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Sargent D, Amthor JS, Stinziano JR, Evans JR, Whitney SM, Bange MP, Tissue DT, Conaty WC, Sharwood RE. The importance of species-specific and temperature-sensitive parameterisation of A/C i models: A case study using cotton (Gossypium hirsutum L.) and the automated 'OptiFitACi' R-package. PLANT, CELL & ENVIRONMENT 2024; 47:1701-1715. [PMID: 38294051 DOI: 10.1111/pce.14800] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/07/2022] [Revised: 11/10/2023] [Accepted: 12/15/2023] [Indexed: 02/01/2024]
Abstract
Leaf gas exchange measurements are an important tool for inferring a plant's photosynthetic biochemistry. In most cases, the responses of photosynthetic CO2 assimilation to variable intercellular CO2 concentrations (A/Ci response curves) are used to model the maximum (potential) rate of carboxylation by ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco, Vcmax) and the rate of photosynthetic electron transport at a given incident photosynthetically active radiation flux density (PAR; JPAR). The standard Farquhar-von Caemmerer-Berry model is often used with default parameters of Rubisco kinetic values and mesophyll conductance to CO2 (gm) derived from tobacco that may be inapplicable across species. To study the significance of using such parameters for other species, here we measured the temperature responses of key in vitro Rubisco catalytic properties and gm in cotton (Gossypium hirsutum cv. Sicot 71) and derived Vcmax and J2000 (JPAR at 2000 µmol m-2 s-1 PAR) from cotton A/Ci curves incrementally measured at 15°C-40°C using cotton and other species-specific sets of input parameters with our new automated fitting R package 'OptiFitACi'. Notably, parameterisation by a set of tobacco parameters produced unrealistic J2000:Vcmax ratio of <1 at 25°C, two- to three-fold higher estimates of Vcmax above 15°C, up to 2.3-fold higher estimates of J2000 and more variable estimates of Vcmax and J2000, for our cotton data compared to model parameterisation with cotton-derived values. We determined that errors arise when using a gm,25 of 2.3 mol m-2 s-1 MPa-1 or less and Rubisco CO2-affinities in 21% O2 (KC 21%O2) at 25°C outside the range of 46-63 Pa to model A/Ci responses in cotton. We show how the A/Ci modelling capabilities of 'OptiFitACi' serves as a robust, user-friendly, and flexible extension of 'plantecophys' by providing simplified temperature-sensitivity and species-specificity parameterisation capabilities to reduce variability when modelling Vcmax and J2000.
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Affiliation(s)
- Demi Sargent
- Hawkesbury Institute for the Environment, Western Sydney University, Richmond, New South Wales, Australia
- CSIRO Agriculture and Food, Narrabri, New South Wales, Australia
- Research School of Biology, Australian National University, Canberra, Australian Capital Territory, Australia
| | - Jeffrey S Amthor
- Department of Biological Sciences, Center for Ecosystem Science and Society, Northern Arizona University, Flagstaff, Arizona, USA
| | | | - John R Evans
- Research School of Biology, Australian National University, Canberra, Australian Capital Territory, Australia
| | - Spencer M Whitney
- Research School of Biology, Australian National University, Canberra, Australian Capital Territory, Australia
| | - Michael P Bange
- Cotton Seed Distributors Ltd, Wee Waa, New South Wales, Australia
| | - David T Tissue
- Hawkesbury Institute for the Environment, Western Sydney University, Richmond, New South Wales, Australia
- Global Centre for Land-Based Innovation, Hawkesbury Campus, Western Sydney University, Richmond, New South Wales, Australia
| | - Warren C Conaty
- CSIRO Agriculture and Food, Narrabri, New South Wales, Australia
| | - Robert E Sharwood
- Hawkesbury Institute for the Environment, Western Sydney University, Richmond, New South Wales, Australia
- Global Centre for Land-Based Innovation, Hawkesbury Campus, Western Sydney University, Richmond, New South Wales, Australia
- School of Science, Western Sydney University, Richmond, New South Wales, Australia
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2
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Xu Y, Liu J, Ren C, Niu X, Zhang T, Huo K. Mulched Drip Fertigation with Growth Inhibitors Reduces Bundle-Sheath Cell Leakage and Improves Photosynthesis Capacity and Barley Production in Semi-Arid Regions. PLANTS (BASEL, SWITZERLAND) 2024; 13:239. [PMID: 38256791 PMCID: PMC10819993 DOI: 10.3390/plants13020239] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/10/2023] [Revised: 01/06/2024] [Accepted: 01/10/2024] [Indexed: 01/24/2024]
Abstract
A better understanding of the factors that reduce bundle-sheath cell leakage to CO2 (Փ), enhance 13C carbon isotope discrimination, and enhance the photosynthetic capacity of barley leaves will be useful to develop a nutrient- and water-saving strategy for dry-land farming systems. Therefore, barley plants were exposed to a novel nitrification inhibitor (NI) (3,4-dimethyl-1H-pyrazol-1-yl succinic acid) (DMPSA) and a urease inhibitor (UI) (N-butyl thiophosphorictriamide (NBPT)) with mulched drip fertigation treatments, which included HF (high-drip fertigation (370 mm) under a ridge furrow system), MF (75% of HF, moderate-drip fertigation under a ridge furrow system), LF (50% of HF, low-drip fertigation under a ridge furrow system), and TP (traditional planting with no inhibitors or drip fertigation strategies). The results indicated that the nitrification inhibitor combined with mulched drip fertigation significantly reduced bundle-sheath cell leakage to CO2 (Փ) as a result of increased soil water content; this was demonstrated by the light and CO2 response curves of the photosynthesis capacity (An), the apparent quantum efficiency (α), and the 13C-photosynthate distribution. In the inhibitor-based strategy, the use of the urease and nitrification inhibitors reduced Փ by 35% and 39% compared with TP. In the NI-HF strategy, it was found that barley could retain the maximum photosynthesis capacity by increasing the leaf area index (LAI), An, rubisco content, soluble protein, dry matter per plant, and productivity. The CO2 and light response curves were considerably improved in the NI-HF and NI-MF treatments due to a higher 13C carbon isotope (Δ‱), respiration rate (Rd), and Ci/Ca, therefore obtaining the minimum Փ value. With both inhibitors, there was a significant difference between HF and LF drip fertigation. The NI-MF treatment significantly increased the grain yield, total chlorophyll content, WUE, and NUE by 52%, 47%, 57%, and 45%, respectively. Collectively, the results suggest that the new nitrification inhibitor (DMPSA) with HF or MF mulched drip fertigation could be promoted in semi-arid regions in order to mitigate bundle-sheath cell leakage to CO2 (Փ), without negatively affecting barley production and leading to the nutrient and water use efficiency of barley.
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Affiliation(s)
| | | | | | | | | | - Kecang Huo
- Institute of Industrial Crops and Malting Barley, Gansu Academy of Agricultural Sciences, Lanzhou 730070, China; (Y.X.); (J.L.); (C.R.); (X.N.); (T.Z.)
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3
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Bouvier JW. Evolution: Unearthing missing links in the origin of our planet's primary carbon-fixing enzyme. Curr Biol 2023; 33:R1301-R1303. [PMID: 38113844 DOI: 10.1016/j.cub.2023.11.009] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2023]
Abstract
Form I rubisco underpins life on Earth, but the origins of its anomalous and highly complex multimeric structure have long proven elusive. New research helps to unravel this enigma by uncovering key missing links in the enzyme's evolutionary history.
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Affiliation(s)
- Jacques W Bouvier
- Department of Biology, University of Oxford, South Parks Road, Oxford OX1 3RB, UK.
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4
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Petrík P, Petek-Petrik A, Mukarram M, Schuldt B, Lamarque LJ. Leaf physiological and morphological constraints of water-use efficiency in C 3 plants. AOB PLANTS 2023; 15:plad047. [PMID: 37560762 PMCID: PMC10407996 DOI: 10.1093/aobpla/plad047] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/26/2022] [Accepted: 07/05/2023] [Indexed: 08/11/2023]
Abstract
The increasing evaporative demand due to climate change will significantly affect the balance of carbon assimilation and water losses of plants worldwide. The development of crop varieties with improved water-use efficiency (WUE) will be critical for adapting agricultural strategies under predicted future climates. This review aims to summarize the most important leaf morpho-physiological constraints of WUE in C3 plants and identify gaps in knowledge. From the carbon gain side of the WUE, the discussed parameters are mesophyll conductance, carboxylation efficiency and respiratory losses. The traits and parameters affecting the waterside of WUE balance discussed in this review are stomatal size and density, stomatal control and residual water losses (cuticular and bark conductance), nocturnal conductance and leaf hydraulic conductance. In addition, we discussed the impact of leaf anatomy and crown architecture on both the carbon gain and water loss components of WUE. There are multiple possible targets for future development in understanding sources of WUE variability in plants. We identified residual water losses and respiratory carbon losses as the greatest knowledge gaps of whole-plant WUE assessments. Moreover, the impact of trichomes, leaf hydraulic conductance and canopy structure on plants' WUE is still not well understood. The development of a multi-trait approach is urgently needed for a better understanding of WUE dynamics and optimization.
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Affiliation(s)
- Peter Petrík
- Karlsruhe Institute of Technology (KIT), Institute of Meteorology and Climate Research-Atmospheric Environmental Research (IMK-IFU), Kreuzeckbahnstraße 19, 82467 Garmisch-Partenkirchen, Germany
| | - Anja Petek-Petrik
- Institute of Botany, Czech Academy of Sciences, Lidická 971, 602 00 Brno, Czech Republic
| | - Mohammad Mukarram
- Department of Phytology, Faculty of Forestry, Technical University in Zvolen, T.G. Masaryka 24, 960 01 Zvolen, Slovakia
| | - Bernhard Schuldt
- Chair of Forest Botany, Institute of Forest Botany and Forest Zoology, Technical University of Dresden (TUD), Pienner Str. 7, 01737 Tharandt, Germany
| | - Laurent J Lamarque
- Département des Sciences de l’environnement, Université du Québec à Trois-Rivières, Trois-Rivières, QC G8Z 4M3, Canada
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5
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Cox AJF, Hartley IP, Meir P, Sitch S, Dusenge ME, Restrepo Z, González-Caro S, Villegas JC, Uddling J, Mercado LM. Acclimation of photosynthetic capacity and foliar respiration in Andean tree species to temperature change. THE NEW PHYTOLOGIST 2023; 238:2329-2344. [PMID: 36987979 DOI: 10.1111/nph.18900] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/27/2023] [Accepted: 03/13/2023] [Indexed: 05/19/2023]
Abstract
Climate warming is causing compositional changes in Andean tropical montane forests (TMFs). These shifts are hypothesised to result from differential responses to warming of cold- and warm-affiliated species, with the former experiencing mortality and the latter migrating upslope. The thermal acclimation potential of Andean TMFs remains unknown. Along a 2000 m Andean altitudinal gradient, we planted individuals of cold- and warm-affiliated species (under common soil and irrigation), exposing them to the hot and cold extremes of their thermal niches, respectively. We measured the response of net photosynthesis (Anet ), photosynthetic capacity and leaf dark respiration (Rdark ) to warming/cooling, 5 months after planting. In all species, Anet and photosynthetic capacity at 25°C were highest when growing at growth temperatures (Tg ) closest to their thermal means, declining with warming and cooling in cold-affiliated and warm-affiliated species, respectively. When expressed at Tg , photosynthetic capacity and Rdark remained unchanged in cold-affiliated species, but the latter decreased in warm-affiliated counterparts. Rdark at 25°C increased with temperature in all species, but remained unchanged when expressed at Tg . Both species groups acclimated to temperature, but only warm-affiliated species decreased Rdark to photosynthetic capacity ratio at Tg as temperature increased. This could confer them a competitive advantage under future warming.
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Affiliation(s)
- Andrew J F Cox
- Geography, Faculty of Environment, Science and Economy, University of Exeter, Exeter, EX4 4RKJ, UK
| | - Iain P Hartley
- Geography, Faculty of Environment, Science and Economy, University of Exeter, Exeter, EX4 4RKJ, UK
| | - Patrick Meir
- School of Geosciences, University of Edinburgh, Edinburgh, EH9 3JN, UK
- Division of Plant Sciences, Research School of Biology, The Australian National University, Canberra, ACT, 2601, Australia
| | - Stephen Sitch
- Geography, Faculty of Environment, Science and Economy, University of Exeter, Exeter, EX4 4RKJ, UK
| | - Mirindi Eric Dusenge
- Geography, Faculty of Environment, Science and Economy, University of Exeter, Exeter, EX4 4RKJ, UK
- Department of Biological and Environmental Sciences, University of Gothenburg, PO Box 461, Gothenburg, SE-405 30, Sweden
- Department of Biology, The University of Western Ontario, London, ON, N6A 3K7, Canada
| | - Zorayda Restrepo
- Grupo de Investigación en Ecología Aplicada, Universidad de Antioquia, Medellín, Colombia
- UK Centre for Ecology and Hydrology, Crowmarsh-Gifford, Wallingford, OX10 8BB, UK
| | - Sebastian González-Caro
- Geography, Faculty of Environment, Science and Economy, University of Exeter, Exeter, EX4 4RKJ, UK
- UK Centre for Ecology and Hydrology, Crowmarsh-Gifford, Wallingford, OX10 8BB, UK
| | - Juan Camilo Villegas
- Grupo de Investigación en Ecología Aplicada, Universidad de Antioquia, Medellín, Colombia
| | - Johan Uddling
- Department of Biological and Environmental Sciences, University of Gothenburg, PO Box 461, Gothenburg, SE-405 30, Sweden
| | - Lina M Mercado
- Geography, Faculty of Environment, Science and Economy, University of Exeter, Exeter, EX4 4RKJ, UK
- UK Centre for Ecology and Hydrology, Crowmarsh-Gifford, Wallingford, OX10 8BB, UK
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6
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Aguiló-Nicolau P, Galmés J, Fais G, Capó-Bauçà S, Cao G, Iñiguez C. Singular adaptations in the carbon assimilation mechanism of the polyextremophile cyanobacterium Chroococcidiopsis thermalis. PHOTOSYNTHESIS RESEARCH 2023; 156:231-245. [PMID: 36941458 PMCID: PMC10154277 DOI: 10.1007/s11120-023-01008-y] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/08/2022] [Accepted: 02/16/2023] [Indexed: 05/03/2023]
Abstract
Cyanobacteria largely contribute to the biogeochemical carbon cycle fixing ~ 25% of the inorganic carbon on Earth. However, the carbon acquisition and assimilation mechanisms in Cyanobacteria are still underexplored regardless of being of great importance for shedding light on the origins of autotropism on Earth and providing new bioengineering tools for crop yield improvement. Here, we fully characterized these mechanisms from the polyextremophile cyanobacterium Chroococcidiopsis thermalis KOMAREK 1964/111 in comparison with the model cyanobacterial strain, Synechococcus sp. PCC6301. In particular, we analyzed the Rubisco kinetics along with the in vivo photosynthetic CO2 assimilation in response to external dissolved inorganic carbon, the effect of CO2 concentrating mechanism (CCM) inhibitors on net photosynthesis and the anatomical particularities of their carboxysomes when grown under either ambient air (0.04% CO2) or 2.5% CO2-enriched air. Our results show that Rubisco from C. thermalis possess the highest specificity factor and carboxylation efficiency ever reported for Cyanobacteria, which were accompanied by a highly effective CCM, concentrating CO2 around Rubisco more than 140-times the external CO2 levels, when grown under ambient CO2 conditions. Our findings provide new insights into the Rubisco kinetics of Cyanobacteria, suggesting that improved Sc/o values can still be compatible with a fast-catalyzing enzyme. The combination of Rubisco kinetics and CCM effectiveness in C. thermalis relative to other cyanobacterial species might indicate that the co-evolution between Rubisco and CCMs in Cyanobacteria is not as constrained as in other phylogenetic groups.
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Affiliation(s)
- Pere Aguiló-Nicolau
- Research Group on Plant Biology Under Mediterranean Conditions, Universitat de les Illes Balears, INAGEA, Ctra. Valldemossa km. 7.5, 07122, Palma, Balearic Islands, Spain
| | - Jeroni Galmés
- Research Group on Plant Biology Under Mediterranean Conditions, Universitat de les Illes Balears, INAGEA, Ctra. Valldemossa km. 7.5, 07122, Palma, Balearic Islands, Spain.
| | - Giacomo Fais
- Interdepartmental Centre of Environmental Science and Engineering, University of Cagliari, Via San Giorgio 12, 09124, Cagliari, Italy
| | - Sebastià Capó-Bauçà
- Research Group on Plant Biology Under Mediterranean Conditions, Universitat de les Illes Balears, INAGEA, Ctra. Valldemossa km. 7.5, 07122, Palma, Balearic Islands, Spain
| | - Giacomo Cao
- Interdepartmental Centre of Environmental Science and Engineering, University of Cagliari, Via San Giorgio 12, 09124, Cagliari, Italy
- Department of Mechanical, Chemical and Materials Engineering, University of Cagliari, Via Marengo 2, 09123, Cagliari, Italy
| | - Concepción Iñiguez
- Research Group on Plant Biology Under Mediterranean Conditions, Universitat de les Illes Balears, INAGEA, Ctra. Valldemossa km. 7.5, 07122, Palma, Balearic Islands, Spain
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7
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Iqbal WA, Lisitsa A, Kapralov MV. Predicting plant Rubisco kinetics from RbcL sequence data using machine learning. JOURNAL OF EXPERIMENTAL BOTANY 2023; 74:638-650. [PMID: 36094849 PMCID: PMC9833099 DOI: 10.1093/jxb/erac368] [Citation(s) in RCA: 7] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 04/28/2022] [Accepted: 09/12/2022] [Indexed: 06/15/2023]
Abstract
Ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) is responsible for the conversion of atmospheric CO2 to organic carbon during photosynthesis, and often acts as a rate limiting step in the later process. Screening the natural diversity of Rubisco kinetics is the main strategy used to find better Rubisco enzymes for crop engineering efforts. Here, we demonstrate the use of Gaussian processes (GPs), a family of Bayesian models, coupled with protein encoding schemes, for predicting Rubisco kinetics from Rubisco large subunit (RbcL) sequence data. GPs trained on published experimentally obtained Rubisco kinetic datasets were applied to over 9000 sequences encoding RbcL to predict Rubisco kinetic parameters. Notably, our predicted kinetic values were in agreement with known trends, e.g. higher carboxylation turnover rates (Kcat) for Rubisco enzymes from C4 or crassulacean acid metabolism (CAM) species, compared with those found in C3 species. This is the first study demonstrating machine learning approaches as a tool for screening and predicting Rubisco kinetics, which could be applied to other enzymes.
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Affiliation(s)
- Wasim A Iqbal
- School of Natural and Environmental Sciences, Newcastle University, Newcastle upon Tyne, NE1 7RU, United Kingdom
| | - Alexei Lisitsa
- Department of Computer Science, University of Liverpool, Liverpool, L69 3BX, United Kingdom
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8
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Suárez JC, Urban MO, Contreras AT, Noriega JE, Deva C, Beebe SE, Polanía JA, Casanoves F, Rao IM. Water Use, Leaf Cooling and Carbon Assimilation Efficiency of Heat Resistant Common Beans Evaluated in Western Amazonia. FRONTIERS IN PLANT SCIENCE 2021; 12:644010. [PMID: 34912351 PMCID: PMC8667034 DOI: 10.3389/fpls.2021.644010] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 01/27/2021] [Accepted: 10/21/2021] [Indexed: 06/14/2023]
Abstract
In our study, we analyzed 30years of climatological data revealing the bean production risks for Western Amazonia. Climatological profiling showed high daytime and nighttime temperatures combined with high relative humidity and low vapor pressure deficit. Our understanding of the target environment allows us to select trait combinations for reaching higher yields in Amazonian acid soils. Our research was conducted using 64 bean lines with different genetic backgrounds. In high temperatures, we identified three water use efficiency typologies in beans based on detailed data analysis on gasometric exchange. Profligate water spenders and not water conservative accessions showed leaf cooling, and effective photosynthate partitioning to seeds, and these attributes were found to be related to higher photosynthetic efficiency. Thus, water spenders and not savers were recognized as heat resistant in acid soil conditions in Western Amazonia. Genotypes such as BFS 10, SEN 52, SER 323, different SEFs (SEF 73, SEF 10, SEF 40, SEF 70), SCR 56, SMR 173, and SMN 99 presented less negative effects of heat stress on yield. These genotypes could be suitable as parental lines for improving dry seed production. The improved knowledge on water-use efficiency typologies can be used for bean crop improvement efforts as well as further studies aimed at a better understanding of the intrinsic mechanisms of heat resistance in legumes.
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Affiliation(s)
- Juan Carlos Suárez
- Facultad de Ingeniería, Programa de Ingeniería Agroecológica, Universidad de la Amazonia, Florencia, Colombia
- Facultad de Ingeniería, Programa de Maestría en Sistemas Sostenibles de Producción, Universidad de la Amazonia, Florencia, Colombia
- Centro de Investigaciones Amazónicas CIMAZ Macagual César Augusto Estrada González, Grupo de Investigaciones Agroecosistemas y Conservación en Bosques Amazónicos-GAIA, Florencia, Colombia
| | - Milan O Urban
- International Center for Tropical Agriculture (CIAT), Cali, Colombia
| | - Amara Tatiana Contreras
- Facultad de Ingeniería, Programa de Ingeniería Agroecológica, Universidad de la Amazonia, Florencia, Colombia
- Facultad de Ingeniería, Programa de Maestría en Sistemas Sostenibles de Producción, Universidad de la Amazonia, Florencia, Colombia
| | - Jhon Eduar Noriega
- Facultad de Ingeniería, Programa de Ingeniería Agroecológica, Universidad de la Amazonia, Florencia, Colombia
- Facultad de Ingeniería, Programa de Maestría en Sistemas Sostenibles de Producción, Universidad de la Amazonia, Florencia, Colombia
| | - Chetan Deva
- Climate Impacts Group, School of Earth and Environment, Institute for Climate and Atmospheric Science, University of Leeds, Leeds, United Kingdom
| | - Stephen E Beebe
- International Center for Tropical Agriculture (CIAT), Cali, Colombia
| | - José A Polanía
- Departamento de Biología Molecular de Plantas, Instituto de Biotecnología, Universidad Nacional Autónoma de México, Cuernavaca, Mexico
| | - Fernando Casanoves
- CATIE - Centro Agronómico de Investigación y Enseñanza, Turrialba, Costa Rica
| | - Idupulapati M Rao
- International Center for Tropical Agriculture (CIAT), Cali, Colombia
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Fan Y, Lv Z, Ge T, Li Y, Yang W, Zhang W, Ma S, Dai T, Huang Z. Night-Warming Priming at the Vegetative Stage Alleviates Damage to the Flag Leaf Caused by Post-anthesis Warming in Winter Wheat ( Triticum aestivum L.). FRONTIERS IN PLANT SCIENCE 2021; 12:706567. [PMID: 34691092 PMCID: PMC8526553 DOI: 10.3389/fpls.2021.706567] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 05/07/2021] [Accepted: 09/02/2021] [Indexed: 06/13/2023]
Abstract
The asymmetric warming in diurnal and seasonal temperature patterns plays an important role in crop distribution and productivity. Asymmetric warming during the early growth periods of winter wheat profoundly affects its vegetative growth and post-anthesis grain productivity. Field experiments were conducted on winter wheat to explore the impact of night warming treatment in winter (Winter warming treatment, WT) or spring (Spring warming treatment, ST) on the senescence of flag leaves and yield of wheat plants later treated with night warming during grain filling (Warming treatment during grain filling, FT). The results showed that FT decreased wheat yield by reducing the number of grains per panicle and per 1,000-grain weight and that the yield of wheat plants treated with FT declined to a greater extent than that of wheat plants treated with WT + FT or ST + FT. The net photosynthetic rate, chlorophyll content, and chlorophyll fluorescence parameters of the flag leaves of wheat plants treated with WT + FT or ST + FT were higher than those under the control treatment from 0 to 7 days after anthesis (DAA) but were lower than those under the control treatment and higher than those of wheat plants treated with FT alone from 14 to 28 DAA. The soluble protein and Rubisco contents in the flag leaves of wheat plants treated with WT + FT or ST + FT were high in the early grain-filling period and then gradually decreased to below those of the control treatment. These contents were greater in wheat plants treated with WT + FT than in wheat plants treated with ST + FT from 0 to 14 DAA, whereas the opposite was true from 21 to 28 DAA. Furthermore, WT + FT and ST + FT inhibited membrane lipid peroxidation by increasing superoxide dismutase and peroxidase activities and lowering phospholipase D (PLD), phosphatidic acid (PA), lipoxygenase (LOX), and free fatty acid levels in the early grain-filling period, but their inhibitory effects on membrane lipid peroxidation gradually weakened during the late grain-filling period. Night-warming priming alleviated the adverse effect of post-anthesis warming on yield by delaying the post-anthesis senescence of flag leaves.
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Affiliation(s)
- Yonghui Fan
- College of Agronomy, Anhui Agricultural University/Key Laboratory of Wheat Biology and Genetic Improvement on South Yellow and Huai River Valley, Ministry of Agriculture, Hefei, China
| | - Zhaoyan Lv
- College of Horticulture, Anhui Agricultural University, Hefei, China
| | - Ting Ge
- College of Agronomy, Anhui Agricultural University/Key Laboratory of Wheat Biology and Genetic Improvement on South Yellow and Huai River Valley, Ministry of Agriculture, Hefei, China
| | - Yuxing Li
- College of Agronomy, Anhui Agricultural University/Key Laboratory of Wheat Biology and Genetic Improvement on South Yellow and Huai River Valley, Ministry of Agriculture, Hefei, China
| | - Wei Yang
- College of Agronomy, Anhui Agricultural University/Key Laboratory of Wheat Biology and Genetic Improvement on South Yellow and Huai River Valley, Ministry of Agriculture, Hefei, China
| | - Wenjing Zhang
- College of Agronomy, Anhui Agricultural University/Key Laboratory of Wheat Biology and Genetic Improvement on South Yellow and Huai River Valley, Ministry of Agriculture, Hefei, China
| | - Shangyu Ma
- College of Agronomy, Anhui Agricultural University/Key Laboratory of Wheat Biology and Genetic Improvement on South Yellow and Huai River Valley, Ministry of Agriculture, Hefei, China
| | - Tingbo Dai
- Key Laboratory of Crop Physiology, Ecology and Production Management, Nanjing Agricultural University, Nanjing, China
| | - Zhenglai Huang
- College of Agronomy, Anhui Agricultural University/Key Laboratory of Wheat Biology and Genetic Improvement on South Yellow and Huai River Valley, Ministry of Agriculture, Hefei, China
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10
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Mahapatra K, Banerjee S, De S, Mitra M, Roy P, Roy S. An Insight Into the Mechanism of Plant Organelle Genome Maintenance and Implications of Organelle Genome in Crop Improvement: An Update. Front Cell Dev Biol 2021; 9:671698. [PMID: 34447743 PMCID: PMC8383295 DOI: 10.3389/fcell.2021.671698] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/24/2021] [Accepted: 07/21/2021] [Indexed: 12/19/2022] Open
Abstract
Besides the nuclear genome, plants possess two small extra chromosomal genomes in mitochondria and chloroplast, respectively, which contribute a small fraction of the organelles’ proteome. Both mitochondrial and chloroplast DNA have originated endosymbiotically and most of their prokaryotic genes were either lost or transferred to the nuclear genome through endosymbiotic gene transfer during the course of evolution. Due to their immobile nature, plant nuclear and organellar genomes face continuous threat from diverse exogenous agents as well as some reactive by-products or intermediates released from various endogenous metabolic pathways. These factors eventually affect the overall plant growth and development and finally productivity. The detailed mechanism of DNA damage response and repair following accumulation of various forms of DNA lesions, including single and double-strand breaks (SSBs and DSBs) have been well documented for the nuclear genome and now it has been extended to the organelles also. Recently, it has been shown that both mitochondria and chloroplast possess a counterpart of most of the nuclear DNA damage repair pathways and share remarkable similarities with different damage repair proteins present in the nucleus. Among various repair pathways, homologous recombination (HR) is crucial for the repair as well as the evolution of organellar genomes. Along with the repair pathways, various other factors, such as the MSH1 and WHIRLY family proteins, WHY1, WHY2, and WHY3 are also known to be involved in maintaining low mutation rates and structural integrity of mitochondrial and chloroplast genome. SOG1, the central regulator in DNA damage response in plants, has also been found to mediate endoreduplication and cell-cycle progression through chloroplast to nucleus retrograde signaling in response to chloroplast genome instability. Various proteins associated with the maintenance of genome stability are targeted to both nuclear and organellar compartments, establishing communication between organelles as well as organelles and nucleus. Therefore, understanding the mechanism of DNA damage repair and inter compartmental crosstalk mechanism in various sub-cellular organelles following induction of DNA damage and identification of key components of such signaling cascades may eventually be translated into strategies for crop improvement under abiotic and genotoxic stress conditions. This review mainly highlights the current understanding as well as the importance of different aspects of organelle genome maintenance mechanisms in higher plants.
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Affiliation(s)
- Kalyan Mahapatra
- Department of Botany, UGC Center for Advanced Studies, The University of Burdwan, Burdwan, India
| | - Samrat Banerjee
- Department of Botany, UGC Center for Advanced Studies, The University of Burdwan, Burdwan, India
| | - Sayanti De
- Department of Botany, UGC Center for Advanced Studies, The University of Burdwan, Burdwan, India
| | - Mehali Mitra
- Department of Botany, UGC Center for Advanced Studies, The University of Burdwan, Burdwan, India
| | - Pinaki Roy
- Department of Botany, UGC Center for Advanced Studies, The University of Burdwan, Burdwan, India
| | - Sujit Roy
- Department of Botany, UGC Center for Advanced Studies, The University of Burdwan, Burdwan, India
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11
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Fu L, Ren H, Xu S, Hu S, Yang J, Liu C. Planting models and mulching material strategies to reduce bundle sheath cell leakage and improve photosynthetic capacity and maize production in semi-arid climate. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2021; 28:2315-2327. [PMID: 32885335 DOI: 10.1007/s11356-020-10611-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/11/2020] [Accepted: 08/23/2020] [Indexed: 06/11/2023]
Abstract
Better understanding of soil water storage and photosynthetic regulation of maize production will be useful to develop a water-saving strategy in rain-fed conditions. Therefore, maize crop was grown under the different cultivation practices for analyzed light and CO2-response curves under various mulching strategies during 2017-2018 years. Six different treatments were used such as the following: PP, ridges and furrows zone covered with plastic film mulching; PS, ridges covered with plastic film and furrows zone with stalk mulching; PN, ridges covered with plastic film and furrows zone without mulching; TP, conventional flat planting with plastic film mulching; TS, conventional flat planting with stalk mulching; and TN, conventional flat planting without mulching. The PP treatment had considerable effects on rainwater collection, improved SWS, and maize productivity than that of TP treatment. Significantly increase of SWS was observed under the PP treatment as a result photosynthetic capacity (An) improved under light and CO2-response curves, apparent quantum efficiency (α), respiration rate, total chlorophyll ab content, and 13C-photosynthates distribution in different organs. Under the PP and TP treatments, the maize might keep a great photosynthetic capacity at the post-flowering stage through improving An, LAI, soluble protein, Rubisco contents, and grain yield. The CO2 and light-response curves were significantly enhanced at the PP treatment due to higher 13C carbon isotope (Δ‰) and Ci/Ca as a result lower bundle sheath to leakiness of CO2 (ɸ) compared with the rest of all treatments. The results suggested that PP cultivation practice was the best water-saving strategy because it reduced bundle sheath leakiness to CO2 (ɸ); as a result there's a significant improvement in soil water storage, LAI, 13C-photosynthates distribution, photosynthetic capacity parameters, and maize production.
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Affiliation(s)
- Lixin Fu
- Institute of Maize Research, Heilongjiang Academy of Agriculture Sciences, Harbin, 150086, China.
| | - Honglei Ren
- Institute of Maize Research, Heilongjiang Academy of Agriculture Sciences, Harbin, 150086, China
| | - Shengjun Xu
- Gansu Academy of Agricultural Sciences, Lanzhou, 730070, China
| | - Shaoxin Hu
- Institute of Maize Research, Heilongjiang Academy of Agriculture Sciences, Harbin, 150086, China
| | - Jianfei Yang
- Institute of Maize Research, Heilongjiang Academy of Agriculture Sciences, Harbin, 150086, China
| | - Chang Liu
- Institute of Maize Research, Heilongjiang Academy of Agriculture Sciences, Harbin, 150086, China
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12
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Leaf Transcriptome and Weight Gene Co-expression Network Analysis Uncovers Genes Associated with Photosynthetic Efficiency in Camellia oleifera. Biochem Genet 2020; 59:398-421. [PMID: 33040171 DOI: 10.1007/s10528-020-09995-6] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/01/2020] [Accepted: 08/06/2020] [Indexed: 10/23/2022]
Abstract
Camellia oleifera Abel. (C. oleifera) as an important economic tree species in China has drawn growing attention because of its highly commercial, medic, cosmetic, and ornamental value. To deepen our understanding about the photosynthetic characters during the whole developmental stage as well as the molecular basis of photosynthesis, a comparative analysis of the leaf transcriptome of two C. oleifera cultivars, 'Guoyou No.13' (GY13) and 'Xianglin No.82' (XL82), with different photosynthetic characteristics from May to September has been conducted. In this study, a group of genes related to photosynthesis, hormone regulation, circadian clock and transcription factor, involved in the photosynthetic advantage. Photosynthetic parameters from May to September of these two cultivars provided evidence supporting photosynthetic advantage of GY13 compared to XL82. In addition, expression levels of 12 differentially expressed genes (DEGs) were validated using real-time PCR (RT-PCR). To screen gene clusters and hub genes that might directly regulated the photosynthetic differences between cultivars, a Weight Gene Co-expression Network Analysis (WGCNA) was conducted. Three co-expression network (module) and top ten connected genes (hub genes) were identified that might play crucial role in the regulatory network of photosynthesis. The results not only showed multiple functional genes that might involve in the differences of photosynthetic characteristics between cultivars, but also provide some evidences for the heat tolerance might be an important character which helps GY13 kept higher photosynthetic parameters than XL82 during the developmental stage. In summary, our transcriptomic approach together with RT-PCR tests allowed us to expand our understanding of the characters of C. oleifera cultivars with different photosynthetic efficiency during the developmental stage and to further exploring new candidate genes involve in high photosynthetic efficiency in molecular-assisted breeding program of C. oleifera.
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13
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Fernie AR, Bachem CWB, Helariutta Y, Neuhaus HE, Prat S, Ruan YL, Stitt M, Sweetlove LJ, Tegeder M, Wahl V, Sonnewald S, Sonnewald U. Synchronization of developmental, molecular and metabolic aspects of source-sink interactions. NATURE PLANTS 2020; 6:55-66. [PMID: 32042154 DOI: 10.1038/s41477-020-0590-x] [Citation(s) in RCA: 76] [Impact Index Per Article: 19.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/21/2019] [Accepted: 12/28/2019] [Indexed: 05/02/2023]
Abstract
Plants have evolved a multitude of strategies to adjust their growth according to external and internal signals. Interconnected metabolic and phytohormonal signalling networks allow adaption to changing environmental and developmental conditions and ensure the survival of species in fluctuating environments. In agricultural ecosystems, many of these adaptive responses are not required or may even limit crop yield, as they prevent plants from realizing their fullest potential. By lifting source and sink activities to their maximum, massive yield increases can be foreseen, potentially closing the future yield gap resulting from an increasing world population and the transition to a carbon-neutral economy. To do so, a better understanding of the interplay between metabolic and developmental processes is required. In the past, these processes have been tackled independently from each other, but coordinated efforts are required to understand the fine mechanics of source-sink relations and thus optimize crop yield. Here, we describe approaches to design high-yielding crop plants utilizing strategies derived from current metabolic concepts and our understanding of the molecular processes determining sink development.
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Affiliation(s)
- Alisdair R Fernie
- Max Planck Institute of Molecular Plant Physiology, Potsdam, Germany.
| | | | - Yrjö Helariutta
- The Sainsbury Laboratory, University of Cambridge, Cambridge, UK
| | - H Ekkehard Neuhaus
- University of Kaiserslautern Pflanzenphysiologie, Kaiserslautern, Germany
| | - Salomé Prat
- Department of Plant Molecular Genetics, Centro Nacional de Biotecnología-CSIC, Madrid, Spain
| | - Yong-Ling Ruan
- School of Environmental & Life Sciences, University of Newcastle, Callaghan, New South Wales, Australia
| | - Mark Stitt
- Max Planck Institute of Molecular Plant Physiology, Potsdam, Germany
| | - Lee J Sweetlove
- Department of Plant Sciences, University of Oxford, Oxford, UK
| | - Mechthild Tegeder
- School of Biological Sciences, Washington State University, Pullman, WA, USA
| | - Vanessa Wahl
- Max Planck Institute of Molecular Plant Physiology, Potsdam, Germany
| | - Sophia Sonnewald
- Division of Biochemistry, Department of Biology, University of Erlangen-Nürnberg, Erlangen, Germany.
| | - Uwe Sonnewald
- Division of Biochemistry, Department of Biology, University of Erlangen-Nürnberg, Erlangen, Germany.
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14
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Sarabi B, Fresneau C, Ghaderi N, Bolandnazar S, Streb P, Badeck FW, Citerne S, Tangama M, David A, Ghashghaie J. Stomatal and non-stomatal limitations are responsible in down-regulation of photosynthesis in melon plants grown under the saline condition: Application of carbon isotope discrimination as a reliable proxy. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2019; 141:1-19. [PMID: 31125807 DOI: 10.1016/j.plaphy.2019.05.010] [Citation(s) in RCA: 30] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/20/2019] [Revised: 04/19/2019] [Accepted: 05/08/2019] [Indexed: 05/11/2023]
Abstract
Salinity is one of the most severe environmental stresses limiting agricultural crop production worldwide. Photosynthesis is one of the main biochemical processes getting affected by such stress conditions. Here we investigated the stomatal and non-stomatal factors during photosynthesis in two Iranian melon genotypes "Ghobadlu" and "Suski-e-Sabz", as well as the "Galia" F1 cultivar, with an insight into better understanding the physiological mechanisms involved in the response of melon plants to increasing salinity. After plants were established in the greenhouse, they were supplied with nutrient solutions containing three salinity levels (0, 50, or 100 mM NaCl) for 15 and 30 days. With increasing salinity, almost all of the measured traits (e.g. stomatal conductance, transpiration rate, internal to ambient CO2 concentration ratio (Ci/Ca), Rubisco and nitrate reductase activity, carbon isotope discrimination (Δ13C), chlorophyll content, relative water content (RWC), etc.) significantly decreased after 15 and 30 days of treatments. In contrast, the overall mean of water use efficiency (intrinsic and instantaneous WUE), leaf abscisic acid (ABA) and flavonol contents, as well as osmotic potential (ΨS), all increased remarkably with increasing stress, across all genotypes. In addition, notable correlations were found between Δ13C and leaf gas exchange parameters as well as most of the measured traits (e.g. leaf area, biomass, RWC, ΨS, etc.), encouraging the possibility of using Δ13C as an important proxy for indirect selection of melon genotypes with higher photosynthetic capacity and higher salinity tolerance. The overall results suggest that both stomatal and non-stomatal limitations play an important role in reduced photosynthesis rate in melon genotypes studied under NaCl stress. This conclusion is supported by the concurrently increased resistance to CO2 diffusion, and lower Rubisco activity under NaCl treatments at the two sampling dates, and this was revealed by the appearance of lower Ci/Ca ratios and lower Δ13C in the leaves of salt-treated plants.
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Affiliation(s)
- Behrooz Sarabi
- Department of Horticulture, Faculty of Agriculture, University of Tabriz, Tabriz, Iran; Department of Horticultural Sciences, Faculty of Agriculture, University of Kurdistan, Sanandaj, Iran.
| | - Chantal Fresneau
- Laboratoire D'Ecologie, Systématique et Evolution, Université Paris-Sud, CNRS-UMR8079, AgroParisTech, Université Paris-Saclay, 91400, Orsay, France
| | - Nasser Ghaderi
- Department of Horticultural Sciences, Faculty of Agriculture, University of Kurdistan, Sanandaj, Iran
| | - Sahebali Bolandnazar
- Department of Horticulture, Faculty of Agriculture, University of Tabriz, Tabriz, Iran
| | - Peter Streb
- Laboratoire D'Ecologie, Systématique et Evolution, Université Paris-Sud, CNRS-UMR8079, AgroParisTech, Université Paris-Saclay, 91400, Orsay, France
| | - Franz-Werner Badeck
- CREA-GPG, Consiglio per La Ricerca in Agricoltura e L'analisi Dell'economia Agraria (CREA), Genomics Research Centre (GPG), Fiorenzuola D'Arda, Italy
| | - Sylvie Citerne
- Institut Jean-Pierre Bourgin, INRA, AgroParisTech, CNRS, Université Paris-Saclay, 78000, Versailles, France
| | - Maëva Tangama
- Laboratoire D'Ecologie, Systématique et Evolution, Université Paris-Sud, CNRS-UMR8079, AgroParisTech, Université Paris-Saclay, 91400, Orsay, France
| | - Andoniaina David
- Laboratoire D'Ecologie, Systématique et Evolution, Université Paris-Sud, CNRS-UMR8079, AgroParisTech, Université Paris-Saclay, 91400, Orsay, France
| | - Jaleh Ghashghaie
- Laboratoire D'Ecologie, Systématique et Evolution, Université Paris-Sud, CNRS-UMR8079, AgroParisTech, Université Paris-Saclay, 91400, Orsay, France.
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15
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Kumarathunge DP, Medlyn BE, Drake JE, Tjoelker MG, Aspinwall MJ, Battaglia M, Cano FJ, Carter KR, Cavaleri MA, Cernusak LA, Chambers JQ, Crous KY, De Kauwe MG, Dillaway DN, Dreyer E, Ellsworth DS, Ghannoum O, Han Q, Hikosaka K, Jensen AM, Kelly JWG, Kruger EL, Mercado LM, Onoda Y, Reich PB, Rogers A, Slot M, Smith NG, Tarvainen L, Tissue DT, Togashi HF, Tribuzy ES, Uddling J, Vårhammar A, Wallin G, Warren JM, Way DA. Acclimation and adaptation components of the temperature dependence of plant photosynthesis at the global scale. THE NEW PHYTOLOGIST 2019; 222:768-784. [PMID: 30597597 DOI: 10.1111/nph.15668] [Citation(s) in RCA: 105] [Impact Index Per Article: 21.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/27/2018] [Accepted: 12/07/2018] [Indexed: 05/24/2023]
Abstract
The temperature response of photosynthesis is one of the key factors determining predicted responses to warming in global vegetation models (GVMs). The response may vary geographically, owing to genetic adaptation to climate, and temporally, as a result of acclimation to changes in ambient temperature. Our goal was to develop a robust quantitative global model representing acclimation and adaptation of photosynthetic temperature responses. We quantified and modelled key mechanisms responsible for photosynthetic temperature acclimation and adaptation using a global dataset of photosynthetic CO2 response curves, including data from 141 C3 species from tropical rainforest to Arctic tundra. We separated temperature acclimation and adaptation processes by considering seasonal and common-garden datasets, respectively. The observed global variation in the temperature optimum of photosynthesis was primarily explained by biochemical limitations to photosynthesis, rather than stomatal conductance or respiration. We found acclimation to growth temperature to be a stronger driver of this variation than adaptation to temperature at climate of origin. We developed a summary model to represent photosynthetic temperature responses and showed that it predicted the observed global variation in optimal temperatures with high accuracy. This novel algorithm should enable improved prediction of the function of global ecosystems in a warming climate.
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Affiliation(s)
- Dushan P Kumarathunge
- Hawkesbury Institute for the Environment, Western Sydney University, Locked Bag 1797, Penrith, NSW, 2751, Australia
- Plant Physiology Division, Coconut Research Institute of Sri Lanka, Lunuwila, 61150, Sri Lanka
| | - Belinda E Medlyn
- Hawkesbury Institute for the Environment, Western Sydney University, Locked Bag 1797, Penrith, NSW, 2751, Australia
| | - John E Drake
- Forest and Natural Resources Management, College of Environmental Science and Forestry, State University of New York, 1 Forestry Drive, Syracuse, NY, 13210, USA
| | - Mark G Tjoelker
- Hawkesbury Institute for the Environment, Western Sydney University, Locked Bag 1797, Penrith, NSW, 2751, Australia
| | - Michael J Aspinwall
- Department of Biology, University of North Florida, 1 UNF Drive, Jacksonville, FL, 32224, USA
| | - Michael Battaglia
- CSIRO Agriculture and Food, Private Bag 12, Hobart, Tasmania, 7001, Australia
| | - Francisco J Cano
- Hawkesbury Institute for the Environment, Western Sydney University, Locked Bag 1797, Penrith, NSW, 2751, Australia
| | - Kelsey R Carter
- School of Forest Resources & Environmental Science, Michigan Technological University, 1400 Townsend Dr., Houghton, MI, 49931, USA
| | - Molly A Cavaleri
- School of Forest Resources & Environmental Science, Michigan Technological University, 1400 Townsend Dr., Houghton, MI, 49931, USA
| | - Lucas A Cernusak
- College of Science and Engineering, James Cook University, Cairns, QLD, 4878, Australia
| | - Jeffrey Q Chambers
- Department of Geography, University of California Berkeley, 507 McCone Hall #4740, Berkeley, CA, 94720, USA
| | - Kristine Y Crous
- Hawkesbury Institute for the Environment, Western Sydney University, Locked Bag 1797, Penrith, NSW, 2751, Australia
| | - Martin G De Kauwe
- ARC Centre of Excellence for Climate Extremes, University of New South Wales, Sydney, NSW, 2052, Australia
| | - Dylan N Dillaway
- Thomashow Learning Laboratories, Unity College, 90 Quaker Hill Road, Unity, ME, 04988, USA
| | - Erwin Dreyer
- Université de Lorraine, Inra, Silva, F54000, Nancy, France
| | - David S Ellsworth
- Hawkesbury Institute for the Environment, Western Sydney University, Locked Bag 1797, Penrith, NSW, 2751, Australia
| | - Oula Ghannoum
- Hawkesbury Institute for the Environment, Western Sydney University, Locked Bag 1797, Penrith, NSW, 2751, Australia
| | - Qingmin Han
- Department of Plant Ecology, Forestry and Forest Products Research Institute (FFPRI), 1 Matsunosato, Tsukuba, Ibaraki, 305-8687, Japan
| | - Kouki Hikosaka
- Graduate School of Life Sciences, Tohoku University, Aoba Sendai, 980-8578, Japan
| | - Anna M Jensen
- Department of Forestry and Wood Technology, Linnaeus University, Växjö, Sweden
| | - Jeff W G Kelly
- Center for Sustainable Forestry at Pack Forest, University of Washington, 9010 453rd Street E, Eatonville, WA, 98328, USA
| | - Eric L Kruger
- Department of Atmospheric and Oceanic Sciences, University of Wisconsin-Madison, Madison, WI, 53706, USA
| | - Lina M Mercado
- College of Life and Environmental Sciences, University of Exeter, Exeter, EX4 4PS, UK
- Centre for Ecology and Hydrology, Crowmarsh-Gifford, Wallingford, OX10 8BB, UK
| | - Yusuke Onoda
- Graduate School of Agriculture, Kyoto University, Kyoto, 606-8502, Japan
| | - Peter B Reich
- Hawkesbury Institute for the Environment, Western Sydney University, Locked Bag 1797, Penrith, NSW, 2751, Australia
- Department of Forest Resources, University of Minnesota, St Paul, MN, 55108, USA
| | - Alistair Rogers
- Environmental and Climate Sciences Department, Brookhaven National Laboratory, Upton, NY, 11973-5000, USA
| | - Martijn Slot
- Smithsonian Tropical Research Institute, Apartado 0843-03092, Balboa, Ancón, Panama
| | - Nicholas G Smith
- Department of Biological Sciences, Texas Tech University, Lubbock, TX, USA
| | - Lasse Tarvainen
- Department of Forest Ecology and Management, Swedish University of Agricultural Sciences (SLU), SE-901 83, Umeå, Sweden
- Department of Biological and Environmental Sciences, University of Gothenburg, PO Box 461, Gothenburg, SE-405 30, Sweden
| | - David T Tissue
- Hawkesbury Institute for the Environment, Western Sydney University, Locked Bag 1797, Penrith, NSW, 2751, Australia
| | - Henrique F Togashi
- Department of Biological Sciences, Macquarie University, North Ryde, NSW, 2109, Australia
| | - Edgard S Tribuzy
- Instituto de Biodiversidade e Florestas, Universidade Federal do Oeste do Pará (UFOPA), CEP 68035-110, Santarém, PA, Brazil
| | - Johan Uddling
- Department of Biological and Environmental Sciences, University of Gothenburg, PO Box 461, Gothenburg, SE-405 30, Sweden
| | - Angelica Vårhammar
- Hawkesbury Institute for the Environment, Western Sydney University, Locked Bag 1797, Penrith, NSW, 2751, Australia
| | - Göran Wallin
- Department of Biological and Environmental Sciences, University of Gothenburg, PO Box 461, Gothenburg, SE-405 30, Sweden
| | - Jeffrey M Warren
- Climate Change Science Institute and Environmental Sciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, 37831, USA
| | - Danielle A Way
- Department of Biology, The University of Western Ontario, London, ON, Canada, N6A 5B6
- Nicholas School of the Environment, Duke University, Box 90328, Durham, NC, 27708, USA
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16
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Éva C, Oszvald M, Tamás L. Current and possible approaches for improving photosynthetic efficiency. PLANT SCIENCE : AN INTERNATIONAL JOURNAL OF EXPERIMENTAL PLANT BIOLOGY 2019; 280:433-440. [PMID: 30824023 DOI: 10.1016/j.plantsci.2018.11.010] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/11/2018] [Revised: 10/09/2018] [Accepted: 11/19/2018] [Indexed: 06/09/2023]
Abstract
One of the most important tasks laying ahead today's biotechnology is to improve crop productivity with the aim of meeting increased food and energy demands of humankind. Plant productivity depends on many genetic factors, including life cycle, harvest index, stress tolerance and photosynthetic activity. Many approaches were already tested or suggested to improve either. Limitations of photosynthesis have also been uncovered and efforts been taken to increase its efficiency. Examples include decreasing photosynthetic antennae size, increasing the photosynthetically available light spectrum, countering oxygenase activity of Rubisco by implementing C4 photosynthesis to C3 plants and altering source to sink transport of metabolites. A natural and effective photosynthetic adaptation, the sugar alcohol metabolism got however remarkably little attention in the last years, despite being comparably efficient as C4, and can be considered easier to introduce to new species. We also propose root to shoot carbon-dioxide transport as a means to improve photosynthetic performance and drought tolerance at the same time. Different suggestions and successful examples are covered here for improving plant photosynthesis as well as novel perspectives are presented for future research.
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Affiliation(s)
- Csaba Éva
- Applied Genomics Department, Agricultural Institute, Centre for Agricultural Research, Hungarian Academy of Sciences, Martonvásár 2462, Hungary.
| | - Mária Oszvald
- Plant Biology and Crop Science, Rothamsted Research, Harpenden, Hertfordshire AL5 2JQ, UK
| | - László Tamás
- Department of Plant Physiology and Molecular Plant Biology, Eötvös Loránd University, Budapest 1117, Hungary
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17
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Song Q, Su R, Chai Y, Goudia BD, Chen L, Hu YG. High photosynthetic capability observed in the wheat germplasm with rye chromosomes. JOURNAL OF PLANT PHYSIOLOGY 2017; 216:202-211. [PMID: 28710914 DOI: 10.1016/j.jplph.2017.06.012] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/09/2017] [Revised: 06/25/2017] [Accepted: 06/28/2017] [Indexed: 06/07/2023]
Abstract
Improving photosynthetic capability is one of the most important factors for increasing wheat yield potential. The photosynthetic capability of wheat germplasm with different alien chromosomes was investigated and compared with bread wheat cultivars (BC) in this study, including wheat addition lines (CA), hexaploid triticale (HT), octoploid triticale (OT), and synthetic hexaploid wheat lines (SHW). Results indicated that HT, OT, and SHW produced significantly higher biomass plant-1(BMPP), with HT displaying the highest grain yield plant-1 (GYPP). Distinct superiority of net photosynthetic rate (Pn) and carboxylation activities of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) was observed in HT and OT. Meanwhile, OT showed the highest expression of the Rubisco large subunit gene (rbcL) in the flag leaves at heading and grain-filling stages, though the coding region of rbcL was highly conserved in all investigated materials. Further analysis indicated that OT and Chinese Spring-rye disomic addition lines displayed higher expression of Rubisco small subunit gene (rbcS). Correlation analysis revealed significant and positive correlations between Pn and the expressions of rbcL (at both heading and grain-filling stages), the expression of rbcS (at heading stage), and the carboxylation activity of Rubisco (at grain-filling stage). Anatomical structure analysis of the chloroplasts showed SHW with longer chloroplasts and more chloroplast grana and grana lamella. In the present study, HT, OT, and Chinese Spring-rye disomic addition lines with rye chromosomes displayed greater photosynthetic capability than BC and SHW, and could be applied in breeding programs to improve the photosynthetic efficiency of wheat.
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Affiliation(s)
- Quanhao Song
- State Key Laboratory of Crop Stress Biology for Arid Areas, College of Agronomy, Northwest A&F University, Yangling, Shaanxi, 712100, China
| | - Rina Su
- State Key Laboratory of Crop Stress Biology for Arid Areas, College of Agronomy, Northwest A&F University, Yangling, Shaanxi, 712100, China
| | - Yongmao Chai
- State Key Laboratory of Crop Stress Biology for Arid Areas, College of Agronomy, Northwest A&F University, Yangling, Shaanxi, 712100, China
| | - Bachir Daoura Goudia
- State Key Laboratory of Crop Stress Biology for Arid Areas, College of Agronomy, Northwest A&F University, Yangling, Shaanxi, 712100, China
| | - Liang Chen
- State Key Laboratory of Crop Stress Biology for Arid Areas, College of Agronomy, Northwest A&F University, Yangling, Shaanxi, 712100, China
| | - Yin-Gang Hu
- State Key Laboratory of Crop Stress Biology for Arid Areas, College of Agronomy, Northwest A&F University, Yangling, Shaanxi, 712100, China; Institute of Water Saving Agriculture in Arid Regions of China, Northwest A&F University, Yangling, Shaanxi, 712100, China.
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18
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Hermida-Carrera C, Fares MA, Fernández Á, Gil-Pelegrín E, Kapralov MV, Mir A, Molins A, Peguero-Pina JJ, Rocha J, Sancho-Knapik D, Galmés J. Positively selected amino acid replacements within the RuBisCO enzyme of oak trees are associated with ecological adaptations. PLoS One 2017; 12:e0183970. [PMID: 28859145 PMCID: PMC5578625 DOI: 10.1371/journal.pone.0183970] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/16/2017] [Accepted: 08/15/2017] [Indexed: 12/29/2022] Open
Abstract
Phylogenetic analysis by maximum likelihood (PAML) has become the standard approach to study positive selection at the molecular level, but other methods may provide complementary ways to identify amino acid replacements associated with particular conditions. Here, we compare results of the decision tree (DT) model method with ones of PAML using the key photosynthetic enzyme RuBisCO as a model system to study molecular adaptation to particular ecological conditions in oaks (Quercus). We sequenced the chloroplast rbcL gene encoding RuBisCO large subunit in 158 Quercus species, covering about a third of the global genus diversity. It has been hypothesized that RuBisCO has evolved differentially depending on the environmental conditions and leaf traits governing internal gas diffusion patterns. Here, we show, using PAML, that amino acid replacements at the residue positions 95, 145, 251, 262 and 328 of the RuBisCO large subunit have been the subject of positive selection along particular Quercus lineages associated with the leaf traits and climate characteristics. In parallel, the DT model identified amino acid replacements at sites 95, 219, 262 and 328 being associated with the leaf traits and climate characteristics, exhibiting partial overlap with the results obtained using PAML.
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Affiliation(s)
- Carmen Hermida-Carrera
- Research Group on Plant Biology under Mediterranean Conditions, Universitat de les Illes Balears-INAGEA, Palma, Balearic Islands, Spain
| | - Mario A. Fares
- Integrative and Systems Biology Group, Department of Abiotic Stress, Instituto de Biología Molecular y Celular de Plantas (CSIC–UPV), Valencia, Spain
- Department of Genetics, University of Dublin, Trinity College Dublin, Dublin 2, Ireland
| | - Ángel Fernández
- Unidad de Recursos Forestales, C.I.T.A. de Aragón, Zaragoza, Spain
| | | | - Maxim V. Kapralov
- School of Natural and Environmental Sciences, Newcastle University, Newcastle-Upon-Tyne, United Kingdom
| | - Arnau Mir
- Computational Biology and Bioinformatics Research Group, Department of Mathematics and Computer Science, Universitat de les Illes Balears, Palma, Balearic Islands, Spain
| | - Arántzazu Molins
- Research Group on Plant Biology under Mediterranean Conditions, Universitat de les Illes Balears-INAGEA, Palma, Balearic Islands, Spain
| | | | - Jairo Rocha
- Computational Biology and Bioinformatics Research Group, Department of Mathematics and Computer Science, Universitat de les Illes Balears, Palma, Balearic Islands, Spain
| | | | - Jeroni Galmés
- Research Group on Plant Biology under Mediterranean Conditions, Universitat de les Illes Balears-INAGEA, Palma, Balearic Islands, Spain
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Butti SK, Mohan SV. Autotrophic biorefinery: dawn of the gaseous carbon feedstock. FEMS Microbiol Lett 2017; 364:4062148. [DOI: 10.1093/femsle/fnx166] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/07/2017] [Accepted: 08/02/2017] [Indexed: 12/23/2022] Open
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20
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Xie XL, Xia XJ, Kuang S, Zhang XL, Yin XR, Yu JQ, Chen KS. A novel ethylene responsive factor CitERF13 plays a role in photosynthesis regulation. PLANT SCIENCE : AN INTERNATIONAL JOURNAL OF EXPERIMENTAL PLANT BIOLOGY 2017; 256:112-119. [PMID: 28167024 DOI: 10.1016/j.plantsci.2016.11.001] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/23/2016] [Revised: 11/01/2016] [Accepted: 11/03/2016] [Indexed: 05/22/2023]
Abstract
Ethylene responsive factors (ERFs) act as critical downstream components of the ethylene signalling pathway in regulating plant development and stress responses. However little is known about its role in regulation of photosynthesis. Here, we identified an ethylene-inducible ERF gene in citrus, CitERF13. Transient over-expression of CitERF13 in N. tabacum leaves, resulted in a significant decrease in net photosynthetic rate. Closer examination of photosynthetic activity of PSII and PSI indicated that CitERF13 overexpression led to declines of Fv/Fm, Y(II) and Y(I). However, change in NPQ was less pronounced. CitERF13 overexpression also significantly reduced Vc,max, Jmax and AQY, indicating inhibition of the Calvin cycle. The expression of photosynthesis-related genes was suppressed to a variable extent in leaf blades transiently over-expressing CitERF13. CitERF13 transient overexpression in tobacco or citrus both resulted in a decline of Chlorophyll content and CitERF13 overexpressing tobacco leaf disc was more susceptible to chlorosis in response to MV-mediated oxidative stress. The results suggest that CitERF13 is potentially involved in suppressing photosynthesis through multiple pathways, for instance, inhibiting photochemical activity of photosynthesis, CO2 carboxylation capacity and chlorophyll metabolism.
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Affiliation(s)
- Xiu-Lan Xie
- College of Agriculture & Biotechnology, Zhejiang University, Zijingang Campus, Hangzhou, 310058, PR China; Zhejiang Provincial Key Laboratory of Horticultural Plant Integrative Biology, Zhejiang University, Zijingang Campus, Hangzhou, 310058, PR China; The State Agriculture Ministry Laboratory of Horticultural Plant Growth, Development and Quality Improvement, Zhejiang University, Zijingang Campus, Hangzhou, 310058, PR China
| | - Xiao-Jian Xia
- College of Agriculture & Biotechnology, Zhejiang University, Zijingang Campus, Hangzhou, 310058, PR China; Zhejiang Provincial Key Laboratory of Horticultural Plant Integrative Biology, Zhejiang University, Zijingang Campus, Hangzhou, 310058, PR China; The State Agriculture Ministry Laboratory of Horticultural Plant Growth, Development and Quality Improvement, Zhejiang University, Zijingang Campus, Hangzhou, 310058, PR China
| | - Sheng Kuang
- College of Agriculture & Biotechnology, Zhejiang University, Zijingang Campus, Hangzhou, 310058, PR China
| | - Xi-Li Zhang
- College of Agriculture & Biotechnology, Zhejiang University, Zijingang Campus, Hangzhou, 310058, PR China
| | - Xue-Ren Yin
- College of Agriculture & Biotechnology, Zhejiang University, Zijingang Campus, Hangzhou, 310058, PR China; Zhejiang Provincial Key Laboratory of Horticultural Plant Integrative Biology, Zhejiang University, Zijingang Campus, Hangzhou, 310058, PR China; The State Agriculture Ministry Laboratory of Horticultural Plant Growth, Development and Quality Improvement, Zhejiang University, Zijingang Campus, Hangzhou, 310058, PR China
| | - Jing-Quan Yu
- College of Agriculture & Biotechnology, Zhejiang University, Zijingang Campus, Hangzhou, 310058, PR China; Zhejiang Provincial Key Laboratory of Horticultural Plant Integrative Biology, Zhejiang University, Zijingang Campus, Hangzhou, 310058, PR China; The State Agriculture Ministry Laboratory of Horticultural Plant Growth, Development and Quality Improvement, Zhejiang University, Zijingang Campus, Hangzhou, 310058, PR China
| | - Kun-Song Chen
- College of Agriculture & Biotechnology, Zhejiang University, Zijingang Campus, Hangzhou, 310058, PR China; Zhejiang Provincial Key Laboratory of Horticultural Plant Integrative Biology, Zhejiang University, Zijingang Campus, Hangzhou, 310058, PR China; The State Agriculture Ministry Laboratory of Horticultural Plant Growth, Development and Quality Improvement, Zhejiang University, Zijingang Campus, Hangzhou, 310058, PR China.
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Niinemets Ü, Berry JA, von Caemmerer S, Ort DR, Parry MAJ, Poorter H. Photosynthesis: ancient, essential, complex, diverse … and in need of improvement in a changing world. THE NEW PHYTOLOGIST 2017; 213:43-47. [PMID: 27891642 DOI: 10.1111/nph.14307] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/08/2023]
Affiliation(s)
- Ülo Niinemets
- Institute of Agricultural and Environmental Sciences, Estonian University of Life Sciences, Kreutzwaldi 1, Tartu, 51014, Estonia
- Estonian Academy of Sciences, Kohtu 6, Tallinn, 10130, Estonia
| | - Joseph A Berry
- Department of Global Ecology, Carnegie Institution of Washington, 260 Panama St, Stanford, CA, 94305, USA
| | - Susanne von Caemmerer
- Plant Science Division, Research School of Biology, The Australian National University, Canberra, ACT, 0200, Australia
| | - Donald R Ort
- USDA Agricultural Research Service & Department of Plant Biology, University of Illinois, Urbana, IL, 61801, USA
| | - Martin A J Parry
- Lancaster Environment Centre, Lancaster University, Lancaster, LA1 4YQ, UK
| | - Hendrik Poorter
- Plant Sciences (IBG-2), Forschungszentrum Jülich GmbH, Jülich, 52425, Germany
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22
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Flexas J. Genetic improvement of leaf photosynthesis and intrinsic water use efficiency in C3 plants: Why so much little success? PLANT SCIENCE : AN INTERNATIONAL JOURNAL OF EXPERIMENTAL PLANT BIOLOGY 2016; 251:155-161. [PMID: 27593473 DOI: 10.1016/j.plantsci.2016.05.002] [Citation(s) in RCA: 60] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/27/2016] [Revised: 04/28/2016] [Accepted: 05/03/2016] [Indexed: 05/07/2023]
Abstract
There is an urgent need for simultaneously increasing photosynthesis/yields and water use efficiency (WUE) in C3 crops. Potentially, this can be achieved by genetic manipulation of the key traits involved. However, despite significant efforts in the past two decades very limited success has been achieved. Here I argue that this is mostly due to the fact that single gene/single trait approaches have been used thus far. Photosynthesis models demonstrate that only limited improving of photosynthesis can be expected by large improvements of any of its single limiting factors, i.e. stomatal conductance, mesophyll conductance, and the biochemical capacity for photosynthesis, the latter co-limited by Rubisco and the orchestrated activity of thylakoid electron transport and the Calvin cycle enzymes. Accordingly, only limited improvements of photosynthesis have been obtained by genetic manipulation of any of these single factors. In addition, improving photosynthesis by genetic manipulation in general reduced WUE, and vice-versa, and in many cases pleiotropic effects appear that cancel out some of the expected benefits. I propose that success in genetic manipulation for simultaneous improvement of photosynthesis and WUE efficiency may take longer than suggested in previous reports, and that it can be achieved only by joint projects addressing multi-gene manipulation for simultaneous alterations of all the limiting factors of photosynthesis, including the often neglected phloem capacity for loading and transport the expected surplus of carbohydrates in plants with improved photosynthesis.
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Affiliation(s)
- J Flexas
- Research Group on Plant Biology under Mediterranean Conditions, Departament de Biologia, Universitat de les Illes Balears, Carretera de Valldemossa Km 7.5, 07122 Palma de Mallorca, Illes Balears, Spain.
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23
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Galmés J, Hermida-Carrera C, Laanisto L, Niinemets Ü. A compendium of temperature responses of Rubisco kinetic traits: variability among and within photosynthetic groups and impacts on photosynthesis modeling. JOURNAL OF EXPERIMENTAL BOTANY 2016; 67:5067-91. [PMID: 27406782 PMCID: PMC5014154 DOI: 10.1093/jxb/erw267] [Citation(s) in RCA: 60] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/06/2023]
Abstract
The present study provides a synthesis of the in vitro and in vivo temperature responses of Rubisco Michaelis-Menten constants for CO2 (Kc) and O2 (Ko), specificity factor (Sc,o) and maximum carboxylase turnover rate (kcatc) for 49 species from all the main photosynthetic kingdoms of life. Novel correction routines were developed for in vitro data to remove the effects of study-to-study differences in Rubisco assays. The compilation revealed differences in the energy of activation (∆Ha) of Rubisco kinetics between higher plants and other photosynthetic groups, although photosynthetic bacteria and algae were under-represented and very few species have been investigated so far. Within plants, the variation in Rubisco temperature responses was related to species' climate and photosynthetic mechanism, with differences in ∆Ha for kcatc among C3 plants from cool and warm environments, and in ∆Ha for kcatc and Kc among C3 and C4 plants. A negative correlation was observed among ∆Ha for Sc/o and species' growth temperature for all data pooled, supporting the convergent adjustment of the temperature sensitivity of Rubisco kinetics to species' thermal history. Simulations of the influence of varying temperature dependences of Rubisco kinetics on Rubisco-limited photosynthesis suggested improved photosynthetic performance of C3 plants from cool habitats at lower temperatures, and C3 plants from warm habitats at higher temperatures, especially at higher CO2 concentration. Thus, variation in Rubisco kinetics for different groups of photosynthetic organisms might need consideration to improve prediction of photosynthesis in future climates. Comparisons between in vitro and in vivo data revealed common trends, but also highlighted a large variability among both types of Rubisco kinetics currently used to simulate photosynthesis, emphasizing the need for more experimental work to fill in the gaps in Rubisco datasets and improve scaling from enzyme kinetics to realized photosynthesis.
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Affiliation(s)
- Jeroni Galmés
- Research Group in Plant Biology under Mediterranean Conditions, Department of Biology, Universitat de les Illes Balears, Carretera de Valldemossa km 7.5, 07122 Palma, Illes Balears, Spain
| | - Carmen Hermida-Carrera
- Research Group in Plant Biology under Mediterranean Conditions, Department of Biology, Universitat de les Illes Balears, Carretera de Valldemossa km 7.5, 07122 Palma, Illes Balears, Spain
| | - Lauri Laanisto
- Institute of Agricultural and Environmental Sciences, Estonian University of Life Sciences, Kreutzwaldi 1, Tartu 51014, Estonia
| | - Ülo Niinemets
- Institute of Agricultural and Environmental Sciences, Estonian University of Life Sciences, Kreutzwaldi 1, Tartu 51014, Estonia Estonian Academy of Sciences, Kohtu 6, 10130 Tallinn, Estonia
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Zaka S, Frak E, Julier B, Gastal F, Louarn G. Intraspecific variation in thermal acclimation of photosynthesis across a range of temperatures in a perennial crop. AOB PLANTS 2016; 8:plw035. [PMID: 27178065 PMCID: PMC4940478 DOI: 10.1093/aobpla/plw035] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/02/2015] [Accepted: 04/27/2016] [Indexed: 05/29/2023]
Abstract
Interest in the thermal acclimation of photosynthesis has been stimulated by the increasing relevance of climate change. However, little is known about intra-specific variations in thermal acclimation and its potential for breeding. In this article, we examined the difference in thermal acclimation between alfalfa (Medicago sativa) cultivars originating from contrasting origins, and sought to analyze the mechanisms in play. A series of experiments was carried out at seven growth temperatures between 5 and 35 °C using four cultivars from temperate and Mediterranean origin. Leaf traits, the photosynthetic rate at 25 °C (A400 (25)), the photosynthetic rate at optimal temperature (A400 (opt)), the thermal optimum of photosynthesis (Topt), and the photosynthetic parameters from the Farqhuar model were determined. Irrespective of cultivar origin, a clear shift in the temperature responses of photosynthesis was observed as a function of growth temperature, affecting thermal optimum of photosynthesis, photosynthetic rate at optimal temperature and photosynthetic rate at 25 °C. For both cultivars, Topt values increased linearly in leaves grown between 5 and 35 °C. Relative homeostasis of A400 (25) and A400 (opt) was found between 10 °C and 30 °C growth temperatures, but sharp declines were recorded at 5 and 35 °C. This homeostasis was achieved in part through modifications to leaf nitrogen content, which increased at extreme temperatures. Significant changes were also recorded regarding nitrogen partitioning in the photosynthetic apparatus and in the temperature dependence of photosynthetic parameters. The cultivars differed only in terms of the temperature response of photosynthetic parameters, with Mediterranean genotypes displaying a greater sensitivity of the maximum rate of Rubisco carboxylation to elevated temperatures. It was concluded that intra-specific variations in the temperature acclimation of photosynthesis exist among alfalfa cultivars, but that Mediterranean genotypes presented no evidence of superior performance at high temperatures.
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Affiliation(s)
- Serge Zaka
- INRA, UR4 URP3F, BP6, F86600 Lusignan, France
| | - Ela Frak
- INRA, UR4 URP3F, BP6, F86600 Lusignan, France
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25
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Satagopan S, Tabita FR. RubisCO selection using the vigorously aerobic and metabolically versatile bacterium Ralstonia eutropha. FEBS J 2016; 283:2869-80. [PMID: 27261087 DOI: 10.1111/febs.13774] [Citation(s) in RCA: 24] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/16/2016] [Revised: 05/06/2016] [Accepted: 06/03/2016] [Indexed: 11/29/2022]
Abstract
UNLABELLED Recapturing atmospheric CO2 is key to reducing global warming and increasing biological carbon availability. Ralstonia eutropha is a biotechnologically useful aerobic bacterium that uses the Calvin-Benson-Bassham (CBB) cycle and the enzyme ribulose 1,5-bisphosphate carboxylase/oxygenase (RubisCO) for CO2 utilization, suggesting that it may be a useful host to bioselect RubisCO molecules with improved CO2 -capture capabilities. A host strain of R. eutropha was constructed for this purpose after deleting endogenous genes encoding two related RubisCOs. This strain could be complemented for CO2 -dependent growth by introducing native or heterologous RubisCO genes. Mutagenesis and suppressor selection identified amino acid substitutions in a hydrophobic region that specifically influences RubisCO's interaction with its substrates, particularly O2 , which competes with CO2 at the active site. Unlike most RubisCOs, the R. eutropha enzyme has evolved to retain optimal CO2 -fixation rates in a fast-growing host, despite the presence of high levels of competing O2 . Yet its structure-function properties resemble those of several commonly found RubisCOs, including the higher plant enzymes, allowing strategies to engineer analogous enzymes. Because R. eutropha can be cultured rapidly under harsh environmental conditions (e.g., with toxic industrial flue gas), in the presence of near saturation levels of oxygen, artificial selection and directed evolution studies in this organism could potentially impact efforts toward improving RubisCO-dependent biological CO2 utilization in aerobic environments. ENZYMES d-ribulose 1,5-bisphosphate carboxylase/oxygenase, EC 4.1.1.39; phosphoribulokinase, EC 2.7.1.19.
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Affiliation(s)
- Sriram Satagopan
- Department of Microbiology, The Ohio State University, Columbus, OH, USA
| | - F Robert Tabita
- Department of Microbiology, The Ohio State University, Columbus, OH, USA
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Flexas J, Díaz-Espejo A, Conesa MA, Coopman RE, Douthe C, Gago J, Gallé A, Galmés J, Medrano H, Ribas-Carbo M, Tomàs M, Niinemets Ü. Mesophyll conductance to CO2 and Rubisco as targets for improving intrinsic water use efficiency in C3 plants. PLANT, CELL & ENVIRONMENT 2016; 39:965-82. [PMID: 26297108 DOI: 10.1111/pce.12622] [Citation(s) in RCA: 111] [Impact Index Per Article: 13.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/10/2014] [Revised: 07/09/2015] [Accepted: 07/26/2015] [Indexed: 05/20/2023]
Abstract
Water limitation is a major global constraint for plant productivity that is likely to be exacerbated by climate change. Hence, improving plant water use efficiency (WUE) has become a major goal for the near future. At the leaf level, WUE is the ratio between photosynthesis and transpiration. Maintaining high photosynthesis under water stress, while improving WUE requires either increasing mesophyll conductance (gm ) and/or improving the biochemical capacity for CO2 assimilation-in which Rubisco properties play a key role, especially in C3 plants at current atmospheric CO2 . The goals of the present analysis are: (1) to summarize the evidence that improving gm and/or Rubisco can result in increased WUE; (2) to review the degree of success of early attempts to genetically manipulate gm or Rubisco; (3) to analyse how gm , gsw and the Rubisco's maximum velocity (Vcmax ) co-vary across different plant species in well-watered and drought-stressed conditions; (4) to examine how these variations cause differences in WUE and what is the overall extent of variation in individual determinants of WUE; and finally, (5) to use simulation analysis to provide a theoretical framework for the possible control of WUE by gm and Rubisco catalytic constants vis-à-vis gsw under water limitations.
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Affiliation(s)
- J Flexas
- Research Group on Plant Biology under Mediterranean Conditions, Departament de Biologia, Universitat de les Illes Balears, Carretera de Valldemossa Km 7.5, 07122, Palma de Mallorca, Illes Balears, Spain
| | - A Díaz-Espejo
- Irrigation and Crop Ecophysiology Group, Instituto de Recursos Naturales y Agrobiología de Sevilla (IRNAS, CSIC), Avenida Reina Mercedes 10, 41012, Sevilla, Spain
| | - M A Conesa
- Research Group on Plant Biology under Mediterranean Conditions, Departament de Biologia, Universitat de les Illes Balears, Carretera de Valldemossa Km 7.5, 07122, Palma de Mallorca, Illes Balears, Spain
| | - R E Coopman
- Ecophysiology Laboratory for Forest Conservation, Instituto de Conservación, Biodiversidad y Territorio, Facultad de Ciencias Forestales y Recursos Naturales, Universidad Austral de Chile, Casilla 567, 5110566, Valdivia, Chile
| | - C Douthe
- Research Group on Plant Biology under Mediterranean Conditions, Departament de Biologia, Universitat de les Illes Balears, Carretera de Valldemossa Km 7.5, 07122, Palma de Mallorca, Illes Balears, Spain
| | - J Gago
- Research Group on Plant Biology under Mediterranean Conditions, Departament de Biologia, Universitat de les Illes Balears, Carretera de Valldemossa Km 7.5, 07122, Palma de Mallorca, Illes Balears, Spain
- Applied Plant and Soil Biology, Faculty of Biology, University of Vigo, 36310, Vigo, Spain
| | - A Gallé
- Bayer CropScience NV, Innovation Center, Technologiepark 38, 9052, Zwijnaarde, Belgium
| | - J Galmés
- Research Group on Plant Biology under Mediterranean Conditions, Departament de Biologia, Universitat de les Illes Balears, Carretera de Valldemossa Km 7.5, 07122, Palma de Mallorca, Illes Balears, Spain
| | - H Medrano
- Research Group on Plant Biology under Mediterranean Conditions, Departament de Biologia, Universitat de les Illes Balears, Carretera de Valldemossa Km 7.5, 07122, Palma de Mallorca, Illes Balears, Spain
| | - M Ribas-Carbo
- Research Group on Plant Biology under Mediterranean Conditions, Departament de Biologia, Universitat de les Illes Balears, Carretera de Valldemossa Km 7.5, 07122, Palma de Mallorca, Illes Balears, Spain
| | - M Tomàs
- Research Group on Plant Biology under Mediterranean Conditions, Departament de Biologia, Universitat de les Illes Balears, Carretera de Valldemossa Km 7.5, 07122, Palma de Mallorca, Illes Balears, Spain
| | - Ü Niinemets
- Institute of Agricultural and Environmental Sciences, Estonian University of Life Sciences, Kreutzwaldi 1, Tartu, 51014, Estonia
- Estonian Academy of Sciences, Kohtu 6, 10130, Tallinn, Estonia
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27
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Siqueira AS, Lima ARJ, Dall'Agnol LT, de Azevedo JSN, da Silva Gonçalves Vianez JL, Gonçalves EC. Comparative modeling and molecular dynamics suggest high carboxylase activity of the Cyanobium sp. CACIAM14 RbcL protein. J Mol Model 2016; 22:68. [PMID: 26936271 DOI: 10.1007/s00894-016-2943-y] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/05/2015] [Accepted: 02/22/2016] [Indexed: 11/26/2022]
Abstract
Rubisco catalyzes the first step reaction in the carbon fixation pathway, bonding atmospheric CO2/O2 to ribulose 1,5-bisphosphate; it is therefore considered one of the most important enzymes in the biosphere. Genetic modifications to increase the carboxylase activity of rubisco are a subject of great interest to agronomy and biotechnology, since this could increase the productivity of biomass in plants, algae and cyanobacteria and give better yields in crops and biofuel production. Thus, the aim of this study was to characterize in silico the catalytic domain of the rubisco large subunit (rbcL gene) of Cyanobium sp. CACIAM14, and identify target sites to improve enzyme affinity for ribulose 1,5-bisphosphate. A three-dimensional model was built using MODELLER 9.14, molecular dynamics was used to generate a 100 ns trajectory by AMBER12, and the binding free energy was calculated using MM-PBSA, MM-GBSA and SIE methods with alanine scanning. The model obtained showed characteristics of form-I rubisco, with 15 beta sheets and 19 alpha helices, and maintained the highly conserved catalytic site encompassing residues Lys175, Lys177, Lys201, Asp203, and Glu204. The binding free energy of the enzyme-substrate complexation of Cyanobium sp. CACIAM14 showed values around -10 kcal mol(-1) using the SIE method. The most important residues for the interaction with ribulose 1,5-bisphosphate were Arg295 followed by Lys334. The generated model was successfully validated, remaining stable during the whole simulation, and demonstrated characteristics of enzymes with high carboxylase activity. The binding analysis revealed candidates for directed mutagenesis sites to improve rubisco's affinity.
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Affiliation(s)
- Andrei Santos Siqueira
- Laboratório de Tecnologia Biomolecular, Instituto de Ciências Biológicas, Universidade Federal do Pará, Belém, PA, Brazil.
| | - Alex Ranieri Jerônimo Lima
- Laboratório de Tecnologia Biomolecular, Instituto de Ciências Biológicas, Universidade Federal do Pará, Belém, PA, Brazil
| | - Leonardo Teixeira Dall'Agnol
- Laboratório de Tecnologia Biomolecular, Instituto de Ciências Biológicas, Universidade Federal do Pará, Belém, PA, Brazil
| | | | | | - Evonnildo Costa Gonçalves
- Laboratório de Tecnologia Biomolecular, Instituto de Ciências Biológicas, Universidade Federal do Pará, Belém, PA, Brazil.
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Jauregui I, Aparicio-Tejo PM, Avila C, Rueda-López M, Aranjuelo I. Root and shoot performance of Arabidopsis thaliana exposed to elevated CO2: A physiologic, metabolic and transcriptomic response. JOURNAL OF PLANT PHYSIOLOGY 2015; 189:65-76. [PMID: 26519814 DOI: 10.1016/j.jplph.2015.09.012] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/15/2015] [Revised: 04/24/2015] [Accepted: 09/03/2015] [Indexed: 05/11/2023]
Abstract
The responsiveness of C3 plants to raised atmospheric [CO2] levels has been frequently described as constrained by photosynthetic downregulation. The main goal of the current study was to characterize the shoot-root relationship and its implications in plant responsiveness under elevated [CO2] conditions. For this purpose, Arabidopsis thaliana plants were exposed to elevated [CO2] (800ppm versus 400ppm [CO2]) and fertilized with a mixed (NH4NO3) nitrogen source. Plant growth, physiology, metabolite and transcriptomic characterizations were carried out at the root and shoot levels. Plant growth under elevated [CO2] conditions was doubled due to increased photosynthetic rates and gas exchange measurements revealed that these plants maintain higher photosynthetic rates over extended periods of time. This positive response of photosynthetic rates to elevated [CO2] was caused by the maintenance of leaf protein and Rubisco concentrations at control levels alongside enhanced energy efficiency. The increased levels of leaf carbohydrates, organic acids and amino acids supported the augmented respiration rates of plants under elevated [CO2]. A transcriptomic analysis allowed the identification of photoassimilate allocation and remobilization as fundamental process used by the plants to maintain the outstanding photosynthetic performance. Moreover, based on the relationship between plant carbon status and hormone functioning, the transcriptomic analyses provided an explanation of why phenology accelerates under elevated [CO2] conditions.
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Affiliation(s)
- Iván Jauregui
- Dpto Ciencias del Medio Natural, Universidad Pública de Navarra, Campus de Arrosadía, E-31192 Mutilva Baja, Spain; Instituto de Agrobiotecnología (IdAB), Universidad Pública de Navarra-CSIC-Gobierno de Navarra, Campus de Arrosadía, E-31192 Mutilva Baja, Spain.
| | - Pedro M Aparicio-Tejo
- Dpto Ciencias del Medio Natural, Universidad Pública de Navarra, Campus de Arrosadía, E-31192 Mutilva Baja, Spain; Instituto de Agrobiotecnología (IdAB), Universidad Pública de Navarra-CSIC-Gobierno de Navarra, Campus de Arrosadía, E-31192 Mutilva Baja, Spain
| | - Concepción Avila
- Biología Molecular y Bioquímica, Instituto Andaluz de Biología, Unidad Asociada UMA-CSIC, Universidad de Málaga, Campus Universitario de Teatinos, E-29071 Málaga, Spain
| | - Marina Rueda-López
- Biología Molecular y Bioquímica, Instituto Andaluz de Biología, Unidad Asociada UMA-CSIC, Universidad de Málaga, Campus Universitario de Teatinos, E-29071 Málaga, Spain
| | - Iker Aranjuelo
- Instituto de Agrobiotecnología (IdAB), Universidad Pública de Navarra-CSIC-Gobierno de Navarra, Campus de Arrosadía, E-31192 Mutilva Baja, Spain; Dpto Biología Vegetal, Universidad del País Vasco, Barrio Sarriena, s/n, E-48940 Leioa, Vizkaia, Spain
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Niinemets Ü, Keenan TF, Hallik L. A worldwide analysis of within-canopy variations in leaf structural, chemical and physiological traits across plant functional types. THE NEW PHYTOLOGIST 2015; 205:973-993. [PMID: 25318596 PMCID: PMC5818144 DOI: 10.1111/nph.13096] [Citation(s) in RCA: 162] [Impact Index Per Article: 18.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/01/2014] [Accepted: 09/04/2014] [Indexed: 05/19/2023]
Abstract
Extensive within-canopy light gradients importantly affect the photosynthetic productivity of leaves in different canopy positions and lead to light-dependent increases in foliage photosynthetic capacity per area (AA). However, the controls on AA variations by changes in underlying traits are poorly known. We constructed an unprecedented worldwide database including 831 within-canopy gradients with standardized light estimates for 304 species belonging to major vascular plant functional types, and analyzed within-canopy variations in 12 key foliage structural, chemical and physiological traits by quantitative separation of the contributions of different traits to photosynthetic acclimation. Although the light-dependent increase in AA is surprisingly similar in different plant functional types, they differ fundamentally in the share of the controls on AA by constituent traits. Species with high rates of canopy development and leaf turnover, exhibiting highly dynamic light environments, actively change AA by nitrogen reallocation among and partitioning within leaves. By contrast, species with slow leaf turnover exhibit a passive AA acclimation response, primarily determined by the acclimation of leaf structure to growth light. This review emphasizes that different combinations of traits are responsible for within-canopy photosynthetic acclimation in different plant functional types, and solves an old enigma of the role of mass- vs area-based traits in vegetation acclimation.
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Affiliation(s)
- Ülo Niinemets
- Estonian University of Life Sciences, Kreutzwaldi 1, 51014 Tartu, Estonia
- Estonian Academy of Sciences, Kohtu 6, 10130 Tallinn, Estonia
- Corresponding Author, , Tel: +372 53457189
| | - Trevor F. Keenan
- Department of Biological Sciences, Macquarie University, North Ryde, NSW 2109, Australia
| | - Lea Hallik
- Estonian University of Life Sciences, Kreutzwaldi 1, 51014 Tartu, Estonia
- Tartu Observatory, Tõravere, 61602, Estonia
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30
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Galmés J, Kapralov MV, Copolovici LO, Hermida-Carrera C, Niinemets Ü. Temperature responses of the Rubisco maximum carboxylase activity across domains of life: phylogenetic signals, trade-offs, and importance for carbon gain. PHOTOSYNTHESIS RESEARCH 2015; 123:183-201. [PMID: 25515770 DOI: 10.1007/s11120-014-0067-8] [Citation(s) in RCA: 52] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/08/2014] [Accepted: 12/09/2014] [Indexed: 05/09/2023]
Abstract
Temperature response of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) catalytic properties directly determines the CO2 assimilation capacity of photosynthetic organisms as well as their survival in environments with different thermal conditions. Despite unquestionable importance of Rubisco, the comprehensive analysis summarizing temperature responses of Rubisco traits across lineages of carbon-fixing organisms is lacking. Here, we present a review of the temperature responses of Rubisco carboxylase specific activity (c(cat)(c)) within and across domains of life. In particular, we consider the variability of temperature responses, and their ecological, physiological, and evolutionary controls. We observed over two-fold differences in the energy of activation (ΔH(a)) among different groups of photosynthetic organisms, and found significant differences between C3 plants from cool habitats, C3 plants from warm habitats and C4 plants. According to phylogenetically independent contrast analysis, ΔH(a) was not related to the species optimum growth temperature (T growth), but was positively correlated with Rubisco specificity factor (S(c/o)) across all organisms. However, when only land plants were analyzed, ΔH(a) was positively correlated with both T(growth) and S(c/o), indicating different trends for these traits in plants versus unicellular aquatic organisms, such as algae and bacteria. The optimum temperature (T(opt)) for k(cat)(c) correlated with S(c/o) for land plants and for all organisms pooled, but the effect of T growth on T(opt) was driven by species phylogeny. The overall phylogenetic signal was significant for all analyzed parameters, stressing the importance of considering the evolutionary framework and accounting for shared ancestry when deciphering relationships between Rubisco kinetic parameters. We argue that these findings have important implications for improving global photosynthesis models.
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Affiliation(s)
- J Galmés
- Research Group in Plant Biology Under Mediterranean Conditions, Department of Biology, Universitat de les Illes Balears, Carretera de Valldemossa km 7.5, 07122, Palma, Illes Balears, Spain,
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31
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Flexas J, Carriquí M, Coopman RE, Gago J, Galmés J, Martorell S, Morales F, Diaz-Espejo A. Stomatal and mesophyll conductances to CO₂ in different plant groups: underrated factors for predicting leaf photosynthesis responses to climate change? PLANT SCIENCE : AN INTERNATIONAL JOURNAL OF EXPERIMENTAL PLANT BIOLOGY 2014; 226:41-8. [PMID: 25113449 DOI: 10.1016/j.plantsci.2014.06.011] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/08/2013] [Revised: 06/08/2014] [Accepted: 06/13/2014] [Indexed: 05/25/2023]
Abstract
The climate change conditions predicted for the end of the current century are expected to have an impact on the performance of plants under natural conditions. The variables which are foreseen to have a larger effect are increased CO2 concentration and temperature. Although it is generally considered CO2 assimilation rate could be increased by the increasing levels of CO2, it has been reported in previous studies that acclimation to high CO2 results in reductions of physiological parameters involved in photosynthesis, like the maximum carboxylation rate (Vc,max), stomatal conductance (gs) and mesophyll conductance to CO2 (gm). On the one hand, most of the previous modeling efforts have neglected the potential role played by the acclimation of gm to high CO2 and temperature. On the other hand, the effect of climate change on plant clades other than angiosperms, like ferns, has received little attention, and there are no studies evaluating the potential impact of increasing CO2 and temperature on these species. In this study we predicted responses of several representative species among angiosperms, gymnosperms and ferns to increasing CO2 and temperature. Our results show that species with lower photosynthetic capacity - such as some ferns and gymnosperms - would be proportionally more favored under these foreseen environmental conditions. The main reason for this difference is the lower diffusion limitation imposed by gs and gm in plants having high capacity for photosynthesis among the angiosperms, which reduces the positive effect of increasing CO2. However, this apparent advantage of low-diffusion species would be canceled if the two conductances - gs and gm - acclimate and are down regulated to high CO2, which is basically unknown, especially for gymnosperms and ferns. Hence, for a better understanding of different plant responses to future climate, studies are urged in which the actual photosynthetic response/acclimation to increased CO2 and temperature of ferns, gymnosperms and other under-evaluated plant groups is assessed.
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Affiliation(s)
- Jaume Flexas
- Research Group on Plant Biology under Mediterranean Conditions, Departament de Biologia, Universitat de les Illes Balears, Carretera de Valldemossa Km 7.5, 07122 Palma de Mallorca, Illes Balears, Spain.
| | - Marc Carriquí
- Research Group on Plant Biology under Mediterranean Conditions, Departament de Biologia, Universitat de les Illes Balears, Carretera de Valldemossa Km 7.5, 07122 Palma de Mallorca, Illes Balears, Spain
| | - Rafael E Coopman
- Laboratorio de Ecofisiología para la Conservación de Bosques, Instituto de Conservación, Biodiversidad y Territorio, Facultad de Ciencias Forestales y Recursos Naturales, Universidad Austral de Chile, Casilla 567, Valdivia, Chile
| | - Jorge Gago
- Applied Plant and Soil Biology, Faculty of Biology, University of Vigo, 36310 Vigo, Spain
| | - Jeroni Galmés
- Research Group on Plant Biology under Mediterranean Conditions, Departament de Biologia, Universitat de les Illes Balears, Carretera de Valldemossa Km 7.5, 07122 Palma de Mallorca, Illes Balears, Spain
| | - Sebastià Martorell
- Research Group on Plant Biology under Mediterranean Conditions, Departament de Biologia, Universitat de les Illes Balears, Carretera de Valldemossa Km 7.5, 07122 Palma de Mallorca, Illes Balears, Spain
| | - Fermín Morales
- Estación Experimental de Aula Dei (EEAD), CSIC, Dpto. Nutrición Vegetal, Apdo. 13034, E-50080 Zaragoza, Spain
| | - Antonio Diaz-Espejo
- Irrigation and Crop Ecophysiology Group, Instituto de Recursos Naturales y Agrobiología de Sevilla (IRNAS, CSIC), Avenida Reina Mercedes 10, 41012 Sevilla, Spain
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32
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Galmés J, Kapralov MV, Andralojc PJ, Conesa MÀ, Keys AJ, Parry MAJ, Flexas J. Expanding knowledge of the Rubisco kinetics variability in plant species: environmental and evolutionary trends. PLANT, CELL & ENVIRONMENT 2014; 37:1989-2001. [PMID: 24689692 DOI: 10.1111/pce.12335] [Citation(s) in RCA: 102] [Impact Index Per Article: 10.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/05/2014] [Revised: 03/19/2014] [Accepted: 03/22/2014] [Indexed: 05/18/2023]
Abstract
The present study characterizes the kinetic properties of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) from 28 terrestrial plant species, representing different phylogenetic lineages, environmental adaptations and photosynthetic mechanisms. Our findings confirm that past atmospheric CO(2)/O(2) ratio changes and present environmental pressures have influenced Rubisco kinetics. One evolutionary adaptation to a decreasing atmospheric CO(2)/O(2) ratio has been an increase in the affinity of Rubisco for CO(2) (Kc falling), and a consequent decrease in the velocity of carboxylation (kcat (c)), which in turn has been ameliorated by an increase in the proportion of leaf protein accounted by Rubisco. The trade-off between K(c) and k(cat)(c) was not universal among the species studied and deviations from this relationship occur in extant forms of Rubisco. In species adapted to particular environments, including carnivorous plants, crassulacean acid metabolism species and C(3) plants from aquatic and arid habitats, Rubisco has evolved towards increased efficiency, as demonstrated by a higher k(cat)(c)/K(c) ratio. This variability in kinetics was related to the amino acid sequence of the Rubisco large subunit. Phylogenetic analysis identified 13 residues under positive selection during evolution towards specific Rubisco kinetic parameters. This crucial information provides candidate amino acid replacements, which could be implemented to optimize crop photosynthesis under a range of environmental conditions.
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Affiliation(s)
- Jeroni Galmés
- Research Group on Plant Biology under Mediterranean Conditions, Universitat de les Illes Balears, Palma, Spain
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