College London, 25 Howland Street, London W1T 4JG, UK; Biozentrum, University of Basel, Klingelbergstrasse 70, 4056 Basel, Switzerland.
| | - Petr Znamenskiy
- Sainsbury Wellcome Centre, University College London, 25 Howland Street, London W1T 4JG, UK; Biozentrum, University of Basel, Klingelbergstrasse 70, 4056 Basel, Switzerland; The Francis Crick Institute, 1 Midland Road, London NW1 1AT, UK.
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45
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Chicharro D, Panzeri S, Haefner RM. Stimulus-dependent relationships between behavioral choice and sensory neural responses. eLife 2021; 10:e54858. [PMID: 33825683 PMCID: PMC8184215 DOI: 10.7554/elife.54858] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/02/2020] [Accepted: 04/06/2021] [Indexed: 01/16/2023] Open
Abstract
Understanding perceptual decision-making requires linking sensory neural responses to behavioral choices. In two-choice tasks, activity-choice covariations are commonly quantified with a single measure of choice probability (CP), without characterizing their changes across stimulus levels. We provide theoretical conditions for stimulus dependencies of activity-choice covariations. Assuming a general decision-threshold model, which comprises both feedforward and feedback processing and allows for a stimulus-modulated neural population covariance, we analytically predict a very general and previously unreported stimulus dependence of CPs. We develop new tools, including refined analyses of CPs and generalized linear models with stimulus-choice interactions, which accurately assess the stimulus- or choice-driven signals of each neuron, characterizing stimulus-dependent patterns of choice-related signals. With these tools, we analyze CPs of macaque MT neurons during a motion discrimination task. Our analysis provides preliminary empirical evidence for the promise of studying stimulus dependencies of choice-related signals, encouraging further assessment in wider data sets.
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Affiliation(s)
- Daniel Chicharro
- Neural Computation Laboratory, Center for Neuroscience and Cognitive Systems@UniTn, Istituto Italiano di TecnologiaRoveretoItaly
- Department of Neurobiology, Harvard Medical SchoolBostonUnited States
| | - Stefano Panzeri
- Neural Computation Laboratory, Center for Neuroscience and Cognitive Systems@UniTn, Istituto Italiano di TecnologiaRoveretoItaly
| | - Ralf M Haefner
- Brain and Cognitive Sciences, Center for Visual Science, University of RochesterRochesterUnited States
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46
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Talluri BC, Urai AE, Bronfman ZZ, Brezis N, Tsetsos K, Usher M, Donner TH. Choices change the temporal weighting of decision evidence. J Neurophysiol 2021; 125:1468-1481. [PMID: 33689508 PMCID: PMC8285578 DOI: 10.1152/jn.00462.2020] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/03/2020] [Revised: 02/16/2021] [Accepted: 03/04/2021] [Indexed: 12/02/2022] Open
Abstract
Many decisions result from the accumulation of decision-relevant information (evidence) over time. Even when maximizing decision accuracy requires weighting all the evidence equally, decision-makers often give stronger weight to evidence occurring early or late in the evidence stream. Here, we show changes in such temporal biases within participants as a function of intermittent judgments about parts of the evidence stream. Human participants performed a decision task that required a continuous estimation of the mean evidence at the end of the stream. The evidence was either perceptual (noisy random dot motion) or symbolic (variable sequences of numbers). Participants also reported a categorical judgment of the preceding evidence half-way through the stream in one condition or executed an evidence-independent motor response in another condition. The relative impact of early versus late evidence on the final estimation flipped between these two conditions. In particular, participants' sensitivity to late evidence after the intermittent judgment, but not the simple motor response, was decreased. Both the intermittent response as well as the final estimation reports were accompanied by nonluminance-mediated increases of pupil diameter. These pupil dilations were bigger during intermittent judgments than simple motor responses and bigger during estimation when the late evidence was consistent than inconsistent with the initial judgment. In sum, decisions activate pupil-linked arousal systems and alter the temporal weighting of decision evidence. Our results are consistent with the idea that categorical choices in the face of uncertainty induce a change in the state of the neural circuits underlying decision-making.NEW & NOTEWORTHY The psychology and neuroscience of decision-making have extensively studied the accumulation of decision-relevant information toward a categorical choice. Much fewer studies have assessed the impact of a choice on the processing of subsequent information. Here, we show that intermittent choices during a protracted stream of input reduce the sensitivity to subsequent decision information and transiently boost arousal. Choices might trigger a state change in the neural machinery for decision-making.
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Affiliation(s)
- Bharath Chandra Talluri
- Department of Neurophysiology and Pathophysiology, University Medical Center Hamburg-Eppendorf, Hamburg, Germany
| | - Anne E Urai
- Department of Neurophysiology and Pathophysiology, University Medical Center Hamburg-Eppendorf, Hamburg, Germany
- Department of Psychology, University of Amsterdam, Amsterdam, The Netherlands
| | | | - Noam Brezis
- School of Psychology, Tel-Aviv University, Tel-Aviv, Israel
| | - Konstantinos Tsetsos
- Department of Neurophysiology and Pathophysiology, University Medical Center Hamburg-Eppendorf, Hamburg, Germany
| | - Marius Usher
- School of Psychology, Tel-Aviv University, Tel-Aviv, Israel
- Sagol School of Neuroscience, Tel-Aviv University, Tel-Aviv, Israel
| | - Tobias H Donner
- Department of Neurophysiology and Pathophysiology, University Medical Center Hamburg-Eppendorf, Hamburg, Germany
- Department of Psychology, University of Amsterdam, Amsterdam, The Netherlands
- Amsterdam Brain and Cognition Center, University of Amsterdam, Amsterdam, The Netherlands
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47
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Bale MR, Bitzidou M, Giusto E, Kinghorn P, Maravall M. Sequence Learning Induces Selectivity to Multiple Task Parameters in Mouse Somatosensory Cortex. Curr Biol 2021; 31:473-485.e5. [PMID: 33186553 PMCID: PMC7883307 DOI: 10.1016/j.cub.2020.10.059] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/17/2020] [Revised: 09/01/2020] [Accepted: 10/20/2020] [Indexed: 11/20/2022]
Abstract
Sequential temporal ordering and patterning are key features of natural signals, used by the brain to decode stimuli and perceive them as sensory objects. To explore how cortical neuronal activity underpins sequence discrimination, we developed a task in which mice distinguished between tactile "word" sequences constructed from distinct vibrations delivered to the whiskers, assembled in different orders. Animals licked to report the presence of the target sequence. Mice could respond to the earliest possible cues allowing discrimination, effectively solving the task as a "detection of change" problem, but enhanced their performance when responding later. Optogenetic inactivation showed that the somatosensory cortex was necessary for sequence discrimination. Two-photon imaging in layer 2/3 of the primary somatosensory "barrel" cortex (S1bf) revealed that, in well-trained animals, neurons had heterogeneous selectivity to multiple task variables including not just sensory input but also the animal's action decision and the trial outcome (presence or absence of the predicted reward). Many neurons were activated preceding goal-directed licking, thus reflecting the animal's learned action in response to the target sequence; these neurons were found as soon as mice learned to associate the rewarded sequence with licking. In contrast, learning evoked smaller changes in sensory response tuning: neurons responding to stimulus features were found in naive mice, and training did not generate neurons with enhanced temporal integration or categorical responses. Therefore, in S1bf, sequence learning results in neurons whose activity reflects the learned association between target sequence and licking rather than a refined representation of sensory features.
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Affiliation(s)
- Michael R Bale
- Sussex Neuroscience, School of Life Sciences, University of Sussex, Brighton BN1 9QG, UK
| | - Malamati Bitzidou
- Sussex Neuroscience, School of Life Sciences, University of Sussex, Brighton BN1 9QG, UK
| | - Elena Giusto
- Sussex Neuroscience, School of Life Sciences, University of Sussex, Brighton BN1 9QG, UK
| | - Paul Kinghorn
- Sussex Neuroscience, School of Life Sciences, University of Sussex, Brighton BN1 9QG, UK
| | - Miguel Maravall
- Sussex Neuroscience, School of Life Sciences, University of Sussex, Brighton BN1 9QG, UK.
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48
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Yang JH, Kwan AC. Secondary motor cortex: Broadcasting and biasing animal's decisions through long-range circuits. INTERNATIONAL REVIEW OF NEUROBIOLOGY 2020; 158:443-470. [PMID: 33785155 PMCID: PMC8190828 DOI: 10.1016/bs.irn.2020.11.008] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Abstract
Medial secondary motor cortex (MOs or M2) constitutes the dorsal aspect of the rodent medial frontal cortex. We previously proposed that the function of MOs is to link antecedent conditions, including sensory stimuli and prior choices, to impending actions. In this review, we focus on the long-range pathways between MOs and other cortical and subcortical regions. We highlight three circuits: (1) connections with visual and auditory cortices that are essential for predictive coding of perceptual inputs; (2) connections with motor cortex and brainstem that are responsible for top-down, context-dependent modulation of movements; (3) connections with retrosplenial cortex, orbitofrontal cortex, and basal ganglia that facilitate reward-based learning. Together, these long-range circuits allow MOs to broadcast choice signals for feedback and to bias decision-making processes.
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Affiliation(s)
- Jen-Hau Yang
- Department of Psychiatry, Yale University School of Medicine, New Haven, CT, United States
| | - Alex C Kwan
- Department of Psychiatry, Yale University School of Medicine, New Haven, CT, United States; Department of Neuroscience, Yale University School of Medicine, New Haven, CT, United States.
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49
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Cavanagh SE, Hunt LT, Kennerley SW. A Diversity of Intrinsic Timescales Underlie Neural Computations. Front Neural Circuits 2020; 14:615626. [PMID: 33408616 PMCID: PMC7779632 DOI: 10.3389/fncir.2020.615626] [Citation(s) in RCA: 35] [Impact Index Per Article: 8.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/09/2020] [Accepted: 11/18/2020] [Indexed: 12/05/2022] Open
Abstract
Neural processing occurs across a range of temporal scales. To facilitate this, the brain uses fast-changing representations reflecting momentary sensory input alongside more temporally extended representations, which integrate across both short and long temporal windows. The temporal flexibility of these representations allows animals to behave adaptively. Short temporal windows facilitate adaptive responding in dynamic environments, while longer temporal windows promote the gradual integration of information across time. In the cognitive and motor domains, the brain sets overarching goals to be achieved within a long temporal window, which must be broken down into sequences of actions and precise movement control processed across much shorter temporal windows. Previous human neuroimaging studies and large-scale artificial network models have ascribed different processing timescales to different cortical regions, linking this to each region's position in an anatomical hierarchy determined by patterns of inter-regional connectivity. However, even within cortical regions, there is variability in responses when studied with single-neuron electrophysiology. Here, we review a series of recent electrophysiology experiments that demonstrate the heterogeneity of temporal receptive fields at the level of single neurons within a cortical region. This heterogeneity appears functionally relevant for the computations that neurons perform during decision-making and working memory. We consider anatomical and biophysical mechanisms that may give rise to a heterogeneity of timescales, including recurrent connectivity, cortical layer distribution, and neurotransmitter receptor expression. Finally, we reflect on the computational relevance of each brain region possessing a heterogeneity of neuronal timescales. We argue that this architecture is of particular importance for sensory, motor, and cognitive computations.
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Affiliation(s)
- Sean E. Cavanagh
- Department of Clinical and Movement Neurosciences, University College London, London, United Kingdom
| | - Laurence T. Hunt
- Department of Clinical and Movement Neurosciences, University College London, London, United Kingdom
- Wellcome Trust Centre for Neuroimaging, University College London, London, United Kingdom
- Max Planck-UCL Centre for Computational Psychiatry and Aging, University College London, London, United Kingdom
- Department of Psychiatry, Wellcome Centre for Integrative Neuroimaging, University of Oxford, Oxford, United Kingdom
| | - Steven W. Kennerley
- Department of Clinical and Movement Neurosciences, University College London, London, United Kingdom
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50
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Koay SA, Thiberge S, Brody CD, Tank DW. Amplitude modulations of cortical sensory responses in pulsatile evidence accumulation. eLife 2020; 9:e60628. [PMID: 33263278 PMCID: PMC7811404 DOI: 10.7554/elife.60628] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/01/2020] [Accepted: 11/30/2020] [Indexed: 12/27/2022] Open
Abstract
How does the brain internally represent a sequence of sensory information that jointly drives a decision-making behavior? Studies of perceptual decision-making have often assumed that sensory cortices provide noisy but otherwise veridical sensory inputs to downstream processes that accumulate and drive decisions. However, sensory processing in even the earliest sensory cortices can be systematically modified by various external and internal contexts. We recorded from neuronal populations across posterior cortex as mice performed a navigational decision-making task based on accumulating randomly timed pulses of visual evidence. Even in V1, only a small fraction of active neurons had sensory-like responses time-locked to each pulse. Here, we focus on how these 'cue-locked' neurons exhibited a variety of amplitude modulations from sensory to cognitive, notably by choice and accumulated evidence. These task-related modulations affected a large fraction of cue-locked neurons across posterior cortex, suggesting that future models of behavior should account for such influences.
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Affiliation(s)
- Sue Ann Koay
- Princeton Neuroscience Institute, Princeton UniversityPrincetonUnited States
| | - Stephan Thiberge
- Bezos Center for Neural Circuit Dynamics, Princeton UniversityPrincetonUnited States
| | - Carlos D Brody
- Princeton Neuroscience Institute, Princeton UniversityPrincetonUnited States
- Howard Hughes Medical Institute, Princeton UniversityPrincetonUnited States
| | - David W Tank
- Princeton Neuroscience Institute, Princeton UniversityPrincetonUnited States
- Bezos Center for Neural Circuit Dynamics, Princeton UniversityPrincetonUnited States
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