Effects of nitrogen deposition on soil microbial communities in temperate and subtropical forests in China

Soil fungal community has higher network stability than bacterial community in response to warming and nitrogen addition in a subtropical primary forest

Global change factors are known to strongly affect soil microbial community function and composition. However, as of yet, the effects of warming and increased anthropogenic nitrogen deposition on soil microbial network complexity and stability are still unclear. Here, we examined the effects of experimental warming (3°C above ambient soil temperature) and nitrogen addition (5 g N m-2 year-1) on the complexity and stability of the soil microbial network in a subtropical primary forest. Compared to the control, warming increased |negative cohesion|:positive cohesion by 7% and decreased network vulnerability by 5%; nitrogen addition decreased |negative cohesion|:positive cohesion by 10% and increased network vulnerability by 11%. Warming and decreased soil moisture acted as strong filtering factors that led to higher bacterial network stability. Nitrogen addition reduced bacterial network stability by inhibiting soil respiration and increasing resource availability. Neither warming nor nitrogen addition changed fungal network complexity and stability. These findings suggest that the fungal community is more tolerant than the bacterial community to climate warming and nitrogen addition. The link between bacterial network stability and microbial community functional potential was significantly impacted by nitrogen addition and warming, while the response of soil microbial network stability to climate warming and nitrogen deposition may be independent of its complexity. Our findings demonstrate that changes in microbial network structure are crucial to ecosystem management and to predict the ecological consequences of global change in the future.

IMPORTANCE

Soil microbes play a very important role in maintaining the function and health of forest ecosystems. Unfortunately, global change factors are profoundly affecting soil microbial structure and function. In this study, we found that climate warming promoted bacterial network stability and nitrogen deposition decreased bacterial network stability. Changes in bacterial network stability had strong effects on bacterial community functional potentials linked to metabolism, nitrogen cycling, and carbon cycling, which would change the biogeochemical cycle in primary forests.

Nitrogen addition changed soil fungal community structure and increased the biomass of functional fungi in Korean pine plantations in temperate northeast China

Nitrogen (N) deposition is a global environmental issue that can have significant impacts on the community structure and function in ecosystems. Fungi play a key role in soil biogeochemical cycles and their community structures are tightly linked to the health and productivity of forest ecosystems. Based on high-throughput sequencing and ergosterol extraction, we examined the changes in community structure, composition, and biomass of soil ectomycorrhizal (ECM) and saprophytic (SAP) fungi in 0-10 cm soil layer after 8 years of continuous N addition and their driving factors in a temperate Korean pine plantation in northeast China. Our results showed that N addition increased fungal community richness, with the highest richness and Chao1 index under the low N treatment (LN: 20 kg N ha-1 yr-1). Based on the FUN Guild database, we found that the relative abundance of ECM and SAP fungi increased first and then decreased with increasing N deposition concentration. The molecular ecological network analysis showed that the interaction between ECM and SAP fungi was enhanced by N addition, and the interaction was mainly positive in the ECM fungal network. N addition increased fungal biomass, and the total fungal biomass (TFB) was the highest under the MN treatment (6.05 ± 0.3 mg g-1). Overall, we concluded that N addition changed soil biochemical parameters, increased fungal activity, and enhanced functional fungal interactions in the Korean pine plantation over an 8-year simulated N addition. We need to consider the effects of complex soil conditions on soil fungi and emphasize the importance of regulating soil fungal community structure and biomass for managing forest ecosystems. These findings could deepen our understanding of the effects of increased N deposition on soil fungi in temperate forests in northern China, which can provide the theoretical basis for reducing the effects of increased N deposition on forest soil.

Interruption after Short-Term Nitrogen Additions Improves Ecological Stability of Larix olgensis Forest Soil by Affecting Bacterial Communities

Atmospheric nitrogen deposition can alter soil microbial communities and further impact the structure and function of forest ecosystems. However, most studies are focused on positive or negative effects after nitrogen addition, and few studies pay attention to its interruption. In order to investigate whether interruption after different levels of short-term N additions still benefit soil health, we conducted a 2-year interruption after a 4-year short-term nitrogen addition (10 and 20 kg N·hm-2·yr-1) experiment; then, we compared soil microbial diversity and structure and analyzed soil physicochemical properties and their correlations before and after the interruption in Larix olgensis forest soil in northeast China. The results showed that soil ecological stabilization of Larix olgensis forest further improved after the interruption compared to pre-interruption. The TN, C:P, N:P, and C:N:P ratios increased significantly regardless of the previous nitrogen addition concentration, and soil nutrient cycling was further promoted. The relative abundance of the original beneficial microbial taxa Gemmatimonas, Sphingomonas, and Pseudolabrys increased; new beneficial bacteria Ellin6067, Massilia, Solirubrobacter, and Bradyrhizobium appeared, and the species of beneficial soil microorganisms were further improved. The results of this study elucidated the dynamics of the bacterial community before and after the interruption of short-term nitrogen addition and could provide data support and a reference basis for forest ecosystem restoration strategies and management under the background of global nitrogen deposition.

Role of genes encoding microbial carbohydrate-active enzymes in the accumulation and dynamics of organic carbon in subtropical forest soils

Microbial anabolism and catabolism regulate the accumulation and dynamics of soil organic carbon (SOC). However, very little attention has been paid to the role of microbial functional traits in the accumulation and dynamics of SOC in forest soils. In this study, nine forest soils were selected at three altitudes (600 m, 1200 m, and 1500 m) and three soil depths (0-15 cm, 15-30 cm, and 30-45 cm) located in Jiugong Mountain. Vertical traits of functional genes encoding microbial carbohydrate-active enzymes (CAZymes) were observed using metagenomic sequencing. Soil amino sugars were used as biomarkers to indicate microbial residue carbon (MRC). The results showed that GH1 (β-glucosidase: 147.49 TPM) and GH3 (β-glucosidase: 109.09 TPM) were the dominant genes for plant residue decomposition, and their abundance increased with soil depth and peaked in the deep soil at 600 m (GH1: 147.89 TPM; GH3: 109.59 TPM). The highest abundance of CAZymes for fungal and bacterial residue decomposition were GH18 (chitinase: 30.81 TPM) and GH23 (lysozyme: 58.02 TPM), respectively. The abundance of GH18 increased with soil depth, while GH23 showed the opposite trend. Moreover, MRC accumulation was significantly positively correlated with CAZymes involved in the degradation of hemicellulose (r = 0.577, p = 0.002). Compared with the soil before incubation, MRC in the topsoil at the low and middle altitudes after incubation increased by 4 % and 8 %, respectively, while MRC in the soils at 1500 m tended to decrease (p > 0.05). The mineralization capacity of SOC at 1500 m was significantly higher than that at 1200 m and 600 m (p < 0.05). Our results suggested that microbial function for degrading plant residue components, especially hemicellulose and lignin, contributed greatly to SOC accumulation and dynamics. These results were vital for understanding the roles of microbial functional traits in C cycling in forest.

Depth-dependent responses of soil organic carbon under nitrogen deposition

Emerging evidence points out that the responses of soil organic carbon (SOC) to nitrogen (N) addition differ along the soil profile, highlighting the importance of synthesizing results from different soil layers. Here, using a global meta-analysis, we found that N addition significantly enhanced topsoil (0-30 cm) SOC by 3.7% (±1.4%) in forests and grasslands. In contrast, SOC in the subsoil (30-100 cm) initially increased with N addition but decreased over time. The model selection analysis revealed that experimental duration and vegetation type are among the most important predictors across a wide range of climatic, environmental, and edaphic variables. The contrasting responses of SOC to N addition indicate the importance of considering deep soil layers, particularly for long-term continuous N deposition. Finally, the lack of depth-dependent SOC responses to N addition in experimental and modeling frameworks has likely resulted in the overestimation of changes in SOC storage under enhanced N deposition.

Nitrogen deposition raises temperature sensitivity of soil organic matter decomposition in subtropical forest

Subtropical ecosystems are strongly affected by nitrogen (N) deposition, impacting soil organic matter (SOM) availability and stocks. Here we aimed to reveal the effects of N deposition on i) the structure and functioning of microbial communities and ii) the temperature sensitivity (Q10) of SOM decomposition. Phosphorus (P) limited evergreen forest in Guangdong Province, southeastern China, was selected, and N deposition (factor level: N (100 kg N ha-1 y-1 (NH4NO3)) and control (water), arranged into randomized complete block design (n = 3)) was performed during 2.5 y. After that soils from 0 to 20 cm were collected, analyzed for the set of parameters and incubated at 15, and 25, and 35 °C for 112 days. N deposition increased the microbial biomass N and the content of fungal and Gram-positive bacterial biomarkers; activities of beta-glucosidase (BG) and acid phosphatase (ACP) also increased showing the intensification of SOM decomposition. The Q10 of SOM decomposition under N deposition was 1.66 and increased by 1.4 times than under control. Xylosidase (BX), BG, and ACP activities increased with temperature under N but decreased with the incubation duration, indicating either low production and/or decomposition of enzymes. Activities of polyphenol-(PPO) and peroxidases (POD) were higher under N than in the control soil and were constant during the incubation showing the intensification of recalcitrant SOM decomposition. At the early incubation stage (10 days), the increase of Q10 of CO2 efflux was explained by the activities of BX, BQ, ACP, and POD and the quality of the available dissolved organic matter pool. At the later incubation stages (112 days), the drop of Q10 of CO2 efflux was due to the depletion of the labile organic substances and the shift of microbial community structure to K-strategists. Thus, N deposition decoupled the effects of extracellular enzyme activities from microbial community structure on Q10 of SOM decomposition in the subtropical forest soil.

Effects of vegetation succession on soil microbial stoichiometry in Phyllstachys edulis stands following abandonment

Moso bamboo (Phyllostachys edulis) is China's most important economic bamboo species. With a continuous decline in the value of its shoots and timber and an increase in affiliated labor and production costs, many of these stands have been abandoned, resulting in the occurrence of vegetation succession. Currently, our understanding on changes in soil microbial stoichiometric and entropic effects and associated imbalances following stand abandonment is limited. Accordingly, this study explores three timescales of Ph. edulis stand abandonment (i.e., 0, 9, and 21 years) to investigate soil-microbial carbon (C), nitrogen (N), and phosphorus (P) dynamics within a 30 cm soil profile. Results showed that (1) following abandonment, vegetation succession significantly influenced soil carbon (Csoil), nitrogen (Nsoil), and phosphorus (Psoil), microbial biomass (Cmic), nitrogen (Nmic), and phosphorus (Pmic), and Csoil:Nsoil:Psoil and Cmic:Nmic:Pmic ratios. Additionally, Csoil, Nsoil, Psoil, Cmic, Nmic, Pmic all increased significantly over time following abandonment. Moreover, Csoil:Nsoil, Cmic:Pmic, and Nmic:Pmic ratios clearly increased while Csoil:Psoil, Nsoil:Psoil, and Cmic:Nmic ratios all significantly decreased. (2) Soil microbial entropy nitrogen (qMBN) and soil microbial imbalances in Cimb:Nimb increased while soil microbial entropy carbon (qMBC), soil microbial entropy phosphorus (qMBP), and soil microbial imbalances in Cimb:Pimb and Nimb:Pimb decreased over time following abandonment. (3) Redundancy analysis (RDA) indicated that Csoil:Nsoil and Cmic:Pmic ratios were key influencing factors of microbial quotient (qMB), explaining 55.35 % and 24.39 % of variation, respectively. Following abandonment, positive or negative successional impacts on Csoil:Nsoil:Psoil, microbial C, N, P stoichiometric imbalances (Cimb:Nimb:Pimb), and Csoil:Nsoil:Psoil ratios had a positive effect on qMB. Collectively, these findings highlight the importance of Csoil:Nsoil:Psoil and Cimb:Nimb:Pimb ratios in regulating qMB induced by vegetation succession following Ph. edulis abandonment, and provide valuable information for vegetation restoration and establishment of bamboo mixed forest.

Effects of nitrogen addition and seasonal change on arbuscular mycorrhizal fungi community diversity in a poplar plantation

Arbuscular mycorrhizal (AM) fungi play a crucial role in carbon (C), nitrogen (N), and phosphorous (P) biogeochemical cycling. Therefore, it is essential to determine the seasonal responses of the AM fungal community to N addition to understanding better the ecological processes against a background of intensified N deposition. Based on an ongoing field simulation experiment with five N addition levels (0, 5, 10, 15, and 30 gN·m−2·a−1) in a 5-year-old poplar plantation at Dongtai Forest Farm in Yancheng, Jiangsu province, eastern China, soil physicochemical properties, the root colonization rate, and the rhizosphere soil AM fungal community diversity and composition in four seasons (summer, autumn, winter, and spring) were investigated. Meanwhile, the relationships between the characteristics of the AM fungal community and soil environmental factors were analyzed. High-throughput sequencing showed that the dominant genera in the poplar plantation were Glomus (average relative abundance 87.52%), Diversispora (9.62%), and Acaulospora (1.85%). The addition of N significantly increased the root colonization rate in spring. The diversity of the AM fungal community (Chao and Shannon indexes) was primarily affected by seasonal change rather than N addition, and the diversity in summer was significantly lower than in the other three seasons. Redundancy analysis showed that soil temperature, available P, total P, and pH significantly affected the structure of the AM fungal community. It can be concluded N addition primarily influenced the root colonization rate, whereas seasonal change had a notable effect on the AM fungal community diversity. Although seasonal change and N addition greatly influenced the composition, seasonal change exerted a more substantial effect than N addition. These results will improve our understanding of the underground ecological processes in poplar plantation ecosystems.

Does Forest Soil Fungal Community Respond to Short-Term Simulated Nitrogen Deposition in Different Forests in Eastern China?

Nitrogen (N) deposition has changed plants and soil microbes remarkably, which deeply alters the structures and functions of terrestrial ecosystems. However, how forest fungal diversity, community compositions, and their potential functions respond to N deposition is still lacking in exploration at a large scale. In this study, we conducted a short-term (4-5 years) experiment of artificial N addition to simulated N deposition in five typical forest ecosystems across eastern China, which includes tropical montane rainforest, subtropical evergreen broadleaved forest, temperate deciduous broadleaved forest, temperate broadleaved and conifer mixed forest, and boreal forest along a latitudinal gradient from tropical to cold temperature zones. Fungal compositions were identified using high-throughput sequencing at the topsoil layer. The results showed that fungal diversity and fungal community compositions among forests varied apparently for both unfertilized and fertilized soils. Generally, soil fungal diversity, communities, and their potential functions responded sluggishly to short-term N addition, whereas the fungal Shannon index was increased in the tropical forest. In addition, environmental heterogeneity explained most of the variation among fungal communities along the latitudinal gradient. Specifically, soil C: N ratio and soil water content were the most important factors driving fungal diversity, whereas mean annual temperature and microbial nutrient limitation mainly shaped fungal community structure and functional compositions. Topsoil fungal communities in eastern forest ecosystems in China were more sensitive to environmental heterogeneity rather than short-term N addition. Our study further emphasized the importance of simultaneously evaluating soil fungal communities in different forest types in response to atmospheric N deposition.

The Diversity of Soil Bacteria and Fungi Under Altered Nitrogen and Rainfall Patterns in a Temperate Steppe

The response of soil microorganisms to altered nitrogen (N) and rainfall patterns plays an important role in understanding ecosystem carbon and nitrogen cycling processes under global change. Previous studies have separately focused on the effects of N addition and rainfall on soil microbial diversity and community composition. However, the combined and interactive impact of N addition and rainfall on soil microbial diversity and function mediated by plant and soil processes have been poorly investigated for grassland ecosystems. Here, we conducted a field experiment with simulated N addition (N addition: 10 g N m^–2yr^–1) and altered rainfall pattern [control, rainfall reduction (compared to control –50%); rainfall addition (compared to control + 50%)] to study their interactive effects on soil microbial diversity and function in a temperate steppe of Inner Mongolia. Our results showed that N addition and rainfall addition significantly increased soil bacterial diversity, and the bacterial diversity was positively correlated with soil microbial biomass nitrogen, inorganic nitrogen, and Stipa krylovii root exudate C:N ratio, Allium polyrhizum root exudate C and N, and A. polyrhizum root exudate C:N ratio. N addition and rainfall reduction significantly reduced fungal diversity, which correlated closely with soil microbial biomass carbon and the C:N ratio of A. polyrhizum root exudates. Bacteria were mainly eutrophic r-strategists, and the responses of bacterial function guilds to the interaction between N addition and rainfall pattern were not significant. However, the arbuscular mycorrhizal fungi (AMF), in the functional classification of fungi, were significantly reduced under the condition of N addition and rainfall reduction, and the absolute abundance of the phylum Glomeromycota increased under rainfall addition, suggesting that AMFs are sensitive to altered N and rainfall patterns over short timescales (1 year). Collectively, our results have important implications for understanding the plant–soil–microbe system of grasslands under climate change.

Divergent responses of soil microbial functional groups to long-term high nitrogen presence in the tropical forests

A massive rise in atmospheric nitrogen deposition (ND) has threatened ecosystem health through accelerating soil nitrogen (N) cycling rates. While soil microbes serve a crucial function in soil N transformation, it remains poorly understood on how excess ND affects microbial functional populations regulating soil N transformation in tropical forests. To address this gap, we conducted 13-year N (as NH₄NO₃) addition experiments in one N-rich tropical primary forest (PF) and two N-poor tropical reforested forests (rehabilitated and disturbed) in South China. Based on our data, 13-year N introduction markedly enhanced soil N₂O generation in all forests, regardless of soil N status, but microbial functional groups showed divergent responses to excess N addition among the studied forests. In the PF, long-term N introduction markedly decreased presence of bacterial 16S rRNA gene, nitrifier (amoA) and denitrifier genes (nirK, nirS and nosZ) and bacteria/fungi ratio, which could be attributed to the decreases in soil pH, dissolved organic carbon to N ratio and understory plant richness. In the two reforested forests, however, long-term N introduction generally did neither alter soil properties nor the abundance of most microbial groups. We further found that the elevated N₂O generation was related to the increased soil N availability and decreased nosZ abundance, and the PF has the highest N₂O generation than the other two forests. Overall, our data indicates that the baseline soil N status may dominate response of microbial functional groups to ND in tropical forests, and N-rich forests are more responsive to excess N inputs, compared to those with low-N status. Forests with high soil N status can produce more N₂O than those with low-N status. With the spread of elevated ND from temperate to tropical zones, tropical forests should merit more attention because ecosystem N saturation may be common and high N₂O emission will occur.

Loss of soil microbial residue carbon by converting a tropical forest to tea plantation

Land-use change can lead to profound changes in the storage of soil organic carbon (SOC) in the tropics. Soil microbial residues make up the majority of persistent SOC pools, yet the impact of land-use change on microbial residue C accumulation in the tropics is not well understood. Here, we investigated how the conversion of tropical primary montane rainforest to secondary forest and the conversions of secondary forest to Prunus salicina plantation and tea plantation, influence the accumulation of soil microbial residue C (indicated by amino sugars). Our results showed that the secondary forest had a higher SOC than that of the primary forest (+63%), while they had no difference in microbial residue C concentration, indicating a relatively slow microbial-derived C accrual during secondary succession. Moreover, the P. salicina plantation and tea plantation had lower SOC than the secondary forest (-53% and -57%, respectively). A decrease in fungal biomass (-51%) resulted in less fungal and total residue C concentrations in the tea plantation than in the secondary forest (-38% and -35%, respectively), indicating microbial-derived C loss following the forest conversion. The change in microbial residue C depended on litter standing crop rather than soil nutrient and root biomass. Litter standing crop affected microbial residue C concentration by regulating fungal biomass and hydrolytic enzyme activities. Taken together, our results highlight that litter-microbe interactions drive microbial residue C accumulation following forest conversions in the tropics.

Metabarcoding analysis of the soil fungal community to aid the conservation of underexplored church forests in Ethiopia

Most of the Dry Afromontane forests in the northern part of Ethiopia are located around church territories and, hence, are called church forests. These forests are biodiversity islands and provide key ecosystem services to local communities. A previous study of church forest fungal species was based on sporocarp collections. However, to obtain a complete picture of the fungal community, the total fungal community present in the soil needs to be analyzed. This information is important to integrate church forests into global biodiversity conservation strategies and to understand what actions are required to conserve church forests and their biological components, including fungi, which are known for their exceptionally high diversity levels. We assessed soil fungal communities in three church forests using ITS2 rDNA metabarcoding. In total, 5152 fungal operational taxonomic units representing 16 fungal phyla were identified. Saprotrophs followed by ectomycorrhizal fungi and animal pathogens dominated fungal communities. Significant differences in diversity and richness were observed between forests. Non-metric multidimensional scaling confirmed that fungal community composition differed in each forest. The composition was influenced by climatic, edaphic, vegetation, and spatial variables. Linear relationships were found between tree basal area and the abundance of total fungi and trophic groups. Forest management strategies that consider cover, tree density, enrichment plantations of indigenous host tree species, and environmental factors would offer suitable habitats for fungal diversity, production, and function in these forest systems. The application of the baseline information obtained in this study could assist other countries with similar forest conservation issues due to deforestation and forest fragmentation.

Intercropping of Leguminous and Non-Leguminous Desert Plant Species Does Not Facilitate Phosphorus Mineralization and Plant Nutrition

More efficient use of soil resources, such as nitrogen (N) and phosphorus (P), can improve plant community resistance and resilience against drought in arid and semi-arid lands. Intercropping of legume and non-legumes can be an effective practice for enhancing P mineralization uptake, and plant nutrient status. However, it remains unclear how intercropping systems using desert plant species impact soil-plant P fractions and how they affect N and water uptake capacity. Alhagi sparsifolia (a legume) and Karelinia caspia (a non-legume) are dominant plant species in the Taklamakan Desert in Xinjiang Province, China. However, there is a lack of knowledge of whether these species, when intercropped, can trigger synergistic processes and mechanisms that drive more efficient use of soil resources. Thus, in a field experiment over two years, we investigated the impact of monoculture and intercropping of these plant species on soil-plant P fractions and soil-plant nutrients. Both plant species’ foliar nutrient (N, P, and K) concentrations were higher under monoculture than intercropping (except K in K. caspia). Nucleic acid P was higher in the monoculture plots of A. sparsifolia, consistent with higher soil labile P, while metabolic P was higher in monoculture K. caspia, associated with higher soil moderately labile Pi. However, both species had a higher residual P percentage in the intercropping system. Soils from monoculture and intercropped plots contained similar microbial biomass carbon (MBC), but lower microbial biomass N:microbial biomass phosphorus (MBN:MBP) ratio associated with reduced N-acetylglucosaminidase (NAG) activity in the intercropped soils. This, together with the high MBC:MBN ratio in intercropping and the lack of apparent general effects of intercropping on MBC:MBP, strongly suggest that intercropping improved microbe N- but not P-use efficiency. Interestingly, while EC and SWC were higher in the soil of the K. caspia monoculture plots, EC was significantly lower in the intercropped plots. Plants obtained better foliar nutrition and soil P mineralization in monocultures than in intercropping systems. The possible positive implications of intercropping for reducing soil salinization and improving soil water uptake and microbial N-use efficiency could have advantages in the long term and its utilization should be explored further in future studies.

Long-Term Nitrogen Deposition Alters Ectomycorrhizal Community Composition and Function in a Poplar Plantation

The continuous upsurge in soil nitrogen (N) enrichment has had strong impacts on the structure and function of ecosystems. Elucidating how plant ectomycorrhizal fungi (EMF) mutualists respond to this additional N will facilitate the rapid development and implementation of more broadly applicable management and remediation strategies. For this study, we investigated the responses of EMF communities to increased N, and how other abiotic environmental factors impacted them. Consequently, we conducted an eight-year N addition experiment in a poplar plantation in coastal eastern China that included five N addition levels: 0 (N₀), 50 (N₁), 100 (N₂), 150 (N₃), and 300 (N₄) kg N ha⁻¹ yr⁻¹. We observed that excessive N inputs reduced the colonization rate and species richness of EMF, and altered its community structure and functional traits. The total carbon content of the humus layer and available phosphorus in the mineral soil were important drivers of EMF abundance, while the content of ammonium in the humus layer and mineral soil determined the variations in the EMF community structure and mycelium foraging type. Our findings indicated that long-term N addition induced soil nutrient imbalances that resulted in a severe decline in EMF abundance and loss of functional diversity in poplar plantations.

Nutrient availability is a dominant predictor of soil bacterial and fungal community composition after nitrogen addition in subtropical acidic forests

Nutrient addition to forest ecosystems significantly influences belowground microbial diversity, community structure, and ecosystem functioning. Nitrogen (N) addition in forests is common in China, especially in the southeast region. However, the influence of N addition on belowground soil microbial community diversity in subtropical forests remains unclear. In May 2018, we randomly selected 12 experimental plots in a Pinus taiwanensis forest within the Daiyun Mountain Nature Reserve, Fujian Province, China, and subjected them to N addition treatments for one year. We investigated the responses of the soil microbial communities and identified the major elements that influenced microbial community composition in the experimental plots. The present study included three N treatments, i.e., the control (CT), low N addition (LN, 40 kg N ha^-1 yr^-1), and high N addition (HN, 80 kg N ha^-1 yr^-1), and two depths, 0−10 cm (topsoil) and 10−20 cm (subsoil), which were all sampled in the growing season (May) of 2019. Soil microbial diversity and community composition in the topsoil and subsoil were investigated using high-throughput sequencing of bacterial 16S rDNA genes and fungal internal transcribed spacer sequences. According to our results, 1) soil dissolved organic carbon (DOC) significantly decreased after HN addition, and available nitrogen (AN) significantly declined after LN addition, 2) bacterial α-diversity in the subsoil significantly decreased with HN addition, which was affected significantly by the interaction between N addition and soil layer, and 3) soil DOC, rather than pH, was the dominant environmental factor influencing soil bacterial community composition, while AN and MBN were the best predictors of soil fungal community structure dynamics. Moreover, N addition influence both diversity and community composition of soil bacteria more than those of fungi in the subtropical forests. The results of the present study provide further evidence to support shifts in soil microbial community structure in acidic subtropical forests in response to increasing N deposition.

Effects of nitrogen addition on microbial residues and their contribution to soil organic carbon in China's forests from tropical to boreal zone

Atmospheric nitrogen (N) deposition has a significant influence on soil organic carbon (SOC) accumulation in forest ecosystems. Microbial residues, as by-products of microbial anabolism, account for a significant fraction of soil C pools. However, how N deposition affects the accumulation of soil microbial residues in different forest biomes remains unclear. Here, we investigated the effects of six/seven-year N additions on microbial residues (amino sugar biomarkers) in eight forests from tropical to boreal zone in eastern China. Our results showed a minor change in the soil microbial residue concentrations but a significant change in the contribution of microbial residue-C to SOC after N addition. The contribution of fungal residue-C to SOC decreased under low N addition (50 kg N ha^-1 yr^-1) in the tropical secondary forest (-19%), but increased under high N addition (100 kg N ha^-1 yr^-1) in the temperate Korean pine mixed forest (+21%). The contribution of bacterial residue-C to SOC increased under the high N addition in the subtropical Castanopsis carlesii forest (+26%) and under the low N addition in the temperate birch forest (+38%), respectively. The responses of microbial residue-C in SOC to N addition depended on the changes in soil total N concentration and fungi to bacteria ratio under N addition and climate. Taken together, these findings provide the experimental evidence that N addition diversely regulates the formation and composition of microbial-derived C in SOC in forest ecosystems.

Phosphorus Reduces Negative Effects of Nitrogen Addition on Soil Microbial Communities and Functions

Increased soil nitrogen (N) from atmospheric N deposition could change microbial communities and functions. However, the underlying mechanisms and whether soil phosphorus (P) status are responsible for these changes still have not been well explained. Here, we investigated the effects of N and P additions on soil bacterial and fungal communities and predicted their functional compositions in a temperate forest. We found that N addition significantly decreased soil bacterial diversity in the organic (O) horizon, but tended to increase bacterial diversity in the mineral (A) horizon soil. P addition alone did not significantly change soil bacterial diversity but mitigated the negative effect of N addition on bacterial diversity in the O horizon. Neither N addition nor P addition significantly influenced soil fungal diversity. Changes in soil microbial community composition under N and P additions were mainly due to the shifts in soil pH and NO3- contents. N addition can affect bacterial functional potentials, such as ureolysis, N fixation, respiration, decomposition of organic matter processes, and fungal guilds, such as pathogen, saprotroph, and mycorrhizal fungi, by which more C probably was lost in O horizon soil under increased N deposition. However, P addition can alleviate or switch the effects of increased N deposition on the microbial functional potentials in O horizon soil and may even be a benefit for more C sequestration in A horizon soil. Our results highlight the different responses of microorganisms to N and P additions between O and A horizons and provides an important insight for predicting the changes in forest C storage status under increasing N deposition in the future.

Canopy and understory nitrogen additions did not significantly change the community structure of soil fauna under a mature subtropical forest

Increasing nitrogen (N) deposition has seriously harmed the structure and function of ecosystems throughout the world and this problem has been increasing. How N deposition affects soil faunal communities is poorly understood, compared to plant and microbial communities. Canopy and understory N additions of 25 and 50 kg ha^-1 year^-1 were employed to determine whether the effects of N addition on the soil fauna differ between N released to the canopy or to the understory. Specifically, we examined how the soil fauna survives when N additions produce desynchronized and complex impacts on the soil, microbes and litter quantity under mature subtropical forest ecosystems. Our results showed that no significant differences were observed between the soil faunal communities receiving canopy and understory N additions. This is consistent with our observation that the concentrations of ammonia nitrogen and nitrate nitrogen in the soil did not significantly differ under the two different methods of applying N. There were no observed effects on the litter quantity, soil microbial Phospholipid Fatty Acids or soil physical-chemical properties; therefore, it is not surprising that N treatments for 4 years did not significantly alter the community structure of soil fauna under the mature subtropical forest sites. However, the shifts in seasonal differences in the microbial communities under the N treatments had a positive effect on soil microbial development compared to control, which might also produce a time-delay influence on the relative development of the soil fauna under mature subtropical forest in the future. Further dynamic monitoring is needed to illustrate the possible effects and mechanisms by which increasing N deposition may alter soil faunal development in the future.

Human Activities Inducing High CH4 Diffusive Fluxes in an Agricultural River Catchment in Subtropical China

Methane (CH4) is one of the key greenhouse gases (GHGs) in the atmosphere with current concentration of 1859 ppb in 2017 due to climate change and anthropogenic activities. Rivers are of increasing concern due to sources of atmospheric CH4. However, knowledge and data limitations exist for field studies of subtropical agricultural river catchments, particularly in southern China. The headspace balance method and the diffusion model method were employed to assess spatiotemporal variations of CH4 diffusive fluxes from April 2015 to January 2016 in four order reaches (S1, S2, S3, and S4) of the Tuojia River, Hunan, China. Results indicated that both the dissolved concentrations and diffusive fluxes of CH4 showed obvious spatiotemporal variations. The observed mean concentration and diffusive flux of CH4 were 0.40 ± 0.02 μmol L−1 and 41.19 ± 2.50 µg m−2 h−1, respectively, showing the river to be a strong source of atmospheric CH4. The CH4 diffusive fluxes during the rice-growing seasons were significantly greater than the winter fallow season (an increase of 80.26%). The spatial distribution of CH4 diffusive fluxes increased gradually from (17.58 ± 1.42) to (55.56 ± 4.32) µg m−2 h−1 due to the organic and nutrient loading into the river waterbodies, with the maximum value at location S2 and the minimum value at location S1. Correlation analysis showed that the CH4 diffusive fluxes exhibited a positive relationship with the dissolved organic carbon (DOC), salinity, and water temperature (WT), while a negative correlation occurred between CH4 diffusive fluxes and the dissolved oxygen (DO) concentration, as well as the pH value. Our findings highlighted that a good understanding of exogenous nutrient loading in agricultural catchments will clarify the influence of human activities on river water quality and then constrain the global CH4 budget.

Benefit of China's reduction in nitrogen oxides emission to natural ecosystems in East Asia with respect to critical load exceedance

The emission of nitrogen oxides (NO_x) in China decreased by 15% from 2010 to 2015 (without a significant decrease in NH₃ emission), resulting in the decline of nitrogen (N) deposition in East Asia. Empirical N critical load exceedance was used to assess the benefit of the NO_x emission reduction in China to natural ecosystems in East Asia. Empirical N critical loads for major forest and grassland types in East Asia were assigned based on field manipulation experiments for N effects. The critical load map based on the minimum of the critical load range of each vegetation type showed that empirical critical loads were generally lower in the Tibetan Plateau and some parts of northeastern China (≤5 kgN·ha^-1·a^-1), and higher in northern and southern China (≥20 kgN·ha^-1·a^-1). Empirical critical loads were also low in some parts of central and northern Japan (≤5 kgN·ha^-1·a^-1) and the south Korean Peninsula (5-10 kgN·ha^-1·a^-1). As a benefit of NO_x emission reduction in China, N deposition in East Asia decreased significantly from 2010 to 2015. The total area and total amount of critical load exceedance in East Asia declined 4.6% and 14.3% respectively, suggesting great benefits to natural ecosystems.

Effects of urbanization on plant phosphorus availability in broadleaf and needleleaf subtropical forests

Urbanization, the migration of populations from rural to urban areas, has been causing great stress on natural environments, leading to air pollution and nitrogen (N) deposition, negatively affecting forest health. Although there is evidence that urbanization has changed forest N cycling, little is known about whether urbanization also changes the availability of phosphorus (P), which is important for plant growth and forest productivity. To address this question, we carried out a survey in the Pearl River Delta region, the world's largest urban area in southern China, using two types of representative forests, the evergreen broadleaf forests (BFs) and pine plantations (PPs). The leaf N:P ratios in the two forest types were high (20-50) with a significant increasing pattern along the rural-to-urban gradient. The ratios of leaf P:K and P:Na declined along the rural-to-urban gradient, whereas leaf P content did not change in BF but decreased in PP along the rural-to-urban gradient, suggesting that leaf P became limiting along urbanization. The abundance of actinomycetes and gram-negative bacteria decreased along the rural-to-urban gradient, indicating the negative effects of urbanization on soil microorganisms. Principal component analysis indicated that divergent key factors respond to the urbanization and affect plant P limitation in the two forest types. In BF, broadleaf trees showed a greater response to N deposition from urbanization indicating direct leaf N uptake from N deposition is a key factor for plant P limitation. Alternatively, in PP, our findings suggest soil acidification is an important factor accelerating plant P limitation. Our study revealed that urbanization intensifies plant P limitation in subtropical forests, and the effects vary depending on forest types. Our findings provide empirical information to support the management of forest ecosystems and evaluation of urbanization effects on forest health.

Microbial community structure and the relationship with soil carbon and nitrogen in an original Korean pine forest of Changbai Mountain, China

BACKGROUND

The broad-leaved Korean pine mixed forest is an important and typical component of a global temperate forest. Soil microbes are the main driver of biogeochemical cycling in this forest ecosystem and have complex interactions with carbon (C) and nitrogen (N) components in the soil.

RESULTS

We investigated the vertical soil microbial community structure in a primary Korean pine-broadleaved mixed forest in Changbai Mountain (from 699 to 1177 m) and analyzed the relationship between the microbial community and both C and N components in the soil. The results showed that the total phospholipid fatty acid (PLFA) of soil microbes and Gram-negative bacteria (G-), Gram-positive bacteria (G+), fungi (F), arbuscular mycorrhizal fungi (AMF), and Actinomycetes varied significantly (p < 0.05) at different sites (elevations). The ratio of fungal PLFAs to bacterial PLFAs (F/B) was higher at site H1, and H2. The relationship between microbial community composition and geographic distance did not show a distance-decay pattern. The coefficients of variation for bacteria were maximum among different sites (elevations). Total soil organic carbon (TOC), total nitrogen (TN), soil water content (W), and the ratio of breast-height basal area of coniferous trees to that of broad-leaved tree species (RBA) were the main contributors to the variation observed in each subgroup of microbial PLFAs. The structure equation model showed that TOC had a significant direct effect on bacterial biomass and an indirect effect upon bacterial and fungal biomass via soil readily oxidized organic carbon (ROC). No significant relationship was observed between soil N fraction and the biomass of fungi and bacteria.

CONCLUSION

The total PLFAs (tPLFA) and PLFAs of soil microbes, including G-, G+, F, AMF, and Actinomycetes, were significantly affected by elevation. Bacteria were more sensitive to changes in elevation than other microbes. Environmental heterogeneity was the main factor affecting the geographical distribution pattern of microbial community structure. TOC, TN, W and RBA were the main driving factors for the change in soil microbial biomass. C fraction was the main factor affecting the biomass of fungi and bacteria and ROC was one of the main sources of the microbial-derived C pool.

Clomazone influence soil microbial community and soil nitrogen cycling

We designed an indoor mesocosm experiment to investigate the long-term effects of exposure to clomazone, a widely used herbicide, on soil microbial communities and their nitrogen (N) cycling functions. Clomazone was applied to two typical soils from China at three concentrations: 0.8 (the recommended dosage), 8 and 80 mg kg^-1 soil dry weight, and the mix was incubated for 90 days. Samples were removed periodically for assay with several techniques. The half-lives of clomazone in this experiment were 11-126 d. Results were significant only for the highest clomazone concentration. Next-generation sequencing of the 16S and 18S rDNA genes revealed that bacterial diversity significantly decreased whereas fungal abundance increased after day 60 but with no detectable effect on the microbial community. Hierarchical cluster and principal coordinates analysis revealed that the bacterial community structure was negatively impacted. Linear discriminant analysis of effect size identified Sphingomonas and Arthrobacter as the predominant bacterial species. Finally, we measured soil NH₄⁺ and NO₃^- concentrations and used real-time PCR to analyze the abundance of the N-cycling genes, nifH and amoA. In the first 30 days, the NO₃^--N content and the number of ammonia-oxidizing bacteria increased. N₂-fixing bacteria were inhibited after 60 days, but the NH₄⁺-N concentration remained unchanged and was likely provided by ammoniation.

Responses of forest ecosystems to increasing N deposition in China: A critical review

China has been experiencing a rapid increase in nitrogen (N) deposition due to intensified anthropogenic N emissions since the late 1970s. By synthesizing experimental and observational data taken from literature, we reviewed the responses of China's forests to increasing N deposition over time, with a focus on soil biogeochemical properties and acidification, plant nutrient stoichiometry, understory biodiversity, forest growth, and carbon (C) sequestration. Nitrogen deposition generally increased soil N availability and soil N leaching and decreased soil pH in China's forests. Consequently, microbial biomass C and microbial biomass N were both decreased, especially in subtropical forests. Nitrogen deposition increased the leaf N concentration and phosphorus resorption efficiency, which might induce nutrient imbalances in the forest ecosystems. Although experimental N addition might not affect plant species richness in the overstorey, it did significantly alter species composition of understory plants. Increased N stimulated tree growth in temperate forests, but this effect was weak in subtropical and tropical forests. Soil respiration in temperate forests was non-linearly responsive to N additions, with an increase at dosages of <60 kg N ha^-1 yr^-1 and a decrease at dosages of >60 kg N ha^-1 yr^-1. However, it was consistently decreased by increased N inputs in subtropical and tropical forests. In light of future trends in the composition (e.g., reduced N vs. oxidized N) and the loads of N deposition in China, further research on the effects of N deposition on forest ecosystems will have critical implications for the management strategies of China's forests.

A keystone microbial enzyme for nitrogen control of soil carbon storage

Agricultural and industrial activities have increased atmospheric nitrogen (N) deposition to ecosystems worldwide. N deposition can stimulate plant growth and soil carbon (C) input, enhancing soil C storage. Changes in microbial decomposition could also influence soil C storage, yet this influence has been difficult to discern, partly because of the variable effects of added N on the microbial enzymes involved. We show, using meta-analysis, that added N reduced the activity of lignin-modifying enzymes (LMEs), and that this N-induced enzyme suppression was associated with increases in soil C. In contrast, N-induced changes in cellulase activity were unrelated to changes in soil C. Moreover, the effects of added soil N on LME activity accounted for more of the variation in responses of soil C than a wide range of other environmental and experimental factors. Our results suggest that, through responses of a single enzyme system to added N, soil microorganisms drive long-term changes in soil C accumulation. Incorporating this microbial influence on ecosystem biogeochemistry into Earth system models could improve predictions of ecosystem C dynamics.

Ammonium nitrogen content is a dominant predictor of bacterial community composition in an acidic forest soil with exogenous nitrogen enrichment

Soil pH is a dominant factor affecting bacterial community composition in acidic, neutral, and alkaline soils but not in severely acidic soils (pH<4.5). We conducted a nitrogen (N) addition experiment in the field in severely acidic forest soil to determine the response of the soil bacterial community and identified the dominant factor in determining community composition. Using a high-throughput Illumina HiSeq sequencing platform, we found that high levels of N addition significantly decreased soil bacterial diversity and altered the composition of the soil bacterial community. The addition of nitrogen increased the relative abundance of copiotrophic taxa (Proteobacteria and Actinobacteria phyla) but decreased the relative abundance of oligotrophic taxa (Acidobacteria, Verrucomicrobia, Planctomycetes, and WD272). In particular, the relative abundance of N-cycling-related microbes (e.g., Burkholderia and Rhizomicrobium genera) also increased upon addition of N. Our correlation analysis showed that soil ammonium nitrogen concentration, rather than pH or nitrate nitrogen concentration, was a key environmental parameter determining the composition of the soil bacterial community. However, these bacterial response behaviors were observed only in the dry season and not in the wet season, indicating that high temperature and precipitation in the wet season may alleviate the impact of the addition of N on soil bacterial diversity and community composition. These results suggest that the soil bacterial community shifted to copiotrophic taxa with higher N demands under increased N addition in severely acidic forest soil.

Impact of dissolved oxygen on the microbial community structure of an intermittent biological aerated filter (IBAF) and the removal efficiency of gasification wastewater

A novel IBAF system (altered conventional biological aerated filter (BAF) for intermittent aeration) was used to treat BDD anodes electrochemical oxidation gasification wastewater effluent, after which 454 pyrosequencing was applied to investigate the bacterial community of IBAF and demonstrate the relationship between dissolved oxygen (DO) and the bacterial community. The results showed that the concentration of COD, NH₄⁺-N and NO₃^--N reached 55.08, 7.64 and 7.76 mg/L, respectively, in IBAF effluent because of changes in the DO concentration at 30 days after system start-up. The bacterial community results revealed that the 40 cm sample had the highest bacterial diversity. The bacterial species were approximate in total samples at phylum and family level, but the relative abundance was significantly different because of change in DO concentration. In addition, sample distance analysis indicated that the similarity of different samples was related to the DO concentration at different heights.

Nitrogen deposition has minor effect on soil extracellular enzyme activities in six Chinese forests

Soil extracellular enzymes play a key role in mediating a range of forest ecosystem functions (i.e., carbon and nutrients cycling and biological productivity), particularly in the face of atmospheric N deposition that has been increasing at an unprecedented rate globally. However, most studies have focused only on surface soils in a single ecosystem. In this study, we aimed to determine whether the effect of simulated N deposition on the activities and ratios of soil enzymes changes with soil depth across six forest ecosystems in eastern China. We collected soil samples from three blocks×four soil depths (0-10cm, 10-20cm, 20-40cm and 40-60cm)×three N treatment levels (control, 50 and 100kgNha^-1year^-1) at each of the six forest ecosystems. We measured the activities of seven soil enzymes involved in C-, N- and P-cycling. We found that 4-5years of N addition had no significant effect on the activities and ratios of these enzymes in most cases. The interactions among N addition, site and soil depth on soil enzyme activities were not significant, except that acid phosphatase activity showed site-specific responses to N addition. Our findings suggest that the activities of soil enzymes involved in C- and N-cycling generally do not track simulated N deposition in the six forest ecosystems. Further work on plant, soil and microbial characteristics is needed to better understand the mechanisms of soil enzyme activities in response to N deposition in forest ecosystems.