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Ray D, Chamlagai D, Kumar S, Mukhopadhyay S, Chakrabarty S, Aswal VK, Mitra S. Molecular Insights into the Conformational and Binding Behaviors of Human Serum Albumin Induced by Surface-Active Ionic Liquids. J Phys Chem B 2024; 128:6622-6637. [PMID: 38937939 DOI: 10.1021/acs.jpcb.4c01915] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/29/2024]
Abstract
Extensive research has been carried out to investigate the stability and function of human serum albumin (HSA) when exposed to surface-active ionic liquids (SAILs) with different head groups (imidazolium, morpholinium, and pyridinium) and alkyl chain lengths (ranging from decyl to tetradecyl). Analysis of the protein fluorescence spectra indicates noticeable changes in the secondary structure of HSA with varying concentrations of all SAILs tested. Helicity calculations based on the Fourier transform infrared (FTIR) data show that HSA becomes more organized at the micellar concentration of SAILs, leading to an increased protein activity at this level. Small-angle neutron scattering (SANS) data confirm the formation of a bead-necklace structure between the SAILs and HSA. Atomistic molecular dynamics (MD) simulation results identify several hotspots on the protein surface for interaction with SAIL, which results in the modulation of protein conformational fluctuation and stability. Furthermore, fluorescence resonance energy transfer (FRET) experiments with the intramolecular charge transfer (ICT) probe trans-ethyl p-(dimethylamino) cinnamate (EDAC) demonstrate that higher alkyl chain lengths and SAIL concentrations result in a significantly increased energy transfer efficiency. The findings of this study provide a detailed molecular-level understanding of how the protein structure and function are affected by the presence of SAILs, with potential implications for a wide range of applications involving protein-SAIL composite systems.
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Affiliation(s)
- Dhiman Ray
- Department of Chemistry, North-Eastern Hill University, Shillong 793 022, India
| | - Dipak Chamlagai
- Department of Chemistry, North-Eastern Hill University, Shillong 793 022, India
| | - Sugam Kumar
- Solid State Physics Division, Bhabha Atomic Research Centre, Mumbai 400085, India
| | - Sutanu Mukhopadhyay
- Department of Chemical and Biological Sciences, S. N. Bose National Centre for Basic Sciences, Kolkata 700106, India
| | - Suman Chakrabarty
- Department of Chemical and Biological Sciences, S. N. Bose National Centre for Basic Sciences, Kolkata 700106, India
| | - Vinod K Aswal
- Solid State Physics Division, Bhabha Atomic Research Centre, Mumbai 400085, India
| | - Sivaprasad Mitra
- Department of Chemistry, North-Eastern Hill University, Shillong 793 022, India
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2
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Zhu J, Liu S, Dai L, Yu F, Zhou T, Chen J, Xu J, Yu B, Tang S, Liu Q, Yang XL, Han XL. Elucidating the interaction between equisetin and human serum albumin: A comprehensive study using spectroscopy, microcalorimetry and molecular docking approaches. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2024; 304:123409. [PMID: 37729815 DOI: 10.1016/j.saa.2023.123409] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/03/2023] [Revised: 08/28/2023] [Accepted: 09/12/2023] [Indexed: 09/22/2023]
Abstract
Equisetin, a bioactive compound of marine origin, offers compelling inhibitory properties against HIV-1 transcriptase. To gain comprehensive insights into the interaction of Equisetin with human serum albumin (HSA), we utilized a multipronged approach involving spectroscopy, isothermal titration calorimetry (ITC) and molecular docking. Our fluorescence analyses confirmed that the interaction between Equisetin and HSA results in a significant quenching of HSA's fluorescence, primarily achieved through a dynamic mechanism aided by hydrogen bonding and van der Waals forces. Isothermal titration calorimetry (ITC) measurements revealed an impressive binding affinity of Equisetin for HSA, quantified to be 4.3 × 107 mol L-1. Molecular docking studies illustrated that Equisetin binds at site III of HSA, with specific amino acid residues, GLN-104 and LYS-106, playing a pivotal role. Further, our study discovered that the interaction induces slight unfolding of HSA's polypeptide chain and significant alterations in its secondary structure, thereby triggering the exposure of previously concealed hydrophobic regions. This comprehensive study enhances our understanding of Equisetin's interaction with serum proteins, potentially influencing its pharmacokinetics and pharmacodynamics, and opening avenues for future research and therapeutic applications.
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Affiliation(s)
- Jiahua Zhu
- Key Laboratory of Analytical Chemistry of the State Ethnic Affairs Commission, School of Chemistry and Materials Science, South-Central Minzu University, Wuhan 430074, PR China
| | - Shuzhi Liu
- The Modernization Engineering Technology Research Center of Ethnic Minority Medicine of Hubei Province, School of Pharmaceutical Sciences, South-Central Minzu University, Wuhan 430074, PR China
| | - Le Dai
- Key Laboratory of Analytical Chemistry of the State Ethnic Affairs Commission, School of Chemistry and Materials Science, South-Central Minzu University, Wuhan 430074, PR China
| | - Fan Yu
- Key Laboratory of Analytical Chemistry of the State Ethnic Affairs Commission, School of Chemistry and Materials Science, South-Central Minzu University, Wuhan 430074, PR China
| | - Tao Zhou
- Key Laboratory of Analytical Chemistry of the State Ethnic Affairs Commission, School of Chemistry and Materials Science, South-Central Minzu University, Wuhan 430074, PR China
| | - Jiang Chen
- Key Laboratory of Analytical Chemistry of the State Ethnic Affairs Commission, School of Chemistry and Materials Science, South-Central Minzu University, Wuhan 430074, PR China
| | - Jianming Xu
- Key Laboratory of Analytical Chemistry of the State Ethnic Affairs Commission, School of Chemistry and Materials Science, South-Central Minzu University, Wuhan 430074, PR China
| | - Boren Yu
- Key Laboratory of Analytical Chemistry of the State Ethnic Affairs Commission, School of Chemistry and Materials Science, South-Central Minzu University, Wuhan 430074, PR China
| | - Shuoya Tang
- Key Laboratory of Analytical Chemistry of the State Ethnic Affairs Commission, School of Chemistry and Materials Science, South-Central Minzu University, Wuhan 430074, PR China
| | - Qingpei Liu
- The Modernization Engineering Technology Research Center of Ethnic Minority Medicine of Hubei Province, School of Pharmaceutical Sciences, South-Central Minzu University, Wuhan 430074, PR China
| | - Xiao-Long Yang
- The Modernization Engineering Technology Research Center of Ethnic Minority Medicine of Hubei Province, School of Pharmaceutical Sciences, South-Central Minzu University, Wuhan 430074, PR China
| | - Xiao-Le Han
- Key Laboratory of Analytical Chemistry of the State Ethnic Affairs Commission, School of Chemistry and Materials Science, South-Central Minzu University, Wuhan 430074, PR China.
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Peng M, Xu Y, Wu Y, Cai X, Zhang W, Zheng L, Du E, Fu J. Binding Affinity and Mechanism of Six PFAS with Human Serum Albumin: Insights from Multi-Spectroscopy, DFT and Molecular Dynamics Approaches. TOXICS 2024; 12:43. [PMID: 38250999 PMCID: PMC10819430 DOI: 10.3390/toxics12010043] [Citation(s) in RCA: 6] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/28/2023] [Revised: 12/30/2023] [Accepted: 01/03/2024] [Indexed: 01/23/2024]
Abstract
Per- and Polyfluoroalkyl Substances (PFAS) bioaccumulate in the human body, presenting potential health risks and cellular toxicity. Their transport mechanisms and interactions with tissues and the circulatory system require further investigation. This study investigates the interaction mechanisms of six PFAS with Human Serum Albumin (HSA) using multi-spectroscopy, DFT and a molecular dynamics approach. Multi-spectral analysis shows that perfluorononanoic acid (PFNA) has the best binding capabilities with HSA. The order of binding constants (298 K) is as follows: "Perfluorononanoic Acid (PFNA, 7.81 × 106 L·mol-1) > Perfluoro-2,5-dimethyl-3,6-dioxanonanoic Acid (HFPO-TA, 3.70 × 106 L·mol-1) > Perfluorooctanoic Acid (PFOA, 2.27 × 105 L·mol-1) > Perfluoro-3,6,9-trioxadecanoic Acid (PFO3DA, 1.59 × 105 L·mol-1) > Perfluoroheptanoic Acid (PFHpA, 4.53 × 103 L·mol-1) > Dodecafluorosuberic Acid (DFSA, 1.52 × 103 L·mol-1)". Thermodynamic analysis suggests that PFNA and PFO3DA's interactions with HSA are exothermic, driven primarily by hydrogen bonds or van der Waals interactions. PFHpA, DFSA, PFOA, and HFPO-TA's interactions with HSA, on the other hand, are endothermic processes primarily driven by hydrophobic interactions. Competitive probe results show that the main HSA-PFAS binding site is in the HSA structure's subdomain IIA. These findings are also consistent with the findings of molecular docking. Molecular dynamics simulation (MD) analysis further shows that the lowest binding energy (-38.83 kcal/mol) is fund in the HSA-PFNA complex, indicating that PFNA binds more readily with HSA. Energy decomposition analysis also indicates that van der Waals and electrostatic interactions are the main forces for the HSA-PFAS complexes. Correlation analysis reveals that DFT quantum chemical descriptors related to electrostatic distribution and characteristics like ESP and ALIE are more representative in characterizing HSA-PFAS binding. This study sheds light on the interactions between HSA and PFAS. It guides health risk assessments and control strategies against PFAS, serving as a critical starting point for further public health research.
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Affiliation(s)
- Mingguo Peng
- School of Chemistry and Chemical Engineering, Nanjing University of Science and Technology, Nanjing 210094, China;
- School of Environmental Science and Engineering, Changzhou University, Changzhou 213164, China; (Y.X.); (Y.W.); (X.C.); (W.Z.); (L.Z.)
| | - Yang Xu
- School of Environmental Science and Engineering, Changzhou University, Changzhou 213164, China; (Y.X.); (Y.W.); (X.C.); (W.Z.); (L.Z.)
| | - Yao Wu
- School of Environmental Science and Engineering, Changzhou University, Changzhou 213164, China; (Y.X.); (Y.W.); (X.C.); (W.Z.); (L.Z.)
| | - Xuewen Cai
- School of Environmental Science and Engineering, Changzhou University, Changzhou 213164, China; (Y.X.); (Y.W.); (X.C.); (W.Z.); (L.Z.)
| | - Weihua Zhang
- School of Environmental Science and Engineering, Changzhou University, Changzhou 213164, China; (Y.X.); (Y.W.); (X.C.); (W.Z.); (L.Z.)
| | - Lu Zheng
- School of Environmental Science and Engineering, Changzhou University, Changzhou 213164, China; (Y.X.); (Y.W.); (X.C.); (W.Z.); (L.Z.)
| | - Erdeng Du
- School of Environmental Science and Engineering, Changzhou University, Changzhou 213164, China; (Y.X.); (Y.W.); (X.C.); (W.Z.); (L.Z.)
| | - Jiajun Fu
- School of Chemistry and Chemical Engineering, Nanjing University of Science and Technology, Nanjing 210094, China;
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Sovrlić M, Mrkalić E, Jelić R, Ćendić Serafinović M, Stojanović S, Prodanović N, Tomović J. Effect of Caffeine and Flavonoids on the Binding of Tigecycline to Human Serum Albumin: A Spectroscopic Study and Molecular Docking. Pharmaceuticals (Basel) 2022; 15:266. [PMID: 35337065 PMCID: PMC8951011 DOI: 10.3390/ph15030266] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/26/2022] [Revised: 02/14/2022] [Accepted: 02/18/2022] [Indexed: 11/16/2022] Open
Abstract
Human serum albumin (HSA) has a very significant role in the transport of drugs, in their pharmacokinetic and pharmacodynamic properties, as well as the unbound concentration of drugs in circulating plasma. The aim of this study was to look into the competition between tigecycline (TGC) and alkaloid (ALK) (caffeine (CAF)), and flavonoids (FLAVs) (catechin (CAT), quercetin (QUE), and diosmin (DIO)) in binding to HSA in simulated physiological conditions using multiple spectroscopic measurements and docking simulations. Fluorescence analysis was used to find the binding and quenching properties of double HSA-TGC and triple HSA-TGC-CAF/FLAV systems. The conformational change of the HSA was analyzed using synchronous fluorescence spectroscopy, Fourier transform infrared spectroscopy, and circular dichroism. Obtained results of spectroscopic analyses indicate that triple complexes of HSA-TGC-CAF/FLAVs are formed without problems and have higher binding affinities than double HSA-TGC. In addition, TGC does not change the microenvironments around the tryptophan (Trp) and tyrosine (Tyr) residues in the presence of ALK and FLAVs. Ultimately, the binding affinity, competition, and interaction nature were explored by docking modeling. Computational outcomes are in good accordance with experimentally obtained results. Accordingly, concluding remarks may be very useful for potential interactions between common food components and drugs.
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Affiliation(s)
- Miroslav Sovrlić
- Department of Pharmacy, Faculty of Medical Sciences, University of Kragujevac, Svetozara Markovića 69, 34000 Kragujevac, Serbia; (M.S.); (R.J.); (S.S.); (N.P.); (J.T.)
| | - Emina Mrkalić
- Department of Science, Institute for Information Technologies, University of Kragujevac, Jovana Cvijića bb, 34000 Kragujevac, Serbia
| | - Ratomir Jelić
- Department of Pharmacy, Faculty of Medical Sciences, University of Kragujevac, Svetozara Markovića 69, 34000 Kragujevac, Serbia; (M.S.); (R.J.); (S.S.); (N.P.); (J.T.)
| | - Marina Ćendić Serafinović
- Department of Chemistry, Faculty of Science, University of Kragujevac, Radoja Domanovića 12, 34000 Kragujevac, Serbia;
| | - Stefan Stojanović
- Department of Pharmacy, Faculty of Medical Sciences, University of Kragujevac, Svetozara Markovića 69, 34000 Kragujevac, Serbia; (M.S.); (R.J.); (S.S.); (N.P.); (J.T.)
| | - Nevena Prodanović
- Department of Pharmacy, Faculty of Medical Sciences, University of Kragujevac, Svetozara Markovića 69, 34000 Kragujevac, Serbia; (M.S.); (R.J.); (S.S.); (N.P.); (J.T.)
| | - Jovica Tomović
- Department of Pharmacy, Faculty of Medical Sciences, University of Kragujevac, Svetozara Markovića 69, 34000 Kragujevac, Serbia; (M.S.); (R.J.); (S.S.); (N.P.); (J.T.)
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Singh IR, Yesylevskyy SO, Mitra S. Dietary polyphenols inhibit plasma protein arabinosylation: Biomolecular interaction of genistein and ellagic acid with serum albumins. Biophys Chem 2021; 277:106651. [PMID: 34217110 DOI: 10.1016/j.bpc.2021.106651] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/26/2021] [Revised: 06/22/2021] [Accepted: 06/22/2021] [Indexed: 01/08/2023]
Abstract
The mode of interaction of polyphenolic compounds like genistein (GTN) and ellagic acid (EGA) with human and bovine serum albumin (HSA and BSA, respectively) was found to differ significantly. Stern-Volmer (SV) analysis of the fluorescence quenching data revealed that the binding strength of EGA (1.9 ± 0.09 × 105 M-1) to HSA is about one order of magnitude higher than GTN (2.24 ± 0.06 × 104 M-1). While the static quenching of HSA fluorescence was found to proceed through simple Stern-Volmer (SV) mechanism, a quenching sphere-of-action model was indispensable for BSA. Temperature dependent fluorescence along with a series of other biophysical experiments and ensemble docking calculation revealed that EGA and GTN bind to the serum proteins primarily through the entropy driven process. The α-helical content and the microenvironment near Trp residue of HSA and BSA did not show any appreciable change due to the binding of either GTN or EGA. Interestingly, both GTN and EGA were found to inhibit the formation of advanced glycated end (AGE) product of serum proteins up to the extent of 70-90% within 12-24 h. Relatively moderate binding propensity along with the anti-glycation ability of the polyphenols confirmed that GTN and EGA can be used either as an alternative or towards development of suitable drugs in the prevention of many diabetic-related complications.
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Affiliation(s)
| | - Semen O Yesylevskyy
- Department of Physics of Biological Systems, Institute of Physics of the National Academy of Sciences of Ukraine, Prospect Nauky 46, 03028 Kyiv, Ukraine
| | - Sivaprasad Mitra
- Department of Chemistry, North-Eastern Hill University, Shillong 793 022, India.
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Ligand binding constants for human serum albumin evaluated by ratiometric analysis of DSC thermograms. Anal Biochem 2021; 628:114293. [PMID: 34181905 DOI: 10.1016/j.ab.2021.114293] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/24/2021] [Revised: 06/16/2021] [Accepted: 06/23/2021] [Indexed: 02/07/2023]
Abstract
This paper describes an expanded application of our recently reported method (Eskew et al., Analytical Biochemistry 621,1 2021) utilizing thermogram signals for thermal denaturation measured by differential scanning calorimetry. Characteristic signals were used to quantitatively evaluate ligand binding constants for human serum albumin. In our approach the ensemble of temperature dependent calorimetric responses for various protein-ligand mixtures and native HSA were compared, in a ratiometric manner, to extract binding constants and stoichiometries. Protein/ligand mixtures were prepared at various ligand concentrations and subjected to thermal denaturation analysis by calorimetry. Measurements provided the melting temperature, Tm, and free-energy ΔGcal(37°C) for melting ligand-bound Albumin as a function of ligand concentration. Concentration dependent behaviors of these parameters derived from protein/ligand mixtures were used to construct dose-response curves. Fitting of dose-response curves yielded quantitative evaluation of the ligand binding constant and semi-quantitative estimates of the binding stoichiometry. Many of the ligands had known binding affinity for Albumin with binding constants reported in the literature. Evaluated binding parameters for the ligands impressively agreed with reported literature values determined using other standard experimental methods. Results are reported for 29 drug ligands binding to Albumin. These validate our calorimetry-based process for applications in pre-clinical drug screening.
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Ovung A, Bhattacharyya J. Sulfonamide drugs: structure, antibacterial property, toxicity, and biophysical interactions. Biophys Rev 2021; 13:259-272. [PMID: 33936318 PMCID: PMC8046889 DOI: 10.1007/s12551-021-00795-9] [Citation(s) in RCA: 162] [Impact Index Per Article: 40.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/14/2020] [Accepted: 03/03/2021] [Indexed: 12/11/2022] Open
Abstract
Sulfonamide (or sulphonamide) functional group chemistry (SN) forms the basis of several groups of drug. In vivo sulfonamides exhibit a range of pharmacological activities, such as anti-carbonic anhydrase and anti-t dihydropteroate synthetase allowing them to play a role in treating a diverse range of disease states such as diuresis, hypoglycemia, thyroiditis, inflammation, and glaucoma. Sulfamethazine (SMZ) is a commonly used sulphonamide drug in veterinary medicine that acts as an antibacterial compound to treat livestock diseases such as gastrointestinal and respiratory tract infections. Sulfadiazine (SDZ) is another frequently employed sulphonamide drug that is used in combination with the anti-malarial drug pyrimethamine to treat toxoplasmosis in warm-blooded animals. This study explores the research findings and the work behaviours of SN (SMZ and SDZ) drugs. The areas covered include SN drug structure, SN drug antibacterial activity, SN drug toxicity, and SN environmental toxicity.
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Affiliation(s)
- Aben Ovung
- Department of Chemistry, National Institute of Technology Nagaland, Chumukedima, Dimapur, 797103 India
| | - Jhimli Bhattacharyya
- Department of Chemistry, National Institute of Technology Nagaland, Chumukedima, Dimapur, 797103 India
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Baruah P, Das A, Paul D, Chakrabarty S, Aguan K, Mitra S. Sulfonylurea Class of Antidiabetic Drugs Inhibit Acetylcholinesterase Activity: Unexplored Auxiliary Pharmacological Benefit toward Alzheimer's Disease. ACS Pharmacol Transl Sci 2021; 4:193-205. [PMID: 33615172 PMCID: PMC7887854 DOI: 10.1021/acsptsci.0c00168] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/13/2020] [Indexed: 12/21/2022]
Abstract
Contemporary literature documents extensive research on common causative mechanisms, pathogenic pathways and dual effective remedies for Alzheimer's disease (AD) and Type 2 diabetes mellitus (T2DM). Tolbutamide (TBM), chlorpropamide (CPM), and glyburide (GLY) are three sulfonylurea antidiabetic drugs of different generations. All these drugs were found to exhibit moderate to strong inhibitory efficiency on the neurotransmitter degrading enzyme acetylcholinesterase (AChE) with GLY (IC50 = 0.74 ± 0.02 μM) being the most potent, followed by CPM (IC50 = 5.72 ± 0.24 μM) and TBM (IC50 = 28.9 ± 1.60 μM). Notably, the inhibition efficiency of GLY is even comparable with the FDA approved AD drug, donepezil (DON). The larger size of GLY spans almost the full gorge of AChE ranging from catalytic active site (CAS) to the peripheral active site (PAS) with relatively strong binding affinity (6.0 × 105 M-1) and acts as a competitive inhibitor for AChE. On the other hand, while they show relatively weak binding ((2-6) × 104 M-1), both CPM and TBM act as noncompetitive binders. While these two drugs can bind to PAS, MD simulation results predict an alternative noncompetitive inhibition mechanism for CPM. These results open the possibility of repurposing the antidiabetic drugs, particularly GLY, in the treatment of AD. The consequential side effect of excess acetylcholine production, due to the administration of these drugs to AD-unaffected patients, can be rectified by using colloidal gold and silver nanofluids as potential AChE activity boosters.
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Affiliation(s)
- Prayasee Baruah
- Centre
for Advanced Studies in Chemistry and Department of Biotechnology &
Bioinformatics, North-Eastern Hill University, Shillong 793022, India
| | - Abhinandan Das
- Department
of Chemical, Biological & Macromolecular Sciences, S. N. Bose National Centre for Basic Sciences, Salt Lake City, Kolkata 700106, India
| | - Debojit Paul
- Department
of Chemistry, Indian Institute of Technology
Guwahati, Guwahati 781039, India
| | - Suman Chakrabarty
- Department
of Chemical, Biological & Macromolecular Sciences, S. N. Bose National Centre for Basic Sciences, Salt Lake City, Kolkata 700106, India
| | - Kripamoy Aguan
- Centre
for Advanced Studies in Chemistry and Department of Biotechnology &
Bioinformatics, North-Eastern Hill University, Shillong 793022, India
| | - Sivaprasad Mitra
- Centre
for Advanced Studies in Chemistry and Department of Biotechnology &
Bioinformatics, North-Eastern Hill University, Shillong 793022, India
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Rasteniene A, Gruskiene R, Sereikaite J. Interaction of ectoine and hydroxyectoine with protein: fluorescence study. CHEMICAL PAPERS 2021. [DOI: 10.1007/s11696-021-01527-9] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
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10
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El-Shaheny R, Yoshida S, Fuchigami T. Graphene quantum dots as a nanoprobe for analysis of o- and p-nitrophenols in environmental water adopting conventional fluorometry and smartphone image processing-assisted paper-based analytical device. In-depth study of sensing mechanisms. Microchem J 2020. [DOI: 10.1016/j.microc.2020.105241] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
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11
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Acar SelÇukİ N, CoŞkun E, BİÇer E. Combined computational and experimental studies on cysteine-sulfadiazine adduct formation. Turk J Chem 2020; 44:502-517. [PMID: 33488173 PMCID: PMC7671221 DOI: 10.3906/kim-1908-62] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/31/2019] [Accepted: 02/22/2020] [Indexed: 12/24/2022] Open
Abstract
The electrochemical characterization of sulfadiazine-cysteine (SD-CYS) adduct formation was performed in phosphate buffer (pH 7) on the basis of voltammetric current and peak potential measurements. Due to the association of cysteine with sulfadiazine, the reduction peak currents of mercuric and mercurous cysteine thiolates decreased and their peak potentials simultaneously shifted to less negative potentials. By using the current changes of mercurous cysteine thiolate, it was determined that cysteine and sulfadiazine are associated with a 1:1 stoichiometry with a conditional association constant of 1.99 ×104 M-1 . In addition to experimental studies, a computational approach was carried out to study the geometrical parameters, electron densities, and UV-Vis absorption spectra of sulfadiazine and SDCYS adduct in water. Calculated (B3LYP/6-311++G(d,p) level) and experimental UV-Vis absorption spectra of the compounds were found to be in good agreement in water. The computational study suggests that cysteine bound to the C(5) on the pyrimidine ring via SH-group nucleophilic attack. Computational results reveal that sulfadiazine and its derivatives effectively bind cysteine and may lead to new molecules/drugs to target cysteine.
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Affiliation(s)
- Nursel Acar SelÇukİ
- Department of Chemistry, Faculty of Science, Ege University, Bornova, İzmir Turkey
| | - Emine CoŞkun
- Department of Chemistry, Faculty of Arts and Science, Ondokuz Mayıs University, Atakum, Samsun Turkey
| | - Ender BİÇer
- Department of Chemistry, Faculty of Arts and Science, Ondokuz Mayıs University, Atakum, Samsun Turkey
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Rohman MA, Baruah P, Bhatta A, Mitra S. Deciphering the interactions of substituted chromones possessing acetylcholinesterase inhibition activity in human serum albumin matrix. J Mol Liq 2019. [DOI: 10.1016/j.molliq.2019.111210] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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13
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Wang W, Gan N, Sun Q, Wu D, Gan R, Zhang M, Tang P, Li H. Study on the interaction of ertugliflozin with human serum albumin in vitro by multispectroscopic methods, molecular docking, and molecular dynamics simulation. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2019; 219:83-90. [PMID: 31030051 DOI: 10.1016/j.saa.2019.04.047] [Citation(s) in RCA: 30] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/24/2019] [Revised: 04/15/2019] [Accepted: 04/17/2019] [Indexed: 06/09/2023]
Abstract
Ertugliflozin is a potent and selective inhibitor of sodium-dependent glucose cotransporters 2 (SGLT2) and used as a monotherapy to improve glycemic control in adult patients with type 2 diabetes. In this study, ertugliflozin binding to human serum albumin (HSA) was investigated by multispectroscopic and computer simulations. The fluorescence spectra demonstrated that the quenching mechanism of ertugliflozin and HSA was static quenching. Thermodynamic parameters indicated that hydrogen bonding and van der Waals forces played a key role in the binding. Fluorescence competition experiments and molecular docking revealed that ertugliflozin bound to HSA sites II. In three-dimensional fluorescence, circular dichroism spectroscopy, and molecular dynamics simulation, ertugliflozin did not affect the basic skeleton structure of HSA but slightly increased the α-helical structure content and changed the microenvironment around amino acid residues. Results provide valuable information on the basis of the interaction of ertugliflozin with HSA.
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Affiliation(s)
- Wenjing Wang
- School of Chemical Engineering, Sichuan University, Chengdu 610065, China
| | - Na Gan
- School of Chemical Engineering, Sichuan University, Chengdu 610065, China
| | - Qiaomei Sun
- School of Chemical Engineering, Sichuan University, Chengdu 610065, China
| | - Di Wu
- Key Laboratory of Meat Processing of Sichuan, College of Pharmacy and Biological Engineering, Chengdu University, Chengdu 610106, China.
| | - Ruixue Gan
- School of Chemical Engineering, Sichuan University, Chengdu 610065, China
| | - Man Zhang
- School of Chemical Engineering, Sichuan University, Chengdu 610065, China
| | - Peixiao Tang
- School of Chemical Engineering, Sichuan University, Chengdu 610065, China
| | - Hui Li
- School of Chemical Engineering, Sichuan University, Chengdu 610065, China.
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14
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Ravelli D, Isernia P, Acquarulo A, Profumo A, Merli D. Voltammetric Determination of Binding Constant and Stoichiometry of Albumin (Human, Bovine, Ovine)–Drug Complexes. Anal Chem 2019; 91:10110-10115. [DOI: 10.1021/acs.analchem.9b02088] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/25/2023]
Affiliation(s)
- Davide Ravelli
- Università degli Studi di Pavia, Dipartimento di Chimica, Viale Taramelli 12, 27100 Pavia, Italia
| | - Paola Isernia
- Fondazione IRCCS Policlinico San Matteo, Servizio di Immunoematologia e Medicina Trasfusionale, Centro Lavorazione e Validazione Emocomponenti (CLV), Viale Camillo Golgi 19, 27100 Pavia, Italia
| | - Andrea Acquarulo
- Università degli Studi di Pavia, Dipartimento di Chimica, Viale Taramelli 12, 27100 Pavia, Italia
| | - Antonella Profumo
- Università degli Studi di Pavia, Dipartimento di Chimica, Viale Taramelli 12, 27100 Pavia, Italia
| | - Daniele Merli
- Università degli Studi di Pavia, Dipartimento di Chimica, Viale Taramelli 12, 27100 Pavia, Italia
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15
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Baruah P, Rohman MA, Yesylevskyy SO, Mitra S. Therapeutic potency of substituted chromones as Alzheimer's drug: Elucidation of acetylcholinesterase inhibitory activity through spectroscopic and molecular modelling investigation. BIOIMPACTS : BI 2019; 9:79-88. [PMID: 31334039 PMCID: PMC6637216 DOI: 10.15171/bi.2019.11] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 08/21/2018] [Revised: 11/13/2018] [Accepted: 11/17/2018] [Indexed: 11/09/2022]
Abstract
Introduction: Documentation on the potency of chromones as acetylcholinesterase (AChE) antagonists has paved the way for the design and usage of new chromone analogues as inhibitors of AChE modelled on the hypothesis based on cholinergic pathway of Alzheimer's disease (AD). Here, 2 minimally substituted chromones, namely 3-cyanochromone (CyC) and 7-amino-3- methylchromone (AMC), were checked for their AChE inhibition efficacies and plasma protein modulation. Methods: Colorimetric enzymatic assay as well as fluorescence measurements were performed for obtaining the experimental results, which were further corroborated by molecular docking and simulation studies. Results: The investigated systems exhibited strong inhibition activities against AChE, with CyC (IC50= 85.12 ± 6.70 nM) acting as better inhibitor than AMC (IC50 = 103.09 ± 11.90 nM) and both having IC50 values in the range of FDA approved cholinergic drug Donepezil (IC50 = 74.13 ± 8.30 nM). Non-competitive inhibition was observed in both the cases with the inhibitors binding near the peripheral anionic site (PAS) of the enzyme. Having one planar nitrile group in CyC as compared to sp3 hybridised substituents in AMC facilitated stacking interactions in the former, accounting for its higher inhibitory efficacy. A significant decrease in the inhibition potency of CyC (~32%) was noted in comparison with AMC (~5%) when the experiments were performed in presence of human serum albumin (HSA) instead of pure aqueous buffer. Conclusion: This comparative study affirms the importance of meticulous substitution in the chromone scaffold to promote maximum inhibition potency, while considering their usage as AD drugs.
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Affiliation(s)
- Prayasee Baruah
- Centre for Advanced Studies in Chemistry, North-Eastern Hill University, Shillong – 793 022, India
| | - Mostofa Ataur Rohman
- Centre for Advanced Studies in Chemistry, North-Eastern Hill University, Shillong – 793 022, India
| | - Semen O. Yesylevskyy
- Department of Physics of Biological Systems, Institute of Physics of the National Academy of Sciences of Ukraine, Prospect Nauky 46, 03028 Kyiv, Ukraine
| | - Sivaprasad Mitra
- Centre for Advanced Studies in Chemistry, North-Eastern Hill University, Shillong – 793 022, India
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16
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Gharat PM, Pal H, Dutta Choudhury S. Photophysics and luminescence quenching of carbon dots derived from lemon juice and glycerol. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2019; 209:14-21. [PMID: 30343105 DOI: 10.1016/j.saa.2018.10.029] [Citation(s) in RCA: 26] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/21/2018] [Revised: 10/08/2018] [Accepted: 10/14/2018] [Indexed: 06/08/2023]
Abstract
During the past decade, carbon dots have emerged as a fascinating class of luminescent nanomaterials with versatile application potentials in bioimaging, labeling, photocatalysis and optoelectronics. Currently, intensive research is concentrated on understanding the intriguing optical properties of these promising materials and their utility as luminescence sensors. In this article, we describe the photoluminescence of carbon dots obtained from a bioresource (lemon juice) and from a small molecule precursor (glycerol), especially the quenching of their emission by nitrobenzene and Hg2+ ions, as representative cases. Stern-Volmer analysis using steady-state and time-resolved emission measurements, suggests the involvement of both transient quenching and dynamic quenching mechanisms in the interaction of the carbon dots with nitrobenzene. The radius of the quenching sphere is estimated to be slightly greater than the contact distances between the respective carbon dots and nitrobenzene, which is in reasonable agreement with the "sphere of action" model for transient quenching. In the interaction with Hg2+ ions, electrostatic attraction plays a major role, and the quenching mechanism involves predominantly static and dynamic quenching. The static quenching constant matches well with the binding constant of the carbon dots with the metal ion.
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Affiliation(s)
- Poojan Milan Gharat
- Radiation & Photochemistry Division, Bhabha Atomic Research Centre, Mumbai 400085, India
| | - Haridas Pal
- Radiation & Photochemistry Division, Bhabha Atomic Research Centre, Mumbai 400085, India; Homi Bhabha National Institute, Training School Complex, Anushaktinagar, Mumbai 400094, India
| | - Sharmistha Dutta Choudhury
- Radiation & Photochemistry Division, Bhabha Atomic Research Centre, Mumbai 400085, India; Homi Bhabha National Institute, Training School Complex, Anushaktinagar, Mumbai 400094, India.
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17
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Makarska-Bialokoz M, Lipke A. Study of the binding interactions between uric acid and bovine serum albumin using multiple spectroscopic techniques. J Mol Liq 2019. [DOI: 10.1016/j.molliq.2018.12.026] [Citation(s) in RCA: 34] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
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18
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Rohman MA, Saha K, Mitra S. Fluorescence modulation of excited state intramolecular proton transfer (ESIPT) probe 3-formyl-4-hydroxy benzoic acid encapsulated in the protein binding domain of serum albumins: a combined spectroscopic and molecular docking study. J Biomol Struct Dyn 2019; 37:4737-4746. [DOI: 10.1080/07391102.2018.1559764] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Affiliation(s)
- Mostofa Ataur Rohman
- Department of Chemistry, Centre for Advanced Studies, North-Eastern Hill University, Shillong, India
| | - Kundan Saha
- Department of Chemistry, Indian Institute of Technology Guwahati, Guwahati, India
| | - Sivaprasad Mitra
- Department of Chemistry, Centre for Advanced Studies, North-Eastern Hill University, Shillong, India
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19
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Sonu VK, Mitra S. Quenching of Luminol Fluorescence at Nano-Bio Interface: Towards the Development of an Efficient Energy Transfer System. J Fluoresc 2018; 29:165-176. [PMID: 30519975 DOI: 10.1007/s10895-018-2324-2] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/10/2018] [Accepted: 11/05/2018] [Indexed: 10/27/2022]
Abstract
Surface modified colloidal gold (Au) and silver (Ag) nanoparticles (NPs) were used as efficient quenchers of luminol (LH2) fluorescence either in homogeneous aqueous medium or its noncovalent assembly with bovine serum albumin (BSA). The mechanism as well as the extent of fluorescence quenching was found to be strongly dependent on the nature of the nanoparticles. While simple static type fluorescence quenching mechanism was perceived with AuNP, a more complex protocol involving quenching sphere model was envisaged for AgNP quenching. Nevertheless, the magnitude of Stern-Volmer (SV) quenching constant (KSV ~ 108-1010 M-1) was calculated to be ca. 104 times more for surface quoted NPs in comparison with BSA-NP bioconjugates system. On the other hand, a highly efficient (E ≈ 95%) energy transfer (ET) process was predicted for LH2 captured in the hydrophobic assembly with BSA in presence of AgNP as an acceptor. The ET efficiency is critically dependent on the concentration of BSA and nicely correlated with the extent of NP surface coverage. However, fluorescence quenching on AuNP surface is relatively less responsive towards protein concentration, primarily due to the difference in surface activity as well as the mode of interaction of the protein with NPs. Graphical Abstract Energy transfer from excited luminol to metal nanoparticles is strongly modulated in presence of serum albumins.
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Affiliation(s)
- Vikash Kumar Sonu
- Centre for Advanced Studies, Department of Chemistry, North-Eastern Hill University, Shillong, 793022, India
| | - Sivaprasad Mitra
- Centre for Advanced Studies, Department of Chemistry, North-Eastern Hill University, Shillong, 793022, India.
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20
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Zhu M, Wang L, Zhang H, Fan S, Wang Z, Li QX, Wang Y, Liu S. Interactions between tetrahydroisoindoline-1,3-dione derivatives and human serum albumin via multiple spectroscopy techniques. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2018; 25:17735-17748. [PMID: 29671232 DOI: 10.1007/s11356-018-1955-9] [Citation(s) in RCA: 31] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/17/2017] [Accepted: 04/04/2018] [Indexed: 06/08/2023]
Abstract
Some tetrahydroisoindoline-1,3-dione derivatives (TDDs) possess potent herbicidal activity. To assess possible impacts of TDDs on humans, the interactions between TDDs and human serum albumin (HSA) were evaluated with steady-state and time-resolved fluorescence spectroscopy, synchronous fluorescence spectroscopy, Fourier transform-infrared spectroscopy, and circular dichroism spectroscopy. The thermodynamic data obtained at temperatures of 298, 307, and 316 K indicate that TDDs spontaneously bind to HSA and thus form a TDD-HSA complex. The conformation and secondary structure of HSA are changed, and the intrinsic fluorescence of HSA is statically quenched by TDDs. Moreover, the TDD-HSA complex is formed primarily through electrostatic interactions and has only one binding site on HSA. A competitive ligand-binding assay revealed that site II (subdomain IIIA) displays the greatest affinity for TDDs. In addition, an acute toxicity bioassay showed no zebrafish mortality upon exposure to 4000 μg L-1 of TDDs. This work is helpful for understanding interactions between TDDs and HSA.
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Affiliation(s)
- Meiqing Zhu
- Key Laboratory of Agri-food Safety of Anhui Province, College of Resources and Environment, Anhui Agricultural University, No. 130 Changjiang West Road, Hefei, 230036, China
| | - Lijun Wang
- Key Laboratory of Agri-food Safety of Anhui Province, College of Resources and Environment, Anhui Agricultural University, No. 130 Changjiang West Road, Hefei, 230036, China
| | - Hao Zhang
- Department of Applied Chemistry, College of Science, China Agricultural University, No. 2 Yuanmingyuan West Road, Beijing, 100193, China
| | - Shisuo Fan
- Key Laboratory of Agri-food Safety of Anhui Province, College of Resources and Environment, Anhui Agricultural University, No. 130 Changjiang West Road, Hefei, 230036, China
| | - Zhen Wang
- Key Laboratory of Agri-food Safety of Anhui Province, College of Resources and Environment, Anhui Agricultural University, No. 130 Changjiang West Road, Hefei, 230036, China
| | - Qing X Li
- Department of Molecular Biosciences and Bioengineering, University of Hawaii at Manoa, Honolulu, HI, 96822, USA
| | - Yi Wang
- Key Laboratory of Agri-food Safety of Anhui Province, College of Resources and Environment, Anhui Agricultural University, No. 130 Changjiang West Road, Hefei, 230036, China.
- Department of Applied Chemistry, College of Science, China Agricultural University, No. 2 Yuanmingyuan West Road, Beijing, 100193, China.
| | - Shangzhong Liu
- Department of Applied Chemistry, College of Science, China Agricultural University, No. 2 Yuanmingyuan West Road, Beijing, 100193, China.
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21
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Baruah P, Basumatary G, Yesylevskyy SO, Aguan K, Bez G, Mitra S. Novel coumarin derivatives as potent acetylcholinesterase inhibitors: insight into efficacy, mode and site of inhibition. J Biomol Struct Dyn 2018; 37:1750-1765. [DOI: 10.1080/07391102.2018.1465853] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/08/2023]
Affiliation(s)
- Prayasee Baruah
- Centre for Advanced Studies in Chemistry and Department of Biotechnology & Bioinformatics, North-Eastern Hill University , Shillong, India
| | - Grace Basumatary
- Centre for Advanced Studies in Chemistry and Department of Biotechnology & Bioinformatics, North-Eastern Hill University , Shillong, India
| | - Semen O. Yesylevskyy
- Department of Physics of Biological Systems, Institute of Physics of the National Academy of Sciences of Ukraine , Kyiv, Ukraine
| | - Kripamoy Aguan
- Department of Physics of Biological Systems, Institute of Physics of the National Academy of Sciences of Ukraine , Kyiv, Ukraine
| | - Ghanashyam Bez
- Centre for Advanced Studies in Chemistry and Department of Biotechnology & Bioinformatics, North-Eastern Hill University , Shillong, India
| | - Sivaprasad Mitra
- Centre for Advanced Studies in Chemistry and Department of Biotechnology & Bioinformatics, North-Eastern Hill University , Shillong, India
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22
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Makarska-Bialokoz M. Interactions of hemin with bovine serum albumin and human hemoglobin: A fluorescence quenching study. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2018; 193:23-32. [PMID: 29212045 DOI: 10.1016/j.saa.2017.11.063] [Citation(s) in RCA: 125] [Impact Index Per Article: 17.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/18/2017] [Revised: 11/26/2017] [Accepted: 11/29/2017] [Indexed: 05/28/2023]
Abstract
The binding interactions between hemin (Hmi) and bovine serum albumin (BSA) or human hemoglobin (HHb), respectively, have been examined in aqueous solution at pH=7.4, applying UV-vis absorption, as well as steady-state, synchronous and three-dimensional fluorescence spectra techniques. Representative results received for both BSA and HHb intrinsic fluorescence proceeding from the interactions with hemin suggest the formation of stacking non-covalent and non-fluorescent complexes in both the Hmi-BSA and Hmi-HHb systems, with highly possible concurrent formation of a coordinate bond between a group on the protein surface and the metal in Hmi molecule. All the values of calculated parameters, the binding, fluorescence quenching and bimolecular quenching rate constants point to the involvement of static quenching in both the systems studied. The blue shift in the synchronous fluorescence spectra imply the participation of both tryptophan and tyrosine residues in quenching of BSA and HHb intrinsic fluorescence. Depicted outcomes suggest that hemin is supposedly able to influence the physiological functions of BSA and HHb, the most important blood proteins, particularly in case of its overuse.
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Affiliation(s)
- Magdalena Makarska-Bialokoz
- Department of Inorganic Chemistry, Maria Curie-Sklodowska University, M. C. Sklodowska Sq. 2, 20-031 Lublin, Poland.
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23
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Essner JB, Chen X, Wood TD, Baker GA. Tandem copper and gold nanoclusters for two-color ratiometric explosives detection. Analyst 2018; 143:1036-1041. [PMID: 29423479 PMCID: PMC5831381 DOI: 10.1039/c7an01867c] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
We report a sensory platform for the determination of common explosive species (e.g., TNT, PETN, RDX) based on the differential response from two different luminescent metal nanoclusters. In particular, whereas the red emission from bovine serum albumin-protected gold nanoclusters was strongly quenched by nitro-, nitrate-, and nitroamine-containing explosive organic molecules, blue-emitting glutathione-capped copper nanoclusters proved inert to quenching by these same analytes, instead showing evidence for aggregation-induced emission enhancement (AIEE). As a result, this discrete gold/copper nanocluster pairing provides a dual-probe, ratiometric (red-to-blue) system signaling the presence of TNT and other common explosives. This strategy opens up new potential for nanocluster-based analyte signaling, with implications to fluorescence resonance energy transfer (FRET) strategies as well.
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Affiliation(s)
- Jeremy B Essner
- Department of Chemistry, University of Missouri, Columbia, MO 65211, USA.
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24
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Sonu VK, Rajkumar I, Bhattacharjee K, Joshi S, Mitra S. Interaction of caffeine and sulfadiazine with lysozyme adsorbed at colloidal metal nanoparticle interface: influence on drug transport ability and antibacterial activity. J Biomol Struct Dyn 2018; 37:321-335. [DOI: 10.1080/07391102.2018.1426497] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Affiliation(s)
- Vikash K. Sonu
- Centre for Advanced Studies in Chemistry North-Eastern Hill University, Shillong, 793 022, India
| | - Imocha Rajkumar
- Centre for Advanced Studies in Chemistry North-Eastern Hill University, Shillong, 793 022, India
| | - Kaushik Bhattacharjee
- Department of Biotechnology & Bioinformatics, North-Eastern Hill University, Shillong, 793 022, India
| | - S.R. Joshi
- Department of Biotechnology & Bioinformatics, North-Eastern Hill University, Shillong, 793 022, India
| | - Sivaprasad Mitra
- Centre for Advanced Studies in Chemistry North-Eastern Hill University, Shillong, 793 022, India
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25
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Makarska-Bialokoz M. Investigation of the binding affinity in vitamin B12-Bovine serum albumin system using various spectroscopic methods. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2017; 184:262-269. [PMID: 28528252 DOI: 10.1016/j.saa.2017.05.014] [Citation(s) in RCA: 39] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/17/2017] [Revised: 05/06/2017] [Accepted: 05/08/2017] [Indexed: 05/28/2023]
Abstract
The binding affinity between vitamin B12 (VitB12) and bovine serum albumin (BSA) has been investigated in aqueous solution at pH=7.4, employing UV-vis absorption and steady-state, synchronous and three-dimensional fluorescence spectra techniques. Representative effects noted for BSA intrinsic fluorescence resulting from the interactions with VitB12 confirm the formation of π-π stacked non-covalent and non-fluorescent complexes in the system VitB12-BSA. All the determined parameters, the binding, fluorescence quenching and bimolecular quenching rate constants (of the order of 104Lmol-1, 103Lmol-1 and 1011Lmol-1s-1, respectively), as well as Förster resonance energy transfer parameters validate the mechanism of static quenching. The interaction with VitB12 induces folding of the polypeptide chains around Trp residues of BSA, resulting in a more hydrophobic surrounding. Presented outcomes suggest that the addition of VitB12 can lead to the more organized BSA conformation and its more folded tertiary structure, what could influence the physiological functions of bovine serum albumin, notably in case of its overuse or abnormal metabolism.
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Affiliation(s)
- Magdalena Makarska-Bialokoz
- Department of Inorganic Chemistry, Maria Curie-Sklodowska University, M. C. Sklodowska Sq. 2, 20-031 Lublin, Poland.
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26
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Interactions between epinastine and human serum albumin: Investigation by fluorescence, UV–vis, FT–IR, CD, lifetime measurement and molecular docking. J Mol Struct 2017. [DOI: 10.1016/j.molstruc.2016.12.066] [Citation(s) in RCA: 41] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
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27
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Domain-specific interactions between MLN8237 and human serum albumin estimated by STD and WaterLOGSY NMR, ITC, spectroscopic, and docking techniques. Sci Rep 2017; 7:45514. [PMID: 28358124 PMCID: PMC5371984 DOI: 10.1038/srep45514] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/28/2016] [Accepted: 02/27/2017] [Indexed: 12/26/2022] Open
Abstract
Alisertib (MLN8237) is an orally administered inhibitor of Aurora A kinase. This small-molecule inhibitor is under clinical or pre-clinical phase for the treatment of advanced malignancies. The present study provides a detailed characterization of the interaction of MLN8237 with a drug transport protein called human serum albumin (HSA). STD and WaterLOGSY nuclear magnetic resonance (NMR)-binding studies were conducted first to confirm the binding of MLN8237 to HSA. In the ligand orientation assay, the binding sites of MLN8237 were validated through two site-specific spy molecules (warfarin sodium and ibuprofen, which are two known site-selective probes) by using STD and WaterLOGSY NMR competition techniques. These competition experiments demonstrate that both spy molecules do not compete with MLN8237 for the specific binding site. The AutoDock-based blind docking study recognizes the hydrophobic subdomain IB of the protein as the probable binding site for MLN8237. Thermodynamic investigations by isothermal titration calorimetry (ITC) reveal that the non-covalent interaction between MLN8237 and HSA (binding constant was approximately 105 M−1) is driven mainly by favorable entropy and unfavorable enthalpy. In addition, synchronous fluorescence, circular dichroism (CD), and 3D fluorescence spectroscopy suggest that MLN8237 may induce conformational changes in HSA.
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28
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Protein-ligand binding affinity determination by the waterLOGSY method: An optimised approach considering ligand rebinding. Sci Rep 2017; 7:43727. [PMID: 28256624 PMCID: PMC5335602 DOI: 10.1038/srep43727] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/19/2016] [Accepted: 01/27/2017] [Indexed: 12/21/2022] Open
Abstract
WaterLOGSY is a popular ligand-observed NMR technique to screen for protein-ligand interactions, yet when applied to measure dissociation constants (KD) through ligand titration, the results were found to be strongly dependent on sample conditions. Herein, we show that accurate KDs can be obtained by waterLOGSY with optimised experimental setup.
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29
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Duru Kamaci U, Kamaci M, Peksel A. Thermally Stable Schiff Base and its Metal Complexes: Molecular Docking and Protein Binding Studies. J Fluoresc 2017; 27:805-817. [DOI: 10.1007/s10895-016-2016-8] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/31/2016] [Accepted: 12/29/2016] [Indexed: 01/30/2023]
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30
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Sayed M, Jha S, Pal H. Complexation induced aggregation and deaggregation of acridine orange with sulfobutylether-β-cyclodextrin. Phys Chem Chem Phys 2017; 19:24166-24178. [DOI: 10.1039/c7cp03135a] [Citation(s) in RCA: 25] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
Abstract
The present study illustrates intriguing switching of multi-mode binding interactions of acridine orange dye with a sulfobutylether-β-cyclodextrin host.
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Affiliation(s)
- Mhejabeen Sayed
- Radiation & Photochemistry Division
- Bhabha Atomic Research Centre
- Mumbai 400 085
- India
| | - Shruti Jha
- Radiation & Photochemistry Division
- Bhabha Atomic Research Centre
- Mumbai 400 085
- India
| | - Haridas Pal
- Radiation & Photochemistry Division
- Bhabha Atomic Research Centre
- Mumbai 400 085
- India
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31
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Sonu VK, Islam MM, Rohman MA, Mitra S. Lysozyme binding ability toward psychoactive stimulant drugs: Modulatory effect of colloidal metal nanoparticles. Colloids Surf B Biointerfaces 2016; 146:514-22. [DOI: 10.1016/j.colsurfb.2016.06.061] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/08/2016] [Revised: 05/27/2016] [Accepted: 06/28/2016] [Indexed: 11/26/2022]
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32
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33
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Sayed M, Krishnamurthy B, Pal H. Unraveling multiple binding modes of acridine orange to DNA using a multispectroscopic approach. Phys Chem Chem Phys 2016; 18:24642-53. [PMID: 27545984 DOI: 10.1039/c6cp03716j] [Citation(s) in RCA: 34] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The interaction of acridine orange (AOH(+)) with calf thymus DNA (ct-DNA) under different dye-DNA conditions has been investigated in detail using multispectroscopic techniques, unraveling a number of hitherto unexplored intricacies of dye-DNA binding. The observed results intriguingly show contrasting binding features when low (2.4 μM) and significantly high (23 μM) dye concentrations are used. It is conclusively inferred from absorption, steady-state fluorescence, circular dichroism, fluorescence decay and anisotropy decay studies that at low [DNA] to [dye] ratio, especially with higher dye concentration, dimeric AOH(+) predominantly binds externally to DNA surfaces through electrostatic interactions. At sufficiently high [DNA] to [dye] ratios, however, the interaction intriguingly changes to monomeric AOH(+) bound to DNA, predominantly in the intercalative mode between DNA base pairs, with partly an electrostatic binding on DNA surfaces. With very low initial dye concentration, monomeric (AOH(+)) mostly binds to DNA through intercalative and electrostatic modes for most DNA to dye ratios. The present study demonstrates a systematic correlation of the striking changes in the photophysical properties of the dye upon multimode binding with DNA. The observed results are of great significance in understanding the fundamental insights of dye/drug binding to DNA hosts, of use in the design of effective therapeutic agents.
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Affiliation(s)
- Mhejabeen Sayed
- Radiation & Photochemistry Division, Bhabha Atomic Research Centre, Trombay, Mumbai 400 085, India.
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34
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Zhang S, Chen X, Ding S, Lei Q, Fang W. Unfolding of human serum albumin by gemini and single-chain surfactants: A comparative study. Colloids Surf A Physicochem Eng Asp 2016. [DOI: 10.1016/j.colsurfa.2016.01.051] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
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