1
|
Romero-Munar A, Muñoz-Carrasco M, Balestrini R, De Rose S, Giovannini L, Aroca R, Ruiz-Lozano JM. Differential root and cell regulation of maize aquaporins by the arbuscular mycorrhizal symbiosis highlights its role in plant water relations. PLANT, CELL & ENVIRONMENT 2024; 47:4337-4353. [PMID: 38965812 DOI: 10.1111/pce.15029] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/02/2024] [Revised: 06/10/2024] [Accepted: 06/24/2024] [Indexed: 07/06/2024]
Abstract
This study aims to elucidate if the regulation of plant aquaporins by the arbuscular mycorrhizal (AM) symbiosis occurs only in roots or cells colonized by the fungus or at whole root system. Maize plants were cultivated in a split-root system, with half of the root system inoculated with the AM fungus and the other half uninoculated. Plant growth and hydraulic parameters were measured and aquaporin gene expression was determined in each root fraction and in microdissected cells. Under well-watered conditions, the non-colonized root fractions of AM plants grew more than the colonized root fraction. Total osmotic and hydrostatic root hydraulic conductivities (Lo and Lpr) were higher in AM plants than in non-mycorrhizal plants. The expression of most maize aquaporin genes analysed was different in the mycorrhizal root fraction than in the non-mycorrhizal root fraction of AM plants. At the cellular level, differential aquaporin expression in AM-colonized cells and in uncolonized cells was also observed. Results indicate the existence of both, local and systemic regulation of plant aquaporins by the AM symbiosis and suggest that such regulation is related to the availability of water taken up by fungal hyphae in each root fraction and to the plant need of water mobilization.
Collapse
Affiliation(s)
- Antonia Romero-Munar
- Departmento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (CSIC), Granada, Spain
| | - María Muñoz-Carrasco
- Departmento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (CSIC), Granada, Spain
| | - Raffaella Balestrini
- Istituto per la Protezione Sostenibile delle Piante (IPSP), Consiglio Nazionale delle Ricerche (CNR), Torino, Italy
| | - Silvia De Rose
- Istituto per la Protezione Sostenibile delle Piante (IPSP), Consiglio Nazionale delle Ricerche (CNR), Torino, Italy
| | - Luca Giovannini
- Istituto per la Protezione Sostenibile delle Piante (IPSP), Consiglio Nazionale delle Ricerche (CNR), Torino, Italy
| | - Ricardo Aroca
- Departmento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (CSIC), Granada, Spain
| | - Juan Manuel Ruiz-Lozano
- Departmento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (CSIC), Granada, Spain
| |
Collapse
|
2
|
Xia Z, Zhang S, Guo H, Gao X, Hao K, Dong X, Guo J, Li J, Wang Z, An M, Wu Y, Zhou X. N 6-Methyladenosine RNA Modification Regulates Maize Resistance to Maize Chlorotic Mottle Virus Infection. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2024; 72:21935-21945. [PMID: 39311423 DOI: 10.1021/acs.jafc.4c04832] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/03/2024]
Abstract
Maize chlorotic mottle virus (MCMV) is one of the main viruses causing significant losses in maize. N6-methyladenosine (m6A) RNA modification has been proven to play important regulatory roles in plant development and stress response. In this study, we found that MCMV infection significantly up-regulated the m6A level in maize, and methylated RNA immunoprecipitation sequencing (MeRIP-seq) and RNA sequencing (RNA-seq) were performed to investigate the distribution of m6A modified peaks and gene expression patterns in MCMV-infected maize plants. The results showed that 1325 differentially methylated genes (DMGs) and 47 differentially methylated and expressed genes (DMEGs) were identified and analyzed. Moreover, the results of virus-induced gene silencing (VIGS) assays showed that ZmECT18 and ZmGST31 were required for MCMV infection, while silencing of ZmMTC, ZmSCI1 or ZmTIP1 significantly promoted MCMV infection in maize. Our findings provided novel insights into the regulatory roles of m6A modification in maize response to MCMV infection.
Collapse
Affiliation(s)
- Zihao Xia
- Liaoning Key Laboratory of Plant Pathology, College of Plant Protection, Shenyang Agricultural University, Shenyang 110866, China
- Key Laboratory of Major Agricultural Invasion Biological Monitoring and Control of Shenyang, Shenyang 110866, China
| | - Sijia Zhang
- Liaoning Key Laboratory of Plant Pathology, College of Plant Protection, Shenyang Agricultural University, Shenyang 110866, China
- Key Laboratory of Major Agricultural Invasion Biological Monitoring and Control of Shenyang, Shenyang 110866, China
| | - Huiyan Guo
- Liaoning Key Laboratory of Plant Pathology, College of Plant Protection, Shenyang Agricultural University, Shenyang 110866, China
- Key Laboratory of Major Agricultural Invasion Biological Monitoring and Control of Shenyang, Shenyang 110866, China
| | - Xinran Gao
- Liaoning Key Laboratory of Plant Pathology, College of Plant Protection, Shenyang Agricultural University, Shenyang 110866, China
- Key Laboratory of Major Agricultural Invasion Biological Monitoring and Control of Shenyang, Shenyang 110866, China
| | - Kaiqiang Hao
- Liaoning Key Laboratory of Plant Pathology, College of Plant Protection, Shenyang Agricultural University, Shenyang 110866, China
- Key Laboratory of Major Agricultural Invasion Biological Monitoring and Control of Shenyang, Shenyang 110866, China
| | - Xue Dong
- Liaoning Key Laboratory of Plant Pathology, College of Plant Protection, Shenyang Agricultural University, Shenyang 110866, China
- Key Laboratory of Major Agricultural Invasion Biological Monitoring and Control of Shenyang, Shenyang 110866, China
| | - Jinxiu Guo
- Liaoning Key Laboratory of Plant Pathology, College of Plant Protection, Shenyang Agricultural University, Shenyang 110866, China
- Key Laboratory of Major Agricultural Invasion Biological Monitoring and Control of Shenyang, Shenyang 110866, China
| | - Jian Li
- Liaoning Key Laboratory of Plant Pathology, College of Plant Protection, Shenyang Agricultural University, Shenyang 110866, China
- Key Laboratory of Major Agricultural Invasion Biological Monitoring and Control of Shenyang, Shenyang 110866, China
| | - Zhiping Wang
- Liaoning Key Laboratory of Plant Pathology, College of Plant Protection, Shenyang Agricultural University, Shenyang 110866, China
- Key Laboratory of Major Agricultural Invasion Biological Monitoring and Control of Shenyang, Shenyang 110866, China
| | - Mengnan An
- Liaoning Key Laboratory of Plant Pathology, College of Plant Protection, Shenyang Agricultural University, Shenyang 110866, China
- Key Laboratory of Major Agricultural Invasion Biological Monitoring and Control of Shenyang, Shenyang 110866, China
| | - Yuanhua Wu
- Liaoning Key Laboratory of Plant Pathology, College of Plant Protection, Shenyang Agricultural University, Shenyang 110866, China
- Key Laboratory of Major Agricultural Invasion Biological Monitoring and Control of Shenyang, Shenyang 110866, China
| | - Xueping Zhou
- State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing 100193, China
- State Key Laboratory of Rice Biology, Institute of Biotechnology, Zhejiang University, Hangzhou, 310058, China
| |
Collapse
|
3
|
Zhang W, Yang S, Feng Y, Liang B, Li C, Li Q, Zeng Z, Ji X, Liu J, Wang Y. The tonoplast-localized OsTIP2;1 is involved in aluminum detoxification in rice. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2024; 215:109063. [PMID: 39208475 DOI: 10.1016/j.plaphy.2024.109063] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/13/2024] [Revised: 08/12/2024] [Accepted: 08/20/2024] [Indexed: 09/04/2024]
Abstract
Aluminum (Al) stress is a significant issue in acidic soils, severely affecting crop growth and yield. Rice is notably resilient to Al toxicity, yet the internal tolerance mechanisms remain inadequately addressed. Here, we examined the role of OsTIP2;1, a tonoplast-bound intrinsic protein (TIP), in rice's internal Al detoxification. Our findings reveal that OsTIP2;1 expression was quickly and explicitly activated by Al ions in roots but not in shoots. The OsTIP2;1-GFP protein localizes to the tonoplast in plant and yeast cells. Non-functional ostip2;1 rice mutants were more vulnerable to Al toxicity. In the roots, the ostip2;1 mutants exhibited considerably lower levels of Al in the cell sap, primarily the vacuolar contents, than in the wild-type plant. Moreover, the ostip2;1 mutants showed reduced Al accumulation in the roots but increased translocation to the shoots. Heterologous expression of tonoplast-localized OsTIP2;1 in yeast led to enhanced Al tolerance, suggesting that OsTIP2;1 facilitates Al sequestration to the vacuole. These findings indicate that OsTIP2;1 mediates internal detoxification by transporting Al into the vacuole in the root and restricting its transport to above-ground tissues, thus contributing to Al resistance in rice.
Collapse
Affiliation(s)
- Weiyin Zhang
- School of Environmental Science and Engineering, Guangzhou University, Guangzhou, Guangdong, China; School of Life Sciences, Guangzhou University, Guangzhou, Guangdong, China
| | - Shaohua Yang
- Institute of Biotechnology, Fujian Academy of Agricultural Sciences, Fuzhou, Fujian, China
| | - Yimeng Feng
- School of Environmental Science and Engineering, Guangzhou University, Guangzhou, Guangdong, China
| | - Bixia Liang
- School of Environmental Science and Engineering, Guangzhou University, Guangzhou, Guangdong, China
| | - Chune Li
- School of Environmental Science and Engineering, Guangzhou University, Guangzhou, Guangdong, China
| | - Qian Li
- School of Environmental Science and Engineering, Guangzhou University, Guangzhou, Guangdong, China
| | - Zhenshun Zeng
- School of Environmental Science and Engineering, Guangzhou University, Guangzhou, Guangdong, China
| | - Xiyue Ji
- School of Environmental Science and Engineering, Guangzhou University, Guangzhou, Guangdong, China
| | - Jiping Liu
- Robert W. Holley Center, US Department of Agriculture, Agricultural Research Service, Cornell University, Ithaca, NY, USA; Plant Breeding and Genetics Section, School of Integrative Plant Sciences, Cornell University, Ithaca, NY, USA.
| | - Yuqi Wang
- School of Environmental Science and Engineering, Guangzhou University, Guangzhou, Guangdong, China; Robert W. Holley Center, US Department of Agriculture, Agricultural Research Service, Cornell University, Ithaca, NY, USA.
| |
Collapse
|
4
|
Bakala HS, Devi J, Singh G, Singh I. Drought and heat stress: insights into tolerance mechanisms and breeding strategies for pigeonpea improvement. PLANTA 2024; 259:123. [PMID: 38622376 DOI: 10.1007/s00425-024-04401-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/13/2024] [Accepted: 03/29/2024] [Indexed: 04/17/2024]
Abstract
MAIN CONCLUSION Pigeonpea has potential to foster sustainable agriculture and resilience in evolving climate change; understanding bio-physiological and molecular mechanisms of heat and drought stress tolerance is imperative to developing resilience cultivars. Pigeonpea is an important legume crop that has potential resilience in the face of evolving climate scenarios. However, compared to other legumes, there has been limited research on abiotic stress tolerance in pigeonpea, particularly towards drought stress (DS) and heat stress (HS). To address this gap, this review delves into the genetic, physiological, and molecular mechanisms that govern pigeonpea's response to DS and HS. It emphasizes the need to understand how this crop combats these stresses and exhibits different types of tolerance and adaptation mechanisms through component traits. The current article provides a comprehensive overview of the complex interplay of factors contributing to the resilience of pigeonpea under adverse environmental conditions. Furthermore, the review synthesizes information on major breeding techniques, encompassing both conventional methods and modern molecular omics-assisted tools and techniques. It highlights the potential of genomics and phenomics tools and their pivotal role in enhancing adaptability and resilience in pigeonpea. Despite the progress made in genomics, phenomics and big data analytics, the complexity of drought and heat tolerance in pigeonpea necessitate continuous exploration at multi-omic levels. High-throughput phenotyping (HTP) is crucial for gaining insights into perplexed interactions among genotype, environment, and management practices (GxExM). Thus, integration of advanced technologies in breeding programs is critical for developing pigeonpea varieties that can withstand the challenges posed by climate change. This review is expected to serve as a valuable resource for researchers, providing a deeper understanding of the mechanisms underlying abiotic stress tolerance in pigeonpea and offering insights into modern breeding strategies that can contribute to the development of resilient varieties suited for changing environmental conditions.
Collapse
Affiliation(s)
- Harmeet Singh Bakala
- Department of Plant Breeding and Genetics, Punjab Agricultural University, Ludhiana, Punjab, 141004, India
| | - Jomika Devi
- Department of Plant Breeding and Genetics, Punjab Agricultural University, Ludhiana, Punjab, 141004, India
| | - Gurjeet Singh
- Department of Plant Breeding and Genetics, Punjab Agricultural University, Ludhiana, Punjab, 141004, India.
- Texas A&M University, AgriLife Research Center, Beaumont, TX, 77713, USA.
| | - Inderjit Singh
- Department of Plant Breeding and Genetics, Punjab Agricultural University, Ludhiana, Punjab, 141004, India
| |
Collapse
|
5
|
Kong W, Huang H, Du W, Jiang Z, Luo Y, Yi D, Yang G, Pang Y. Overexpression of MsNIP2 improves salinity tolerance in Medicago sativa. JOURNAL OF PLANT PHYSIOLOGY 2024; 295:154207. [PMID: 38430574 DOI: 10.1016/j.jplph.2024.154207] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/16/2023] [Revised: 02/24/2024] [Accepted: 02/24/2024] [Indexed: 03/04/2024]
Abstract
Alfalfa (Medicago sativa) is one of the most widely cultivated forage crops in the world. However, alfalfa yield and quality are adversely affected by salinity stress. Nodulin 26-like intrinsic proteins (NIPs) play essential roles in water and small molecules transport and response to salt stress. Here, we isolated a salt stress responsive MsNIP2 gene and demonstrated its functions by overexpression in alfalfa. The open reading frame of MsNIP2 is 816 bp in length, and it encodes 272 amino acids. It has six transmembrane domains and two NPA motifs. MsNIP2 showed high identity to other known NIP proteins, and its tertiary model was similar to the crystal structure of OsNIP2-1 (7cjs) tetramer. Subcellular localization analysis showed that MsNIP2 protein fused with green fluorescent protein (GFP) was localized to the plasma membrane. Transgenic alfalfa lines overexpressing MsNIP2 showed significantly higher height and branch number compared with the non-transgenic control. The POD and CAT activity of the transgenic alfalfa lines was significantly increased and their MDA content was notably reduced compared with the control group under the treatment of NaCl. The transgenic lines showed higher capability in scavenging oxygen radicals with lighter NBT staining than the control under salt stress. The transgenic lines showed relative lower water loss rate and electrolyte leakage, but relatively higher Na+ content than the control line under salt stress. The relative expression levels of abiotic-stress-related genes (MsHSP23, MsCOR47, MsATPase, and MsRD2) in three transgenic lines were compared with the control, among them, only the expression of MsCOR47 was up-regulated. Consequently, this study offers a novel perspective for exploring the function of MsNIP2 in improving salt tolerance of alfalfa.
Collapse
Affiliation(s)
- Weiye Kong
- Grassland Agri-Husbandry Research Center, College of Grassland Science, Qingdao Agricultural University, Qingdao, China; Institute of Animal Science, Chinese Academy of Agricultural Sciences, Beijing, 100193, China
| | - Haijun Huang
- Institute of Animal Science, Chinese Academy of Agricultural Sciences, Beijing, 100193, China
| | - Wenxuan Du
- Institute of Animal Science, Chinese Academy of Agricultural Sciences, Beijing, 100193, China
| | - Zhihu Jiang
- West Arid Region Grassland Resource and Ecology Key Laboratory, College of Grassland and Environmental Sciences, Xinjiang Agricultural University, Urumqi, 830052, China
| | - Yijing Luo
- Grassland Agri-Husbandry Research Center, College of Grassland Science, Qingdao Agricultural University, Qingdao, China
| | - Dengxia Yi
- Institute of Animal Science, Chinese Academy of Agricultural Sciences, Beijing, 100193, China.
| | - Guofeng Yang
- Grassland Agri-Husbandry Research Center, College of Grassland Science, Qingdao Agricultural University, Qingdao, China.
| | - Yongzhen Pang
- Institute of Animal Science, Chinese Academy of Agricultural Sciences, Beijing, 100193, China.
| |
Collapse
|
6
|
Zhou X, Yi D, Ma L, Wang X. Genome-wide analysis and expression of the aquaporin gene family in Avena sativa L. FRONTIERS IN PLANT SCIENCE 2024; 14:1305299. [PMID: 38312362 PMCID: PMC10836146 DOI: 10.3389/fpls.2023.1305299] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/01/2023] [Accepted: 12/19/2023] [Indexed: 02/06/2024]
Abstract
Background Oat (Avena sativa L.) belongs to the early maturity grass subfamily of the Gramineae subfamily oats (Avena) and has excellent characteristics, such as tolerance to barrenness, salt, cold, and drought. Aquaporin (AQP) proteins belong to the major intrinsic protein (MIP) superfamily, are widely involved in plant growth and development, and play an important role in abiotic stress responses. To date, previous studies have not identified or analyzed the AsAQP gene family system, and functional studies of oat AQP genes in response to drought, cold, and salt stress have not been performed. Methods In this study, AQP genes (AsAQP) were identified from the oat genome, and various bioinformatics data on the AQP gene family, gene structure, gene replication, promoters and regulatory networks were analyzed. Quantitative real-time PCR technology was used to verify the expression patterns of the AQP gene family in different oat tissues under different abiotic stresses. Results In this study, a total of 45 AQP genes (AsAQP) were identified from the oat reference genome. According to a phylogenetic analysis, 45 AsAQP were divided into 4 subfamilies (PIP, SIP, NIP, and TIP). Among the 45 AsAQP, 23 proteins had interactions, and among these, 5AG0000633.1 had the largest number of interacting proteins. The 20 AsAQP genes were expressed in all tissues, and their expression varied greatly among different tissues and organs. All 20 AsAQP genes responded to salt, drought and cold stress. The NIP subfamily 6Ag0000836.1 gene was significantly upregulated under different abiotic stresses and could be further verified as a key candidate gene. Conclusion The findings of this study provide a comprehensive list of members and their sequence characteristics of the AsAQP protein family, laying a solid theoretical foundation for further functional analysis of AsAQP in oats. This research also offers valuable reference for the creation of stress-tolerant oat varieties through genetic engineering techniques.
Collapse
Affiliation(s)
| | | | - Lin Ma
- Institute of Animal Sciences, Chinese Academy of Agricultural Sciences, Beijing, China
| | - Xuemin Wang
- Institute of Animal Sciences, Chinese Academy of Agricultural Sciences, Beijing, China
| |
Collapse
|
7
|
Jin R, Yan M, Li G, Liu M, Zhao P, Zhang Z, Zhang Q, Zhu X, Wang J, Yu Y, Zhang A, Yang J, Tang Z. Comparative physiological and transcriptome analysis between potassium-deficiency tolerant and sensitive sweetpotato genotypes in response to potassium-deficiency stress. BMC Genomics 2024; 25:61. [PMID: 38225545 PMCID: PMC10789036 DOI: 10.1186/s12864-023-09939-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/19/2023] [Accepted: 12/25/2023] [Indexed: 01/17/2024] Open
Abstract
BACKGROUND Sweetpotato is a typical ''potassium (K+) favoring'' food crop, which root differentiation process needs a large supply of potassium fertilizer and determine the final root yield. To further understand the regulatory network of the response to low potassium stress, here we analyze physiological and biochemical characteristics, and investigated root transcriptional changes in two sweetpotato genotypes, namely, - K tolerant "Xu32" and - K susceptible"NZ1". RESULT We found Xu32 had the higher capability of K+ absorption than NZ1 with better growth performance, higher net photosynthetic rate and higher chlorophyll contents under low potassium stress, and identified 889 differentially expressed genes (DEGs) in Xu32, 634 DEGs in NZ1, 256 common DEGs in both Xu32 and NZ1. The Gene Ontology (GO) term in molecular function enrichment analysis revealed that the DEGs under low K+ stress are predominately involved in catalytic activity, binding, transporter activity and antioxidant activity. Moreover, the more numbers of identified DEGs in Xu32 than that in NZ1 responded to K+-deficiency belong to the process of photosynthesis, carbohydrate metabolism, ion transport, hormone signaling, stress-related and antioxidant system may result in different ability to K+-deficiency tolerance. The unique genes in Xu32 may make a great contribution to enhance low K+ tolerance, and provide useful information for the molecular regulation mechanism of K+-deficiency tolerance in sweetpotato. CONCLUSIONS The common and distinct expression pattern between the two sweetpotato genotypes illuminate a complex mechanism response to low potassium exist in sweetpotato. The study provides some candidate genes, which can be used in sweetpotato breeding program for improving low potassium stress tolerance.
Collapse
Affiliation(s)
- Rong Jin
- Xuzhou Sweetpotato Research Center, Xuzhou Institute of Agricultural Sciences, Xuzhou, Jiangsu, China
- Key Laboratory of Sweetpotato Biology and Genetic Breeding, Ministry of Agriculture, National Agricultural Experimental Station for Soil Quality, Xuzhou, Jiangsu, China
- Jiangsu Key Laboratory of Phylogenomics and Comparative Genomics, School of Life Sciences, Jiangsu Normal University, Xuzhou, 221116, Jiangsu, China
- sishui lifeng food products Co., Ltd, Jining, China
| | - Mengxiao Yan
- Shanghai Key Laboratory of Plant Functional Genomics and Resources, Shanghai Chenshan Plant Science Research Center, Chinese Academy of Sciences, Shanghai Chenshan Botanical Garden, Shanghai, 201602, China
| | - Guanghua Li
- sishui lifeng food products Co., Ltd, Jining, China
| | - Ming Liu
- Xuzhou Sweetpotato Research Center, Xuzhou Institute of Agricultural Sciences, Xuzhou, Jiangsu, China
- Key Laboratory of Sweetpotato Biology and Genetic Breeding, Ministry of Agriculture, National Agricultural Experimental Station for Soil Quality, Xuzhou, Jiangsu, China
| | - Peng Zhao
- Xuzhou Sweetpotato Research Center, Xuzhou Institute of Agricultural Sciences, Xuzhou, Jiangsu, China
- Key Laboratory of Sweetpotato Biology and Genetic Breeding, Ministry of Agriculture, National Agricultural Experimental Station for Soil Quality, Xuzhou, Jiangsu, China
| | - Zhe Zhang
- Sishui County Agriculture and Rural Bureau, Jining, China
| | - Qiangqiang Zhang
- Xuzhou Sweetpotato Research Center, Xuzhou Institute of Agricultural Sciences, Xuzhou, Jiangsu, China
| | - Xiaoya Zhu
- Xuzhou Sweetpotato Research Center, Xuzhou Institute of Agricultural Sciences, Xuzhou, Jiangsu, China
- Key Laboratory of Sweetpotato Biology and Genetic Breeding, Ministry of Agriculture, National Agricultural Experimental Station for Soil Quality, Xuzhou, Jiangsu, China
| | - Jing Wang
- Xuzhou Sweetpotato Research Center, Xuzhou Institute of Agricultural Sciences, Xuzhou, Jiangsu, China
- Key Laboratory of Sweetpotato Biology and Genetic Breeding, Ministry of Agriculture, National Agricultural Experimental Station for Soil Quality, Xuzhou, Jiangsu, China
| | - Yongchao Yu
- Xuzhou Sweetpotato Research Center, Xuzhou Institute of Agricultural Sciences, Xuzhou, Jiangsu, China
- Key Laboratory of Sweetpotato Biology and Genetic Breeding, Ministry of Agriculture, National Agricultural Experimental Station for Soil Quality, Xuzhou, Jiangsu, China
| | - Aijun Zhang
- Xuzhou Sweetpotato Research Center, Xuzhou Institute of Agricultural Sciences, Xuzhou, Jiangsu, China
- Key Laboratory of Sweetpotato Biology and Genetic Breeding, Ministry of Agriculture, National Agricultural Experimental Station for Soil Quality, Xuzhou, Jiangsu, China
| | - Jun Yang
- Shanghai Key Laboratory of Plant Functional Genomics and Resources, Shanghai Chenshan Plant Science Research Center, Chinese Academy of Sciences, Shanghai Chenshan Botanical Garden, Shanghai, 201602, China
| | - Zhonghou Tang
- Xuzhou Sweetpotato Research Center, Xuzhou Institute of Agricultural Sciences, Xuzhou, Jiangsu, China.
- Key Laboratory of Sweetpotato Biology and Genetic Breeding, Ministry of Agriculture, National Agricultural Experimental Station for Soil Quality, Xuzhou, Jiangsu, China.
| |
Collapse
|
8
|
Zeng Q, Jia H, Ma Y, Xu L, Ming R, Yue J. Genome-Wide Identification and Expression Pattern Profiling of the Aquaporin Gene Family in Papaya ( Carica papaya L.). Int J Mol Sci 2023; 24:17276. [PMID: 38139107 PMCID: PMC10744249 DOI: 10.3390/ijms242417276] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/24/2023] [Revised: 12/02/2023] [Accepted: 12/06/2023] [Indexed: 12/24/2023] Open
Abstract
Aquaporins (AQPs) are mainly responsible for the transportation of water and other small molecules such as CO2 and H2O2, and they perform diverse functions in plant growth, in development, and under stress conditions. They are also active participants in cell signal transduction in plants. However, little is known about AQP diversity, biological functions, and protein characteristics in papaya. To better understand the structure and function of CpAQPs in papaya, a total of 29 CpAQPs were identified and classified into five subfamilies. Analysis of gene structure and conserved motifs revealed that CpAQPs exhibited a degree of conservation, with some differentiation among subfamilies. The predicted interaction network showed that the PIP subfamily had the strongest protein interactions within the subfamily, while the SIP subfamily showed extensive interaction with members of the PIP, TIP, NIP, and XIP subfamilies. Furthermore, the analysis of CpAQPs' promoters revealed a large number of cis-elements participating in light, hormone, and stress responses. CpAQPs exhibited different expression patterns in various tissues and under different stress conditions. Collectively, these results provided a foundation for further functional investigations of CpAQPs in ripening, as well as leaf, flower, fruit, and seed development. They also shed light on the potential roles of CpAQP genes in response to environmental factors, offering valuable insights into their biological functions in papaya.
Collapse
Affiliation(s)
- Qiuxia Zeng
- Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University, Fuzhou 350002, China; (Q.Z.); (H.J.); (Y.M.); (L.X.)
- College of Agriculture, Fujian Agriculture and Forestry University, Fuzhou 350002, China
| | - Haifeng Jia
- Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University, Fuzhou 350002, China; (Q.Z.); (H.J.); (Y.M.); (L.X.)
- College of Agriculture, Fujian Agriculture and Forestry University, Fuzhou 350002, China
| | - Yaying Ma
- Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University, Fuzhou 350002, China; (Q.Z.); (H.J.); (Y.M.); (L.X.)
- College of Agriculture, Fujian Agriculture and Forestry University, Fuzhou 350002, China
| | - Liangwei Xu
- Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University, Fuzhou 350002, China; (Q.Z.); (H.J.); (Y.M.); (L.X.)
- College of Life Science, Fujian Agriculture and Forestry University, Fuzhou 350002, China
| | - Ray Ming
- Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University, Fuzhou 350002, China; (Q.Z.); (H.J.); (Y.M.); (L.X.)
| | - Jingjing Yue
- Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University, Fuzhou 350002, China; (Q.Z.); (H.J.); (Y.M.); (L.X.)
| |
Collapse
|
9
|
Raza A, Tabassum J, Fakhar AZ, Sharif R, Chen H, Zhang C, Ju L, Fotopoulos V, Siddique KHM, Singh RK, Zhuang W, Varshney RK. Smart reprograming of plants against salinity stress using modern biotechnological tools. Crit Rev Biotechnol 2023; 43:1035-1062. [PMID: 35968922 DOI: 10.1080/07388551.2022.2093695] [Citation(s) in RCA: 41] [Impact Index Per Article: 41.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/20/2022] [Accepted: 05/08/2022] [Indexed: 01/19/2023]
Abstract
Climate change gives rise to numerous environmental stresses, including soil salinity. Salinity/salt stress is the second biggest abiotic factor affecting agricultural productivity worldwide by damaging numerous physiological, biochemical, and molecular processes. In particular, salinity affects plant growth, development, and productivity. Salinity responses include modulation of ion homeostasis, antioxidant defense system induction, and biosynthesis of numerous phytohormones and osmoprotectants to protect plants from osmotic stress by decreasing ion toxicity and augmented reactive oxygen species scavenging. As most crop plants are sensitive to salinity, improving salt tolerance is crucial in sustaining global agricultural productivity. In response to salinity, plants trigger stress-related genes, proteins, and the accumulation of metabolites to cope with the adverse consequence of salinity. Therefore, this review presents an overview of salinity stress in crop plants. We highlight advances in modern biotechnological tools, such as omics (genomics, transcriptomics, proteomics, and metabolomics) approaches and different genome editing tools (ZFN, TALEN, and CRISPR/Cas system) for improving salinity tolerance in plants and accomplish the goal of "zero hunger," a worldwide sustainable development goal proposed by the FAO.
Collapse
Affiliation(s)
- Ali Raza
- Key Laboratory of Ministry of Education for Genetics, Breeding and Multiple Utilization of Crops, Oil Crops Research Institute, Center of Legume Crop Genetics and Systems Biology/College of Agriculture, Fujian Agriculture and Forestry University (FAFU), Fuzhou, China
| | - Javaria Tabassum
- State Key Laboratory of Rice Biology, China National Rice Research Institute, Chinese Academy of Agricultural Science (CAAS), Zhejiang, China
| | - Ali Zeeshan Fakhar
- National Institute for Biotechnology and Genetic Engineering (NIBGE), Faisalabad, Pakistan
| | - Rahat Sharif
- Department of Horticulture, College of Horticulture and Plant Protection, Yangzhou University, Yangzhou, China
| | - Hua Chen
- Key Laboratory of Ministry of Education for Genetics, Breeding and Multiple Utilization of Crops, Oil Crops Research Institute, Center of Legume Crop Genetics and Systems Biology/College of Agriculture, Fujian Agriculture and Forestry University (FAFU), Fuzhou, China
| | - Chong Zhang
- Key Laboratory of Ministry of Education for Genetics, Breeding and Multiple Utilization of Crops, Oil Crops Research Institute, Center of Legume Crop Genetics and Systems Biology/College of Agriculture, Fujian Agriculture and Forestry University (FAFU), Fuzhou, China
| | - Luo Ju
- State Key Laboratory of Rice Biology, China National Rice Research Institute, Chinese Academy of Agricultural Science (CAAS), Zhejiang, China
| | - Vasileios Fotopoulos
- Department of Agricultural Sciences, Biotechnology & Food Science, Cyprus University of Technology, Lemesos, Cyprus
| | - Kadambot H M Siddique
- The UWA Institute of Agriculture, The University of Western Australia, Crawley, Perth, Australia
| | - Rakesh K Singh
- Crop Diversification and Genetics, International Center for Biosaline Agriculture, Dubai, United Arab Emirates
| | - Weijian Zhuang
- Key Laboratory of Ministry of Education for Genetics, Breeding and Multiple Utilization of Crops, Oil Crops Research Institute, Center of Legume Crop Genetics and Systems Biology/College of Agriculture, Fujian Agriculture and Forestry University (FAFU), Fuzhou, China
| | - Rajeev K Varshney
- Key Laboratory of Ministry of Education for Genetics, Breeding and Multiple Utilization of Crops, Oil Crops Research Institute, Center of Legume Crop Genetics and Systems Biology/College of Agriculture, Fujian Agriculture and Forestry University (FAFU), Fuzhou, China
- Center of Excellence in Genomics & Systems Biology, International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Hyderabad, India
- Murdoch's Centre for Crop and Food Innovation, State Agricultural Biotechnology Centre, Murdoch University, Murdoch, Australia
| |
Collapse
|
10
|
Thakral V, Sharma Y, Mandlik R, Kumawat S, Patil G, Sonah H, Isenring P, Bélanger R, Sharma TR, Deshmukh R. Identification of VrNIP2-1 aquaporin with novel selective filter regulating the transport of beneficial as well as hazardous metalloids in mungbean (Vigna radiata L.). PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2023; 203:108057. [PMID: 37793194 DOI: 10.1016/j.plaphy.2023.108057] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/15/2023] [Revised: 09/06/2023] [Accepted: 09/24/2023] [Indexed: 10/06/2023]
Abstract
Nodulin 26-like intrinsic protein (NIP) subfamily of aquaporins (AQPs) in plants, is known to be involved in the uptake of metalloids including boron, germanium (Ge), arsenic (As), and silicon (Si). In the present study, a thorough evaluation of 55 AQPs found in the mungbean genome, including phylogenetic distribution, sequence homology, expression profiling, and structural characterization, contributed to the identification of VrNIP2-1 as a metalloid transporter. The pore-morphology of VrNIP2-1 was studied using molecular dynamics simulation. Interestingly, VrNIP2-1 was found to harbor an aromatic/arginine (ar/R) selectivity filter formed with ASGR amino acids instead of GSGR systematically reported in metalloid transporters (NIP2s) in higher plants. Evaluation of diverse cultivars showed a high level of Si accumulation in leaves indicating functional Si transport in mungbean. In addition, heterologous expression of VrNIP2-1 in yeast revealed As(III) and GeO2 transport activity. Similarly, VrNIP2-1 expression in Xenopus oocytes confirmed its Si transport ability. The metalloid transport activity with unique structural features will be helpful to better understand the solute specificity of NIP2s in mungbean and related pulses. The information provided here will also serve as a basis to improve Si uptake while restricting hazardous metalloids like As in plants.
Collapse
Affiliation(s)
- Vandana Thakral
- Department of Biotechnology, Panjab University, Chandigarh, India; Department of Biotechnology, Central University of Haryana, Jant-Pali, Mahendragarh, Haryana, India; National Agri-Food Biotechnology Institute (NABI), Mohali, Punjab, India
| | - Yogesh Sharma
- National Agri-Food Biotechnology Institute (NABI), Mohali, Punjab, India
| | - Rushil Mandlik
- Department of Biotechnology, Panjab University, Chandigarh, India; Department of Biotechnology, Central University of Haryana, Jant-Pali, Mahendragarh, Haryana, India
| | - Surbhi Kumawat
- Department of Biotechnology, Panjab University, Chandigarh, India
| | - Gunvant Patil
- Department of Plant and Soil Sciences, Institute of Genomics for Crop Abiotic Stress Tolerance, Texas Tech University, Lubbock, TX, USA
| | - Humira Sonah
- Department of Biotechnology, Central University of Haryana, Jant-Pali, Mahendragarh, Haryana, India
| | - Paul Isenring
- Nephrology Group, Department of Medicine, Faculty of Medicine, L'Hôtel-Dieu de Québec Institution, Université Laval, Québec, QC, Canada
| | - Richard Bélanger
- Département de Phytologie, Faculté des Sciences de l'Agriculture et de l'Alimentation (FSAA), Université Laval, Québec, QC, Canada
| | - Tilak Raj Sharma
- Division of Crop Science, Indian Council of Agriculture Research (ICAR), Krishi Bhavan, New Delhi, India
| | - Rupesh Deshmukh
- Department of Biotechnology, Central University of Haryana, Jant-Pali, Mahendragarh, Haryana, India.
| |
Collapse
|
11
|
Inden T, Hoshino A, Otagaki S, Matsumoto S, Shiratake K. Genome-Wide Analysis of Aquaporins in Japanese Morning Glory ( Ipomoea nil). PLANTS (BASEL, SWITZERLAND) 2023; 12:1511. [PMID: 37050139 PMCID: PMC10096635 DOI: 10.3390/plants12071511] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 02/13/2023] [Revised: 03/14/2023] [Accepted: 03/28/2023] [Indexed: 06/19/2023]
Abstract
The aquaporin (AQP) family, also called water channels or major intrinsic proteins, facilitate water transport. AQPs also transport low-molecular-weight solutes, including boric acid, glycerol, urea, and ammonia. Since plants are sessile, water homeostasis is crucial. Therefore, plants have developed diverse AQP variants at higher expression levels than animals. For example, 35 and 33 AQPs have been identified in Arabidopsis and rice, respectively. In the present study, we identified AQPs in morning glory (Ipomoea nil), which has been widely used as a model plant in research on flowering and floral morphology. The importance of AQPs in the opening of morning glory flowers has been reported. In the morning glory genome, 44 AQPs were identified, and their characteristics were analyzed. A phylogenetic analysis revealed five AQP subfamilies in morning glory: plasma membrane-intrinsic proteins (PIPs), tonoplast-intrinsic proteins (TIPs), nodulin 26-like intrinsic proteins (NIPs), small basic intrinsic proteins (SIPs), and X-intrinsic proteins (XIPs). Further, transport substrates of morning glory AQPs were estimated based on their homology to the known AQPs in other plant species and their corresponding amino acid motifs that possess permeability pores. It was expected that PIPs are likely to transport water, carbon dioxide, and hydrogen peroxide; TIPs are likely transport water, hydrogen peroxide, ammonia, urea, and boric acid; NIPs are likely transport water, boric acid, ammonia, glycerol, and formamide; and XIPs are likely to transport water, hydrogen peroxide, and glycerol. Overall, these results suggest that AQPs are involved in water and nutrient transport in Japanese morning glory. An in silico gene expression analysis suggested the importance of AQPs in flower opening, water or nutrient uptakes from the soil to roots, and photosynthesis in morning glory. Our findings provide fundamental information that enables further study into the importance of AQPs in morning glory, including their roles in flower opening and other physiological events.
Collapse
Affiliation(s)
- Tamami Inden
- Graduate School of Bioagricultural Sciences, Nagoya University, Nagoya 464-8601, Japan
| | - Atsushi Hoshino
- National Institute for Basic Biology, Okazaki 444-8585, Japan
- Department of Basic Biology, School of Life Science, SOKENDAI, Okazaki 444-8585, Japan
| | - Shungo Otagaki
- Graduate School of Bioagricultural Sciences, Nagoya University, Nagoya 464-8601, Japan
| | - Shogo Matsumoto
- Graduate School of Bioagricultural Sciences, Nagoya University, Nagoya 464-8601, Japan
| | - Katsuhiro Shiratake
- Graduate School of Bioagricultural Sciences, Nagoya University, Nagoya 464-8601, Japan
| |
Collapse
|
12
|
Dual Inoculation with Rhizophagus irregularis and Bacillus megaterium Improves Maize Tolerance to Combined Drought and High Temperature Stress by Enhancing Root Hydraulics, Photosynthesis and Hormonal Responses. Int J Mol Sci 2023; 24:ijms24065193. [PMID: 36982272 PMCID: PMC10049376 DOI: 10.3390/ijms24065193] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/17/2023] [Revised: 03/02/2023] [Accepted: 03/04/2023] [Indexed: 03/11/2023] Open
Abstract
Climate change is leading to combined drought and high temperature stress in many areas, drastically reducing crop production, especially for high-water-consuming crops such as maize. This study aimed to determine how the co-inoculation of an arbuscular mycorrhizal (AM) fungus (Rhizophagus irregularis) and the PGPR Bacillus megaterium (Bm) alters the radial water movement and physiology in maize plants in order to cope with combined drought and high temperature stress. Thus, maize plants were kept uninoculated or inoculated with R. irregularis (AM), with B. megaterium (Bm) or with both microorganisms (AM + Bm) and subjected or not to combined drought and high temperature stress (D + T). We measured plant physiological responses, root hydraulic parameters, aquaporin gene expression and protein abundances and sap hormonal content. The results showed that dual AM + Bm inoculation was more effective against combined D + T stress than single inoculation. This was related to a synergistic enhancement of efficiency of the phytosystem II, stomatal conductance and photosynthetic activity. Moreover, dually inoculated plants maintained higher root hydraulic conductivity, which was related to regulation of the aquaporins ZmPIP1;3, ZmTIP1.1, ZmPIP2;2 and GintAQPF1 and levels of plant sap hormones. This study demonstrates the usefulness of combining beneficial soil microorganisms to improve crop productivity under the current climate-change scenario.
Collapse
|
13
|
He R, Su H, Wang X, Ren Z, Zhang K, Feng T, Zhang M, Li Z, Li L, Zhuang J, Gong Z, Zhou Y, Duan L. Coronatine promotes maize water uptake by directly binding to the aquaporin ZmPIP2;5 and enhancing its activity. JOURNAL OF INTEGRATIVE PLANT BIOLOGY 2023; 65:703-720. [PMID: 36511119 DOI: 10.1111/jipb.13432] [Citation(s) in RCA: 8] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/24/2022] [Accepted: 12/11/2022] [Indexed: 06/17/2023]
Abstract
Water uptake is crucial for crop growth and development and drought stress tolerance. The water channel aquaporins (AQP) play important roles in plant water uptake. Here, we discovered that a jasmonic acid analog, coronatine (COR), enhanced maize (Zea mays) root water uptake capacity under artificial water deficiency conditions. COR treatment induced the expression of the AQP gene Plasma membrane intrinsic protein 2;5 (ZmPIP2;5). In vivo and in vitro experiments indicated that COR also directly acts on ZmPIP2;5 to improve water uptake in maize and Xenopus oocytes. The leaf water potential and hydraulic conductivity of roots growing under hyperosmotic conditions were higher in ZmPIP2;5-overexpression lines and lower in the zmpip2;5 knockout mutant, compared to wild-type plants. Based on a comparison between ZmPIP2;5 and other PIP2s, we predicted that COR may bind to the functional site in loop E of ZmPIP2;5. We confirmed this prediction by surface plasmon resonance technology and a microscale thermophoresis assay, and showed that deleting the binding motif greatly reduced COR binding. We identified the N241 residue as the COR-specific binding site, which may activate the channel of the AQP tetramer and increase water transport activity, which may facilitate water uptake under hyperosmotic stress.
Collapse
Affiliation(s)
- Rui He
- State Key Laboratory of Plant Physiology and Biochemistry, Engineering Research Center of Plant Growth Regulator, Ministry of Education & College of Agronomy and Biotechnology, China Agricultural University, Beijing, 100193, China
| | - Huiqing Su
- College of Plant Protection, China Agricultural University, Beijing, 100193, China
| | - Xing Wang
- State Key Laboratory of Plant Physiology and Biochemistry, Engineering Research Center of Plant Growth Regulator, Ministry of Education & College of Agronomy and Biotechnology, China Agricultural University, Beijing, 100193, China
| | - Zhijie Ren
- Key Laboratory of Plant Gene Resources and Biotechnology for Carbon Reduction and Environmental Improvement, Beijing Municipal Government, College of Life Sciences, Capital Normal University, Beijing, 100048, China
| | - Kun Zhang
- State Key Laboratory of Plant Physiology and Biochemistry, Engineering Research Center of Plant Growth Regulator, Ministry of Education & College of Agronomy and Biotechnology, China Agricultural University, Beijing, 100193, China
| | - Tianyu Feng
- State Key Laboratory of Plant Physiology and Biochemistry, Engineering Research Center of Plant Growth Regulator, Ministry of Education & College of Agronomy and Biotechnology, China Agricultural University, Beijing, 100193, China
| | - Mingcai Zhang
- State Key Laboratory of Plant Physiology and Biochemistry, Engineering Research Center of Plant Growth Regulator, Ministry of Education & College of Agronomy and Biotechnology, China Agricultural University, Beijing, 100193, China
| | - Zhaohu Li
- State Key Laboratory of Plant Physiology and Biochemistry, Engineering Research Center of Plant Growth Regulator, Ministry of Education & College of Agronomy and Biotechnology, China Agricultural University, Beijing, 100193, China
| | - Legong Li
- Key Laboratory of Plant Gene Resources and Biotechnology for Carbon Reduction and Environmental Improvement, Beijing Municipal Government, College of Life Sciences, Capital Normal University, Beijing, 100048, China
| | - Junhong Zhuang
- Center for Crop Functional Genomics and Molecular Breeding, China Agricultural University, Beijing, 100193, China
| | - Zhizhong Gong
- State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University, Beijing, 100193, China
| | - Yuyi Zhou
- State Key Laboratory of Plant Physiology and Biochemistry, Engineering Research Center of Plant Growth Regulator, Ministry of Education & College of Agronomy and Biotechnology, China Agricultural University, Beijing, 100193, China
| | - Liusheng Duan
- State Key Laboratory of Plant Physiology and Biochemistry, Engineering Research Center of Plant Growth Regulator, Ministry of Education & College of Agronomy and Biotechnology, China Agricultural University, Beijing, 100193, China
| |
Collapse
|
14
|
Groszmann M, De Rosa A, Chen W, Qiu J, McGaughey SA, Byrt CS, Evans JR. A high-throughput yeast approach to characterize aquaporin permeabilities: Profiling the Arabidopsis PIP aquaporin sub-family. FRONTIERS IN PLANT SCIENCE 2023; 14:1078220. [PMID: 36760647 PMCID: PMC9907170 DOI: 10.3389/fpls.2023.1078220] [Citation(s) in RCA: 6] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/24/2022] [Accepted: 01/04/2023] [Indexed: 06/18/2023]
Abstract
INTRODUCTION Engineering membrane transporters to achieve desired functionality is reliant on availability of experimental data informing structure-function relationships and intelligent design. Plant aquaporin (AQP) isoforms are capable of transporting diverse substrates such as signaling molecules, nutrients, metalloids, and gases, as well as water. AQPs can act as multifunctional channels and their transport function is reliant on many factors, with few studies having assessed transport function of specific isoforms for multiple substrates. METHODS High-throughput yeast assays were developed to screen for transport function of plant AQPs, providing a platform for fast data generation and cataloguing of substrate transport profiles. We applied our high-throughput growth-based yeast assays to screen all 13 Arabidopsis PIPs (AtPIPs) for transport of water and several neutral solutes: hydrogen peroxide (H2O2), boric acid (BA), and urea. Sodium (Na+) transport was assessed using elemental analysis techniques. RESULTS All AtPIPs facilitated water and H2O2 transport, although their growth phenotypes varied, and none were candidates for urea transport. For BA and Na+ transport, AtPIP2;2 and AtPIP2;7 were the top candidates, with yeast expressing these isoforms having the most pronounced toxicity response to BA exposure and accumulating the highest amounts of Na+. Linking putative AtPIP isoform substrate transport profiles with phylogenetics and gene expression data, enabled us to align possible substrate preferences with known and hypothesized biological roles of AtPIPs. DISCUSSION This testing framework enables efficient cataloguing of putative transport functionality of diverse AQPs at a scale that can help accelerate our understanding of AQP biology through big data approaches (e.g. association studies). The principles of the individual assays could be further adapted to test additional substrates. Data generated from this framework could inform future testing of AQP physiological roles, and address knowledge gaps in structure-function relationships to improve engineering efforts.
Collapse
Affiliation(s)
- Michael Groszmann
- Australian Research Council (ARC) Centre of Excellence for Translational Photosynthesis, Research School of Biology, Australian National University, Canberra, ACT, Australia
| | - Annamaria De Rosa
- Australian Research Council (ARC) Centre of Excellence for Translational Photosynthesis, Research School of Biology, Australian National University, Canberra, ACT, Australia
| | - Weihua Chen
- Australian Research Council (ARC) Centre of Excellence for Translational Photosynthesis, Research School of Biology, Australian National University, Canberra, ACT, Australia
| | - Jiaen Qiu
- Australian Research Council (ARC) Centre of Excellence in Plant Energy Biology, School of Agriculture, Food and Wine, University of Adelaide, Glen Osmond, SA, Australia
| | - Samantha A. McGaughey
- Australian Research Council (ARC) Centre of Excellence for Translational Photosynthesis, Research School of Biology, Australian National University, Canberra, ACT, Australia
| | - Caitlin S. Byrt
- Australian Research Council (ARC) Centre of Excellence for Translational Photosynthesis, Research School of Biology, Australian National University, Canberra, ACT, Australia
| | - John R. Evans
- Australian Research Council (ARC) Centre of Excellence for Translational Photosynthesis, Research School of Biology, Australian National University, Canberra, ACT, Australia
| |
Collapse
|
15
|
Yaghobi M, Heidari P. Genome-Wide Analysis of Aquaporin Gene Family in Triticum turgidum and Its Expression Profile in Response to Salt Stress. Genes (Basel) 2023; 14:genes14010202. [PMID: 36672943 PMCID: PMC9859376 DOI: 10.3390/genes14010202] [Citation(s) in RCA: 20] [Impact Index Per Article: 20.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/13/2022] [Revised: 01/07/2023] [Accepted: 01/10/2023] [Indexed: 01/13/2023] Open
Abstract
During the response of plants to water stresses, aquaporin (AQP) plays a prominent role in membrane water transport based on the received upstream signals. Due to the importance of the AQP gene family, studies have been conducted that investigate the function and regulatory system of these genes. However, many of their molecular aspects are still unknown. This study aims to carry out a genome-wide investigation of the AQP gene family in Triticum turgidum using bioinformatics tools and to investigate the expression patterns of some members in response to salt stress. Our results show that there are 80 TtAQP genes in T. turgidum, which are classified into four main groups based on phylogenetic analysis. Several duplications were observed between the members of the TtAQP gene family, and high diversity in response to post-translational modifications was observed between TtAQP family members. The expression pattern of TtAQP genes disclosed that these genes are primarily upregulated in response to salt stress. Additionally, the qPCR data revealed that TtAQPs are more induced in delayed responses to salinity stress. Overall, our findings illustrate that TtAQP members are diverse in terms of their structure, regulatory systems, and expression levels.
Collapse
|
16
|
Ku YS, Cheng SS, Cheung MY, Law CH, Lam HM. The Re-Localization of Proteins to or Away from Membranes as an Effective Strategy for Regulating Stress Tolerance in Plants. MEMBRANES 2022; 12:membranes12121261. [PMID: 36557168 PMCID: PMC9788111 DOI: 10.3390/membranes12121261] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/14/2022] [Revised: 12/08/2022] [Accepted: 12/09/2022] [Indexed: 06/12/2023]
Abstract
The membranes of plant cells are dynamic structures composed of phospholipids and proteins. Proteins harboring phospholipid-binding domains or lipid ligands can localize to membranes. Stress perception can alter the subcellular localization of these proteins dynamically, causing them to either associate with or detach from membranes. The mechanisms behind the re-localization involve changes in the lipidation state of the proteins and interactions with membrane-associated biomolecules. The functional significance of such re-localization includes the regulation of molecular transport, cell integrity, protein folding, signaling, and gene expression. In this review, proteins that re-localize to or away from membranes upon abiotic and biotic stresses will be discussed in terms of the mechanisms involved and the functional significance of their re-localization. Knowledge of the re-localization mechanisms will facilitate research on increasing plant stress adaptability, while the study on re-localization of proteins upon stresses will further our understanding of stress adaptation strategies in plants.
Collapse
|
17
|
Francisca RC, Alejandra MLM, Bárbara A, Herrera R. PIPs from Fragaria vesca: A structural analysis of native and mutated protein. J Mol Graph Model 2022; 117:108310. [PMID: 36063744 DOI: 10.1016/j.jmgm.2022.108310] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/09/2022] [Revised: 08/01/2022] [Accepted: 08/15/2022] [Indexed: 01/14/2023]
Abstract
Aquaporins are an ancient family of membrane channel proteins present in all eukaryotes and most prokaryotes, and apart from water, allow the transport of neutral solutes and organic compounds through the pore. These proteins are essential role differentially expressed during ripening in Fragaria vesca fruits. Fv PIP2-1a is intensively expressed in fruits, inclusive several other proteins member are differentially expressed in fruit but also in other plant tissues. Phylogenetic analysis shows that Fv PIP2-1a grouped with other Fragaria proteins and far apart from other F. vesca PIP proteins. A structural model for Fv PIP2-1a protein was built by comparative modelling methodology, which was validated and refined by molecular dynamics simulation. Fv PIP2-1a structure consists of 6 transmembrane regions and two NPA domains. The mobilization of water was analyzed by molecular docking simulations in wildtype and two mutants. Interestingly, the mutant FvPIP2-1a_H214G allowed the prediction of an increment in the flux of water molecules. On contrary, structural analysis predicted that H214E mutation blocked passage of water associated to constriction of the pore.
Collapse
Affiliation(s)
- Rodríguez-Cabello Francisca
- Functional Genomics, Biochemistry and Plant Physiology Group, Instituto de Ciencias Biológicas, Universidad de Talca, Talca, Chile
| | - Moya-León M Alejandra
- Functional Genomics, Biochemistry and Plant Physiology Group, Instituto de Ciencias Biológicas, Universidad de Talca, Talca, Chile
| | - Arévalo Bárbara
- Functional Genomics, Biochemistry and Plant Physiology Group, Instituto de Ciencias Biológicas, Universidad de Talca, Talca, Chile
| | - Raúl Herrera
- Functional Genomics, Biochemistry and Plant Physiology Group, Instituto de Ciencias Biológicas, Universidad de Talca, Talca, Chile.
| |
Collapse
|
18
|
Yang Z, Wang X, Feng J, Zhu S. Biological Functions of Hydrogen Sulfide in Plants. Int J Mol Sci 2022; 23:ijms232315107. [PMID: 36499443 PMCID: PMC9736554 DOI: 10.3390/ijms232315107] [Citation(s) in RCA: 9] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/12/2022] [Revised: 11/27/2022] [Accepted: 11/27/2022] [Indexed: 12/05/2022] Open
Abstract
Hydrogen sulfide (H2S), which is a gasotransmitter, can be biosynthesized and participates in various physiological and biochemical processes in plants. H2S also positively affects plants' adaptation to abiotic stresses. Here, we summarize the specific ways in which H2S is endogenously synthesized and metabolized in plants, along with the agents and methods used for H2S research, and outline the progress of research on the regulation of H2S on plant metabolism and morphogenesis, abiotic stress tolerance, and the series of different post-translational modifications (PTMs) in which H2S is involved, to provide a reference for future research on the mechanism of H2S action.
Collapse
Affiliation(s)
- Zhifeng Yang
- College of Chemistry and Material Science, Shandong Agricultural University, Tai’an 271018, China
- Department of Horticulture, College of Agriculture, Shihezi University, Shihezi 832000, China
| | - Xiaoyu Wang
- Department of Horticulture, College of Agriculture, Shihezi University, Shihezi 832000, China
| | - Jianrong Feng
- Department of Horticulture, College of Agriculture, Shihezi University, Shihezi 832000, China
| | - Shuhua Zhu
- College of Chemistry and Material Science, Shandong Agricultural University, Tai’an 271018, China
- Correspondence:
| |
Collapse
|
19
|
Promoter of Vegetable Soybean GmTIP1;6 Responds to Diverse Abiotic Stresses and Hormone Signals in Transgenic Arabidopsis. Int J Mol Sci 2022; 23:ijms232012684. [PMID: 36293538 PMCID: PMC9604487 DOI: 10.3390/ijms232012684] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/15/2022] [Revised: 09/30/2022] [Accepted: 10/18/2022] [Indexed: 11/17/2022] Open
Abstract
Tonoplast intrinsic proteins (TIPs), a sub-family of aquaporins (AQPs), are known to play important roles in plant abiotic stress responses. However, evidence for the promoters of TIPs involvement in abiotic stress processes remains scarce. In this study, the promoter of the vegetable soybean GmTIP1;6 gene, which had the highest similarity to TIP1-type AQPs from other plants, was cloned. Expression pattern analyses indicated that the GmTIP1;6 gene was dramatically induced by drought, salt, abscisic acid (ABA), and methyl jasmonate (MeJA) stimuli. Promoter analyses revealed that the GmTIP1;6 promoter contained drought, ABA, and MeJA cis-acting elements. Histochemical staining of the GmTIP1;6 promoter in transgenic Arabidopsis corroborated that it was strongly expressed in the vascular bundles of leaves, stems, and roots. Beta-glucuronidase (GUS) activity assays showed that the activities of the GmTIP1;6 promoter were enhanced by different concentrations of polyethylene glycol 6000 (PEG 6000), NaCl, ABA, and MEJA treatments. Integrating these results revealed that the GmTIP1;6 promoter could be applied for improving the tolerance to abiotic stresses of the transgenic plants by promoting the expression of vegetable soybean AQPs.
Collapse
|
20
|
Wang Y, Yang S, Li C, Hu T, Hou S, Bai Q, Ji X, Xu F, Guo C, Huang M, Cai Y, Liu J. The plasma membrane-localized OsNIP1;2 mediates internal aluminum detoxification in rice. FRONTIERS IN PLANT SCIENCE 2022; 13:970270. [PMID: 36172551 PMCID: PMC9512054 DOI: 10.3389/fpls.2022.970270] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 06/15/2022] [Accepted: 08/25/2022] [Indexed: 06/16/2023]
Abstract
Aluminum (Al) toxicity significantly restricts crop production on acidic soils. Although rice is highly resistant to Al stress, the underlying resistant mechanisms are not fully understood. Here, we characterized the function of OsNIP1;2, a plasma membrane-localized nodulin 26-like intrinsic protein (NIP) in rice. Aluminum stress specifically and quickly induced OsNIP1;2 expression in the root. Functional mutations of OsNIP1;2 in two independent rice lines led to significantly enhanced sensitivity to Al but not other metals. Moreover, the Osnip1;2 mutants had considerably more Al accumulated in the root cell wall but less in the cytosol than the wild-type rice. In addition, compared with the wild-type rice plants, the Osnip1;2 mutants contained more Al in the root but less in the shoot. When expressed in yeast, OsNIP1;2 led to enhanced Al accumulation in the cells and enhanced sensitivity to Al stress, suggesting that OsNIP1;2 facilitated Al uptake in yeast. These results suggest that OsNIP1;2 confers internal Al detoxification via taking out the root cell wall's Al, sequestering it to the root cell's vacuole, and re-distributing it to the above-ground tissues.
Collapse
Affiliation(s)
- Yuqi Wang
- Key Laboratory for Water Quality and Conservation of the Pearl River Delta, Ministry of Education, School of Environmental Science and Engineering, Guangzhou University, Guangzhou, China
- Robert W. Holley Center, United States Department of Agriculture, Agricultural Research Service, Cornell University, Ithaca, NY, United States
| | - Shaohua Yang
- Institute of Biotechnology, Fujian Academy of Agricultural Sciences, Fuzhou, China
| | - Chune Li
- Key Laboratory for Water Quality and Conservation of the Pearl River Delta, Ministry of Education, School of Environmental Science and Engineering, Guangzhou University, Guangzhou, China
| | - Taijiao Hu
- Institute of Biotechnology, Fujian Academy of Agricultural Sciences, Fuzhou, China
| | - Siyu Hou
- School of Agriculture, Shanxi Agricultural University, Jinzhong, China
| | - Qing Bai
- Key Laboratory for Water Quality and Conservation of the Pearl River Delta, Ministry of Education, School of Environmental Science and Engineering, Guangzhou University, Guangzhou, China
| | - Xiyue Ji
- Key Laboratory for Water Quality and Conservation of the Pearl River Delta, Ministry of Education, School of Environmental Science and Engineering, Guangzhou University, Guangzhou, China
| | - Feng Xu
- Key Laboratory for Water Quality and Conservation of the Pearl River Delta, Ministry of Education, School of Environmental Science and Engineering, Guangzhou University, Guangzhou, China
| | - Chongdai Guo
- Key Laboratory for Water Quality and Conservation of the Pearl River Delta, Ministry of Education, School of Environmental Science and Engineering, Guangzhou University, Guangzhou, China
| | - Min Huang
- Key Laboratory for Water Quality and Conservation of the Pearl River Delta, Ministry of Education, School of Environmental Science and Engineering, Guangzhou University, Guangzhou, China
| | - Yanfei Cai
- College of Natural Resources and Environment, South China Agricultural University, Guangzhou, China
| | - Jiping Liu
- Robert W. Holley Center, United States Department of Agriculture, Agricultural Research Service, Cornell University, Ithaca, NY, United States
- Plant Breeding and Genetics Section, School of Integrative Plant Sciences, Cornell University, Ithaca, NY, United States
| |
Collapse
|
21
|
Ruiz-Lozano JM, Quiroga G, Erice G, Pérez-Tienda J, Zamarreño ÁM, García-Mina JM, Aroca R. Using the Maize Nested Association Mapping (NAM) Population to Partition Arbuscular Mycorrhizal Effects on Drought Stress Tolerance into Hormonal and Hydraulic Components. Int J Mol Sci 2022; 23:ijms23179822. [PMID: 36077217 PMCID: PMC9456450 DOI: 10.3390/ijms23179822] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/06/2022] [Revised: 08/19/2022] [Accepted: 08/25/2022] [Indexed: 11/16/2022] Open
Abstract
In this study, a first experiment was conducted with the objective of determining how drought stress alters the radial water flow and physiology in the whole maize nested association mapping (NAM) population and to find out which contrasting maize lines should be tested in a second experiment for their responses to drought in combination with an arbuscular mycorrhizal (AM) fungus. Emphasis was placed on determining the role of plant aquaporins and phytohormones in the responses of these contrasting maize lines to cope with drought stress. Results showed that both plant aquaporins and hormones are altered by the AM symbiosis and are highly involved in the physiological responses of maize plants to drought stress. The regulation by the AM symbiosis of aquaporins involved in water transport across cell membranes alters radial water transport in host plants. Hormones such as IAA, SA, ABA and jasmonates must be involved in this process either by regulating the own plant-AM fungus interaction and the activity of aquaporins, or by inducing posttranscriptional changes in these aquaporins, which in turns alter their water transport capacity. An intricate relationship between root hydraulic conductivity, aquaporins and phytohormones has been observed, revealing a complex network controlling water transport in maize roots.
Collapse
Affiliation(s)
- Juan Manuel Ruiz-Lozano
- Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (CSIC), Profesor Albareda Nº 1, 18008 Granada, Spain
- Correspondence:
| | - Gabriela Quiroga
- Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (CSIC), Profesor Albareda Nº 1, 18008 Granada, Spain
- Misión Biológica de Galicia (MBG-CSIC), Apartado de correos 28, 36080 Pontevedra, Spain
| | - Gorka Erice
- Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (CSIC), Profesor Albareda Nº 1, 18008 Granada, Spain
- ATENS—Agrotecnologías Naturales S.L., Ctra.T-214, s/n, Km 4, La Riera de Gaia, 43762 Tarragona, Spain
| | - Jacob Pérez-Tienda
- Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (CSIC), Profesor Albareda Nº 1, 18008 Granada, Spain
| | - Ángel María Zamarreño
- Departmento de Biología Ambiental, Facultad de Ciencias, Universidad de Navarra, Irunlarrea No 1, 31008 Pamplona, Spain
| | - José María García-Mina
- Departmento de Biología Ambiental, Facultad de Ciencias, Universidad de Navarra, Irunlarrea No 1, 31008 Pamplona, Spain
| | - Ricardo Aroca
- Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (CSIC), Profesor Albareda Nº 1, 18008 Granada, Spain
| |
Collapse
|
22
|
Matamoros V, Casas ME, Mansilla S, Tadić Đ, Cañameras N, Carazo N, Portugal J, Piña B, Díez S, Bayona JM. Occurrence of antibiotics in Lettuce (Lactuca sativa L.) and Radish (Raphanus sativus L.) following organic soil fertilisation under plot-scale conditions: Crop and human health implications. JOURNAL OF HAZARDOUS MATERIALS 2022; 436:129044. [PMID: 35525220 DOI: 10.1016/j.jhazmat.2022.129044] [Citation(s) in RCA: 14] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/23/2021] [Revised: 04/25/2022] [Accepted: 04/28/2022] [Indexed: 06/14/2023]
Abstract
Recent studies have demonstrated the crop uptake of antibiotics (ABs) from soils treated with AB-carrying fertilisers. However, there is a lack of plot-scale studies linking their effects at the agronomic and metabolomic/transcriptomic level to their impact on human health. This paper assesses the plant uptake of 23 ABs following two productive cycles of lettuce and radish cropped with sewage sludge, pig slurry, the organic fraction of municipal solid waste, or chemical fertilisation under plot-scale conditions (32 plots spanning 3-10 m2 each). AB uptake by plants depended on both the vegetable and the AB class and was higher in radish than in lettuce edible parts. Levels ranged from undetectable to up to 76 ng/g (fresh weight). Repetitive organic fertilisation resulted in an increase in the concentration of ABs in lettuce leaves, but not in radish roots. Significant metabolomic and transcriptomic changes were observed following soil fertilisation. Nevertheless, a human health risk assessment indicates that the occurrence of ABs in lettuce or radish edible parts does not pose any risk. To our knowledge, this is the first holistic plot-scale study demonstrating that the use of organic fertilisers containing ABs is safe for crop security and human health.
Collapse
Affiliation(s)
- V Matamoros
- Department of Environmental Chemistry, IDAEA-CSIC, c/Jordi Girona, 18-26, E-08034 Barcelona, Spain; Department of Agri-Food Engineering and Biotechnology DEAB-UPC, Esteve Terrades 8, Building 4, Castelldefels, Spain.
| | - M Escolà Casas
- Department of Environmental Chemistry, IDAEA-CSIC, c/Jordi Girona, 18-26, E-08034 Barcelona, Spain; Department of Agri-Food Engineering and Biotechnology DEAB-UPC, Esteve Terrades 8, Building 4, Castelldefels, Spain
| | - S Mansilla
- Department of Environmental Chemistry, IDAEA-CSIC, c/Jordi Girona, 18-26, E-08034 Barcelona, Spain; Department of Agri-Food Engineering and Biotechnology DEAB-UPC, Esteve Terrades 8, Building 4, Castelldefels, Spain
| | - Đ Tadić
- Department of Environmental Chemistry, IDAEA-CSIC, c/Jordi Girona, 18-26, E-08034 Barcelona, Spain; Department of Agri-Food Engineering and Biotechnology DEAB-UPC, Esteve Terrades 8, Building 4, Castelldefels, Spain
| | - N Cañameras
- Department of Environmental Chemistry, IDAEA-CSIC, c/Jordi Girona, 18-26, E-08034 Barcelona, Spain; Department of Agri-Food Engineering and Biotechnology DEAB-UPC, Esteve Terrades 8, Building 4, Castelldefels, Spain
| | - N Carazo
- Department of Environmental Chemistry, IDAEA-CSIC, c/Jordi Girona, 18-26, E-08034 Barcelona, Spain; Department of Agri-Food Engineering and Biotechnology DEAB-UPC, Esteve Terrades 8, Building 4, Castelldefels, Spain
| | - J Portugal
- Department of Environmental Chemistry, IDAEA-CSIC, c/Jordi Girona, 18-26, E-08034 Barcelona, Spain; Department of Agri-Food Engineering and Biotechnology DEAB-UPC, Esteve Terrades 8, Building 4, Castelldefels, Spain
| | - B Piña
- Department of Environmental Chemistry, IDAEA-CSIC, c/Jordi Girona, 18-26, E-08034 Barcelona, Spain; Department of Agri-Food Engineering and Biotechnology DEAB-UPC, Esteve Terrades 8, Building 4, Castelldefels, Spain
| | - S Díez
- Department of Environmental Chemistry, IDAEA-CSIC, c/Jordi Girona, 18-26, E-08034 Barcelona, Spain; Department of Agri-Food Engineering and Biotechnology DEAB-UPC, Esteve Terrades 8, Building 4, Castelldefels, Spain
| | - J M Bayona
- Department of Environmental Chemistry, IDAEA-CSIC, c/Jordi Girona, 18-26, E-08034 Barcelona, Spain; Department of Agri-Food Engineering and Biotechnology DEAB-UPC, Esteve Terrades 8, Building 4, Castelldefels, Spain
| |
Collapse
|
23
|
Chen W, Zhou Y, Wu H, Zhang S, Yang R, Liu X. RhRab5ip, a new interactor of RhPIP1;1, was involved in flower opening of cut rose during water deficit. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2022; 181:61-70. [PMID: 35430395 DOI: 10.1016/j.plaphy.2022.03.040] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/22/2021] [Revised: 02/27/2022] [Accepted: 03/31/2022] [Indexed: 06/14/2023]
Abstract
Flower opening is a process primarily caused by water uptake-driven petal cell expansion. while which is easily affected by water deficit during transportation of cut flowers, resulting in abnormal flower opening. The knowledge of important players during this process remains limited. We previously reported that the aquaporin RhPIP1;1 plays an important role in ethylene-regulated petal cell expansion in rose flower. Here, we identified RhRab5ip as a new interactor of RhPIP1;1. RhRab5ip belongs to the Rab5-interacting protein (Rab5ip) family and may function in vesicle trafficking pathway. By using split ubiquitin yeast two-hybrid (SUY2H) system, bimolecular fluorescence complementation (BiFC) and subcellular colocalization we confirmed the existence of physical interaction between RhPIP1;1 and RhRab5ip in yeast and plant cell. The interaction of these two proteins happened at the small punctate structures in the cytoplasm. Expression of RhRab5ip in petals increased substantially at the initial stage of flower opening and maintained at high level until flower wilting. The transcripts of both RhRab5ip and RhPIP1;1 were greatly up-regulated by ABA and GA3 treatments, while only RhPIP1;1 was down-regulated by ethylene. Moreover, both RhRab5ip and RhPIP1;1 were significantly induced by water deficit treatment after 12 h-treatment, when flowers started to wilt and showed neck bending. Taken together, these findings suggested that RhRab5ip might functionally coordinate with RhPIP1;1 in response to water deficit stress in rose flower, expanding our understanding of the possible involvement of Rab5ip protein in the regulatory network of flower opening during water deficit.
Collapse
Affiliation(s)
- Wen Chen
- Collaborative Innovation Center for Efficient and Green Production of Agriculture in Mountainous Areas of Zhejiang Province, College of Horticulture Science, Zhejiang A&F University, Hangzhou, 311300, Zhejiang, China.
| | - Yingying Zhou
- Collaborative Innovation Center for Efficient and Green Production of Agriculture in Mountainous Areas of Zhejiang Province, College of Horticulture Science, Zhejiang A&F University, Hangzhou, 311300, Zhejiang, China
| | - Huimin Wu
- Collaborative Innovation Center for Efficient and Green Production of Agriculture in Mountainous Areas of Zhejiang Province, College of Horticulture Science, Zhejiang A&F University, Hangzhou, 311300, Zhejiang, China
| | - Shuai Zhang
- State Key Laboratory of Agrobiotechnology, Beijing Key Laboratory of Development and Quality Control of Ornamental Crops, Department of Ornamental Horticulture, College of Horticulture, China Agricultural University, Beijing, 100193, China
| | - Ruoyun Yang
- State Key Laboratory of Agrobiotechnology, Beijing Key Laboratory of Development and Quality Control of Ornamental Crops, Department of Ornamental Horticulture, College of Horticulture, China Agricultural University, Beijing, 100193, China
| | - Xiaojing Liu
- Institute of Botany, Jiangsu Province and Chinese Academy of Sciences, Nanjing, China
| |
Collapse
|
24
|
Conti V, Cantini C, Romi M, Cesare MM, Parrotta L, Del Duca S, Cai G. Distinct Tomato Cultivars Are Characterized by a Differential Pattern of Biochemical Responses to Drought Stress. Int J Mol Sci 2022; 23:5412. [PMID: 35628226 PMCID: PMC9141555 DOI: 10.3390/ijms23105412] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/05/2022] [Revised: 04/28/2022] [Accepted: 05/10/2022] [Indexed: 02/04/2023] Open
Abstract
Future climate scenarios suggest that crop plants will experience environmental changes capable of affecting their productivity. Among the most harmful environmental stresses is drought, defined as a total or partial lack of water availability. It is essential to study and understand both the damage caused by drought on crop plants and the mechanisms implemented to tolerate the stress. In this study, we focused on four cultivars of tomato, an economically important crop in the Mediterranean basin. We investigated the biochemical mechanisms of plant defense against drought by focusing on proteins specifically involved in this stress, such as osmotin, dehydrin, and aquaporin, and on proteins involved in the general stress response, such as HSP70 and cyclophilins. Since sugars are also known to act as osmoprotectants in plant cells, proteins involved in sugar metabolism (such as RuBisCO and sucrose synthase) were also analyzed. The results show crucial differences in biochemical behavior among the selected cultivars and highlight that the most tolerant tomato cultivars adopt quite specific biochemical strategies such as different accumulations of aquaporins and osmotins. The data set also suggests that RuBisCO isoforms and aquaporins can be used as markers of tolerance/susceptibility to drought stress and be used to select tomato cultivars within breeding programs.
Collapse
Affiliation(s)
- Veronica Conti
- Department of Life Sciences, University of Siena, 53100 Siena, Italy; (M.R.); (M.M.C.); (G.C.)
| | - Claudio Cantini
- National Research Council of Italy, Institute for Bioeconomy (CNR-IBE), 58022 Follonica, Italy;
| | - Marco Romi
- Department of Life Sciences, University of Siena, 53100 Siena, Italy; (M.R.); (M.M.C.); (G.C.)
| | - Maria Michela Cesare
- Department of Life Sciences, University of Siena, 53100 Siena, Italy; (M.R.); (M.M.C.); (G.C.)
| | - Luigi Parrotta
- Department of Biological, Geological and Environmental Sciences, University of Bologna, 40126 Bologna, Italy; (L.P.); (S.D.D.)
- Interdepartmental Centre for Agri-Food Industrial Research, University of Bologna, 47521 Cesena, Italy
| | - Stefano Del Duca
- Department of Biological, Geological and Environmental Sciences, University of Bologna, 40126 Bologna, Italy; (L.P.); (S.D.D.)
- Interdepartmental Centre for Agri-Food Industrial Research, University of Bologna, 47521 Cesena, Italy
| | - Giampiero Cai
- Department of Life Sciences, University of Siena, 53100 Siena, Italy; (M.R.); (M.M.C.); (G.C.)
| |
Collapse
|
25
|
In silico analysis and expression profiling of Expansin A4, BURP domain protein RD22-like and E6-like genes associated with fiber quality in cotton. Mol Biol Rep 2022; 49:5521-5534. [PMID: 35553343 DOI: 10.1007/s11033-022-07432-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/04/2022] [Accepted: 03/25/2022] [Indexed: 10/18/2022]
Abstract
BACKGROUND To supply high-quality cotton fibre for the textile industry, the development of long, strong and fine fibre cotton varieties is imperative. An interlinked approach was used to comprehend the role of fibre genes by analyzing interspecific progenies of cotton species. Wild Gossypium species and races are rich source of genetic polymorphism due to environmental dispersal and continuous natural selection. These genetic resources hold mass of outclass genes that can be used in cotton improvement breeding programs to exploit possible traits such as fibre quality, abiotic stress tolerance, and disease and insect resistance. Therefore, use of new molecular techniques such as genomics, transcriptomics and bioinformatics is very important to utilize the genetic potential of wild species in cotton improvement programs. METHODS Interspecific lines and Gossypium species used in the study were grown at Central Cotton Research Institute (CCRI), Multan. After retrieving DNA sequence of the genes from NCBI, the primers for gene expression and full-length gene sequence were designed. Expression profiling of Expansin A4, BURP Domain protein RD22-like and E6-like fibre genes was performed through Real Time PCR. BLAST and DNA sequence alignment was conducted for sequence comparison of interspecific lines and Gossypium species. Different in silico analysis were used for characterization of fibre genes and identification of cis acting promoter elements in promoter region. RESULTS Variable expression of genes related to fibre development was observed at different stages. BLAST and DNA sequence alignment demonstrated resemblance of interspecific lines with G. hirsutum. In silico analysis on the sequence data also confirmed the role of Expansin A4, BURP Domain protein RD22-like and E6-like fibre genes in fibre development. Genetic engineering is also recommended by transferring E6-like, Expansin A4 and BURP Domain RD22-like genes in local cotton cultivars. Similarly, several stress tolerant and light responsive cis acting elements were identified through promotor analysis, which may contribute for fibre development in the breeding programs. CONCLUSION Expansin A4, BURP Domain RD22-like and E6-like have positive role in fibre development with variable expression at fiber length and strength associated stages.
Collapse
|
26
|
Luo Y, Ma L, Du W, Yan S, Wang Z, Pang Y. Identification and Characterization of Salt- and Drought-Responsive AQP Family Genes in Medicagosativa L. Int J Mol Sci 2022; 23:ijms23063342. [PMID: 35328763 PMCID: PMC8950044 DOI: 10.3390/ijms23063342] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/07/2022] [Revised: 02/22/2022] [Accepted: 02/23/2022] [Indexed: 02/05/2023] Open
Abstract
Aquaporins (AQP) are distributed ubiquitously in plants, and they play important roles in multiple aspects of plant growth and development, as well as in plant resistance to various environmental stresses. In this study, 43 MsAQP genes were identified in the forage crop Medicago sativa. All the MsAQP proteins were clustered into four subfamilies based on sequence similarity and phylogenetic relationship, including 17 TIPs, 14 NIPs, 9 PIPs and 3 SIPs. Analyses of gene structure and conserved domains indicated that the majority of the deduced MsAQP proteins contained the signature transmembrane domains and the NPA motifs. Analyses on cis-acting elements in the promoter region of MsAQP genes revealed the presence of multiple and diverse stress-responsive and hormone-responsive cis-acting elements. In addition, by analyzing the available and comprehensive gene expression data of M. truncatula, we screened ten representative MtAQP genes that were responsive to NaCl or drought stress. By analyzing the sequence similarity and phylogenetic relationship, we finally identified the corresponding ten salt- or drought-responsive AQP genes in M. sativa, including three MsTIPs, three MsPIPs and four MsNIPs. The qPCRs showed that the relative expression levels of these ten selected MsAQP genes responded differently to NaCl or drought treatment in M. sativa. Gene expression patterns showed that most MsAQP genes were preferentially expressed in roots or in leaves, which may reflect their tissue-specific functions associated with development. Our results lay an important foundation for the future characterization of the functions of MsAQP genes, and provide candidate genes for stress resistance improvement through genetic breeding in M. sativa.
Collapse
Affiliation(s)
- Yijing Luo
- College of Grassland Science, Qingdao Agricultural University, Qingdao 266109, China; (Y.L.); (S.Y.)
- Institute of Animal Science, Chinese Academy of Agricultural Sciences, Beijing 100093, China; (L.M.); (W.D.)
| | - Lin Ma
- Institute of Animal Science, Chinese Academy of Agricultural Sciences, Beijing 100093, China; (L.M.); (W.D.)
| | - Wenxuan Du
- Institute of Animal Science, Chinese Academy of Agricultural Sciences, Beijing 100093, China; (L.M.); (W.D.)
| | - Su Yan
- College of Grassland Science, Qingdao Agricultural University, Qingdao 266109, China; (Y.L.); (S.Y.)
- Institute of Animal Science, Chinese Academy of Agricultural Sciences, Beijing 100093, China; (L.M.); (W.D.)
| | - Zengyu Wang
- College of Grassland Science, Qingdao Agricultural University, Qingdao 266109, China; (Y.L.); (S.Y.)
- Correspondence: (Z.W.); (Y.P.)
| | - Yongzhen Pang
- Institute of Animal Science, Chinese Academy of Agricultural Sciences, Beijing 100093, China; (L.M.); (W.D.)
- Correspondence: (Z.W.); (Y.P.)
| |
Collapse
|
27
|
Liu C, Sun D, Zheng HX, Wang GB, Liu WS, Cao Y, Tang YT, Qiu RL. The limited exclusion and efficient translocation mediated by organic acids contribute to rare earth element hyperaccumulation in Phytolacca americana. THE SCIENCE OF THE TOTAL ENVIRONMENT 2022; 805:150335. [PMID: 34818777 DOI: 10.1016/j.scitotenv.2021.150335] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/30/2021] [Revised: 09/09/2021] [Accepted: 09/10/2021] [Indexed: 06/13/2023]
Abstract
Organic acids play an important role in metal tolerance, uptake, and translocation in hyperaccumulators. Phytolacca americana is a rare earth element (REE) hyperaccumulator, but the underlying mechanisms on REE tolerance and accumulation mediated by organic acids are poorly understood. Here, we reported for the first time the strategy of P. americana to enhance REE tolerance and accumulation through organic acids from root external secretion to internal biosynthesis. Different from the exclusion of heavy metal by organic acid in the typical plants, the results showed that oxalate secretion (0.3-0.6 μmol h-1 g-1 root DW) induced by yttrium (Y) could not prevent Y from entering the roots, resulting in excess Y uptake by P. americana. Yttrium stress also stimulated the accumulation of malate and citrate by 1.4- and 2.0-folds in the root cortex. Exogenous malate and citrate promoted the redistribution of Y from the root cell walls to the shoot by 30% and 21%, respectively. Based on comparative transcriptome analysis, 6-fold up-regulation was observed in PaNIP1;2, whose homology AtNIP1;2 is responsible for the transport of Al-malate in Arabidopsis. These results suggested that the promoted formation of Y-malate complexes within the roots potentially accelerated the transport of Y from P. americana roots to shoots through PaNIP1;2. Our study revealed the potential mechanism of organic acids in the external exclusion and internal detoxification and translocation of REE in P. americana roots, which provided a basis for improving the efficiency of REE phytoextraction.
Collapse
Affiliation(s)
- Chong Liu
- School of Environmental Science and Engineering, Sun Yat-sen University, Guangzhou 510006, China
| | - Dan Sun
- School of Environmental Science and Engineering, Sun Yat-sen University, Guangzhou 510006, China
| | - Hong-Xiang Zheng
- School of Environmental Science and Engineering, Sun Yat-sen University, Guangzhou 510006, China
| | - Guo-Bao Wang
- School of Environmental Science and Engineering, Sun Yat-sen University, Guangzhou 510006, China
| | - Wen-Shen Liu
- School of Environmental Science and Engineering, Sun Yat-sen University, Guangzhou 510006, China; Guangdong Provincial Key Laboratory of Environmental Pollution Control and Remediation Technology, Sun Yat-sen University, Guangzhou 510006, China; Guangdong Provincial Engineering Research Center for Heavy Metal Contaminated Soil Remediation, Sun Yat-sen University, Guangzhou 510006, China.
| | - Yue Cao
- School of Environmental Science and Engineering, Sun Yat-sen University, Guangzhou 510006, China; Guangdong Provincial Key Laboratory of Environmental Pollution Control and Remediation Technology, Sun Yat-sen University, Guangzhou 510006, China; Guangdong Provincial Engineering Research Center for Heavy Metal Contaminated Soil Remediation, Sun Yat-sen University, Guangzhou 510006, China.
| | - Ye-Tao Tang
- School of Environmental Science and Engineering, Sun Yat-sen University, Guangzhou 510006, China; Guangdong Provincial Key Laboratory of Environmental Pollution Control and Remediation Technology, Sun Yat-sen University, Guangzhou 510006, China; Guangdong Provincial Engineering Research Center for Heavy Metal Contaminated Soil Remediation, Sun Yat-sen University, Guangzhou 510006, China
| | - Rong-Liang Qiu
- School of Environmental Science and Engineering, Sun Yat-sen University, Guangzhou 510006, China; Guangdong Provincial Key Laboratory of Environmental Pollution Control and Remediation Technology, Sun Yat-sen University, Guangzhou 510006, China; Guangdong Provincial Engineering Research Center for Heavy Metal Contaminated Soil Remediation, Sun Yat-sen University, Guangzhou 510006, China; Guangdong Laboratory for Lingnan Modern Agriculture, College of Natural Resources and Environment, South China Agricultural University, Guangzhou 510642, China
| |
Collapse
|
28
|
Bhupenchandra I, Chongtham SK, Devi EL, R. R, Choudhary AK, Salam MD, Sahoo MR, Bhutia TL, Devi SH, Thounaojam AS, Behera C, M. N. H, Kumar A, Dasgupta M, Devi YP, Singh D, Bhagowati S, Devi CP, Singh HR, Khaba CI. Role of biostimulants in mitigating the effects of climate change on crop performance. FRONTIERS IN PLANT SCIENCE 2022; 13:967665. [PMID: 36340395 PMCID: PMC9634556 DOI: 10.3389/fpls.2022.967665] [Citation(s) in RCA: 13] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/13/2022] [Accepted: 09/12/2022] [Indexed: 05/13/2023]
Abstract
Climate change is a critical yield-limiting factor that has threatened the entire global crop production system in the present scenario. The use of biostimulants in agriculture has shown tremendous potential in combating climate change-induced stresses such as drought, salinity, temperature stress, etc. Biostimulants are organic compounds, microbes, or amalgamation of both that could regulate plant growth behavior through molecular alteration and physiological, biochemical, and anatomical modulations. Their nature is diverse due to the varying composition of bioactive compounds, and they function through various modes of action. To generate a successful biostimulatory action on crops under different parameters, a multi-omics approach would be beneficial to identify or predict its outcome comprehensively. The 'omics' approach has greatly helped us to understand the mode of action of biostimulants on plants at cellular levels. Biostimulants acting as a messenger in signal transduction resembling phytohormones and other chemical compounds and their cross-talk in various abiotic stresses help us design future crop management under changing climate, thus, sustaining food security with finite natural resources. This review article elucidates the strategic potential and prospects of biostimulants in mitigating the adverse impacts of harsh environmental conditions on plants.
Collapse
Affiliation(s)
- Ingudam Bhupenchandra
- Indian Council of Agricultural Research (ICAR)–Krishi Vigyan Kendra Tamenglong, Indian Council of Agricultural Research (ICAR) Research Complex for NorthEastern Hill (NEH) Region, Manipur Centre, Imphal, Manipur, India
- *Correspondence: Anil Kumar Choudhary, ; Harish. M. N., ; Ingudam Bhupenchandra,
| | - Sunil Kumar Chongtham
- Multi Technology Testing Centre and Vocational Training Centre, College of Agricultural Engineering and Post Harvest Technology (CAEPHT), Central Agricultural University (CAU), Ranipool, Sikkim, India
| | - Elangbam Lamalakshmi Devi
- Indian Council of Agricultural Research (ICAR)-Research Complex (RC) for North Eastern Hill (NEH) Region, Sikkim Centre, Tadong, Sikkim, India
| | - Ramesh R.
- Division of Plant Physiology, Indian Council of Agricultural Research (ICAR)–Indian Agricultural Research Institute, New Delhi, India
| | - Anil Kumar Choudhary
- Division of Agronomy, Indian Council of Agricultural Research - Indian Agricultural Research Institute, New Delhi, India
- Division of Crop Production, Indian Council of Agricultural Research - Central Potato Research Institute, Shimla, India
- *Correspondence: Anil Kumar Choudhary, ; Harish. M. N., ; Ingudam Bhupenchandra,
| | | | - Manas Ranjan Sahoo
- Central Horticultural Experiment Station, Indian Council of Agricultural Research (ICAR)–Indian Institute of Horticultural Research, Bhubaneswar, Odisha, India
| | - Tshering Lhamu Bhutia
- Indian Council of Agricultural Research (ICAR)-Research Complex (RC) for North Eastern Hill (NEH) Region, Sikkim Centre, Tadong, Sikkim, India
| | - Soibam Helena Devi
- Department of Crop Physiology, Assam Agricultural University, Jorhat, Assam, India
| | - Amarjit Singh Thounaojam
- Medicinal and Aromatic Plants Research Station, Anand Agricultural University, Anand, Gujarat, India
| | - Chandana Behera
- Department of Plant Breeding and Genetics, College of Agriculture, OUAT, Bhawanipatna, India
| | - Harish. M. N.
- Indian Council of Agricultural Research (ICAR)–Indian Institute of Horticultural Research, Farm Science Centre, Gonikoppal, Karnataka, India
- *Correspondence: Anil Kumar Choudhary, ; Harish. M. N., ; Ingudam Bhupenchandra,
| | - Adarsh Kumar
- Indian Council of Agricultural Research: National Bureau of Agriculturally Important Microorganism, Mau, India
| | - Madhumita Dasgupta
- Indian Council of Agricultural Research (ICAR)–Research Complex for NorthEastern Hill (NEH) Region, Manipur Centre, Imphal, Manipur, India
| | - Yumnam Prabhabati Devi
- Indian Council of Agricultural Research (ICAR)-Krishi Vigyan Kendra, Chandel, Indian Council of Agricultural Research (ICAR) Research Complex for NorthEastern Hill (NEH) Region, Manipur Centre, Imphal, Manipur, India
| | - Deepak Singh
- Krishi Vigyan Kendra Bhopal, Indian Council of Agricultural Research (ICAR) Central Institute of Agricultural Engineering, Bhopal, Madhya Pradesh, India
| | - Seema Bhagowati
- Department of Soil Science, Assam Agricultural University, Jorhat, Assam, India
| | - Chingakham Premabati Devi
- Indian Council of Agricultural Research (ICAR)–Research Complex for NorthEastern Hill (NEH) Region, Manipur Centre, Imphal, Manipur, India
| | | | | |
Collapse
|
29
|
Wu D, Saleem M, He T, He G. The Mechanism of Metal Homeostasis in Plants: A New View on the Synergistic Regulation Pathway of Membrane Proteins, Lipids and Metal Ions. MEMBRANES 2021; 11:membranes11120984. [PMID: 34940485 PMCID: PMC8706360 DOI: 10.3390/membranes11120984] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 10/29/2021] [Revised: 12/04/2021] [Accepted: 12/11/2021] [Indexed: 12/15/2022]
Abstract
Heavy metal stress (HMS) is one of the most destructive abiotic stresses which seriously affects the growth and development of plants. Recent studies have shown significant progress in understanding the molecular mechanisms underlying plant tolerance to HMS. In general, three core signals are involved in plants' responses to HMS; these are mitogen-activated protein kinase (MAPK), calcium, and hormonal (abscisic acid) signals. In addition to these signal components, other regulatory factors, such as microRNAs and membrane proteins, also play an important role in regulating HMS responses in plants. Membrane proteins interact with the highly complex and heterogeneous lipids in the plant cell environment. The function of membrane proteins is affected by the interactions between lipids and lipid-membrane proteins. Our review findings also indicate the possibility of membrane protein-lipid-metal ion interactions in regulating metal homeostasis in plant cells. In this review, we investigated the role of membrane proteins with specific substrate recognition in regulating cell metal homeostasis. The understanding of the possible interaction networks and upstream and downstream pathways is developed. In addition, possible interactions between membrane proteins, metal ions, and lipids are discussed to provide new ideas for studying metal homeostasis in plant cells.
Collapse
Affiliation(s)
- Danxia Wu
- College of Agricultural, Guizhou University, Guiyang 550025, China;
| | - Muhammad Saleem
- Department of Biological Sciences, Alabama State University, Montgomery, AL 36104, USA;
| | - Tengbing He
- College of Agricultural, Guizhou University, Guiyang 550025, China;
- Institute of New Rural Development, West Campus, Guizhou University, Guiyang 550025, China
- Correspondence: (T.H.); (G.H.)
| | - Guandi He
- College of Agricultural, Guizhou University, Guiyang 550025, China;
- Correspondence: (T.H.); (G.H.)
| |
Collapse
|
30
|
Tomkins M, Hughes A, Morris RJ. An update on passive transport in and out of plant cells. PLANT PHYSIOLOGY 2021; 187:1973-1984. [PMID: 35235675 PMCID: PMC8644452 DOI: 10.1093/plphys/kiab406] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/12/2021] [Accepted: 07/30/2021] [Indexed: 05/09/2023]
Abstract
Transport across membranes is critical for plant survival. Membranes are the interfaces at which plants interact with their environment. The transmission of energy and molecules into cells provides plants with the source material and power to grow, develop, defend, and move. An appreciation of the physical forces that drive transport processes is thus important for understanding the plant growth and development. We focus on the passive transport of molecules, describing the fundamental concepts and demonstrating how different levels of abstraction can lead to different interpretations of the driving forces. We summarize recent developments on quantitative frameworks for describing diffusive and bulk flow transport processes in and out of cells, with a more detailed focus on plasmodesmata, and outline open questions and challenges.
Collapse
Affiliation(s)
- Melissa Tomkins
- Computational and Systems Biology, John Innes Centre, Norwich Research Park, NR4 7UH Norwich, UK
| | - Aoife Hughes
- Computational and Systems Biology, John Innes Centre, Norwich Research Park, NR4 7UH Norwich, UK
| | - Richard J Morris
- Computational and Systems Biology, John Innes Centre, Norwich Research Park, NR4 7UH Norwich, UK
- Author for communication:
| |
Collapse
|
31
|
Saddhe AA, Mishra AK, Kumar K. Molecular insights into the role of plant transporters in salt stress response. PHYSIOLOGIA PLANTARUM 2021; 173:1481-1494. [PMID: 33963568 DOI: 10.1111/ppl.13453] [Citation(s) in RCA: 14] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/20/2021] [Revised: 03/29/2021] [Accepted: 05/06/2021] [Indexed: 05/23/2023]
Abstract
Salt stress disturbs the cellular osmotic and ionic balance, which then creates a negative impact on plant growth and development. The Na+ and Cl- ions can enter into plant cells through various membrane transporters, including specific and non-specific Na+ , K+ , and Ca2+ transporters. Therefore, it is important to understand Na+ and K+ transport mechanisms in plants along with the isolation of genes, their characterization, the structural features, and their post-translation regulation under salt stress. This review summarizes the molecular insights of plant ion transporters, including non-selective cation transporters, cyclic nucleotide-gated cation transporters, glutamate-like receptors, membrane intrinsic proteins, cation proton antiporters, and sodium proton antiporter families. Further, we discussed the K+ transporter families such as high-affinity K+ transporters, HAK/KUP/KT transporters, shaker type K+ transporters, and K+ efflux antiporters. Besides the ion transport process, we have shed light on available literature on epigenetic regulation of transport processes under salt stress. Recent advancements of salt stress sensing mechanisms and various salt sensors within signaling transduction pathways are discussed. Further, we have compiled salt-stress signaling pathways, and their crosstalk with phytohormones.
Collapse
Affiliation(s)
- Ankush Ashok Saddhe
- Department of Biological Sciences, Birla Institute of Technology and Science Pilani, K. K. Birla Goa Campus, Goa, 403726, India
| | - Ajay Kumar Mishra
- Biology Centre, Czech Academy of Sciences, Department of Molecular Genetics, Institute of Plant Molecular Biology, České Budějovice, Czech Republic
| | - Kundan Kumar
- Department of Biological Sciences, Birla Institute of Technology and Science Pilani, K. K. Birla Goa Campus, Goa, 403726, India
| |
Collapse
|
32
|
Wang X, Lu K, Yao X, Zhang L, Wang F, Wu D, Peng J, Chen X, Du J, Wei J, Ma J, Chen L, Zou S, Zhang C, Zhang M, Dong H. The Aquaporin TaPIP2;10 Confers Resistance to Two Fungal Diseases in Wheat. PHYTOPATHOLOGY 2021; 111:2317-2331. [PMID: 34058861 DOI: 10.1094/phyto-02-21-0048-r] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/12/2023]
Abstract
Plants employ aquaporins (AQPs) of the plasma membrane intrinsic protein (PIP) family to import environmental substrates, thereby affecting various processes, such as the cellular responses regulated by the signaling molecule hydrogen peroxide (H2O2). Common wheat (Triticum aestivum) contains 24 candidate members of the PIP family, designated as TaPIP1;1 to TaPIP1;12 and TaPIP2;1 to TaPIP2;12. None of these TaPIP candidates have been characterized for substrate selectivity or defense responses in their source plant. Here, we report that T. aestivum AQP TaPIP2;10 facilitates the cellular uptake of H2O2 to confer resistance against powdery mildew and Fusarium head blight, two devastating fungal diseases in wheat throughout the world. In wheat, the apoplastic H2O2 signal is induced by fungal attack, while TaPIP2;10 is stimulated to translocate this H2O2 into the cytoplasm, where it activates defense responses to restrict further attack. TaPIP2;10-mediated transport of H2O2 is essential for pathogen-associated molecular pattern-triggered plant immunity (PTI). Typical PTI responses are induced by the fungal infection and intensified by overexpression of the TaPIP2;10 gene. TaPIP2;10 overexpression causes a 70% enhancement in wheat resistance to powdery mildew and an 86% enhancement in resistance to Fusarium head blight. By reducing the disease severities, TaPIP2;10 overexpression brings about >37% increase in wheat grain yield. These results verify the feasibility of using an immunity-relevant AQP to concomitantly improve crop productivity and immunity.
Collapse
Affiliation(s)
- Xiaobing Wang
- College of Plant Protection, Nanjing Agricultural University, Nanjing, Jiangsu Province 210095, China
| | - Kai Lu
- College of Plant Protection, Shandong Agricultural University, Taian, Shandong Province 271018, China
| | - Xiaohui Yao
- College of Plant Protection, Shandong Agricultural University, Taian, Shandong Province 271018, China
| | - Liyuan Zhang
- College of Plant Protection, Shandong Agricultural University, Taian, Shandong Province 271018, China
- State Key Laboratory of Crop Biology, Shandong Agricultural University, Taian, Shandong Province 271018, China
| | - Fubin Wang
- Institute of Environmental Sciences & Resources and Plant Protection, Jining Academy of Agricultural Sciences, Jining, Shandon Province 272000, China
| | - Degong Wu
- College of Agriculture, Anhui Science and Technology University, Fengyang, Anhui Province 233100, China
| | - Jinfeng Peng
- College of Plant Protection, Nanjing Agricultural University, Nanjing, Jiangsu Province 210095, China
| | - Xiaochen Chen
- College of Plant Protection, Nanjing Agricultural University, Nanjing, Jiangsu Province 210095, China
| | - Junli Du
- College of Agriculture, Anhui Science and Technology University, Fengyang, Anhui Province 233100, China
| | - Jiankun Wei
- College of Plant Protection, Shandong Agricultural University, Taian, Shandong Province 271018, China
| | - Jingyu Ma
- Institute of Environmental Sciences & Resources and Plant Protection, Jining Academy of Agricultural Sciences, Jining, Shandon Province 272000, China
| | - Lei Chen
- College of Plant Protection, Shandong Agricultural University, Taian, Shandong Province 271018, China
- State Key Laboratory of Crop Biology, Shandong Agricultural University, Taian, Shandong Province 271018, China
| | - Shenshen Zou
- College of Plant Protection, Shandong Agricultural University, Taian, Shandong Province 271018, China
- State Key Laboratory of Crop Biology, Shandong Agricultural University, Taian, Shandong Province 271018, China
| | - Chunling Zhang
- College of Plant Protection, Nanjing Agricultural University, Nanjing, Jiangsu Province 210095, China
| | - Meixiang Zhang
- College of Plant Protection, Nanjing Agricultural University, Nanjing, Jiangsu Province 210095, China
| | - Hansong Dong
- College of Plant Protection, Nanjing Agricultural University, Nanjing, Jiangsu Province 210095, China
- College of Plant Protection, Shandong Agricultural University, Taian, Shandong Province 271018, China
- State Key Laboratory of Crop Biology, Shandong Agricultural University, Taian, Shandong Province 271018, China
| |
Collapse
|
33
|
Melton AE, Beck J, Galla SJ, Jenkins J, Handley L, Kim M, Grimwood J, Schmutz J, Richardson BA, Serpe M, Novak S, Buerki S. A draft genome provides hypotheses on drought tolerance in a keystone plant species in Western North America threatened by climate change. Ecol Evol 2021; 11:15417-15429. [PMID: 34765187 PMCID: PMC8571618 DOI: 10.1002/ece3.8245] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/26/2021] [Revised: 08/12/2021] [Accepted: 10/01/2021] [Indexed: 11/17/2022] Open
Abstract
Climate change presents distinct ecological and physiological challenges to plants as extreme climate events become more common. Understanding how species have adapted to drought, especially ecologically important nonmodel organisms, will be crucial to elucidate potential biological pathways for drought adaptation and inform conservation strategies. To aid in genome-to-phenome research, a draft genome was assembled for a diploid individual of Artemisia tridentata subsp. tridentata, a threatened keystone shrub in western North America. While this taxon has few genetic resources available and genetic/genomics work has proven difficult due to genetic heterozygosity in the past, a draft genome was successfully assembled. Aquaporin (AQP) genes and their promoter sequences were mined from the draft genome to predict mechanisms regulating gene expression and generate hypotheses on key genes underpinning drought response. Fifty-one AQP genes were fully assembled within the draft genome. Promoter and phylogenetic analyses revealed putative duplicates of A. tridentata subsp. tridentata AQPs which have experienced differentiation in promoter elements, potentially supporting novel biological pathways. Comparison with nondrought-tolerant congener supports enrichments of AQP genes in this taxon during adaptation to drought stress. Differentiation of promoter elements revealed that paralogues of some genes have evolved to function in different pathways, highlighting these genes as potential candidates for future research and providing critical hypotheses for future genome-to-phenome work.
Collapse
Affiliation(s)
- Anthony E. Melton
- Department of Biological SciencesBoise State UniversityBoiseIdahoUSA
| | - James Beck
- Department of ComputingBoise State UniversityBoiseIdahoUSA
| | | | - Jerry Jenkins
- HudsonAlpha Institute for BiotechnologyHuntsvilleAlabamaUSA
| | - Lori Handley
- HudsonAlpha Institute for BiotechnologyHuntsvilleAlabamaUSA
| | - Min Kim
- HudsonAlpha Institute for BiotechnologyHuntsvilleAlabamaUSA
| | - Jane Grimwood
- HudsonAlpha Institute for BiotechnologyHuntsvilleAlabamaUSA
| | - Jeremy Schmutz
- HudsonAlpha Institute for BiotechnologyHuntsvilleAlabamaUSA
| | | | - Marcelo Serpe
- Department of Biological SciencesBoise State UniversityBoiseIdahoUSA
| | - Stephen Novak
- Department of Biological SciencesBoise State UniversityBoiseIdahoUSA
| | - Sven Buerki
- Department of Biological SciencesBoise State UniversityBoiseIdahoUSA
| |
Collapse
|
34
|
Zhu Y, Wang Q, Guo W, Gao Z, Wang Y, Xu Y, Liu Y, Ma Z, Yan F, Li J. Screening and identification of salt-tolerance genes in Sophora alopecuroides and functional verification of SaAQP. PLANTA 2021; 254:77. [PMID: 34535825 DOI: 10.1007/s00425-021-03726-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/20/2021] [Accepted: 09/06/2021] [Indexed: 06/13/2023]
Abstract
Overexpression of SaAQP can improve the salt tolerance of transgenic soybean hairy roots and A. thaliana. Salt stress severely affects crop yield and food security. There is a need to improve the salt tolerance of crops, but the discovery and utilization of salt-tolerance genes remains limited. Owing to its strong stress tolerance, Sophora alopecuroides is ideal for the identification of salt-tolerance genes. Therefore, we aimed to screen and identify the salt-tolerance genes in S. alopecuroides. With a yeast expression library of seedlings, salt-tolerant genes were screened using a salt-containing medium to simulate salt stress. By combining salt-treatment screening and transcriptome sequencing, 11 candidate genes related to salt tolerance were identified, including genes for peroxidase, inositol methyltransferase, aquaporin, cysteine synthase, pectinesterase, and WRKY. The expression dynamics of candidate genes were analyzed after salt treatment of S. alopecuroides, and salt tolerance was verified in yeast BY4743. The candidate genes participated in the salt-stress response in S. alopecuroides, and their overexpression significantly improved the salt tolerance of yeast. Salt tolerance mediated by SaAQP was further verified in soybean hairy roots and Arabidopsis thaliana, and it was found that SaAQP might enhance the salt tolerance of A. thaliana by participating in a reactive oxygen species scavenging mechanism. This result provides new genetic resources in plant breeding for salt resistance.
Collapse
Affiliation(s)
- Youcheng Zhu
- College of Plant Science, Jilin University, 5333 Xi'an Road, Changchun City, China
| | - Qingyu Wang
- College of Plant Science, Jilin University, 5333 Xi'an Road, Changchun City, China
| | - Wenyun Guo
- College of Plant Science, Jilin University, 5333 Xi'an Road, Changchun City, China
| | - Ziwei Gao
- College of Plant Science, Jilin University, 5333 Xi'an Road, Changchun City, China
| | - Ying Wang
- College of Plant Science, Jilin University, 5333 Xi'an Road, Changchun City, China
| | - Yang Xu
- College of Plant Science, Jilin University, 5333 Xi'an Road, Changchun City, China
| | - Yajing Liu
- College of Plant Science, Jilin University, 5333 Xi'an Road, Changchun City, China
| | - Zhipeng Ma
- College of Plant Science, Jilin University, 5333 Xi'an Road, Changchun City, China
| | - Fan Yan
- College of Plant Science, Jilin University, 5333 Xi'an Road, Changchun City, China.
| | - Jingwen Li
- College of Plant Science, Jilin University, 5333 Xi'an Road, Changchun City, China.
| |
Collapse
|
35
|
Caicedo-Lopez LH, Guevara-Gonzalez RG, Andrade JE, Esquivel-Delgado A, Perez-Matzumoto AE, Torres-Pacheco I, Contreras-Medina LM. Effect of hydric stress-related acoustic emission on transcriptional and biochemical changes associated with a water deficit in Capsicum annuum L. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2021; 165:251-264. [PMID: 34082331 DOI: 10.1016/j.plaphy.2021.05.011] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/17/2021] [Accepted: 05/05/2021] [Indexed: 06/12/2023]
Abstract
At specific vibration frequencies like ones generated by insects such as caterpillar chewing and bee's buzz-pollination turn on the plants secondary metabolism and their respective pathways gets activated. Thus, studies report that vibrations and sound waves applied to plants improves their fitness performance. Commonly, acoustic treatments for plants have used arbitrarily random frequencies. In this work, a group of signals obtained from hydric-stressed plants was recorded as vibrational patterns using a laser vibrometer. These vibration-signals were classified as representative of each condition and then externally applied as Acoustic Emission Patterns (AEP). The present research hypothesized that specific vibration frequencies could "emulate" a plant signal through mechanical energy based on tplant's ability to recognize vibration pattern similarity to a hydric status. This investigation aimed to apply the AEP's as characteristic vibrations classified as Low hydric stress (LHS), medium hydric stress (MHS), and high hydric stress (HHS) to evaluate their effect on healthy-well watered plants at two developmental stages. In the vegetative stage, the gene expression related to antioxidant and hydric stress responses was assessed. The LHS, MHS, and HHS acoustic treatments up-regulated the peroxidase (Pod) (~2.8, 1.9, and 3.6-fold change, respectively). The superoxide dismutase (Mn-sod) and phenylalanine ammonia-lyase (Pal) genes were up-regulated by HHS (~0.23 and ~0.55-fold change, respectively) and, the chalcone synthase (Chs) gene was induced by MHS (~0.63-fold-change). At the fructification stage, the MHS treatment induced a significant increase in Capsaicin content (5.88-fold change), probably through the at3and kas gene activation. Findings are correlated for a better understanding of plant responses to different multi frequency-signals tones from vibrations with potential for agricultural applications.
Collapse
Affiliation(s)
- Laura Helena Caicedo-Lopez
- Biosystems Engineering Group, Faculty of Engineering, Autonomous University of Queretaro-Campus Amazcala, El Marques, Queretaro, Mexico; Group of Basic and Applied Bioengineering, Faculty of Engineering, Autonomous University of Queretaro-Campus Amazcala, El Marqués, Querétaro, Mexico
| | - Ramon Gerardo Guevara-Gonzalez
- Biosystems Engineering Group, Faculty of Engineering, Autonomous University of Queretaro-Campus Amazcala, El Marques, Queretaro, Mexico
| | - Juan E Andrade
- Department of Food Science and Human Nutrition, The University of Illinois at Urbana-Champaign, Champaign, IL, 61801, USA
| | - Adolfo Esquivel-Delgado
- Physical Metrology, National Metrology Center (CENAM) km 4.5 Carretera a Los Cues C.P. 76246, El Marqués, Qro, Mexico
| | | | - Irineo Torres-Pacheco
- Biosystems Engineering Group, Faculty of Engineering, Autonomous University of Queretaro-Campus Amazcala, El Marques, Queretaro, Mexico
| | - Luis Miguel Contreras-Medina
- Group of Basic and Applied Bioengineering, Faculty of Engineering, Autonomous University of Queretaro-Campus Amazcala, El Marqués, Querétaro, Mexico.
| |
Collapse
|
36
|
Bai J, Wang X, Yao X, Chen X, Lu K, Hu Y, Wang Z, Mu Y, Zhang L, Dong H. Rice aquaporin OsPIP2;2 is a water-transporting facilitator in relevance to drought-tolerant responses. PLANT DIRECT 2021; 5:e338. [PMID: 34430793 PMCID: PMC8365552 DOI: 10.1002/pld3.338] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/18/2020] [Revised: 04/20/2021] [Accepted: 06/21/2021] [Indexed: 05/30/2023]
Abstract
In rice (Oryza sativa), the PLASMA MEMBRANE INTRINSIC PROTEIN (PIP) family of aquaporin has 11 members, OsPIP1;1 to OsPIP1;3, and OsPIP2;1 to OsPIP2;8, which are hypothesized to facilitate the transport of H2O and other small compounds across cell membranes. To date, however, only OsPIP1;2, OsPIP2;1, and OsPIP2;4 have been demonstrated for substrate selectivity in their source plant (rice). In this study, OsPIP2;2 was characterized as the most efficient facilitator of H2O transport across cell membranes in comparison with the other 10 OsPIPs. In concomitant tests of all OsPIPs, four genes (OsPIP1;3, OsPIP2;1, OsPIP2;2, and OsPIP2;4) were induced to express in leaves of rice plants following a physiological drought stress, while OsPIP2;2 was expressed to the highest level. After de novo expression in frog oocytes and yeast cells, the four OsPIP proteins were localized to the plasma membranes in trimer and tetramer and displayed the activity to increase the membrane permeability to H2O. In comparison, OsPIP2;2 was most supportive to H2O import to oocytes and yeast cells. After de novo expression in tobacco protoplasts, OsPIP2;2 exceeded OsPIP1;3, OsPIP2;1, and OsPIP2;4 to support H2O transport across the plasma membranes. OsPIP2;2-mediated H2O transport was accompanied by drought-tolerant responses, including increases in concentrations of proline and polyamines, both of which are physiological markers of drought tolerance. In rice protoplasts, H2O transport and drought-tolerant responses, which included expression of marker genes of drought tolerance pathway, were considerably enhanced by OsPIP2;2 overexpression but strongly inhibited by the gene silencing. Furthermore, OsPIP2;2 played a role in maintenance of the cell membrane integrity and effectively protected rice cells from electrolyte leakage caused by the physiological drought stress. These results suggest that OsPIP2;2 is a predominant facilitator of H2O transport in relevance to drought tolerance in the plant.
Collapse
Affiliation(s)
- Jiaqi Bai
- College of Plant ProtectionShandong Agricultural UniversityTaianChina
- College of Plant ProtectionNanjing Agricultural UniversityNanjingChina
| | - Xuan Wang
- State Key Laboratory of Crop BiologyShandong Agricultural UniversityTaianChina
- School of Life SciencesNanjing UniversityNanjingChina
| | - Xiaohui Yao
- College of Plant ProtectionShandong Agricultural UniversityTaianChina
| | - Xiaochen Chen
- College of Plant ProtectionNanjing Agricultural UniversityNanjingChina
| | - Kai Lu
- College of Plant ProtectionShandong Agricultural UniversityTaianChina
| | - Yiqun Hu
- College of Plant ProtectionNanjing Agricultural UniversityNanjingChina
- Institute of Plant Protection and Agroproduct SafetyAnhui Academy of Agricultural SciencesHefeiChina
| | - Zuodong Wang
- College of Plant ProtectionShandong Agricultural UniversityTaianChina
| | - Yanjie Mu
- College of Plant ProtectionShandong Agricultural UniversityTaianChina
| | - Liyuan Zhang
- College of Plant ProtectionShandong Agricultural UniversityTaianChina
- State Key Laboratory of Crop BiologyShandong Agricultural UniversityTaianChina
| | - Hansong Dong
- College of Plant ProtectionShandong Agricultural UniversityTaianChina
- College of Plant ProtectionNanjing Agricultural UniversityNanjingChina
- State Key Laboratory of Crop BiologyShandong Agricultural UniversityTaianChina
| |
Collapse
|
37
|
Baltazar M, Correia S, Guinan KJ, Sujeeth N, Bragança R, Gonçalves B. Recent Advances in the Molecular Effects of Biostimulants in Plants: An Overview. Biomolecules 2021; 11:biom11081096. [PMID: 34439763 PMCID: PMC8394449 DOI: 10.3390/biom11081096] [Citation(s) in RCA: 29] [Impact Index Per Article: 9.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/23/2021] [Revised: 07/17/2021] [Accepted: 07/21/2021] [Indexed: 01/10/2023] Open
Abstract
As the world develops and population increases, so too does the demand for higher agricultural output with lower resources. Plant biostimulants appear to be one of the more prominent sustainable solutions, given their natural origin and their potential to substitute conventional methods in agriculture. Classified based on their source rather than constitution, biostimulants such as humic substances (HS), protein hydrolysates (PHs), seaweed extracts (SWE) and microorganisms have a proven potential in improving plant growth, increasing crop production and quality, as well as ameliorating stress effects. However, the multi-molecular nature and varying composition of commercially available biostimulants presents challenges when attempting to elucidate their underlying mechanisms. While most research has focused on the broad effects of biostimulants in crops, recent studies at the molecular level have started to unravel the pathways triggered by certain products at the cellular and gene level. Understanding the molecular influences involved could lead to further refinement of these treatments. This review comprises the most recent findings regarding the use of biostimulants in plants, with particular focus on reports of their molecular influence.
Collapse
Affiliation(s)
- Miguel Baltazar
- Centre for the Research and Technology of Agro-Environmental and Biological Sciences (CITAB), University of Trás-os-Montes and Alto Douro, 5000-801 Vila Real, Portugal; (S.C.); (B.G.)
- Institute for Innovation, Capacity Building and Sustainability of Agri-Food Production (Inov4Agro), University of Trás-os-Montes and Alto Douro, 5000-801 Vila Real, Portugal
- Correspondence:
| | - Sofia Correia
- Centre for the Research and Technology of Agro-Environmental and Biological Sciences (CITAB), University of Trás-os-Montes and Alto Douro, 5000-801 Vila Real, Portugal; (S.C.); (B.G.)
- Institute for Innovation, Capacity Building and Sustainability of Agri-Food Production (Inov4Agro), University of Trás-os-Montes and Alto Douro, 5000-801 Vila Real, Portugal
| | - Kieran J. Guinan
- BioAtlantis Ltd., Clash Industrial Estate, Tralee, V92 RWV5 County Kerry, Ireland; (K.J.G.); (N.S.)
| | - Neerakkal Sujeeth
- BioAtlantis Ltd., Clash Industrial Estate, Tralee, V92 RWV5 County Kerry, Ireland; (K.J.G.); (N.S.)
| | - Radek Bragança
- BioComposites Centre, Bangor University, Bangor LL57 2UW, UK;
| | - Berta Gonçalves
- Centre for the Research and Technology of Agro-Environmental and Biological Sciences (CITAB), University of Trás-os-Montes and Alto Douro, 5000-801 Vila Real, Portugal; (S.C.); (B.G.)
- Institute for Innovation, Capacity Building and Sustainability of Agri-Food Production (Inov4Agro), University of Trás-os-Montes and Alto Douro, 5000-801 Vila Real, Portugal
| |
Collapse
|
38
|
Singh RK, Prasad M. Delineating the epigenetic regulation of heat and drought response in plants. Crit Rev Biotechnol 2021; 42:548-561. [PMID: 34289772 DOI: 10.1080/07388551.2021.1946004] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/26/2023]
Abstract
Being sessile in nature, plants cannot overlook the incursion of unfavorable environmental conditions, including heat and drought. Heat and drought severely affect plant growth, development, reproduction and therefore productivity which poses a severe threat to global food security. Plants respond to these hostile environmental circumstances by rearranging their genomic and molecular architecture. One such modification commonly known as epigenetic changes involves the perishable to inheritable changes in DNA or DNA-binding histone proteins leading to modified chromatin organization. Reversible epigenetic modifications include DNA methylation, exchange of histone variants, histone methylation, histone acetylation, ATP-dependent nucleosome remodeling, and others. These modifications are employed to regulate the spatial and temporal expression of genes in response to external stimuli or specific developmental requirements. Understanding the epigenetic regulation of stress-related gene expression in response to heat and drought would commence manifold avenues for crop improvement through molecular breeding or biotechnological approaches.
Collapse
Affiliation(s)
| | - Manoj Prasad
- National Institute of Plant Genome Research, New Delhi, India
| |
Collapse
|
39
|
Lin R, Zheng J, Pu L, Wang Z, Mei Q, Zhang M, Jian S. Genome-wide identification and expression analysis of aquaporin family in Canavalia rosea and their roles in the adaptation to saline-alkaline soils and drought stress. BMC PLANT BIOLOGY 2021; 21:333. [PMID: 34256694 PMCID: PMC8278772 DOI: 10.1186/s12870-021-03034-1] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/12/2021] [Accepted: 05/03/2021] [Indexed: 05/04/2023]
Abstract
BACKGROUND Canavalia rosea (Sw.) DC. (bay bean) is an extremophile halophyte that is widely distributed in coastal areas of the tropics and subtropics. Seawater and drought tolerance in this species may be facilitated by aquaporins (AQPs), channel proteins that transport water and small molecules across cell membranes and thereby maintain cellular water homeostasis in the face of abiotic stress. In C. rosea, AQP diversity, protein features, and their biological functions are still largely unknown. RESULTS We describe the action of AQPs in C. rosea using evolutionary analyses coupled with promoter and expression analyses. A total of 37 AQPs were identified in the C. rosea genome and classified into five subgroups: 11 plasma membrane intrinsic proteins, 10 tonoplast intrinsic proteins, 11 Nod26-like intrinsic proteins, 4 small and basic intrinsic proteins, and 1 X-intrinsic protein. Analysis of RNA-Seq data and targeted qPCR revealed organ-specific expression of aquaporin genes and the involvement of some AQP members in adaptation of C. rosea to extreme coral reef environments. We also analyzed C. rosea sequences for phylogeny reconstruction, protein modeling, cellular localizations, and promoter analysis. Furthermore, one of PIP1 gene, CrPIP1;5, was identified as functional using a yeast expression system and transgenic overexpression in Arabidopsis. CONCLUSIONS Our results indicate that AQPs play an important role in C. rosea responses to saline-alkaline soils and drought stress. These findings not only increase our understanding of the role AQPs play in mediating C. rosea adaptation to extreme environments, but also improve our knowledge of plant aquaporin evolution more generally.
Collapse
Affiliation(s)
- Ruoyi Lin
- Guangdong, Provincial Key Laboratory of Applied Botany & Key Laboratory of South China Agricultural Plant Molecular Analysis and Genetic Improvement, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, 510650, China
- University of the Chinese Academy of Sciences, Beijing, 100039, China
| | - Jiexuan Zheng
- Guangdong, Provincial Key Laboratory of Applied Botany & Key Laboratory of South China Agricultural Plant Molecular Analysis and Genetic Improvement, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, 510650, China
- University of the Chinese Academy of Sciences, Beijing, 100039, China
| | - Lin Pu
- Guangdong, Provincial Key Laboratory of Applied Botany & Key Laboratory of South China Agricultural Plant Molecular Analysis and Genetic Improvement, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, 510650, China
- University of the Chinese Academy of Sciences, Beijing, 100039, China
| | - Zhengfeng Wang
- Guangdong, Provincial Key Laboratory of Applied Botany & Key Laboratory of South China Agricultural Plant Molecular Analysis and Genetic Improvement, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, 510650, China
- Key Laboratory of Vegetation Restoration and Management of Degraded Ecosystems, Center for Plant Ecology, Core Botanical Gardens, Chinese Academy of Sciences, Guangzhou, 510650, China
- Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou), Guangzhou, 511458, China
| | - Qiming Mei
- Guangdong, Provincial Key Laboratory of Applied Botany & Key Laboratory of South China Agricultural Plant Molecular Analysis and Genetic Improvement, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, 510650, China
- Key Laboratory of Vegetation Restoration and Management of Degraded Ecosystems, Center for Plant Ecology, Core Botanical Gardens, Chinese Academy of Sciences, Guangzhou, 510650, China
- Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou), Guangzhou, 511458, China
| | - Mei Zhang
- Guangdong, Provincial Key Laboratory of Applied Botany & Key Laboratory of South China Agricultural Plant Molecular Analysis and Genetic Improvement, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, 510650, China.
- Center of Economic Botany, Core Botanical Gardens, Chinese Academy of Sciences, Guangzhou, 510650, China.
| | - Shuguang Jian
- Guangdong, Provincial Key Laboratory of Applied Botany & Key Laboratory of South China Agricultural Plant Molecular Analysis and Genetic Improvement, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, 510650, China.
- Key Laboratory of Vegetation Restoration and Management of Degraded Ecosystems, Center for Plant Ecology, Core Botanical Gardens, Chinese Academy of Sciences, Guangzhou, 510650, China.
- Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou), Guangzhou, 511458, China.
- CAS Engineering Laboratory for Vegetation Ecosystem Restoration On Islands and Coastal Zones, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, 510650, China.
| |
Collapse
|
40
|
Alterations of Endogenous Hormones, Antioxidant Metabolism, and Aquaporin Gene Expression in Relation to γ-Aminobutyric Acid-Regulated Thermotolerance in White Clover. Antioxidants (Basel) 2021; 10:antiox10071099. [PMID: 34356332 PMCID: PMC8301151 DOI: 10.3390/antiox10071099] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/17/2021] [Revised: 07/01/2021] [Accepted: 07/02/2021] [Indexed: 11/30/2022] Open
Abstract
Persistent high temperature decreases the yield and quality of crops, including many important herbs. White clover (Trifolium repens) is a perennial herb with high feeding and medicinal value, but is sensitive to temperatures above 30 °C. The present study was conducted to elucidate the impact of changes in endogenous γ-aminobutyric acid (GABA) level by exogenous GABA pretreatment on heat tolerance of white clover, associated with alterations in endogenous hormones, antioxidant metabolism, and aquaporin-related gene expression in root and leaf of white clover plants under high-temperature stress. Our results reveal that improvement in endogenous GABA level in leaf and root by GABA pretreatment could significantly alleviate the damage to white clover during high-temperature stress, as demonstrated by enhancements in cell membrane stability, photosynthetic capacity, and osmotic adjustment ability, as well as lower oxidative damage and chlorophyll loss. The GABA significantly enhanced gene expression and enzyme activities involved in antioxidant defense, including superoxide dismutase, catalase, peroxidase, and key enzymes of the ascorbic acid–glutathione cycle, thus reducing the accumulation of reactive oxygen species and the oxidative injury to membrane lipids and proteins. The GABA also increased endogenous indole-3-acetic acid content in roots and leaves and cytokinin content in leaves, associated with growth maintenance and reduced leaf senescence under heat stress. The GABA significantly upregulated the expression of PIP1-1 and PIP2-7 in leaves and the TIP2-1 expression in leaves and roots under high temperature, and also alleviated the heat-induced inhibition of PIP1-1, PIP2-2, TIP2-2, and NIP1-2 expression in roots, which could help to improve the water transportation and homeostasis from roots to leaves. In addition, the GABA-induced aquaporins expression and decline in endogenous abscisic acid level could improve the heat dissipation capacity through maintaining higher stomatal opening and transpiration in white clovers under high-temperature stress.
Collapse
|
41
|
Venisse JS, Õunapuu-Pikas E, Dupont M, Gousset-Dupont A, Saadaoui M, Faize M, Chen S, Chen S, Petel G, Fumanal B, Roeckel-Drevet P, Sellin A, Label P. Genome-Wide Identification, Structure Characterization, and Expression Pattern Profiling of the Aquaporin Gene Family in Betula pendula. Int J Mol Sci 2021; 22:7269. [PMID: 34298887 PMCID: PMC8304918 DOI: 10.3390/ijms22147269] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/19/2021] [Revised: 06/29/2021] [Accepted: 06/30/2021] [Indexed: 01/12/2023] Open
Abstract
Aquaporin water channels (AQPs) constitute a large family of transmembrane proteins present throughout all kingdoms of life. They play key roles in the flux of water and many solutes across the membranes. The AQP diversity, protein features, and biological functions of silver birch are still unknown. A genome analysis of Betula pendula identified 33 putative genes encoding full-length AQP sequences (BpeAQPs). They are grouped into five subfamilies, representing ten plasma membrane intrinsic proteins (PIPs), eight tonoplast intrinsic proteins (TIPs), eight NOD26-like intrinsic proteins (NIPs), four X intrinsic proteins (XIPs), and three small basic intrinsic proteins (SIPs). The BpeAQP gene structure is conserved within each subfamily, with exon numbers ranging from one to five. The predictions of the aromatic/arginine selectivity filter (ar/R), Froger's positions, specificity-determining positions, and 2D and 3D biochemical properties indicate noticeable transport specificities to various non-aqueous substrates between members and/or subfamilies. Nevertheless, overall, the BpePIPs display mostly hydrophilic ar/R selective filter and lining-pore residues, whereas the BpeTIP, BpeNIP, BpeSIP, and BpeXIP subfamilies mostly contain hydrophobic permeation signatures. Transcriptional expression analyses indicate that 23 BpeAQP genes are transcribed, including five organ-related expressions. Surprisingly, no significant transcriptional expression is monitored in leaves in response to cold stress (6 °C), although interesting trends can be distinguished and will be discussed, notably in relation to the plasticity of this pioneer species, B. pendula. The current study presents the first detailed genome-wide analysis of the AQP gene family in a Betulaceae species, and our results lay a foundation for a better understanding of the specific functions of the BpeAQP genes in the responses of the silver birch trees to cold stress.
Collapse
Affiliation(s)
- Jean-Stéphane Venisse
- Université Clermont Auvergne, INRAE, PIAF, 63000 Clermont-Ferrand, France; (M.D.); (A.G.-D.); (M.S.); (G.P.); (B.F.); (P.R.-D.)
| | - Eele Õunapuu-Pikas
- Institute of Ecology and Earth Sciences, University of Tartu, 51005 Tartu, Estonia; (E.Õ.-P.); (A.S.)
| | - Maxime Dupont
- Université Clermont Auvergne, INRAE, PIAF, 63000 Clermont-Ferrand, France; (M.D.); (A.G.-D.); (M.S.); (G.P.); (B.F.); (P.R.-D.)
| | - Aurélie Gousset-Dupont
- Université Clermont Auvergne, INRAE, PIAF, 63000 Clermont-Ferrand, France; (M.D.); (A.G.-D.); (M.S.); (G.P.); (B.F.); (P.R.-D.)
| | - Mouadh Saadaoui
- Université Clermont Auvergne, INRAE, PIAF, 63000 Clermont-Ferrand, France; (M.D.); (A.G.-D.); (M.S.); (G.P.); (B.F.); (P.R.-D.)
- National Institute of Agronomy of Tunisia (INAT), Crop Improvement Laboratory, INRAT, Tunis CP 1004, Tunisia
| | - Mohamed Faize
- Laboratory of Plant Biotechnology, Ecology and Ecosystem Valorization, Faculty of Sciences, University Chouaib Doukkali, El Jadida 24000, Morocco;
| | - Song Chen
- State Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, 26 Hexing Road, Harbin 150040, China; (S.C.); (S.C.)
| | - Su Chen
- State Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, 26 Hexing Road, Harbin 150040, China; (S.C.); (S.C.)
| | - Gilles Petel
- Université Clermont Auvergne, INRAE, PIAF, 63000 Clermont-Ferrand, France; (M.D.); (A.G.-D.); (M.S.); (G.P.); (B.F.); (P.R.-D.)
| | - Boris Fumanal
- Université Clermont Auvergne, INRAE, PIAF, 63000 Clermont-Ferrand, France; (M.D.); (A.G.-D.); (M.S.); (G.P.); (B.F.); (P.R.-D.)
| | - Patricia Roeckel-Drevet
- Université Clermont Auvergne, INRAE, PIAF, 63000 Clermont-Ferrand, France; (M.D.); (A.G.-D.); (M.S.); (G.P.); (B.F.); (P.R.-D.)
| | - Arne Sellin
- Institute of Ecology and Earth Sciences, University of Tartu, 51005 Tartu, Estonia; (E.Õ.-P.); (A.S.)
| | - Philippe Label
- Université Clermont Auvergne, INRAE, PIAF, 63000 Clermont-Ferrand, France; (M.D.); (A.G.-D.); (M.S.); (G.P.); (B.F.); (P.R.-D.)
| |
Collapse
|
42
|
Ahmed S, Kouser S, Asgher M, Gandhi SG. Plant aquaporins: A frontward to make crop plants drought resistant. PHYSIOLOGIA PLANTARUM 2021; 172:1089-1105. [PMID: 33826759 DOI: 10.1111/ppl.13416] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/29/2020] [Revised: 02/10/2021] [Accepted: 04/03/2021] [Indexed: 05/25/2023]
Abstract
Drought stress alters gene expression and causes cellular damage in crop plants. Drought inhibits photosynthesis by reducing the content and the activity of the photosynthetic carbon reduction cycle, ultimately decreasing the crop yield. The role of aquaporins (AQP) in improving the growth and adaptation of crop plants under drought stress is of importance. AQP form channels and control water transport in and out of the cells and are associated with drought tolerance mechanisms. The current review addresses: (1) the evolution of AQPs in plants, (2) the classification of plant AQPs, (3) the role of AQPs in drought alleviation in crop plants, and (4) the phytohormone crosstalk with AQPs in crops exposed to drought stress.
Collapse
Affiliation(s)
- Sajad Ahmed
- Plant Biotechnology Division, Indian Institute of Integrative Medicine (CSIR), Jammu, India
| | - Shaista Kouser
- Department of Botany, School of Biosciences and Biotechnology, Baba Ghulam Shah Badshah University, Rajouri, India
| | - Mohd Asgher
- Plant Physiology and Biochemistry Laboratory, Department of Botany, School of Biosciences and Biotechnology, Baba Ghulam Shah Badshah University, Rajouri, India
| | - Sumit G Gandhi
- Plant Biotechnology Division, Indian Institute of Integrative Medicine (CSIR), Jammu, India
- Academy of Scientific & Innovative Research (AcSIR), Ghaziabad, India
| |
Collapse
|
43
|
Khan MIR, Palakolanu SR, Chopra P, Rajurkar AB, Gupta R, Iqbal N, Maheshwari C. Improving drought tolerance in rice: Ensuring food security through multi-dimensional approaches. PHYSIOLOGIA PLANTARUM 2021; 172:645-668. [PMID: 33006143 DOI: 10.1111/ppl.13223] [Citation(s) in RCA: 18] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/02/2020] [Revised: 09/11/2020] [Accepted: 09/29/2020] [Indexed: 05/27/2023]
Abstract
Drought has been highly prevalent around the world especially in Sub-Saharan Africa and South-East Asian countries. Consistent climatic instabilities and unpredictable rainfall patterns are further worsening the situation. Rice is a C3 staple cereal and an important food crop for the majority of the world's population and drought stress is one of the major growth retarding threats for rice that slashes down grain quality and yield. Drought deteriorates rice productivity and induces various acclimation responses that aids in stress mitigation. However, the complexity of traits associated with drought tolerance has made the understanding of drought stress-induced responses in rice a challenging process. An integrative understanding based on physiological adaptations, omics, transgenic and molecular breeding approaches successively backed up to developing drought stress-tolerant rice. The review represents a step forward to develop drought-resilient rice plants by exploiting the knowledge that collaborates with omics-based developments with integrative efforts to ensure the compilation of all the possible strategies undertaken to develop drought stress-tolerant rice.
Collapse
Affiliation(s)
| | - Sudhakar R Palakolanu
- Cell, Molecular Biology and Genetic Engineering Group, International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Hyderabad, India
| | | | - Ashish B Rajurkar
- Institute for Genomic Biology, University of Illinois, Urbana-Champaign, Illinois, USA
| | - Ravi Gupta
- Department of Botany, Jamia Hamdard, New Delhi, India
| | | | - Chirag Maheshwari
- Agricultural Energy and Power Division, ICAR-Central Institute of Agricultural Engineering, Bhopal, India
| |
Collapse
|
44
|
Patel J, Mishra A. Plant aquaporins alleviate drought tolerance in plants by modulating cellular biochemistry, root-architecture, and photosynthesis. PHYSIOLOGIA PLANTARUM 2021; 172:1030-1044. [PMID: 33421148 DOI: 10.1111/ppl.13324] [Citation(s) in RCA: 27] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/27/2020] [Revised: 12/04/2020] [Accepted: 12/21/2020] [Indexed: 05/09/2023]
Abstract
Water is a vital resource for plants to grow, thrive, and complete their life cycle. In recent years, drastic changes in the climate, especially drought frequency and severity, have increased, which reduces agricultural productivity worldwide. Aquaporins are membrane channels belonging to the major intrinsic protein superfamily, which play an essential role in cellular water and osmotic homeostasis of plants under both control and water deficit conditions. A genome-wide search reveals the vast availability of aquaporin isoforms, phylogenetic relationships, different families, conserved residues, chromosomal locations, and gene structure of aquaporins. Furthermore, aquaporins gating and subcellular trafficking are commonly controlled by phosphorylation, cytosolic pH, divalent cations, reactive oxygen species, and stoichiometry. Researchers have identified their involvement in regulating hydraulic conductance, root system architecture, modulation of abiotic stress-related genes, seed viability and germination, phloem loading, xylem water exit, photosynthetic parameters, and post-drought recovery. Remarkable effects following the change in aquaporin activity and/or gene expression have been observed on root water transport properties, nutrient acquisition, physiology, transpiration, stomatal aperture, gas exchange, and water use efficiency. The present review highlights the role of different aquaporin homologs under water-deficit stress condition in model and crop plants. Moreover, the opportunity and challenges encountered to explore aquaporins for engineering drought-tolerant crop plants are also discussed here.
Collapse
Affiliation(s)
- Jaykumar Patel
- Division of Applied Phycology and Biotechnology, CSIR-Central Salt and Marine Chemicals Research Institute, Bhavnagar, India
- Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, India
| | - Avinash Mishra
- Division of Applied Phycology and Biotechnology, CSIR-Central Salt and Marine Chemicals Research Institute, Bhavnagar, India
- Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, India
| |
Collapse
|
45
|
Plant transporters involved in combating boron toxicity: beyond 3D structures. Biochem Soc Trans 2021; 48:1683-1696. [PMID: 32779723 PMCID: PMC7458394 DOI: 10.1042/bst20200164] [Citation(s) in RCA: 14] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/22/2020] [Revised: 07/15/2020] [Accepted: 07/17/2020] [Indexed: 12/12/2022]
Abstract
Membrane transporters control the movement and distribution of solutes, including the disposal or compartmentation of toxic substances that accumulate in plants under adverse environmental conditions. In this minireview, in the light of the approaching 100th anniversary of unveiling the significance of boron to plants (K. Warington, 1923; Ann. Bot.37, 629) we discuss the current state of the knowledge on boron transport systems that plants utilise to combat boron toxicity. These transport proteins include: (i) nodulin-26-like intrinsic protein-types of aquaporins, and (ii) anionic efflux (borate) solute carriers. We describe the recent progress made on the structure–function relationships of these transport proteins and point out that this progress is integral to quantitative considerations of the transporter's roles in tissue boron homeostasis. Newly acquired knowledge at the molecular level has informed on the transport mechanics and conformational states of boron transport systems that can explain their impact on cell biology and whole plant physiology. We expect that this information will form the basis for engineering transporters with optimised features to alleviate boron toxicity tolerance in plants exposed to suboptimal soil conditions for sustained food production.
Collapse
|
46
|
Tailor A, Bhatla SC. Polyamine homeostasis modulates plasma membrane- and tonoplast-associated aquaporin expression in etiolated salt-stressed sunflower (Helianthus annuus L.) seedlings. PROTOPLASMA 2021; 258:661-672. [PMID: 33404919 DOI: 10.1007/s00709-020-01589-8] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/12/2020] [Accepted: 11/23/2020] [Indexed: 05/08/2023]
Abstract
Salt stress adversely affects plants by causing osmotic and ionic imbalance. Cellular osmotic adjustment occurs by modulation of water fluxes. Polyamines (PAs) are often advocated to be involved in osmoregulation during stressful conditions, and thus, they serve as potential "osmolytes." Aquaporins (AQPs), the water-transporting channels, are expected to play crucial roles in osmoregulation. Present investigations on etiolated sunflower seedlings demonstrate a possible correlation between PA homeostasis and maintenance of water balance, as a function of modulation of the abundance of two major AQP subfamilies: PIP2 (plasma membrane intrinsic protein 2) and TIP1 (tonoplast intrinsic protein 1). Salt stress (120 mM NaCl) restricts growth of sunflower seedlings and induces reduction in relative water content (RWC). This accompanies enhanced abundance of PIP2s and TIP1s in seedling roots and that of TIP1s in cotyledons, as revealed by Western blot analysis of AQP isoforms and also their imaging by confocal laser scanning microscopy (CLSM). Raising seedlings in the presence of 500 μM of DFMA (DL-α-difluoromethylarginine) or DFMO (DL-α-difluoromethylornithine), which are potent inhibitors of PA biosynthesis enzymes (arginine decarboxylase (ADC) and ornithine decarboxylase (ODC), respectively), significantly promotes root extension, irrespective of NaCl stress, and results in further lowering of salt-induced reduction in RWC in roots and cotyledons. This correlates with enhanced accumulation of both PIP2s and TIP1s in seedling roots, but not in cotyledons. Present work, therefore, implicates PA homeostasis in the maintenance of water status of sunflower seedlings, possibly via regulation of abundance and distribution of AQP isoforms associated with the plasma membrane and tonoplast.
Collapse
Affiliation(s)
- Aditi Tailor
- Department of Botany, University of Delhi, Delhi, 110007, India
| | - Satish C Bhatla
- Department of Botany, University of Delhi, Delhi, 110007, India.
| |
Collapse
|
47
|
Sudhakaran S, Thakral V, Padalkar G, Rajora N, Dhiman P, Raturi G, Sharma Y, Tripathi DK, Deshmukh R, Sharma TR, Sonah H. Significance of solute specificity, expression, and gating mechanism of tonoplast intrinsic protein during development and stress response in plants. PHYSIOLOGIA PLANTARUM 2021; 172:258-274. [PMID: 33723851 DOI: 10.1111/ppl.13386] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/03/2020] [Revised: 03/01/2021] [Accepted: 03/05/2021] [Indexed: 06/12/2023]
Abstract
Tonoplast intrinsic proteins (TIPs), belonging to the aquaporin family, are transmembrane channels located mostly at the tonoplast of plant cells. The TIPs are known to transport water and many other small solutes such as ammonia, urea, hydrogen peroxide, and glycerol. In the present review, phylogenetic distribution, structure, transport dynamics, gating mechanism, sub-cellular localization, tissue-specific expression, and co-expression of TIPs are discussed to define their versatile role in plants. Based on the phylogenetic distribution, TIPs are classified into five distinct groups with aromatic-arginine (Ar/R) selectivity filters, typical pore-morphology, and tissue-specific gene expression patterns. The tissue-specific expression of TIPs is conserved among diverse plant species, more particularly for TIP3s, which are expressed exclusively in seeds. Studying TIP3 evolution will help to understand seed development and germination. The solute specificity of TIPs plays an imperative role in physiological processes like stomatal movement and vacuolar sequestration as well as in alleviating environmental stress. TIPs also play an important role in growth and developmental processes like radicle protrusion, anther dehiscence, seed germination, cell elongation, and expansion. The gating mechanism of TIPs regulates the solute flow in response to external signals, which helps to maintain the physiological functions of the cell. The information provided in this review is a base to explore TIP's potential in crop improvement programs.
Collapse
Affiliation(s)
- Sreeja Sudhakaran
- Division of Agri-Biotechnology, National Agri-Food Biotechnology Institute (NABI), Mohali, India
- Department of Biotechnology, Panjab University, Chandigarh, India
| | - Vandana Thakral
- Division of Agri-Biotechnology, National Agri-Food Biotechnology Institute (NABI), Mohali, India
- Department of Biotechnology, Panjab University, Chandigarh, India
| | - Gunashri Padalkar
- Division of Agri-Biotechnology, National Agri-Food Biotechnology Institute (NABI), Mohali, India
- Department of Biotechnology, Panjab University, Chandigarh, India
| | - Nitika Rajora
- Division of Agri-Biotechnology, National Agri-Food Biotechnology Institute (NABI), Mohali, India
| | - Pallavi Dhiman
- Division of Agri-Biotechnology, National Agri-Food Biotechnology Institute (NABI), Mohali, India
- Department of Biotechnology, Panjab University, Chandigarh, India
| | - Gaurav Raturi
- Division of Agri-Biotechnology, National Agri-Food Biotechnology Institute (NABI), Mohali, India
- Department of Biotechnology, Panjab University, Chandigarh, India
| | - Yogesh Sharma
- Division of Agri-Biotechnology, National Agri-Food Biotechnology Institute (NABI), Mohali, India
| | - Durgesh K Tripathi
- Amity Institute of Organic Agriculture (AIOA), Amity University Uttar Pradesh, Noida, India
| | - Rupesh Deshmukh
- Division of Agri-Biotechnology, National Agri-Food Biotechnology Institute (NABI), Mohali, India
| | - Tilak Raj Sharma
- Division of Crop Science, Indian Council of Agricultural Research, New Delhi, India
| | - Humira Sonah
- Division of Agri-Biotechnology, National Agri-Food Biotechnology Institute (NABI), Mohali, India
| |
Collapse
|
48
|
Nitrogen Uptake in Plants: The Plasma Membrane Root Transport Systems from a Physiological and Proteomic Perspective. PLANTS 2021; 10:plants10040681. [PMID: 33916130 PMCID: PMC8066207 DOI: 10.3390/plants10040681] [Citation(s) in RCA: 19] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/15/2021] [Revised: 03/26/2021] [Accepted: 03/29/2021] [Indexed: 11/17/2022]
Abstract
Nitrogen nutrition in plants is a key determinant in crop productivity. The availability of nitrogen nutrients in the soil, both inorganic (nitrate and ammonium) and organic (urea and free amino acids), highly differs and influences plant physiology, growth, metabolism, and root morphology. Deciphering this multifaceted scenario is mandatory to improve the agricultural sustainability. In root cells, specific proteins located at the plasma membrane play key roles in the transport and sensing of nitrogen forms. This review outlines the current knowledge regarding the biochemical and physiological aspects behind the uptake of the individual nitrogen forms, their reciprocal interactions, the influences on root system architecture, and the relations with other proteins sustaining fundamental plasma membrane functionalities, such as aquaporins and H+-ATPase. This topic is explored starting from the information achieved in the model plant Arabidopsis and moving to crops in agricultural soils. Moreover, the main contributions provided by proteomics are described in order to highlight the goals and pitfalls of this approach and to get new hints for future studies.
Collapse
|
49
|
Del Buono D, Luzi F, Puglia D. Lignin Nanoparticles: A Promising Tool to Improve Maize Physiological, Biochemical, and Chemical Traits. NANOMATERIALS (BASEL, SWITZERLAND) 2021; 11:846. [PMID: 33810279 PMCID: PMC8066232 DOI: 10.3390/nano11040846] [Citation(s) in RCA: 17] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/09/2021] [Revised: 03/20/2021] [Accepted: 03/24/2021] [Indexed: 11/30/2022]
Abstract
Lignin, and its derivatives, are the subject of current research for the exciting properties shown by this biomass. Particularly attractive are lignin nanoparticles for their eco- and biocompatibility compared to other nanomaterials. In this context, the effect of nanostructured lignin microparticles (LNP), obtained from alkaline lignin by acid treatment, on maize plants was investigated. To this end, maize seeds were primed with LNP at five concentrations: 80 mg L-1 (T80), 312 mg L-1 (T312), 1250 mg L-1 (T1250), 5000 mg L-1 (T5000) and 20,000 mg L-1 (T20000). Concerning the dose applied, LNP prompted positive effects on the first stages of maize development (germination and radicle length). Furthermore, the study of plant growth, biochemical and chemical parameters on the developed plants indicated that concerning the dose applied. LNP stimulated beneficial effects on the seedlings (fresh weight and length of shoots and roots). Besides, specific treatments increased the content of chlorophyll (a and b), carotenoid, and anthocyanin. Finally, the soluble protein content showed a positive trend in response to specific dosages. These effects are significant, given the essential biological function performed by these biomolecules. In conclusion, this research indicates as the nanostructured lignin microparticles can be used, at appropriate dosages, to induce positive biological responses in maize. This beneficial action deserves attention as it candidates LNP for biostimulating a crop through seed priming.
Collapse
Affiliation(s)
- Daniele Del Buono
- Dipartimento di Scienze Agrarie, Alimentari e Ambientali, Università degli Studi di Perugia, Borgo XX Giugno 74, 06121 Perugia, Italy;
| | - Francesca Luzi
- Department of Civil and Environmental Engineering, University of Perugia, Strada di Pentima 4, 05100 Perugia, Italy;
| | - Debora Puglia
- Department of Civil and Environmental Engineering, University of Perugia, Strada di Pentima 4, 05100 Perugia, Italy;
| |
Collapse
|
50
|
Kurowska MM. Aquaporins in Cereals-Important Players in Maintaining Cell Homeostasis under Abiotic Stress. Genes (Basel) 2021; 12:genes12040477. [PMID: 33806192 PMCID: PMC8066221 DOI: 10.3390/genes12040477] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/19/2021] [Revised: 03/18/2021] [Accepted: 03/23/2021] [Indexed: 12/27/2022] Open
Abstract
Cereal productivity is reduced by environmental stresses such as drought, heat, elevated CO2, salinity, metal toxicity and cold. Sometimes, plants are exposed to multiple stresses simultaneously. Plants must be able to make a rapid and adequate response to these environmental stimuli in order to restore their growing ability. The latest research has shown that aquaporins are important players in maintaining cell homeostasis under abiotic stress. Aquaporins are membrane intrinsic proteins (MIP) that form pores in the cellular membranes, which facilitate the movement of water and many other molecules such as ammonia, urea, CO2, micronutrients (silicon and boron), glycerol and reactive oxygen species (hydrogen peroxide) across the cell and intercellular compartments. The present review primarily focuses on the diversity of aquaporins in cereal species, their cellular and subcellular localisation, their expression and their functioning under abiotic stresses. Lastly, this review discusses the potential use of mutants and plants that overexpress the aquaporin-encoding genes to improve their tolerance to abiotic stress.
Collapse
Affiliation(s)
- Marzena Małgorzata Kurowska
- Institute of Biology, Biotechnology and Environmental Protection, Faculty of Natural Sciences, University of Silesia in Katowice, Jagiellońska 28, 40-032 Katowice, Poland
| |
Collapse
|