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Yi D, Yao Y, Wang Y, Chen L. Design, Fabrication, and Implantation of Invasive Microelectrode Arrays as in vivo Brain Machine Interfaces: A Comprehensive Review. JOURNAL OF MANUFACTURING PROCESSES 2024; 126:185-207. [PMID: 39185373 PMCID: PMC11340637 DOI: 10.1016/j.jmapro.2024.07.100] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 08/27/2024]
Abstract
Invasive Microelectrode Arrays (MEAs) have been a significant and useful tool for us to gain a fundamental understanding of how the brain works through high spatiotemporal resolution neuron-level recordings and/or stimulations. Through decades of research, various types of microwire, silicon, and flexible substrate-based MEAs have been developed using the evolving new materials, novel design concepts, and cutting-edge advanced manufacturing capabilities. Surgical implantation of the latest minimal damaging flexible MEAs through the hard-to-penetrate brain membranes introduces new challenges and thus the development of implantation strategies and instruments for the latest MEAs. In this paper, studies on the design considerations and enabling manufacturing processes of various invasive MEAs as in vivo brain-machine interfaces have been reviewed to facilitate the development as well as the state-of-art of such brain-machine interfaces from an engineering perspective. The challenges and solution strategies developed for surgically implanting such interfaces into the brain have also been evaluated and summarized. Finally, the research gaps have been identified in the design, manufacturing, and implantation perspectives, and future research prospects in invasive MEA development have been proposed.
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Affiliation(s)
- Dongyang Yi
- Department of Mechanical and Industrial Engineering, University of Massachusetts Lowell, Lowell, MA 01854
| | - Yao Yao
- Department of Industrial and Systems Engineering, University of Missouri, Columbia, MO 65211
| | - Yi Wang
- Department of Industrial and Systems Engineering, University of Missouri, Columbia, MO 65211
| | - Lei Chen
- Department of Mechanical and Industrial Engineering, University of Massachusetts Lowell, Lowell, MA 01854
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2
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Tian Z, Chen J, Zhang C, Min B, Xu B, Wang L. Mental programming of spatial sequences in working memory in the macaque frontal cortex. Science 2024; 385:eadp6091. [PMID: 39325894 DOI: 10.1126/science.adp6091] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/04/2024] [Accepted: 07/12/2024] [Indexed: 09/28/2024]
Abstract
How the brain mentally sorts a series of items in a specific order within working memory (WM) remains largely unknown. We investigated mental sorting using high-throughput electrophysiological recordings in the frontal cortex of macaque monkeys, who memorized and sorted spatial sequences in forward or backward orders according to visual cues. We discovered that items at each ordinal rank in WM were encoded in separate rank-WM subspaces and then, depending on cues, were maintained or reordered between the subspaces, accompanied by two extra temporary subspaces in two operation steps. Furthermore, the cue activity served as an indexical signal to trigger sorting processes. Thus, we propose a complete conceptual framework, where the neural landscape transitions in frontal neural states underlie the symbolic system for mental programming of sequence WM.
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Affiliation(s)
- Zhenghe Tian
- Institute of Neuroscience, Key Laboratory of Brain Cognition and Brain-Inspired Intelligence Technology, CAS Center for Excellence in Brain Science and Intelligence Technology, Chinese Academy of Sciences, Shanghai 200031, China
- Institute of Automation, Chinese Academy of Sciences, Beijing 100190, China
- School of Artificial Intelligence, University of Chinese Academy of Sciences, Beijing 100049, China
| | - Jingwen Chen
- Institute of Neuroscience, Key Laboratory of Brain Cognition and Brain-Inspired Intelligence Technology, CAS Center for Excellence in Brain Science and Intelligence Technology, Chinese Academy of Sciences, Shanghai 200031, China
| | - Cong Zhang
- Institute of Neuroscience, Key Laboratory of Brain Cognition and Brain-Inspired Intelligence Technology, CAS Center for Excellence in Brain Science and Intelligence Technology, Chinese Academy of Sciences, Shanghai 200031, China
| | - Bin Min
- Lingang Laboratory, Shanghai 200031, China
| | - Bo Xu
- Institute of Automation, Chinese Academy of Sciences, Beijing 100190, China
- School of Artificial Intelligence, University of Chinese Academy of Sciences, Beijing 100049, China
| | - Liping Wang
- Institute of Neuroscience, Key Laboratory of Brain Cognition and Brain-Inspired Intelligence Technology, CAS Center for Excellence in Brain Science and Intelligence Technology, Chinese Academy of Sciences, Shanghai 200031, China
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3
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Bennett C, Ouellette B, Ramirez TK, Cahoon A, Cabasco H, Browning Y, Lakunina A, Lynch GF, McBride EG, Belski H, Gillis R, Grasso C, Howard R, Johnson T, Loeffler H, Smith H, Sullivan D, Williford A, Caldejon S, Durand S, Gale S, Guthrie A, Ha V, Han W, Hardcastle B, Mochizuki C, Sridhar A, Suarez L, Swapp J, Wilkes J, Siegle JH, Farrell C, Groblewski PA, Olsen SR. SHIELD: Skull-shaped hemispheric implants enabling large-scale electrophysiology datasets in the mouse brain. Neuron 2024; 112:2869-2885.e8. [PMID: 38996587 DOI: 10.1016/j.neuron.2024.06.015] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/12/2024] [Revised: 05/02/2024] [Accepted: 06/18/2024] [Indexed: 07/14/2024]
Abstract
To understand the neural basis of behavior, it is essential to measure spiking dynamics across many interacting brain regions. Although new technologies, such as Neuropixels probes, facilitate multi-regional recordings, significant surgical and procedural hurdles remain for these experiments to achieve their full potential. Here, we describe skull-shaped hemispheric implants enabling large-scale electrophysiology datasets (SHIELD). These 3D-printed skull-replacement implants feature customizable insertion holes, allowing dozens of cortical and subcortical structures to be recorded in a single mouse using repeated multi-probe insertions over many days. We demonstrate the procedure's high success rate, biocompatibility, lack of adverse effects on behavior, and compatibility with imaging and optogenetics. To showcase SHIELD's scientific utility, we use multi-probe recordings to reveal novel insights into how alpha rhythms organize spiking activity across visual and sensorimotor networks. Overall, this method enables powerful, large-scale electrophysiological experiments for the study of distributed neural computation.
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Affiliation(s)
- Corbett Bennett
- Allen Institute for Neural Dynamics, Seattle, WA 98109, USA.
| | - Ben Ouellette
- Allen Institute for Neural Dynamics, Seattle, WA 98109, USA
| | | | | | - Hannah Cabasco
- Allen Institute for Neural Dynamics, Seattle, WA 98109, USA
| | - Yoni Browning
- Allen Institute for Neural Dynamics, Seattle, WA 98109, USA
| | - Anna Lakunina
- Allen Institute for Neural Dynamics, Seattle, WA 98109, USA
| | - Galen F Lynch
- Allen Institute for Neural Dynamics, Seattle, WA 98109, USA
| | | | - Hannah Belski
- Allen Institute for Neural Dynamics, Seattle, WA 98109, USA
| | - Ryan Gillis
- Allen Institute for Neural Dynamics, Seattle, WA 98109, USA
| | - Conor Grasso
- Allen Institute for Neural Dynamics, Seattle, WA 98109, USA
| | - Robert Howard
- Allen Institute for Neural Dynamics, Seattle, WA 98109, USA
| | - Tye Johnson
- Allen Institute for Neural Dynamics, Seattle, WA 98109, USA
| | - Henry Loeffler
- Allen Institute for Neural Dynamics, Seattle, WA 98109, USA
| | - Heston Smith
- Allen Institute for Neural Dynamics, Seattle, WA 98109, USA
| | | | | | | | | | - Samuel Gale
- Allen Institute for Neural Dynamics, Seattle, WA 98109, USA
| | - Alan Guthrie
- Allen Institute for Neural Dynamics, Seattle, WA 98109, USA
| | - Vivian Ha
- Allen Institute for Neural Dynamics, Seattle, WA 98109, USA
| | - Warren Han
- Allen Institute for Neural Dynamics, Seattle, WA 98109, USA
| | - Ben Hardcastle
- Allen Institute for Neural Dynamics, Seattle, WA 98109, USA
| | | | - Arjun Sridhar
- Allen Institute for Neural Dynamics, Seattle, WA 98109, USA
| | - Lucas Suarez
- Allen Institute for Neural Dynamics, Seattle, WA 98109, USA
| | - Jackie Swapp
- Allen Institute for Neural Dynamics, Seattle, WA 98109, USA
| | - Joshua Wilkes
- Allen Institute for Neural Dynamics, Seattle, WA 98109, USA
| | | | | | | | - Shawn R Olsen
- Allen Institute for Neural Dynamics, Seattle, WA 98109, USA.
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4
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Chen J, Zhang C, Hu P, Min B, Wang L. Flexible control of sequence working memory in the macaque frontal cortex. Neuron 2024:S0896-6273(24)00569-5. [PMID: 39178858 DOI: 10.1016/j.neuron.2024.07.024] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/10/2023] [Revised: 04/10/2024] [Accepted: 07/29/2024] [Indexed: 08/26/2024]
Abstract
To memorize a sequence, one must serially bind each item to its rank order. How the brain controls a given input to bind its associated order in sequence working memory (SWM) remains unexplored. Here, we investigated the neural representations underlying SWM control using electrophysiological recordings in the frontal cortex of macaque monkeys performing forward and backward SWM tasks. Separate and generalizable low-dimensional subspaces for sensory and memory information were found within the same frontal circuitry, and SWM control was reflected in these neural subspaces' organized dynamics. Each item at each rank was sequentially entered into a common sensory subspace and, depending on forward or backward task requirement, flexibly and timely sent into rank-selective SWM subspaces. Neural activity in these SWM subspaces faithfully predicted the recalled item and order information in single error trials. Thus, compositional neural population codes with well-orchestrated dynamics in frontal cortex support the flexible control of SWM.
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Affiliation(s)
- Jingwen Chen
- Institute of Neuroscience, Key Laboratory of Brain Cognition and Brain-Inspired Intelligence Technology, CAS Center for Excellence in Brain Science and Intelligence Technology, Chinese Academy of Sciences, Shanghai 200031, China
| | - Cong Zhang
- Institute of Neuroscience, Key Laboratory of Brain Cognition and Brain-Inspired Intelligence Technology, CAS Center for Excellence in Brain Science and Intelligence Technology, Chinese Academy of Sciences, Shanghai 200031, China
| | - Peiyao Hu
- Institute of Neuroscience, Key Laboratory of Brain Cognition and Brain-Inspired Intelligence Technology, CAS Center for Excellence in Brain Science and Intelligence Technology, Chinese Academy of Sciences, Shanghai 200031, China
| | - Bin Min
- Lingang Laboratory, Shanghai 200031, China.
| | - Liping Wang
- Institute of Neuroscience, Key Laboratory of Brain Cognition and Brain-Inspired Intelligence Technology, CAS Center for Excellence in Brain Science and Intelligence Technology, Chinese Academy of Sciences, Shanghai 200031, China.
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5
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Liu Y, Jia H, Sun H, Jia S, Yang Z, Li A, Jiang A, Naya Y, Yang C, Xue S, Li X, Chen B, Zhu J, Zhou C, Li M, Duan X. A high-density 1,024-channel probe for brain-wide recordings in non-human primates. Nat Neurosci 2024; 27:1620-1631. [PMID: 38914829 DOI: 10.1038/s41593-024-01692-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/24/2023] [Accepted: 05/23/2024] [Indexed: 06/26/2024]
Abstract
Large-scale neural population recordings with single-cell resolution across the primate brain remain challenging. Here we introduce the Neuroscroll probe that isolates single neuronal activities simultaneously from 1,024 densely spaced channels that are flexibly distributed across the shank of the probe. The Neuroscroll probe length is easily tunable for individual probes from 10 mm to 90 mm, covering the brain size of non-human primates and humans, and the probes remain intact and functional after repeated bending deformations. The Neuroscroll probes provided reliable recordings from large neural populations with high chronic stability up to 105 weeks in rats. Recording with each Neuroscroll probe yielded hundreds of well-isolated single units simultaneously from multiple brain regions distributed across the entire depth of the rhesus macaque brain. With the thousand simultaneously recorded channels, unprecedented probe length, excellent mechanical stability and flexible recording site distribution, the Neuroscroll probes enable a wide range of new experimental paradigms in system neuroscience studies with great versatility.
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Affiliation(s)
- Yang Liu
- Department of Biomedical Engineering, College of Future Technology, Peking University, Beijing, China
| | - Huilin Jia
- Department of Biomedical Engineering, College of Future Technology, Peking University, Beijing, China
| | - Hongji Sun
- Department of Biomedical Engineering, College of Future Technology, Peking University, Beijing, China
| | - Shengyi Jia
- Department of Biomedical Engineering, College of Future Technology, Peking University, Beijing, China
| | - Ziqian Yang
- Department of Biomedical Engineering, College of Future Technology, Peking University, Beijing, China
- Academy for Advanced Interdisciplinary Studies, Peking University, Beijing, China
| | - Ao Li
- School of Psychological and Cognitive Sciences, Peking University, Beijing, China
| | - Anqi Jiang
- Department of Biomedical Engineering, College of Future Technology, Peking University, Beijing, China
| | - Yuji Naya
- School of Psychological and Cognitive Sciences, Peking University, Beijing, China
- PKU-IDG/McGovern Institute for Brain Research, Beijing Key Laboratory of Behavioral and Mental Health, Peking University, Beijing, China
| | - Cen Yang
- School of Psychological and Cognitive Sciences, Peking University, Beijing, China
| | - Shengyuan Xue
- School of Psychological and Cognitive Sciences, Peking University, Beijing, China
| | - Xiaojian Li
- CAS Key Laboratory of Brain Connectome and Manipulation, Brain Cognition and Brain Disease Institute (BCBDI), Shenzhen Institute of Advanced Technology, Shenzhen-Hong Kong Institute of Brain Science-Shenzhen Fundamental Research Institutions, Shenzhen, China
| | - Bingyan Chen
- CAS Key Laboratory of Brain Connectome and Manipulation, Brain Cognition and Brain Disease Institute (BCBDI), Shenzhen Institute of Advanced Technology, Shenzhen-Hong Kong Institute of Brain Science-Shenzhen Fundamental Research Institutions, Shenzhen, China
| | - Jingjun Zhu
- Department of Biomedical Engineering, College of Future Technology, Peking University, Beijing, China
- National Biomedical Imaging Centre, Peking University, Beijing, China
| | - Chenghao Zhou
- Department of Biomedical Engineering, College of Future Technology, Peking University, Beijing, China
- Academy for Advanced Interdisciplinary Studies, Peking University, Beijing, China
| | - Minning Li
- Department of Biomedical Engineering, College of Future Technology, Peking University, Beijing, China
- Academy for Advanced Interdisciplinary Studies, Peking University, Beijing, China
| | - Xiaojie Duan
- Department of Biomedical Engineering, College of Future Technology, Peking University, Beijing, China.
- Academy for Advanced Interdisciplinary Studies, Peking University, Beijing, China.
- National Biomedical Imaging Centre, Peking University, Beijing, China.
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Stoll FM, Rudebeck PH. Preferences reveal dissociable encoding across prefrontal-limbic circuits. Neuron 2024; 112:2241-2256.e8. [PMID: 38640933 PMCID: PMC11223984 DOI: 10.1016/j.neuron.2024.03.020] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/13/2023] [Revised: 12/04/2023] [Accepted: 03/19/2024] [Indexed: 04/21/2024]
Abstract
Individual preferences for the flavor of different foods and fluids exert a strong influence on behavior. Most current theories posit that preferences are integrated with other state variables in the orbitofrontal cortex (OFC), which is thought to derive the relative subjective value of available options to guide choice behavior. Here, we report that instead of a single integrated valuation system in the OFC, another complementary one is centered in the ventrolateral prefrontal cortex (vlPFC) in macaques. Specifically, we found that the OFC and vlPFC preferentially represent outcome flavor and outcome probability, respectively, and that preferences are separately integrated into value representations in these areas. In addition, the vlPFC, but not the OFC, represented the probability of receiving the available outcome flavors separately, with the difference between these representations reflecting the degree of preference for each flavor. Thus, both the vlPFC and OFC exhibit dissociable but complementary representations of subjective value, both of which are necessary for decision-making.
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Affiliation(s)
- Frederic M Stoll
- Nash Family Department of Neuroscience, Lipschultz Center for Cognitive Neuroscience and Friedman Brain Institute, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA.
| | - Peter H Rudebeck
- Nash Family Department of Neuroscience, Lipschultz Center for Cognitive Neuroscience and Friedman Brain Institute, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA.
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7
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Cisek P, Green AM. Toward a neuroscience of natural behavior. Curr Opin Neurobiol 2024; 86:102859. [PMID: 38583263 DOI: 10.1016/j.conb.2024.102859] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/24/2023] [Accepted: 03/04/2024] [Indexed: 04/09/2024]
Abstract
One of the most exciting new developments in systems neuroscience is the progress being made toward neurophysiological experiments that move beyond simplified laboratory settings and address the richness of natural behavior. This is enabled by technological advances such as wireless recording in freely moving animals, automated quantification of behavior, and new methods for analyzing large data sets. Beyond new empirical methods and data, however, there is also a need for new theories and concepts to interpret that data. Such theories need to address the particular challenges of natural behavior, which often differ significantly from the scenarios studied in traditional laboratory settings. Here, we discuss some strategies for developing such novel theories and concepts and some example hypotheses being proposed.
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Affiliation(s)
- Paul Cisek
- Department of Neuroscience, University of Montréal, Montréal, Québec, Canada.
| | - Andrea M Green
- Department of Neuroscience, University of Montréal, Montréal, Québec, Canada
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8
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Teichert T, Papp L, Vincze F, Burns N, Goodell B, Ahmed Z, Holmes A, Gray CM, Chamanzar M, Gurnsey K. Volumetric mesoscopic electrophysiology: a new imaging modality for the non-human primate. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2024:2024.05.13.593946. [PMID: 38798595 PMCID: PMC11118515 DOI: 10.1101/2024.05.13.593946] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/29/2024]
Abstract
The primate brain is a densely interconnected organ whose function is best understood by recording from the entire structure in parallel, rather than parts of it in sequence. However, available methods either have limited temporal resolution (functional magnetic resonance imaging), limited spatial resolution (macroscopic electroencephalography), or a limited field of view (microscopic electrophysiology). To address this need, we developed a volumetric, mesoscopic recording approach ( MePhys ) by tessellating the volume of a monkey hemisphere with 992 electrode contacts that were distributed across 62 chronically implanted multi-electrode shafts. We showcase the scientific promise of MePhys by describing the functional interactions of local field potentials between the more than 300,000 simultaneously recorded pairs of electrodes. We find that a subanesthetic dose of ketamine -believed to mimic certain aspects of psychosis- can create a pronounced state of functional disconnection and prevent the formation of stable large-scale intrinsic states. We conclude that MePhys provides a new and fundamentally distinct window into brain function whose unique profile of strengths and weaknesses complements existing approaches in synergistic ways.
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9
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Dotson NM, Davis ZW, Jendritza P, Reynolds JH. Acute Neuropixels Recordings in the Marmoset Monkey. eNeuro 2024; 11:ENEURO.0544-23.2024. [PMID: 38658139 PMCID: PMC11129777 DOI: 10.1523/eneuro.0544-23.2024] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/21/2023] [Revised: 04/03/2024] [Accepted: 04/10/2024] [Indexed: 04/26/2024] Open
Abstract
High-density linear probes, such as Neuropixels, provide an unprecedented opportunity to understand how neural populations within specific laminar compartments contribute to behavior. Marmoset monkeys, unlike macaque monkeys, have a lissencephalic (smooth) cortex that enables recording perpendicular to the cortical surface, thus making them an ideal animal model for studying laminar computations. Here we present a method for acute Neuropixels recordings in the common marmoset (Callithrix jacchus). The approach replaces the native dura with an artificial silicon-based dura that grants visual access to the cortical surface, which is helpful in avoiding blood vessels, ensures perpendicular penetrations, and could be used in conjunction with optical imaging or optogenetic techniques. The chamber housing the artificial dura is simple to maintain with minimal risk of infection and could be combined with semichronic microdrives and wireless recording hardware. This technique enables repeated acute penetrations over a period of several months. With occasional removal of tissue growth on the pial surface, recordings can be performed for a year or more. The approach is fully compatible with Neuropixels probes, enabling the recording of hundreds of single neurons distributed throughout the cortical column.
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Affiliation(s)
- Nicholas M Dotson
- The Salk Institute for Biological Studies, La Jolla, California 92037
| | - Zachary W Davis
- The Salk Institute for Biological Studies, La Jolla, California 92037
- Department of Ophthalmology and Visual Sciences, John Moran Eye Center, University of Utah, Salt Lake City, Utah 84132
| | - Patrick Jendritza
- The Salk Institute for Biological Studies, La Jolla, California 92037
| | - John H Reynolds
- The Salk Institute for Biological Studies, La Jolla, California 92037
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Hoffman SJ, Dotson NM, Lima V, Gray CM. The Primate Cortical LFP Exhibits Multiple Spectral and Temporal Gradients and Widespread Task-Dependence During Visual Short-Term Memory. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2024:2024.01.29.577843. [PMID: 38352585 PMCID: PMC10862751 DOI: 10.1101/2024.01.29.577843] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 02/22/2024]
Abstract
Although cognitive functions are hypothesized to be mediated by synchronous neuronal interactions in multiple frequency bands among widely distributed cortical areas, we still lack a basic understanding of the distribution and task dependence of oscillatory activity across the cortical map. Here, we ask how the spectral and temporal properties of the local field potential (LFP) vary across the primate cerebral cortex, and how they are modulated during visual short-term memory. We measured the LFP from 55 cortical areas in two macaque monkeys while they performed a visual delayed match to sample task. Analysis of peak frequencies in the LFP power spectra reveals multiple discrete frequency bands between 3-80 Hz that differ between the two monkeys. The LFP power in each band, as well as the Sample Entropy, a measure of signal complexity, display distinct spatial gradients across the cortex, some of which correlate with reported spine counts in layer 3 pyramidal neurons. Cortical areas can be robustly decoded using a small number of spectral and temporal parameters, and significant task dependent increases and decreases in spectral power occur in all cortical areas. These findings reveal pronounced, widespread and spatially organized gradients in the spectral and temporal activity of cortical areas. Task-dependent changes in cortical activity are globally distributed, even for a simple cognitive task.
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Affiliation(s)
- Steven J Hoffman
- Department of Cell Biology and Neuroscience, Montana State University, Bozeman, MT 59717, USA
- Current address: Department of Biomedical Engineering, University of Minnesota, Minneapolis, MN 55455, USA
| | - Nicholas M Dotson
- Department of Cell Biology and Neuroscience, Montana State University, Bozeman, MT 59717, USA
- Current address: Salk Institute for Biological Studies, La Jolla, CA 92037, USA
| | - Vinicius Lima
- Aix Marseille Université, INSERM, Systems Neuroscience Institute, Marseille, France
| | - Charles M Gray
- Department of Cell Biology and Neuroscience, Montana State University, Bozeman, MT 59717, USA
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11
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Dotson NM, Davis ZW, Jendritza P, Reynolds JH. Acute Neuropixels recordings in the marmoset monkey. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2023:2023.12.14.571771. [PMID: 38168386 PMCID: PMC10760116 DOI: 10.1101/2023.12.14.571771] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/05/2024]
Abstract
High-density linear probes, like Neuropixels, provide an unprecedented opportunity to understand how neural populations within specific laminar compartments contribute to behavior. Marmoset monkeys, unlike macaque monkeys, have a lissencephalic (smooth) cortex that enables recording perpendicular to the cortical surface, thus making them an ideal animal model for studying laminar computations. Here we present a method for acute Neuropixels recordings in the common marmoset (Callithrix jacchus). The approach replaces the native dura with an artificial silicon-based dura that grants visual access to the cortical surface, which is helpful in avoiding blood vessels, ensures perpendicular penetrations, and could be used in conjunction with optical imaging or optogenetic techniques. The chamber housing the artificial dura is simple to maintain with minimal risk of infection and could be combined with semi-chronic microdrives and wireless recording hardware. This technique enables repeated acute penetrations over a period of several months. With occasional removal of tissue growth on the pial surface, recordings can be performed for a year or more. The approach is fully compatible with Neuropixels probes, enabling the recording of hundreds of single neurons distributed throughout the cortical column.
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Affiliation(s)
| | - Zachary W Davis
- The Salk Institute for Biological Studies, La Jolla, California
- Department of Ophthalmology and Vision Science, University of Utah, Salt Lake City, Utah
| | | | - John H Reynolds
- The Salk Institute for Biological Studies, La Jolla, California
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12
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Shan L, Yuan L, Zhang B, Ma J, Xu X, Gu F, Jiang Y, Dai J. Neural Integration of Audiovisual Sensory Inputs in Macaque Amygdala and Adjacent Regions. Neurosci Bull 2023; 39:1749-1761. [PMID: 36920645 PMCID: PMC10661144 DOI: 10.1007/s12264-023-01043-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/16/2023] [Accepted: 02/13/2023] [Indexed: 03/16/2023] Open
Abstract
Integrating multisensory inputs to generate accurate perception and guide behavior is among the most critical functions of the brain. Subcortical regions such as the amygdala are involved in sensory processing including vision and audition, yet their roles in multisensory integration remain unclear. In this study, we systematically investigated the function of neurons in the amygdala and adjacent regions in integrating audiovisual sensory inputs using a semi-chronic multi-electrode array and multiple combinations of audiovisual stimuli. From a sample of 332 neurons, we showed the diverse response patterns to audiovisual stimuli and the neural characteristics of bimodal over unimodal modulation, which could be classified into four types with differentiated regional origins. Using the hierarchical clustering method, neurons were further clustered into five groups and associated with different integrating functions and sub-regions. Finally, regions distinguishing congruent and incongruent bimodal sensory inputs were identified. Overall, visual processing dominates audiovisual integration in the amygdala and adjacent regions. Our findings shed new light on the neural mechanisms of multisensory integration in the primate brain.
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Affiliation(s)
- Liang Shan
- CAS Key Laboratory of Brain Connectome and Manipulation, the Brain Cognition and Brain Disease Institute (BCBDI), Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences, Shenzhen, 518055, China
- Shenzhen-Hong Kong Institute of Brain Science-Shenzhen Fundamental Research Institutions, Shenzhen, 518055, China
| | - Liu Yuan
- CAS Key Laboratory of Brain Connectome and Manipulation, the Brain Cognition and Brain Disease Institute (BCBDI), Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences, Shenzhen, 518055, China
- University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Bo Zhang
- CAS Key Laboratory of Brain Connectome and Manipulation, the Brain Cognition and Brain Disease Institute (BCBDI), Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences, Shenzhen, 518055, China
- Key Laboratory of Brain Science, Zunyi Medical University, Zunyi, 563000, China
| | - Jian Ma
- CAS Key Laboratory of Brain Connectome and Manipulation, the Brain Cognition and Brain Disease Institute (BCBDI), Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences, Shenzhen, 518055, China
| | - Xiao Xu
- CAS Key Laboratory of Brain Connectome and Manipulation, the Brain Cognition and Brain Disease Institute (BCBDI), Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences, Shenzhen, 518055, China
| | - Fei Gu
- University of Chinese Academy of Sciences, Beijing, 100049, China
- State Key Laboratory of Brain and Cognitive Science, CAS Center for Excellence in Brain Science and Intelligence Technology, Institute of Psychology, Chinese Academy of Sciences, Beijing, 100101, China
| | - Yi Jiang
- University of Chinese Academy of Sciences, Beijing, 100049, China.
- State Key Laboratory of Brain and Cognitive Science, CAS Center for Excellence in Brain Science and Intelligence Technology, Institute of Psychology, Chinese Academy of Sciences, Beijing, 100101, China.
- Chinese Institute for Brain Research, Beijing, 102206, China.
| | - Ji Dai
- CAS Key Laboratory of Brain Connectome and Manipulation, the Brain Cognition and Brain Disease Institute (BCBDI), Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences, Shenzhen, 518055, China.
- Shenzhen-Hong Kong Institute of Brain Science-Shenzhen Fundamental Research Institutions, Shenzhen, 518055, China.
- University of Chinese Academy of Sciences, Beijing, 100049, China.
- Shenzhen Technological Research Center for Primate Translational Medicine, Shenzhen, 518055, China.
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13
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Zippi EL, Shvartsman GF, Vendrell-Llopis N, Wallis JD, Carmena JM. Distinct neural representations during a brain-machine interface and manual reaching task in motor cortex, prefrontal cortex, and striatum. Sci Rep 2023; 13:17810. [PMID: 37857827 PMCID: PMC10587077 DOI: 10.1038/s41598-023-44405-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/31/2023] [Accepted: 10/07/2023] [Indexed: 10/21/2023] Open
Abstract
Although brain-machine interfaces (BMIs) are directly controlled by the modulation of a select local population of neurons, distributed networks consisting of cortical and subcortical areas have been implicated in learning and maintaining control. Previous work in rodents has demonstrated the involvement of the striatum in BMI learning. However, the prefrontal cortex has been largely ignored when studying motor BMI control despite its role in action planning, action selection, and learning abstract tasks. Here, we compare local field potentials simultaneously recorded from primary motor cortex (M1), dorsolateral prefrontal cortex (DLPFC), and the caudate nucleus of the striatum (Cd) while nonhuman primates perform a two-dimensional, self-initiated, center-out task under BMI control and manual control. Our results demonstrate the presence of distinct neural representations for BMI and manual control in M1, DLPFC, and Cd. We find that neural activity from DLPFC and M1 best distinguishes control types at the go cue and target acquisition, respectively, while M1 best predicts target-direction at both task events. We also find effective connectivity from DLPFC → M1 throughout both control types and Cd → M1 during BMI control. These results suggest distributed network activity between M1, DLPFC, and Cd during BMI control that is similar yet distinct from manual control.
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Affiliation(s)
- Ellen L Zippi
- Helen Wills Neuroscience Institute, University of California, Berkeley, Berkeley, CA, USA
| | - Gabrielle F Shvartsman
- Department of Electrical Engineering and Computer Science, University of California, Berkeley, Berkeley, CA, USA
| | - Nuria Vendrell-Llopis
- Helen Wills Neuroscience Institute, University of California, Berkeley, Berkeley, CA, USA
- Department of Electrical Engineering and Computer Science, University of California, Berkeley, Berkeley, CA, USA
| | - Joni D Wallis
- Helen Wills Neuroscience Institute, University of California, Berkeley, Berkeley, CA, USA
- Department of Psychology, University of California, Berkeley, Berkeley, CA, USA
| | - Jose M Carmena
- Helen Wills Neuroscience Institute, University of California, Berkeley, Berkeley, CA, USA.
- Department of Electrical Engineering and Computer Science, University of California, Berkeley, Berkeley, CA, USA.
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14
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Segraves MA. Using Natural Scenes to Enhance our Understanding of the Cerebral Cortex's Role in Visual Search. Annu Rev Vis Sci 2023; 9:435-454. [PMID: 37164028 DOI: 10.1146/annurev-vision-100720-124033] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/12/2023]
Abstract
Using natural scenes is an approach to studying the visual and eye movement systems approximating how these systems function in everyday life. This review examines the results from behavioral and neurophysiological studies using natural scene viewing in humans and monkeys. The use of natural scenes for the study of cerebral cortical activity is relatively new and presents challenges for data analysis. Methods and results from the use of natural scenes for the study of the visual and eye movement cortex are presented, with emphasis on new insights that this method provides enhancing what is known about these cortical regions from the use of conventional methods.
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Affiliation(s)
- Mark A Segraves
- Department of Neurobiology, Northwestern University, Evanston, Illinois, USA;
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15
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Mahmoudian B, Dalal H, Lau J, Corrigan B, Abbas M, Barker K, Rankin A, Chen ECS, Peters T, Martinez-Trujillo JC. A method for chronic and semi-chronic microelectrode array implantation in deep brain structures using image guided neuronavigation. J Neurosci Methods 2023; 397:109948. [PMID: 37572883 DOI: 10.1016/j.jneumeth.2023.109948] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/16/2023] [Revised: 07/17/2023] [Accepted: 08/09/2023] [Indexed: 08/14/2023]
Abstract
BACKGROUND Accurate targeting of brain structures for in-vivo electrophysiological recordings is essential for basic as well as clinical neuroscience research. Although methodologies for precise targeting and recording from the cortical surface are abundant, such protocols are scarce for deep brain structures. NEW METHOD We have incorporated stable fiducial markers within a custom cranial cap for improved image-guided neuronavigation targeting of subcortical structures in macaque monkeys. Anchor bolt chambers allowed for a minimally invasive entrance into the brain for chronic recordings. A 3D-printed microdrive allowed for semi-chronic applications. RESULTS We achieved an average Euclidean targeting error of 1.6 mm and a radial error of 1.2 mm over three implantations in two animals. Chronic and semi-chronic implantations allowed for recording of extracellular neuronal activity, with single-neuron activity examples shown from one macaque monkey. COMPARISON WITH EXISTING METHOD(S) Traditional stereotactic methods ignore individual anatomical variability. Our targeting approach allows for a flexible, subject-specific surgical plan with targeting errors lower than what is reported in humans, and equal to or lower than animal models using similar methods. Utilizing an anchor bolt as a chamber reduced the craniotomy size needed for electrode implantation, compared to conventional large access chambers which are prone to infection. Installation of an in-house, 3D-printed, screw-to-mount mechanical microdrive is in contrast to existing semi-chronic methods requiring fabrication, assembly, and installation of complex parts. CONCLUSIONS Leveraging commercially available tools for implantation, our protocol decreases the risk of infection from open craniotomies, and improves the accuracy of chronic electrode implantations targeting deep brain structures in large animal models.
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Affiliation(s)
- Borna Mahmoudian
- Department of Physiology and Pharmacology, Schulich School of Medicine and Dentistry, Robarts Research Institute and Brain and Mind Institute, University of Western Ontario, 1151 Richmond St. N., London, ON N6A 5B7, Canada
| | - Hitarth Dalal
- Department of Physiology and Pharmacology, Schulich School of Medicine and Dentistry, Robarts Research Institute and Brain and Mind Institute, University of Western Ontario, 1151 Richmond St. N., London, ON N6A 5B7, Canada
| | - Jonathan Lau
- Department of Clinical Neurological Sciences, Division of Neurosurgery, London Health Sciences Centre, University of Western Ontario, 1151 Richmond St. N., London, ON N6A 5B7, Canada; School of Biomedical Engineering, University of Western Ontario, 1151 Richmond St. N., London, ON N6A 5B7, Canada; Imaging Research Laboratories, Robarts Research Institute, University of Western Ontario, 1151 Richmond St. N., London, ON N6A 5B7, Canada
| | - Benjamin Corrigan
- Department of Physiology and Pharmacology, Schulich School of Medicine and Dentistry, Robarts Research Institute and Brain and Mind Institute, University of Western Ontario, 1151 Richmond St. N., London, ON N6A 5B7, Canada
| | - Mohamad Abbas
- Department of Physiology and Pharmacology, Schulich School of Medicine and Dentistry, Robarts Research Institute and Brain and Mind Institute, University of Western Ontario, 1151 Richmond St. N., London, ON N6A 5B7, Canada; Department of Clinical Neurological Sciences, Division of Neurosurgery, London Health Sciences Centre, University of Western Ontario, 1151 Richmond St. N., London, ON N6A 5B7, Canada
| | | | - Adam Rankin
- Imaging Research Laboratories, Robarts Research Institute, University of Western Ontario, 1151 Richmond St. N., London, ON N6A 5B7, Canada
| | - Elvis C S Chen
- School of Biomedical Engineering, University of Western Ontario, 1151 Richmond St. N., London, ON N6A 5B7, Canada; Imaging Research Laboratories, Robarts Research Institute, University of Western Ontario, 1151 Richmond St. N., London, ON N6A 5B7, Canada; Department of Medical Biophysics, University of Western Ontario, 1151 Richmond St. N., London, ON N6A 5B7, Canada; Lawson Health Research Institute, 750 Base Line Road East Suite 300, London, ON N6C2R5, Canada; Department of Electrical and Computer Engineering, Thompson Engineering Building, University of Western Ontario, London, ON, N6A 5B9, Canada
| | - Terry Peters
- Imaging Research Laboratories, Robarts Research Institute, University of Western Ontario, 1151 Richmond St. N., London, ON N6A 5B7, Canada; Center for Functional and Metabolic Mapping, Robarts Research Institute, Department of Medical Biophysics and Brain and Mind Institute, University of Western Ontario, 1151 Richmond St. N., London, ON N6A 5B7, Canada
| | - Julio C Martinez-Trujillo
- Department of Physiology and Pharmacology, Schulich School of Medicine and Dentistry, Robarts Research Institute and Brain and Mind Institute, University of Western Ontario, 1151 Richmond St. N., London, ON N6A 5B7, Canada; Lawson Health Research Institute, 750 Base Line Road East Suite 300, London, ON N6C2R5, Canada.
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16
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Zippi EL, Shvartsman GF, Vendrell-Llopis N, Wallis JD, Carmena JM. Distinct neural representations during a brain-machine interface and manual reaching task in motor cortex, prefrontal cortex, and striatum. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2023:2023.05.31.542532. [PMID: 37398143 PMCID: PMC10312492 DOI: 10.1101/2023.05.31.542532] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 07/04/2023]
Abstract
Although brain-machine interfaces (BMIs) are directly controlled by the modulation of a select local population of neurons, distributed networks consisting of cortical and subcortical areas have been implicated in learning and maintaining control. Previous work in rodent BMI has demonstrated the involvement of the striatum in BMI learning. However, the prefrontal cortex has been largely ignored when studying motor BMI control despite its role in action planning, action selection, and learning abstract tasks. Here, we compare local field potentials simultaneously recorded from the primary motor cortex (M1), dorsolateral prefrontal cortex (DLPFC), and the caudate nucleus of the striatum (Cd) while nonhuman primates perform a two-dimensional, self-initiated, center-out task under BMI control and manual control. Our results demonstrate the presence of distinct neural representations for BMI and manual control in M1, DLPFC, and Cd. We find that neural activity from DLPFC and M1 best distinguish between control types at the go cue and target acquisition, respectively. We also found effective connectivity from DLPFC→M1 throughout trials across both control types and Cd→M1 during BMI control. These results suggest distributed network activity between M1, DLPFC, and Cd during BMI control that is similar yet distinct from manual control.
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Affiliation(s)
- Ellen L. Zippi
- Helen Wills Neuroscience Institute, University of California, Berkeley, Berkeley, CA
| | - Gabrielle F. Shvartsman
- Department of Electrical Engineering and Computer Science, University of California, Berkeley, Berkeley, CA
| | - Nuria Vendrell-Llopis
- Helen Wills Neuroscience Institute, University of California, Berkeley, Berkeley, CA
- Department of Electrical Engineering and Computer Science, University of California, Berkeley, Berkeley, CA
| | - Joni D. Wallis
- Helen Wills Neuroscience Institute, University of California, Berkeley, Berkeley, CA
- Department of Psychology, University of California, Berkeley, Berkeley, CA
| | - Jose M. Carmena
- Helen Wills Neuroscience Institute, University of California, Berkeley, Berkeley, CA
- Department of Electrical Engineering and Computer Science, University of California, Berkeley, Berkeley, CA
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17
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Stoll FM, Rudebeck PH. Preferences reveal separable valuation systems in prefrontal-limbic circuits. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2023:2023.05.10.540239. [PMID: 37214895 PMCID: PMC10197711 DOI: 10.1101/2023.05.10.540239] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/24/2023]
Abstract
Individual preferences for the flavor of different foods and fluids exert a strong influence on behavior. Most current theories posit that preferences are integrated with other state variables in orbitofrontal cortex (OFC), which is thought to derive the relative subjective value of available options to drive choice behavior. Here we report that instead of a single integrated valuation system in OFC, another separate one is centered in ventrolateral prefrontal cortex (vlPFC) in macaque monkeys. Specifically, we found that OFC and vlPFC preferentially represent outcome flavor and outcome probability, respectively, and that preferences are separately integrated into these two aspects of subjective valuation. In addition, vlPFC, but not OFC, represented the outcome probability for the two options separately, with the difference between these representations reflecting the degree of preference. Thus, there are at least two separable valuation systems that work in concert to guide choices and that both are biased by preferences.
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Affiliation(s)
- Frederic M Stoll
- Nash Family Department of Neuroscience and Friedman Brain Institute, Icahn School of Medicine at Mount Sinai, One Gustave L. Levy Place, New York, NY, 10029, USA
| | - Peter H Rudebeck
- Nash Family Department of Neuroscience and Friedman Brain Institute, Icahn School of Medicine at Mount Sinai, One Gustave L. Levy Place, New York, NY, 10029, USA
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18
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Trautmann EM, Hesse JK, Stine GM, Xia R, Zhu S, O'Shea DJ, Karsh B, Colonell J, Lanfranchi FF, Vyas S, Zimnik A, Steinmann NA, Wagenaar DA, Andrei A, Lopez CM, O'Callaghan J, Putzeys J, Raducanu BC, Welkenhuysen M, Churchland M, Moore T, Shadlen M, Shenoy K, Tsao D, Dutta B, Harris T. Large-scale high-density brain-wide neural recording in nonhuman primates. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2023:2023.02.01.526664. [PMID: 37205406 PMCID: PMC10187172 DOI: 10.1101/2023.02.01.526664] [Citation(s) in RCA: 14] [Impact Index Per Article: 14.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/21/2023]
Abstract
High-density, integrated silicon electrodes have begun to transform systems neuroscience, by enabling large-scale neural population recordings with single cell resolution. Existing technologies, however, have provided limited functionality in nonhuman primate species such as macaques, which offer close models of human cognition and behavior. Here, we report the design, fabrication, and performance of Neuropixels 1.0-NHP, a high channel count linear electrode array designed to enable large-scale simultaneous recording in superficial and deep structures within the macaque or other large animal brain. These devices were fabricated in two versions: 4416 electrodes along a 45 mm shank, and 2496 along a 25 mm shank. For both versions, users can programmatically select 384 channels, enabling simultaneous multi-area recording with a single probe. We demonstrate recording from over 3000 single neurons within a session, and simultaneous recordings from over 1000 neurons using multiple probes. This technology represents a significant increase in recording access and scalability relative to existing technologies, and enables new classes of experiments involving fine-grained electrophysiological characterization of brain areas, functional connectivity between cells, and simultaneous brain-wide recording at scale.
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19
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Merken L, Schelles M, Ceyssens F, Kraft M, Janssen P. Thin flexible arrays for long-term multi-electrode recordings in macaque primary visual cortex. J Neural Eng 2022; 19. [PMID: 36215972 DOI: 10.1088/1741-2552/ac98e2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/17/2022] [Accepted: 10/10/2022] [Indexed: 01/11/2023]
Abstract
Objective.Basic, translational and clinical neuroscience are increasingly focusing on large-scale invasive recordings of neuronal activity. However, in large animals such as nonhuman primates and humans-in which the larger brain size with sulci and gyri imposes additional challenges compared to rodents, there is a huge unmet need to record from hundreds of neurons simultaneously anywhere in the brain for long periods of time. Here, we tested the electrical and mechanical properties of thin, flexible multi-electrode arrays (MEAs) inserted into the primary visual cortex of two macaque monkeys, and assessed their magnetic resonance imaging (MRI) compatibility and their capacity to record extracellular activity over a period of 1 year.Approach.To allow insertion of the floating arrays into the visual cortex, the 20 by 100µm2shafts were temporarily strengthened by means of a resorbable poly(lactic-co-glycolic acid) coating.Main results. After manual insertion of the arrays, theex vivoandin vivoMRI compatibility of the arrays proved to be excellent. We recorded clear single-unit activity from up to 50% of the electrodes, and multi-unit activity (MUA) on 60%-100% of the electrodes, which allowed detailed measurements of the receptive fields and the orientation selectivity of the neurons. Even 1 year after insertion, we obtained significant MUA responses on 70%-100% of the electrodes, while the receptive fields remained remarkably stable over the entire recording period.Significance.Thus, the thin and flexible MEAs we tested offer several crucial advantages compared to existing arrays, most notably in terms of brain tissue compliance, scalability, and brain coverage. Future brain-machine interface applications in humans may strongly benefit from this new generation of chronically implanted MEAs.
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Affiliation(s)
- Lara Merken
- Laboratory for Neuro- and Psychophysiology, KU Leuven, Leuven 3000, Belgium.,Leuven Brain Institute, KU Leuven, Leuven 3000, Belgium
| | - Maarten Schelles
- Micro- and Nanosystems (MNS), Electrical Engineering Department (ESAT), KU Leuven, Leuven 3000, Belgium.,ReVision Implant NV, Haasrode 3053, Belgium
| | | | - Michael Kraft
- Micro- and Nanosystems (MNS), Electrical Engineering Department (ESAT), KU Leuven, Leuven 3000, Belgium.,Leuven Institute for Micro- and Nanotechnology (LIMNI), Leuven 3000, Belgium
| | - Peter Janssen
- Laboratory for Neuro- and Psychophysiology, KU Leuven, Leuven 3000, Belgium.,Leuven Brain Institute, KU Leuven, Leuven 3000, Belgium
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20
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Smith RD, Kolb I, Tanaka S, Lee AK, Harris TD, Barbic M. Robotic multi-probe single-actuator inchworm neural microdrive. eLife 2022; 11:71876. [PMID: 36355598 PMCID: PMC9651949 DOI: 10.7554/elife.71876] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/02/2021] [Accepted: 10/13/2022] [Indexed: 11/11/2022] Open
Abstract
A wide range of techniques in neuroscience involve placing individual probes at precise locations in the brain. However, large-scale measurement and manipulation of the brain using such methods have been severely limited by the inability to miniaturize systems for probe positioning. Here, we present a fundamentally new, remote-controlled micropositioning approach composed of novel phase-change material-filled resistive heater micro-grippers arranged in an inchworm motor configuration. The microscopic dimensions, stability, gentle gripping action, individual electronic control, and high packing density of the grippers allow micrometer-precision independent positioning of many arbitrarily shaped probes using a single piezo actuator. This multi-probe single-actuator design significantly reduces the size and weight and allows for potential automation of microdrives. We demonstrate accurate placement of multiple electrodes into the rat hippocampus in vivo in acute and chronic preparations. Our robotic microdrive technology should therefore enable the scaling up of many types of multi-probe applications in neuroscience and other fields.
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Affiliation(s)
| | - Ilya Kolb
- Janelia Research Campus, Howard Hughes Medical Institute
| | | | - Albert K Lee
- Janelia Research Campus, Howard Hughes Medical Institute
| | | | - Mladen Barbic
- Janelia Research Campus, Howard Hughes Medical Institute
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21
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Wang XJ. Theory of the Multiregional Neocortex: Large-Scale Neural Dynamics and Distributed Cognition. Annu Rev Neurosci 2022; 45:533-560. [PMID: 35803587 DOI: 10.1146/annurev-neuro-110920-035434] [Citation(s) in RCA: 19] [Impact Index Per Article: 9.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]
Abstract
The neocortex is a complex neurobiological system with many interacting regions. How these regions work together to subserve flexible behavior and cognition has become increasingly amenable to rigorous research. Here, I review recent experimental and theoretical work on the modus operandi of a multiregional cortex. These studies revealed several general principles for the neocortical interareal connectivity, low-dimensional macroscopic gradients of biological properties across cortical areas, and a hierarchy of timescales for information processing. Theoretical work suggests testable predictions regarding differential excitation and inhibition along feedforward and feedback pathways in the cortical hierarchy. Furthermore, modeling of distributed working memory and simple decision-making has given rise to a novel mathematical concept, dubbed bifurcation in space, that potentially explains how different cortical areas, with a canonical circuit organization but gradients of biological heterogeneities, are able to subserve their respective (e.g., sensory coding versus executive control) functions in a modularly organized brain.
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Affiliation(s)
- Xiao-Jing Wang
- Center for Neural Science, New York University, New York, NY, USA;
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22
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Earley EJ, Mastinu E, Ortiz-Catalan M. Cross-Channel Impedance Measurement for Monitoring Implanted Electrodes. ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. ANNUAL INTERNATIONAL CONFERENCE 2022; 2022:4880-4883. [PMID: 36086091 DOI: 10.1109/embc48229.2022.9871954] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/15/2023]
Abstract
Implanted electrodes, such as those used for cochlear implants, brain-computer interfaces, and prosthetic limbs, rely on particular electrical conditions for optimal operation. Measurements of electrical impedance can be a diagnostic tool to monitor implanted electrodes for changing conditions arising from glial scarring, encapsulation, and shorted or broken wires. Such measurements provide information about the electrical impedance between a single electrode and its electrical reference, but offer no insights into the overall network of impedances between electrodes. Other solutions generally rely on geometrical assumptions of the arrangement of the electrodes and may not generalize to other electrode networks. Here, we propose a linear algebra-based approach, Cross-Channel Impedance Measurement (CCIM), for measuring a network of impedances between electrodes which all share a common electrical reference. This is accomplished by measuring the voltage response from all electrodes to a known current applied between each electrode and the shared reference, and is agnostic to the number and arrangement of electrodes. The approach is validated using a simulated 8-electrode network, demonstrating direct impedance measurements between electrodes and the reference with 96.6% ±0.2% accuracy, and cross-channel impedance measurements with 93.3% ±0.6% accuracy in a typical system. Subsequent analyses on randomized systems demonstrate the sensitivity of the model to impedance range and measurement noise. Clinical Relevance- CCIM provides a system-agnostic diagnostic test for implanted electrode networks, which may aid in the longitudinal tracking of electrode performance and early identification of electronics failures.
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23
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Combrisson E, Allegra M, Basanisi R, Ince RAA, Giordano B, Bastin J, Brovelli A. Group-level inference of information-based measures for the analyses of cognitive brain networks from neurophysiological data. Neuroimage 2022; 258:119347. [PMID: 35660460 DOI: 10.1016/j.neuroimage.2022.119347] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/14/2021] [Revised: 05/24/2022] [Accepted: 05/30/2022] [Indexed: 12/30/2022] Open
Abstract
The reproducibility crisis in neuroimaging and in particular in the case of underpowered studies has introduced doubts on our ability to reproduce, replicate and generalize findings. As a response, we have seen the emergence of suggested guidelines and principles for neuroscientists known as Good Scientific Practice for conducting more reliable research. Still, every study remains almost unique in its combination of analytical and statistical approaches. While it is understandable considering the diversity of designs and brain data recording, it also represents a striking point against reproducibility. Here, we propose a non-parametric permutation-based statistical framework, primarily designed for neurophysiological data, in order to perform group-level inferences on non-negative measures of information encompassing metrics from information-theory, machine-learning or measures of distances. The framework supports both fixed- and random-effect models to adapt to inter-individuals and inter-sessions variability. Using numerical simulations, we compared the accuracy in ground-truth retrieving of both group models, such as test- and cluster-wise corrections for multiple comparisons. We then reproduced and extended existing results using both spatially uniform MEG and non-uniform intracranial neurophysiological data. We showed how the framework can be used to extract stereotypical task- and behavior-related effects across the population covering scales from the local level of brain regions, inter-areal functional connectivity to measures summarizing network properties. We also present an open-source Python toolbox called Frites1 that includes the proposed statistical pipeline using information-theoretic metrics such as single-trial functional connectivity estimations for the extraction of cognitive brain networks. Taken together, we believe that this framework deserves careful attention as its robustness and flexibility could be the starting point toward the uniformization of statistical approaches.
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Affiliation(s)
- Etienne Combrisson
- Institut de Neurosciences de la Timone, Aix Marseille Université, UMR 7289 CNRS, 13005, Marseille, France.
| | - Michele Allegra
- Institut de Neurosciences de la Timone, Aix Marseille Université, UMR 7289 CNRS, 13005, Marseille, France; Dipartimento di Fisica e Astronomia "Galileo Galilei", Università di Padova, via Marzolo 8, 35131 Padova, Italy; Padua Neuroscience Center, Università di Padova, via Orus 2, 35131 Padova, Italy
| | - Ruggero Basanisi
- Institut de Neurosciences de la Timone, Aix Marseille Université, UMR 7289 CNRS, 13005, Marseille, France
| | - Robin A A Ince
- School of Psychology and Neuroscience, University of Glasgow, Glasgow, UK
| | - Bruno Giordano
- Institut de Neurosciences de la Timone, Aix Marseille Université, UMR 7289 CNRS, 13005, Marseille, France
| | - Julien Bastin
- Univ. Grenoble Alpes, Inserm, U1216, Grenoble Institut Neurosciences, 38000 Grenoble, France
| | - Andrea Brovelli
- Institut de Neurosciences de la Timone, Aix Marseille Université, UMR 7289 CNRS, 13005, Marseille, France.
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24
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Zhang K, Bromberg-Martin ES, Sogukpinar F, Kocher K, Monosov IE. Surprise and recency in novelty detection in the primate brain. Curr Biol 2022; 32:2160-2173.e6. [DOI: 10.1016/j.cub.2022.03.064] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/10/2022] [Revised: 02/28/2022] [Accepted: 03/24/2022] [Indexed: 11/16/2022]
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25
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Conklin BD. Spectral characteristics of visual working memory in the monkey frontoparietal network. PSYCHOLOGY OF LEARNING AND MOTIVATION 2022. [DOI: 10.1016/bs.plm.2022.03.003] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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26
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A primate temporal cortex-zona incerta pathway for novelty seeking. Nat Neurosci 2022; 25:50-60. [PMID: 34903880 DOI: 10.1038/s41593-021-00950-1] [Citation(s) in RCA: 31] [Impact Index Per Article: 15.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/20/2021] [Accepted: 09/28/2021] [Indexed: 11/08/2022]
Abstract
Primates interact with the world by exploring visual objects; they seek opportunities to view novel objects even when these have no extrinsic reward value. How the brain controls this novelty seeking is unknown. Here we show that novelty seeking in monkeys is regulated by the zona incerta (ZI). As monkeys made eye movements to familiar objects to trigger an opportunity to view novel objects, many ZI neurons were preferentially activated by predictions of novel objects before the gaze shift. Low-intensity ZI stimulation facilitated gaze shifts, whereas ZI inactivation reduced novelty seeking. ZI-dependent novelty seeking was not regulated by neurons in the lateral habenula or by many dopamine neurons in the substantia nigra, traditionally associated with reward seeking. But the anterior ventral medial temporal cortex, an area important for object vision and memory, was a prominent source of novelty predictions. These data uncover a functional pathway in the primate brain that regulates novelty seeking.
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27
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Mao D, Avila E, Caziot B, Laurens J, Dickman JD, Angelaki DE. Spatial modulation of hippocampal activity in freely moving macaques. Neuron 2021; 109:3521-3534.e6. [PMID: 34644546 DOI: 10.1016/j.neuron.2021.09.032] [Citation(s) in RCA: 43] [Impact Index Per Article: 14.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/07/2021] [Revised: 07/30/2021] [Accepted: 09/14/2021] [Indexed: 02/08/2023]
Abstract
The hippocampal formation is linked to spatial navigation, but there is little corroboration from freely moving primates with concurrent monitoring of head and gaze stances. We recorded neural activity across hippocampal regions in rhesus macaques during free foraging in an open environment while tracking their head and eye. Theta activity was intermittently present at movement onset and modulated by saccades. Many neurons were phase-locked to theta, with few showing phase precession. Most neurons encoded a mixture of spatial variables beyond place and grid tuning. Spatial representations were dominated by facing location and allocentric direction, mostly in head, rather than gaze, coordinates. Importantly, eye movements strongly modulated neural activity in all regions. These findings reveal that the macaque hippocampal formation represents three-dimensional (3D) space using a multiplexed code, with head orientation and eye movement properties being dominant during free exploration.
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Affiliation(s)
- Dun Mao
- Center for Neural Science, New York University, New York, NY 10003, USA; Department of Neuroscience, Baylor College of Medicine, Houston, TX 77030, USA.
| | - Eric Avila
- Center for Neural Science, New York University, New York, NY 10003, USA
| | - Baptiste Caziot
- Center for Neural Science, New York University, New York, NY 10003, USA
| | - Jean Laurens
- Ernst Strüngmann Institute (ESI) for Neuroscience in Cooperation with Max Planck Society, Frankfurt, Germany
| | - J David Dickman
- Department of Neuroscience, Baylor College of Medicine, Houston, TX 77030, USA
| | - Dora E Angelaki
- Center for Neural Science, New York University, New York, NY 10003, USA; Department of Neuroscience, Baylor College of Medicine, Houston, TX 77030, USA; Tandon School of Engineering, New York University, New York, NY 11201, USA.
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Baeg E, Doudlah R, Swader R, Lee H, Han M, Kim SG, Rosenberg A, Kim B. MRI Compatible, Customizable, and 3D-Printable Microdrive for Neuroscience Research. eNeuro 2021; 8:ENEURO.0495-20.2021. [PMID: 33593730 PMCID: PMC7986532 DOI: 10.1523/eneuro.0495-20.2021] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/12/2020] [Revised: 01/26/2021] [Accepted: 01/30/2021] [Indexed: 02/02/2023] Open
Abstract
The effective connectivity of brain networks can be assessed using functional magnetic resonance imaging (fMRI) to quantify the effects of local electrical microstimulation (EM) on distributed neuronal activity. The delivery of EM to specific brain regions, particularly with layer specificity, requires MRI compatible equipment that provides fine control of a stimulating electrode's position within the brain while minimizing imaging artifacts. To this end, we developed a microdrive made entirely of MRI compatible materials. The microdrive uses an integrated penetration grid to guide electrodes and relies on a microdrilling technique to eliminate the need for large craniotomies, further reducing implant maintenance and image distortions. The penetration grid additionally serves as a built-in MRI marker, providing a visible fiducial reference for estimating probe trajectories. Following the initial implant procedure, these features allow for multiple electrodes to be inserted, removed, and repositioned with minimal effort, using a screw-type actuator. To validate the design of the microdrive, we conducted an EM-coupled fMRI study with a male macaque monkey. The results verified that the microdrive can be used to deliver EM during MRI procedures with minimal imaging artifacts, even within a 7 Tesla (7T) environment. Future applications of the microdrive include neuronal recordings and targeted drug delivery. We provide computer aided design (CAD) templates and a parts list for modifying and fabricating the microdrive for specific research needs. These designs provide a convenient, cost-effective approach to fabricating MRI compatible microdrives for neuroscience research.
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Affiliation(s)
- Eunha Baeg
- Center for Neuroscience Imaging Research, Institute for Basic Science, Suwon, Republic of Korea 16060
- Department of Biomedical Engineering, Sungkyunkwan University, Suwon, Republic of Korea 16419
| | - Raymond Doudlah
- Department of Neuroscience, School of Medicine and Public Health, University of Wisconsin-Madison, Madison, WI 53705
| | | | - Hyowon Lee
- System Design Engineering, University of Waterloo, Waterloo, Ontario, Canada N2L 3G1
| | - Minjun Han
- Department of Biomedical Engineering, Sungkyunkwan University, Suwon, Republic of Korea 16419
| | - Seong-Gi Kim
- Center for Neuroscience Imaging Research, Institute for Basic Science, Suwon, Republic of Korea 16060
- Department of Biomedical Engineering, Sungkyunkwan University, Suwon, Republic of Korea 16419
| | - Ari Rosenberg
- Department of Neuroscience, School of Medicine and Public Health, University of Wisconsin-Madison, Madison, WI 53705
| | - Byounghoon Kim
- Department of Neuroscience, School of Medicine and Public Health, University of Wisconsin-Madison, Madison, WI 53705
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Modelling and prediction of the dynamic responses of large-scale brain networks during direct electrical stimulation. Nat Biomed Eng 2021; 5:324-345. [PMID: 33526909 DOI: 10.1038/s41551-020-00666-w] [Citation(s) in RCA: 60] [Impact Index Per Article: 20.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/25/2019] [Accepted: 11/24/2020] [Indexed: 01/19/2023]
Abstract
Direct electrical stimulation can modulate the activity of brain networks for the treatment of several neurological and neuropsychiatric disorders and for restoring lost function. However, precise neuromodulation in an individual requires the accurate modelling and prediction of the effects of stimulation on the activity of their large-scale brain networks. Here, we report the development of dynamic input-output models that predict multiregional dynamics of brain networks in response to temporally varying patterns of ongoing microstimulation. In experiments with two awake rhesus macaques, we show that the activities of brain networks are modulated by changes in both stimulation amplitude and frequency, that they exhibit damping and oscillatory response dynamics, and that variabilities in prediction accuracy and in estimated response strength across brain regions can be explained by an at-rest functional connectivity measure computed without stimulation. Input-output models of brain dynamics may enable precise neuromodulation for the treatment of disease and facilitate the investigation of the functional organization of large-scale brain networks.
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Kang B, Druckmann S. Approaches to inferring multi-regional interactions from simultaneous population recordings: Inferring multi-regional interactions from simultaneous population recordings. Curr Opin Neurobiol 2020; 65:108-119. [PMID: 33227602 PMCID: PMC7853322 DOI: 10.1016/j.conb.2020.10.004] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/15/2020] [Revised: 09/28/2020] [Accepted: 10/03/2020] [Indexed: 12/20/2022]
Abstract
Most past studies of neural representations and dynamics have focused on recordings from single brain areas. However, growing evidence of brain-wide, parallel representations of cognitive variables suggests that analyzing neural representations and dynamics in individual brain areas can benefit from understanding the context of multi-regional interactions that support them. Moreover, perturbation experiments revealed that the manner in which these parallel representations interact with each other can differ dramatically across different pairs of brain areas. Recent advances in recording technology offer a potentially powerful substrate to study how multi-regional interactions coordinate neural representations in individual brain areas and dictate behavior on a single-trial basis through simultaneous recordings of multiple brain areas. We review pragmatic approaches to studying multi-regional interactions and illustrate them in the concrete context of a rodent delayed response task paradigm.
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Affiliation(s)
- Byungwoo Kang
- Dept. of Neurobiology, Stanford University, Stanford, CA, United States; Physics Department, Stanford University, Stanford, CA, United States
| | - Shaul Druckmann
- Dept. of Neurobiology, Stanford University, Stanford, CA, United States.
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31
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Suresh AK, Goodman JM, Okorokova EV, Kaufman M, Hatsopoulos NG, Bensmaia SJ. Neural population dynamics in motor cortex are different for reach and grasp. eLife 2020; 9:e58848. [PMID: 33200745 PMCID: PMC7688308 DOI: 10.7554/elife.58848] [Citation(s) in RCA: 27] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/12/2020] [Accepted: 10/27/2020] [Indexed: 11/25/2022] Open
Abstract
Low-dimensional linear dynamics are observed in neuronal population activity in primary motor cortex (M1) when monkeys make reaching movements. This population-level behavior is consistent with a role for M1 as an autonomous pattern generator that drives muscles to give rise to movement. In the present study, we examine whether similar dynamics are also observed during grasping movements, which involve fundamentally different patterns of kinematics and muscle activations. Using a variety of analytical approaches, we show that M1 does not exhibit such dynamics during grasping movements. Rather, the grasp-related neuronal dynamics in M1 are similar to their counterparts in somatosensory cortex, whose activity is driven primarily by afferent inputs rather than by intrinsic dynamics. The basic structure of the neuronal activity underlying hand control is thus fundamentally different from that underlying arm control.
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Affiliation(s)
- Aneesha K Suresh
- Committee on Computational Neuroscience, University of ChicagoChicagoUnited States
| | - James M Goodman
- Committee on Computational Neuroscience, University of ChicagoChicagoUnited States
| | | | - Matthew Kaufman
- Committee on Computational Neuroscience, University of ChicagoChicagoUnited States
- Department of Organismal Biology and Anatomy, University of ChicagoChicagoUnited States
- Grossman Institute for Neuroscience, Quantitative Biology and Human Behavior, University of ChicagoChicagoUnited States
| | - Nicholas G Hatsopoulos
- Committee on Computational Neuroscience, University of ChicagoChicagoUnited States
- Department of Organismal Biology and Anatomy, University of ChicagoChicagoUnited States
- Grossman Institute for Neuroscience, Quantitative Biology and Human Behavior, University of ChicagoChicagoUnited States
| | - Sliman J Bensmaia
- Committee on Computational Neuroscience, University of ChicagoChicagoUnited States
- Department of Organismal Biology and Anatomy, University of ChicagoChicagoUnited States
- Grossman Institute for Neuroscience, Quantitative Biology and Human Behavior, University of ChicagoChicagoUnited States
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Okorokova EV, Goodman JM, Hatsopoulos NG, Bensmaia SJ. Decoding hand kinematics from population responses in sensorimotor cortex during grasping. J Neural Eng 2020; 17:046035. [PMID: 32442987 DOI: 10.1088/1741-2552/ab95ea] [Citation(s) in RCA: 19] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Abstract
OBJECTIVE The hand-a complex effector comprising dozens of degrees of freedom of movement-endows us with the ability to flexibly, precisely, and effortlessly interact with objects. The neural signals associated with dexterous hand movements in primary motor cortex (M1) and somatosensory cortex (SC) have received comparatively less attention than have those associated with proximal upper limb control. APPROACH To fill this gap, we trained two monkeys to grasp objects varying in size and shape while tracking their hand postures and recording single-unit activity from M1 and SC. We then decoded their hand kinematics across tens of joints from population activity in these areas. MAIN RESULTS We found that we could accurately decode kinematics with a small number of neural signals and that different cortical fields carry different amounts of information about hand kinematics. In particular, neural signals in rostral M1 led to better performance than did signals in caudal M1, whereas Brodmann's area 3a outperformed areas 1 and 2 in SC. Moreover, decoding performance was higher for joint angles than joint angular velocities, in contrast to what has been found with proximal limb decoders. SIGNIFICANCE We conclude that cortical signals can be used for dexterous hand control in brain machine interface applications and that postural representations in SC may be exploited via intracortical stimulation to close the sensorimotor loop.
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Affiliation(s)
- Elizaveta V Okorokova
- Committee on Computational Neuroscience, University of Chicago, Chicago, IL, United States of America. Center for Bioelectric Interfaces, National Research University Higher School of Economics, Moscow, Russia
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Levi AJ, Huk AC. Interpreting temporal dynamics during sensory decision-making. CURRENT OPINION IN PHYSIOLOGY 2020; 16:27-32. [DOI: 10.1016/j.cophys.2020.04.006] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
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Kauvar IV, Machado TA, Yuen E, Kochalka J, Choi M, Allen WE, Wetzstein G, Deisseroth K. Cortical Observation by Synchronous Multifocal Optical Sampling Reveals Widespread Population Encoding of Actions. Neuron 2020; 107:351-367.e19. [PMID: 32433908 PMCID: PMC7687350 DOI: 10.1016/j.neuron.2020.04.023] [Citation(s) in RCA: 43] [Impact Index Per Article: 10.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/30/2020] [Revised: 04/01/2020] [Accepted: 04/26/2020] [Indexed: 01/05/2023]
Abstract
To advance the measurement of distributed neuronal population representations of targeted motor actions on single trials, we developed an optical method (COSMOS) for tracking neural activity in a largely uncharacterized spatiotemporal regime. COSMOS allowed simultaneous recording of neural dynamics at ∼30 Hz from over a thousand near-cellular resolution neuronal sources spread across the entire dorsal neocortex of awake, behaving mice during a three-option lick-to-target task. We identified spatially distributed neuronal population representations spanning the dorsal cortex that precisely encoded ongoing motor actions on single trials. Neuronal correlations measured at video rate using unaveraged, whole-session data had localized spatial structure, whereas trial-averaged data exhibited widespread correlations. Separable modes of neural activity encoded history-guided motor plans, with similar population dynamics in individual areas throughout cortex. These initial experiments illustrate how COSMOS enables investigation of large-scale cortical dynamics and that information about motor actions is widely shared between areas, potentially underlying distributed computations.
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Affiliation(s)
- Isaac V Kauvar
- Department of Bioengineering, Stanford University, Stanford, CA 94305, USA; Department of Electrical Engineering, Stanford University, Stanford, CA 94305, USA
| | - Timothy A Machado
- Department of Bioengineering, Stanford University, Stanford, CA 94305, USA
| | - Elle Yuen
- Department of Bioengineering, Stanford University, Stanford, CA 94305, USA
| | - John Kochalka
- Department of Bioengineering, Stanford University, Stanford, CA 94305, USA; Neuroscience Graduate Program, Stanford University, Stanford, CA 94305, USA
| | - Minseung Choi
- Department of Bioengineering, Stanford University, Stanford, CA 94305, USA; Neuroscience Graduate Program, Stanford University, Stanford, CA 94305, USA
| | - William E Allen
- Department of Bioengineering, Stanford University, Stanford, CA 94305, USA; Neuroscience Graduate Program, Stanford University, Stanford, CA 94305, USA; Department of Biology, Stanford University, Stanford, CA 94305, USA
| | - Gordon Wetzstein
- Department of Electrical Engineering, Stanford University, Stanford, CA 94305, USA
| | - Karl Deisseroth
- Department of Bioengineering, Stanford University, Stanford, CA 94305, USA; Department of Psychiatry and Howard Hughes Medical Institute, Stanford University, Stanford, CA 94305, USA.
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Qiao S, Sedillo JI, Brown KA, Ferrentino B, Pesaran B. A Causal Network Analysis of Neuromodulation in the Mood Processing Network. Neuron 2020; 107:972-985.e6. [PMID: 32645299 DOI: 10.1016/j.neuron.2020.06.012] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/10/2019] [Revised: 04/21/2020] [Accepted: 06/09/2020] [Indexed: 12/19/2022]
Abstract
Neural decoding and neuromodulation technologies hold great promise for treating mood and other brain disorders in next-generation therapies that manipulate functional brain networks. Here we perform a novel causal network analysis to decode multiregional communication in the primate mood processing network and determine how neuromodulation, short-burst tetanic microstimulation (sbTetMS), alters multiregional network communication. The causal network analysis revealed a mechanism of network excitability that regulates when a sender stimulation site communicates with receiver sites. Decoding network excitability from neural activity at modulator sites predicted sender-receiver communication, whereas sbTetMS neuromodulation temporarily disrupted sender-receiver communication. These results reveal specific network mechanisms of multiregional communication and suggest a new generation of brain therapies that combine neural decoding to predict multiregional communication with neuromodulation to disrupt multiregional communication.
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Affiliation(s)
- Shaoyu Qiao
- Center for Neural Science, New York University, New York, NY 10003, USA
| | - J Isaac Sedillo
- Center for Neural Science, New York University, New York, NY 10003, USA
| | - Kevin A Brown
- Center for Neural Science, New York University, New York, NY 10003, USA
| | | | - Bijan Pesaran
- Center for Neural Science, New York University, New York, NY 10003, USA; Neuroscience Institute, New York University Langone Health, New York, NY 10016, USA; Department of Neurology, New York University Langone Health, New York, NY 10016, USA.
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36
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Klein L, Pothof F, Raducanu BC, Klon-Lipok J, Shapcott KA, Musa S, Andrei A, Aarts AA, Paul O, Singer W, Ruther P. High-density electrophysiological recordings in macaque using a chronically implanted 128-channel passive silicon probe. J Neural Eng 2020; 17:026036. [PMID: 32217819 DOI: 10.1088/1741-2552/ab8436] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
Abstract
OBJECTIVE The analysis of interactions among local populations of neurons in the cerebral cortex (e.g. within cortical microcolumns) requires high resolution and high channel count recordings from chronically implanted laminar microelectrode arrays. The request for high-density recordings of a large number of recording sites can presently only be accomplished by probes realized using complementary metal-oxide-semiconductor (CMOS) technology. In preparation for their use in non-human primates, we aimed for neural probe validation in a head-fixed approach analyzing the long-term recording capability. APPROACH We examined chronically implanted silicon-based laminar probes, realized using a CMOS technology in combination with micromachining, to record from the primary visual cortex (V1) of a monkey. We used a passive CMOS probe that had 128 electrodes arranged at a pitch of 22.5 µm in four columns and 32 rows on a slender shank. In order to validate the performance of a dedicated microdrive, the overall dimensions of probe and interface boards were chosen to be compatible with the final active CMOS probe comprising integrated circuitry. MAIN RESULTS Using the passive probe, we recorded simultaneously local field potentials (LFP) and spiking multiunit activity (MUA) in V1 of an awake behaving macaque monkey. We found that an insertion through the dura and subsequent readjustments of the chronically implanted neural probe was possible and allowed us to record stable LFPs for more than five months. The quality of MUA degraded within the first month but remained sufficiently high to permit mapping of receptive fields during the full recording period. SIGNIFICANCE We conclude that the passive silicon probe enables semi-chronic recordings of high quality of LFP and MUA for a time span exceeding five months. The new microdrive compatible with a commercial recording chamber successfully demonstrated the readjustment of the probe position while the implemented plug structure effectively reduced brain tissue movement relative to the probe.
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Affiliation(s)
- Liane Klein
- Ernst Strüngmann Institute (ESI) gGmbH for Neuroscience in Cooperation with Max Planck Society, Deutschordenstraße 46, D-60528, Frankfurt am Main, Germany. Max Planck Institute for Brain Research, Max-von-Laue-Str. 4, D-60438, Frankfurt am Main, Germany. Institute of Cell Biology and Neuroscience, Goethe-University Frankfurt, Max von Laue Str. 13, D-60438, Frankfurt am Main, Germany. These authors have contributed equally to this work
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van Daal RJJ, Sun JJ, Ceyssens F, Michon F, Kraft M, Puers R, Kloosterman F. System for recording from multiple flexible polyimide neural probes in freely behaving animals. J Neural Eng 2020; 17:016046. [DOI: 10.1088/1741-2552/ab5e19] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
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Goodman JM, Tabot GA, Lee AS, Suresh AK, Rajan AT, Hatsopoulos NG, Bensmaia S. Postural Representations of the Hand in the Primate Sensorimotor Cortex. Neuron 2019; 104:1000-1009.e7. [PMID: 31668844 PMCID: PMC7172114 DOI: 10.1016/j.neuron.2019.09.004] [Citation(s) in RCA: 25] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/07/2019] [Revised: 06/04/2019] [Accepted: 09/05/2019] [Indexed: 01/07/2023]
Abstract
Manual dexterity requires proprioceptive feedback about the state of the hand. To date, study of the neural basis of proprioception in the cortex has focused primarily on reaching movements to the exclusion of hand-specific behaviors such as grasping. To fill this gap, we record both time-varying hand kinematics and neural activity evoked in somatosensory and motor cortices as monkeys grasp a variety of objects. We find that neurons in the somatosensory cortex, as well as in the motor cortex, preferentially track time-varying postures of multi-joint combinations spanning the entire hand. This contrasts with neural responses during reaching movements, which preferentially track time-varying movement kinematics of the arm, such as velocity and speed of the limb, rather than its time-varying postural configuration. These results suggest different representations of arm and hand movements suited to the different functional roles of these two effectors.
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Affiliation(s)
- James M Goodman
- Committee on Computational Neuroscience, University of Chicago, Chicago, IL, USA
| | - Gregg A Tabot
- Committee on Computational Neuroscience, University of Chicago, Chicago, IL, USA
| | - Alex S Lee
- Committee on Computational Neuroscience, University of Chicago, Chicago, IL, USA
| | - Aneesha K Suresh
- Committee on Computational Neuroscience, University of Chicago, Chicago, IL, USA
| | - Alexander T Rajan
- Committee on Computational Neuroscience, University of Chicago, Chicago, IL, USA
| | - Nicholas G Hatsopoulos
- Committee on Computational Neuroscience, University of Chicago, Chicago, IL, USA; Department of Organismal Biology and Anatomy, University of Chicago, Chicago, IL, USA; Grossman Institute for Neuroscience, Quantitative Biology, and Human Behavior, University of Chicago, Chicago, IL, USA
| | - Sliman Bensmaia
- Committee on Computational Neuroscience, University of Chicago, Chicago, IL, USA; Department of Organismal Biology and Anatomy, University of Chicago, Chicago, IL, USA; Grossman Institute for Neuroscience, Quantitative Biology, and Human Behavior, University of Chicago, Chicago, IL, USA.
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Localization of movable electrodes in a multi-electrode microdrive in nonhuman primates. J Neurosci Methods 2019; 330:108505. [PMID: 31711885 DOI: 10.1016/j.jneumeth.2019.108505] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/03/2019] [Revised: 11/04/2019] [Accepted: 11/07/2019] [Indexed: 11/24/2022]
Abstract
BACKGROUND Recently, large-scale semi-chronic recording systems have been developed, unique in their capability to record simultaneously from multiple individually moveable electrodes. As these recording systems can cover a large area, knowledge of the exact location of each individual electrode is crucial. Currently, the only method of keeping track of electrode depth and thus location is through detailed notebook keeping on neural activity. NEW METHOD We have improved the electrode localization by combining pre- and postoperative anatomical magnetic resonance imaging (MRI) scans with high resolution computed tomography (CT) scans throughout the experiment, and validated our method by comparing the resulting location estimates with traditional notebook-keeping. Finally, the actual location of a selection of electrodes was marked at the end of the experiment by creating small metallic depositions using electrical stimulation, and thereby made visible on MRI. RESULTS Combining CT scans with a high resolution, artefact reducing sequence during the experiment with a preoperative MRI scan provides crucial information about the exact electrode location of multielectrode arrays with individually moveable electrodes. COMPARISON WITH EXISTING METHODS The information obtained from the hybrid CT-MR image and the notes on spiking activity showed a similar pattern, with the clear advantage of the visualization of the exact position of the electrodes using our method. CONCLUSIONS The described technique allows for a precise anatomical identification of the recorded brain areas and thus to draw strong conclusions about the role of each targeted cortical area in the behavior under study.
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40
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Musk E. An Integrated Brain-Machine Interface Platform With Thousands of Channels. J Med Internet Res 2019; 21:e16194. [PMID: 31642810 PMCID: PMC6914248 DOI: 10.2196/16194] [Citation(s) in RCA: 289] [Impact Index Per Article: 57.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/09/2019] [Accepted: 10/14/2019] [Indexed: 12/18/2022] Open
Abstract
Brain-machine interfaces hold promise for the restoration of sensory and motor function and the treatment of neurological disorders, but clinical brain-machine interfaces have not yet been widely adopted, in part, because modest channel counts have limited their potential. In this white paper, we describe Neuralink’s first steps toward a scalable high-bandwidth brain-machine interface system. We have built arrays of small and flexible electrode “threads,” with as many as 3072 electrodes per array distributed across 96 threads. We have also built a neurosurgical robot capable of inserting six threads (192 electrodes) per minute. Each thread can be individually inserted into the brain with micron precision for avoidance of surface vasculature and targeting specific brain regions. The electrode array is packaged into a small implantable device that contains custom chips for low-power on-board amplification and digitization: The package for 3072 channels occupies less than 23×18.5×2 mm3. A single USB-C cable provides full-bandwidth data streaming from the device, recording from all channels simultaneously. This system has achieved a spiking yield of up to 70% in chronically implanted electrodes. Neuralink’s approach to brain-machine interface has unprecedented packaging density and scalability in a clinically relevant package.
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Affiliation(s)
- Elon Musk
- Neuralink, San Francisco, CA, United States
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- Neuralink, San Francisco, CA, United States
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Kleinbart JE, Orsborn AL, Choi JS, Wang C, Qiao S, Viventi J, Pesaran B. A Modular Implant System for Multimodal Recording and Manipulation of the Primate Brain. ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. ANNUAL INTERNATIONAL CONFERENCE 2019; 2018:3362-3365. [PMID: 30441108 DOI: 10.1109/embc.2018.8512993] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Abstract
Neural circuitry can be investigated and manipulated using a variety of techniques, including electrical and optical recording and stimulation. At present, most neural interfaces are designed to accommodate a single mode of neural recording and/or manipulation, which limits the amount of data that can be extracted from a single population of neurons. To overcome these technical limitations, we developed a chronic, multi-scale, multi-modal chamber-based neural implant for use in non-human primates that accommodates electrophysiological recording and stimulation, optical manipulation, and wide-field imaging. We present key design features of the system and mechanical validation. We also present sample data from two non-human primate subjects to validate the efficacy of the design in vivo.
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42
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The brain’s default network: updated anatomy, physiology and evolving insights. Nat Rev Neurosci 2019; 20:593-608. [DOI: 10.1038/s41583-019-0212-7] [Citation(s) in RCA: 421] [Impact Index Per Article: 84.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 07/31/2019] [Indexed: 12/15/2022]
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43
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Murphy AP, Leopold DA. A parameterized digital 3D model of the Rhesus macaque face for investigating the visual processing of social cues. J Neurosci Methods 2019; 324:108309. [PMID: 31229584 PMCID: PMC7446874 DOI: 10.1016/j.jneumeth.2019.06.001] [Citation(s) in RCA: 17] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/10/2019] [Revised: 05/31/2019] [Accepted: 06/01/2019] [Indexed: 12/22/2022]
Abstract
BACKGROUND Rhesus macaques are the most popular model species for studying the neural basis of visual face processing and social interaction using intracranial methods. However, the challenge of creating realistic, dynamic, and parametric macaque face stimuli has limited the experimental control and ethological validity of existing approaches. NEW METHOD We performed statistical analyses of in vivo computed tomography data to generate an anatomically accurate, three-dimensional representation of Rhesus macaque cranio-facial morphology. The surface structures were further edited, rigged and textured by a professional digital artist with careful reference to photographs of macaque facial expression, colouration and pelage. RESULTS The model offers precise, continuous, parametric control of craniofacial shape, emotional expression, head orientation, eye gaze direction, and many other parameters that can be adjusted to render either static or dynamic high-resolution faces. Example single-unit responses to such stimuli in macaque inferotemporal cortex demonstrate the value of parametric control over facial appearance and behaviours. COMPARISON WITH EXISTING METHOD(S) The generation of such a high-dimensionality and systematically controlled stimulus set of conspecific faces, with accurate craniofacial modelling and professional finalization of facial details, is currently not achievable using existing methods. CONCLUSIONS The results herald a new set of possibilities in adaptive sampling of a high-dimensional and socially meaningful feature space, thus opening the door to systematic testing of hypotheses about the abundant neural specialization for faces found in the primate.
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Affiliation(s)
- Aidan P Murphy
- Section on Cognitive Neurophysiology and Imaging, NIMH, Bethesda, MD, USA.
| | - David A Leopold
- Section on Cognitive Neurophysiology and Imaging, NIMH, Bethesda, MD, USA
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Drew PJ, Winder AT, Zhang Q. Twitches, Blinks, and Fidgets: Important Generators of Ongoing Neural Activity. Neuroscientist 2019; 25:298-313. [PMID: 30311838 PMCID: PMC6800083 DOI: 10.1177/1073858418805427] [Citation(s) in RCA: 32] [Impact Index Per Article: 6.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Abstract
Animals and humans continuously engage in small, spontaneous motor actions, such as blinking, whisking, and postural adjustments ("fidgeting"). These movements are accompanied by changes in neural activity in sensory and motor regions of the brain. The frequency of these motions varies in time, is affected by sensory stimuli, arousal levels, and pathology. These fidgeting behaviors can be entrained by sensory stimuli. Fidgeting behaviors will cause distributed, bilateral functional activation in the 0.01 to 0.1 Hz frequency range that will show up in functional magnetic resonance imaging and wide-field calcium neuroimaging studies, and will contribute to the observed functional connectivity among brain regions. However, despite the large potential of these behaviors to drive brain-wide activity, these fidget-like behaviors are rarely monitored. We argue that studies of spontaneous and evoked brain dynamics in awake animals and humans should closely monitor these fidgeting behaviors. Differences in these fidgeting behaviors due to arousal or pathology will "contaminate" ongoing neural activity, and lead to apparent differences in functional connectivity. Monitoring and accounting for the brain-wide activations by these behaviors is essential during experiments to differentiate fidget-driven activity from internally driven neural dynamics.
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Affiliation(s)
- Patrick J Drew
- Department of Engineering Science and Mechanics, Pennsylvania State University, University Park, PA, USA
- Department of Neurosurgery and Department of Biomedical Engineering, Pennsylvania State University, University Park, PA, USA
| | - Aaron T Winder
- Department of Engineering Science and Mechanics, Pennsylvania State University, University Park, PA, USA
| | - Qingguang Zhang
- Department of Engineering Science and Mechanics, Pennsylvania State University, University Park, PA, USA
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45
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Marcos E, Londei F, Genovesio A. Hidden Markov Models Predict the Future Choice Better Than a PSTH-Based Method. Neural Comput 2019; 31:1874-1890. [PMID: 31335289 DOI: 10.1162/neco_a_01216] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/04/2022]
Abstract
Beyond average firing rate, other measurable signals of neuronal activity are fundamental to an understanding of behavior. Recently, hidden Markov models (HMMs) have been applied to neural recordings and have described how neuronal ensembles process information by going through sequences of different states. Such collective dynamics are impossible to capture by just looking at the average firing rate. To estimate how well HMMs can decode information contained in single trials, we compared HMMs with a recently developed classification method based on the peristimulus time histogram (PSTH). The accuracy of the two methods was tested by using the activity of prefrontal neurons recorded while two monkeys were engaged in a strategy task. In this task, the monkeys had to select one of three spatial targets based on an instruction cue and on their previous choice. We show that by using the single trial's neural activity in a period preceding action execution, both models were able to classify the monkeys' choice with an accuracy higher than by chance. Moreover, the HMM was significantly more accurate than the PSTH-based method, even in cases in which the HMM performance was low, although always above chance. Furthermore, the accuracy of both methods was related to the number of neurons exhibiting spatial selectivity within an experimental session. Overall, our study shows that neural activity is better described when not only the mean activity of individual neurons is considered and that therefore, the study of other signals rather than only the average firing rate is fundamental to an understanding of the dynamics of neuronal ensembles.
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Affiliation(s)
- Encarni Marcos
- Department of Physiology and Pharmacology, Sapienza University of Rome, Rome 00185, Italy, and Instituto de Neurociencias de Alicante, Consejo Superior de Investigaciones Científicas-Universidad Miguel Hernández de Elche, Sant Joan d'Alacant, Alicante 03550, Spain
| | - Fabrizio Londei
- Department of Physiology and Pharmacology, Sapienza University of Rome, Rome 00185, Italy
| | - Aldo Genovesio
- Department of Physiology and Pharmacology, Sapienza University of Rome, Rome 00185, Italy
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Sandhaeger F, von Nicolai C, Miller EK, Siegel M. Monkey EEG links neuronal color and motion information across species and scales. eLife 2019; 8:e45645. [PMID: 31287792 PMCID: PMC6615858 DOI: 10.7554/elife.45645] [Citation(s) in RCA: 17] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/30/2019] [Accepted: 06/15/2019] [Indexed: 11/26/2022] Open
Abstract
It remains challenging to relate EEG and MEG to underlying circuit processes and comparable experiments on both spatial scales are rare. To close this gap between invasive and non-invasive electrophysiology we developed and recorded human-comparable EEG in macaque monkeys during visual stimulation with colored dynamic random dot patterns. Furthermore, we performed simultaneous microelectrode recordings from 6 areas of macaque cortex and human MEG. Motion direction and color information were accessible in all signals. Tuning of the non-invasive signals was similar to V4 and IT, but not to dorsal and frontal areas. Thus, MEG and EEG were dominated by early visual and ventral stream sources. Source level analysis revealed corresponding information and latency gradients across cortex. We show how information-based methods and monkey EEG can identify analogous properties of visual processing in signals spanning spatial scales from single units to MEG - a valuable framework for relating human and animal studies.
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Affiliation(s)
- Florian Sandhaeger
- Centre for Integrative NeuroscienceUniversity of TübingenTübingenGermany
- Hertie Institute for Clinical Brain ResearchUniversity of TübingenTübingenGermany
- MEG CenterUniversity of TübingenTübingenGermany
- IMPRS for Cognitive and Systems NeuroscienceUniversity of TübingenTübingenGermany
| | - Constantin von Nicolai
- Centre for Integrative NeuroscienceUniversity of TübingenTübingenGermany
- Hertie Institute for Clinical Brain ResearchUniversity of TübingenTübingenGermany
- MEG CenterUniversity of TübingenTübingenGermany
| | - Earl K Miller
- The Picower Institute for Learning and Memory and Department of Brain and Cognitive SciencesMassachusetts Institute of TechnologyCambridgeUnited States
| | - Markus Siegel
- Centre for Integrative NeuroscienceUniversity of TübingenTübingenGermany
- Hertie Institute for Clinical Brain ResearchUniversity of TübingenTübingenGermany
- MEG CenterUniversity of TübingenTübingenGermany
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47
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Modulation of Beta Oscillations for Implicit Motor Timing in Primate Sensorimotor Cortex during Movement Preparation. Neurosci Bull 2019; 35:826-840. [PMID: 31062334 DOI: 10.1007/s12264-019-00387-4] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/14/2018] [Accepted: 12/09/2018] [Indexed: 01/03/2023] Open
Abstract
Motor timing is an important part of sensorimotor control. Previous studies have shown that beta oscillations embody the process of temporal perception in explicit timing tasks. In contrast, studies focusing on beta oscillations in implicit timing tasks are lacking. In this study, we set up an implicit motor timing task and found a modulation pattern of beta oscillations with temporal perception during movement preparation. We trained two macaques in a repetitive visually-guided reach-to-grasp task with different holding intervals. Spikes and local field potentials were recorded from microelectrode arrays in the primary motor cortex, primary somatosensory cortex, and posterior parietal cortex. We analyzed the association between beta oscillations and temporal interval in fixed-duration experiments (500 ms as the Short Group and 1500 ms as the Long Group) and random-duration experiments (500 ms to 1500 ms). The results showed that the peak beta frequencies in both experiments ranged from 15 Hz to 25 Hz. The beta power was higher during the hold period than the movement (reach and grasp) period. Further, in the fixed-duration experiments, the mean power as well as the maximum rate of change of beta power in the first 300 ms were higher in the Short Group than in the Long Group when aligned with the Center Hit event. In contrast, in the random-duration experiments, the corresponding values showed no statistical differences among groups. The peak latency of beta power was shorter in the Short Group than in the Long Group in the fixed-duration experiments, while no consistent modulation pattern was found in the random-duration experiments. These results indicate that beta oscillations can modulate with temporal interval in their power mode. The synchronization period of beta power could reflect the cognitive set maintaining working memory of the temporal structure and attention.
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Billard MW, Bahari F, Kimbugwe J, Alloway KD, Gluckman BJ. The systemDrive: a Multisite, Multiregion Microdrive with Independent Drive Axis Angling for Chronic Multimodal Systems Neuroscience Recordings in Freely Behaving Animals. eNeuro 2018; 5:ENEURO.0261-18.2018. [PMID: 30627656 PMCID: PMC6325560 DOI: 10.1523/eneuro.0261-18.2018] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/03/2018] [Revised: 12/06/2018] [Accepted: 12/11/2018] [Indexed: 02/07/2023] Open
Abstract
A multielectrode system that can address widely separated targets at multiple sites across multiple brain regions with independent implant angling is needed to investigate neural function and signaling in systems and circuits of small animals. Here, we present the systemDrive, a novel multisite, multiregion microdrive that is capable of moving microwire electrode bundles into targets along independent and nonparallel drive trajectories. Our design decouples the stereotaxic surgical placement of individual guide cannulas for each trajectory from the placement of a flexible drive structure. This separation enables placement of many microwire multitrodes along widely spaced and independent drive axes with user-set electrode trajectories and depths from a single microdrive body, and achieves stereotaxic precision with each. The system leverages tight tube-cannula tolerances and geometric constraints on flexible drive axes to ensure concentric alignment of electrode bundles within guide cannulas. Additionally, the headmount and microdrive both have an open-center design to allow for the placement of additional sensing modalities. This design is the first, in the context of small rodent chronic research, to provide the capability to finely position microwires through multiple widely distributed cell groups, each with stereotaxic precision, along arbitrary and nonparallel trajectories that are not restricted to emanate from a single source. We demonstrate the use of the systemDrive in male Long-Evans rats to observe simultaneous single-unit and multiunit activity from multiple widely separated sleep-wake regulatory brainstem cell groups, along with cortical and hippocampal activity, during free behavior over multiple many-day continuous recording periods.
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Affiliation(s)
- Myles W. Billard
- Department of Engineering Science and Mechanics, Penn State University, University Park, Pennsylvania 16802
- Center for Neural Engineering, Penn State University, University Park, Pennsylvania 16802
| | - Fatemeh Bahari
- Department of Engineering Science and Mechanics, Penn State University, University Park, Pennsylvania 16802
- Center for Neural Engineering, Penn State University, University Park, Pennsylvania 16802
| | - John Kimbugwe
- Center for Neural Engineering, Penn State University, University Park, Pennsylvania 16802
| | - Kevin D. Alloway
- Center for Neural Engineering, Penn State University, University Park, Pennsylvania 16802
- Department of Neural and Behavioral Sciences, Penn State University, University Park, Pennsylvania 16802
| | - Bruce J. Gluckman
- Department of Engineering Science and Mechanics, Penn State University, University Park, Pennsylvania 16802
- Center for Neural Engineering, Penn State University, University Park, Pennsylvania 16802
- Department of Neurosurgery, Penn State University, University Park, Pennsylvania 16802
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49
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Feature-Based Visual Short-Term Memory Is Widely Distributed and Hierarchically Organized. Neuron 2018; 99:215-226.e4. [DOI: 10.1016/j.neuron.2018.05.026] [Citation(s) in RCA: 37] [Impact Index Per Article: 6.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/09/2017] [Revised: 02/17/2018] [Accepted: 05/16/2018] [Indexed: 11/22/2022]
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50
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Blonde JD, Roussy M, Luna R, Mahmoudian B, Gulli RA, Barker KC, Lau JC, Martinez-Trujillo JC. Customizable cap implants for neurophysiological experimentation. J Neurosci Methods 2018; 304:103-117. [PMID: 29694848 DOI: 10.1016/j.jneumeth.2018.04.016] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/21/2017] [Revised: 04/09/2018] [Accepted: 04/20/2018] [Indexed: 11/16/2022]
Abstract
BACKGROUND Several primate neurophysiology laboratories have adopted acrylic-free, custom-fit cranial implants. These implants are often comprised of titanium or plastic polymers, such as polyether ether ketone (PEEK). Titanium is favored for its mechanical strength and osseointegrative properties whereas PEEK is notable for its lightweight, machinability, and MRI compatibility. Recent titanium/PEEK implants have proven to be effective in minimizing infection and implant failure, thereby prolonging experiments and optimizing the scientific contribution of a single primate. NEW METHOD We created novel, customizable PEEK 'cap' implants that contour to the primate's skull. The implants were created using MRI and/or CT data, SolidWorks software and CNC-machining. RESULTS Three rhesus macaques were implanted with a PEEK cap implant. Head fixation and chronic recordings were successfully performed. Improvements in design and surgical technique solved issues of granulation tissue formation and headpost screw breakage. COMPARISON WITH EXISTING METHODS Primate cranial implants have traditionally been fastened to the skull using acrylic and anchor screws. This technique is prone to skin recession, infection, and implant failure. More recent methods have used imaging data to create custom-fit titanium/PEEK implants with radially extending feet or vertical columns. Compared to our design, these implants are more surgically invasive over time, have less force distribution, and/or do not optimize the utilizable surface area of the skull. CONCLUSIONS Our PEEK cap implants served as an effective and affordable means to perform electrophysiological experimentation while reducing surgical invasiveness, providing increased strength, and optimizing useful surface area.
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Affiliation(s)
- Jackson D Blonde
- Cognitive Neurophysiology Laboratory, Department of Physiology and Pharmacology, Schulich School of Medicine and Dentistry, Robarts Research Institute and the Brain and Mind Institute, Western University, 1151 Richmond St. N., Room 7239, London, ON, N6A 5B7, Canada.
| | - Megan Roussy
- Cognitive Neurophysiology Laboratory, Department of Physiology and Pharmacology, Schulich School of Medicine and Dentistry, Robarts Research Institute and the Brain and Mind Institute, Western University, 1151 Richmond St. N., Room 7239, London, ON, N6A 5B7, Canada.
| | - Rogelio Luna
- Cognitive Neurophysiology Laboratory, Department of Physiology and Pharmacology, Schulich School of Medicine and Dentistry, Robarts Research Institute and the Brain and Mind Institute, Western University, 1151 Richmond St. N., Room 7239, London, ON, N6A 5B7, Canada.
| | - Borna Mahmoudian
- Cognitive Neurophysiology Laboratory, Department of Physiology and Pharmacology, Schulich School of Medicine and Dentistry, Robarts Research Institute and the Brain and Mind Institute, Western University, 1151 Richmond St. N., Room 7239, London, ON, N6A 5B7, Canada.
| | - Roberto A Gulli
- Cognitive Neurophysiology Laboratory, Department of Physiology and Pharmacology, Schulich School of Medicine and Dentistry, Robarts Research Institute and the Brain and Mind Institute, Western University, 1151 Richmond St. N., Room 7239, London, ON, N6A 5B7, Canada.
| | - Kevin C Barker
- Cognitive Neurophysiology Laboratory, Department of Physiology and Pharmacology, Schulich School of Medicine and Dentistry, Robarts Research Institute and the Brain and Mind Institute, Western University, 1151 Richmond St. N., Room 7239, London, ON, N6A 5B7, Canada; Neuronitek, 5846 William St., Lucan, ON, NOM 2J0, Canada.
| | - Jonathan C Lau
- Imaging Research Laboratories, Robarts Research Institute, Western University, 1151 Richmond St. N., London, ON, N6A 5B7, Canada; Division of Neurosurgery, Schulich School of Medicine and Dentistry, Department of Clinical Neurological Sciences, London Health Sciences Centre, University Hospital, Western University, London, ON, Canada.
| | - Julio C Martinez-Trujillo
- Cognitive Neurophysiology Laboratory, Department of Physiology and Pharmacology, Schulich School of Medicine and Dentistry, Robarts Research Institute and the Brain and Mind Institute, Western University, 1151 Richmond St. N., Room 7239, London, ON, N6A 5B7, Canada.
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