Population characteristics and influential factors of nitrogen cycling functional genes in heavy metal contaminated soil remediated by biochar and compost

Biochar and peat amendments affect nitrogen retention, microbial capacity and nitrogen cycling microbial communities in a metal and polycyclic aromatic hydrocarbon contaminated urban soil

Soil contaminants may restrict soil functions. A promising soil remediation method is amendment with biochar, which has the potential to both adsorb contaminants and improve soil health. However, effects of biochar amendment on soil-plant nitrogen (N) dynamics and N cycling microbial guilds in contaminated soils are still poorly understood. Here, a metal- and polycyclic aromatic hydrocarbon (PAH) contaminated soil was amended with either biochar (0, 3, 6 % w/w) and/or peat (0, 1.5, 3 % w/w) in a full-factorial design and sown with perennial ryegrass in an outdoor field trial. After three months, N and the stable isotopic ratio δ15N was measured in soil, roots and leaves, along with microbial responses. Aboveground grass biomass decreased by 30 % and leaf N content by 20 % with biochar, while peat alone had no effect. Peat in particular, but also biochar, stimulated the abundance of microorganisms (measured as 16S rRNA gene copy number) and basal respiration. Microbial substrate utilization (MicroResp™) was altered differentially, as peat increased respiration of all carbon sources, while for biochar, respiration of carboxylic acids increased, sugars decreased, and was unaffected for amino acids. Biochar increased the abundance of ammonia oxidizing archaea, while peat stimulated ammonia oxidizing bacteria, Nitrobacter-type nitrite oxidizers and comB-type complete ammonia oxidizers. Biochar and peat also increased nitrous oxide reducing communities (nosZI and nosZII), while peat alone or combined with biochar also increased abundance of nirK-type denitrifiers. However, biochar and peat lowered leaf δ15N by 2-4 ‰, indicating that processes causing gaseous N losses, like denitrification and ammonia volatilization, were reduced compared to the untreated contaminated soil, probably an effect of biotic N immobilization. Overall, this study shows that in addition to contaminant stabilization, amendment with biochar and peat can increase N retention while improving microbial capacity to perform important soil functions.

Enhancement of Mn2+, Fe2+ and NH4+-N removal by biochar synergistic strains combined with activated sludge in real wastewater treatment

Acinetobacter sp. AL-6 combining with biochar was adapted in activated sludge (AS & co-system) to decontaminate Mn2+, Fe2+ and NH4+-N, and treat activated sludge (AS) for its activity and settling performance improvement. Specifically, the co-system promoted the growth of bacteria in the activated sludge, thus increasing its ability to nitrify and adsorb Mn2+ and Fe2+, resulting in the removal of high concentrations of NH4+-N, Mn2+, Fe2+ and COD in the reactor by 100%, 100%, 100%, and 96.8%, respectively. And the pH of wastewater was increased from 4 to 8.5 by co-system also facilitated the precipitation of Mn2+ and Fe2+. The MLVSS/MLSS ratio increased from 0.64 to 0.95 and SVI30 decreased from 92.54 to 1.54 after the addition of co-system, which indicated that biochar helped to improve the activity and settling performance of activated sludge and prevented it from being damaged by the compound Mn2+ and Fe2+. In addition, biochar promoted the increase of the tyrosine-like protein substance and humic acid-like organic matter in the sludge EPS, thus enhanced the ability of sludge to adsorb Mn2+ and Fe2+. Concretely, compared with AS group, the proteins content and polysaccharides content of the AS & co-system group were increased by 13.14 times and 6.30 times respectively. Further, microbial diversity analysis showed that more resistant bacteria and dominant bacteria Acinetobacter sp. AL-6 in sludge enhanced the nitrification and adsorption of manganese and iron under the promotion of biochar. Pre-eminently, the more effective AS & co-system were applied to the removal of actual electrolytic manganese slag leachate taken from the contaminated site, and the removal of NH4+-N, Mn2+, Fe2+ and COD remained high at 100%, 100%, 71.82% and 94.72%, respectively, revealing advanced value for high engineering applications of AS & co-system.

Exploring the potential of biochar for the remediation of microbial communities and element cycling in microplastic-contaminated soil

The detrimental effects of microplastics (MPs) on soil microbial and elemental raise significant environmental concerns. The potential of remediation with biochar to mitigate these negative impacts remains an open question. The remediation effects of biochar derived from corn and cotton straw on MPs concerning soil microorganisms and element cycling were investigated. Specifically, biochar induced substantial remediations in microbial community structure following MP exposure, restoring and fortifying the symbiotic network while exerting dominance over microbial community changes. A combined treatment of biochar and MPs exhibited a noteworthy increase in the abundance of NH4+, NO3-, and available phosphorous by 0.46-2.1 times, reversing the declining trend of dissolved organic carbon, showing a remarkable increase by 0.36 times. This combined treatment also led to a reduction in the abundance of the nitrogen fixation gene nifH by 0.46 times, while significantly increasing the expression of nitrification genes (amoA and amoB) and denitrification genes (nirS and nirK) by 22.5 times and 1.7 times, respectively. Additionally, the carbon cycle cbbLG gene showed a 2.3-fold increase, and the phosphorus cycle gene phoD increased by 0.1-fold. The mixed treatment enriched element-cycling microorganisms by 4.8 to 9.6 times. In summary, the addition of biochar repaired the negative effects of MPs in terms of microbial community dynamics, element content, gene expression, and functional microbiota. These findings underscore the crucial role of biochar in alleviating the adverse effects of MPs on microbial communities and elemental cycling, providing valuable insights into sustainable environmental remediation strategies.

Potentially toxic elements (PTEs) and ecological risk at waste disposal sites: An analysis of sanitary landfills

This study presents an analysis of soil contamination caused by Ni, Zn, Cd, Cu, and Pb at municipal solid waste (MSW) landfills, with a focus on ecological risk assessment. The approach aims to assess how different landfill practices and environmental conditions affect soil contamination with potentially toxic elements (PTEs) and associated environmental risks. Soil samples were collected from MSW landfills in Poland and the Czech Republic. The research included a comprehensive assessment of PTEs in soils in the context of global environmental regulations. The degree of soil contamination by PTEs was assessed using indices: Geoaccumulation Index (Igeo), Single Pollution Index (Pi), Nemerow Pollution Index (PN), and Load Capacity of a Pollutant (PLI). The ecological risk was determined using the Risk of PTEs (ERi) and Sum of Individual Potential Risk Factors (ERI). The maximum values of the indicators observed for the Radiowo landfill were as follows: Igeo = 4.04 for Cd, Pi = 24.80 for Cd, PN = 18.22 for Cd, PLI = 2.66, ERi = 744 for Cd, ERI = 771.80. The maximum values of the indicators observed for the Zdounky landfill were as follows: Igeo = 1.04 for Cu, Pi = 3.10 for Cu, PN = 2.52 for Cu, PLI = 0.27, ERi = 25 for Cd, ERI = 41.86. The soils of the tested landfills were considered to be non-saline, with electrical conductivity (EC) values less than 2,000 μS/cm. Varying levels of PTEs were observed, and geostatistical analysis highlighted hotspots indicating pollution sources. Elevated concentrations of Cd in the soil indicated potential ecological risks. Concentrations of Cu and lead Pb were well below the thresholds set by the environmental legislation in several countries. In addition, Ni concentrations in the soils of both landfills indicated that the average levels were within acceptable limits. Principal Component Analysis (PCA) revealed common sources of PTEs. The identification of specific risk points at the Radiowo and Zdounky sites contributes to a better understanding of potential hazards in landfill environments. By establishing buffer zones and implementing regular maintenance programs, emerging environmental problems can be addressed in a timely manner.

Combined effects of mulch film-derived microplastics and pesticides on soil microbial communities and element cycling

Pesticides and microplastics (MPs) derived from mulch film in agricultural soil can independently impact soil ecology, yet the consequences of their combined exposure remain unclear. Therefore, the effects of simultaneous exposure to commonly used pesticides (imidacloprid and flumioxazin) and aged mulch film-derived MPs on soil microorganisms and element cycles in cotton fields were investigated. The combined exposure influenced soil microorganisms, alongside processes related to carbon, nitrogen, and phosphorus cycles, exhibiting effects that were either neutralized or enhanced compared to individual exposures. The impact of pesticides in combined exposure was notably more significant and played a dominant role than that of MPs. Specifically, combined exposure intensified changes in soil bacterial community and symbiotic networks. The combined exposure neutralized NH4+, NO3-, DOC, and A-P contents, shifting from 0.33 % and 40.23 % increase in MPs and pesticides individually to a 40.24 % increase. Moreover, combined exposure resulted in the neutralization or amplification of the nitrogen-fixing gene nifH, nitrifying genes (amoA and amoB), and denitrifying genes (nirS and nirK), the carbon cycle gene cbbLG and the phosphorus cycle gene phoD from 0.48 and 2.57-fold increase to a 2.99-fold increase. The combined exposure also led to the neutralization or enhancement of carbon and nitrogen cycle functional microorganisms, shifting from a 1.53-fold inhibition and 10.52-fold increase to a 6.39-fold increase. These findings provide additional insights into the potential risks associated with combined pesticide exposure and MPs, particularly concerning soil microbial communities and elemental cycling processes.

Biochar and nano biochar: Enhancing salt resilience in plants and soil while mitigating greenhouse gas emissions: A comprehensive review

Salinity stress poses a significant challenge to agriculture, impacting soil health, plant growth and contributing to greenhouse gas (GHG) emissions. In response to these intertwined challenges, the use of biochar and its nanoscale counterpart, nano-biochar, has gained increasing attention. This comprehensive review explores the heterogeneous role of biochar and nano-biochar in enhancing salt resilience in plants and soil while concurrently mitigating GHG emissions. The review discusses the effects of these amendments on soil physicochemical properties, improved water and nutrient uptake, reduced oxidative damage, enhanced growth and the alternation of soil microbial communities, enhance soil fertility and resilience. Furthermore, it examines their impact on plant growth, ion homeostasis, osmotic adjustment and plant stress tolerance, promoting plant development under salinity stress conditions. Emphasis is placed on the potential of biochar and nano-biochar to influence soil microbial activities, leading to altered emissions of GHG emissions, particularly nitrous oxide(N2O) and methane(CH4), contributing to climate change mitigation. The comprehensive synthesis of current research findings in this review provides insights into the multifunctional applications of biochar and nano-biochar, highlighting their potential to address salinity stress in agriculture and their role in sustainable soil and environmental management. Moreover, it identifies areas for further investigation, aiming to enhance our understanding of the intricate interplay between biochar, nano-biochar, soil, plants, and greenhouse gas emissions.

Weak magnetic carriers reduce nitrite accumulation and boost denitrification at high nitrate concentrations by enriching functional bacteria and enhancing electron transfer

Biological denitrification is the dominant method for NO3- removal from wastewater, while high NO3- leads to NO2- accumulation and inhibits denitrification performance. In this study, different weak magnetic carriers (0, 0.3, 0.6, 0.9 mT) were used to enhance biological denitrification at NO3- of 50-2400 mg/L. The effect of magnetic carriers on the removal and mechanism of denitrification of high NO3- was investigated. The results showed that 0.6 and 0.9 mT carriers significantly enhanced the TN removal efficiency (>99%) and reduced the accumulation of NO2- (by > 97%) at NO3- of 1200-2400 mg/L 0.6 and 0.9 mT carriers stimulated microbial electron transport by improving the abundances of coenzyme Q-cytochrome C reductase (by 4.44-23.30%) and cytochrome C (by 2.90-16.77%), which contributed to the enhanced elimination of NO3- and NO2-. 0.6 and 0.9 mT carriers increased the activities of NAR (by 3.74-37.59%) and NIR (by 5.01-8.24%). The abundance of narG genes in 0.6 and 0.9 mT was 1.47-2.35 and 1.38-1.75 times that of R1, respectively, and the abundance of nirS genes was 1.49-2.83 and 1.55-2.39 times that of R1, respectively. Denitrifying microorganisms, e.g., Halomonas, Thauera and Pseudomonas were enriched at 0.6 and 0.9 mT carriers, which benefited to the advanced denitrification performance. This study suggests that weak magnetic carriers can help to enhance the biological denitrification of high NO3- wastewater.

Nitrogen (N) "supplementation, slow release, and retention" strategy improves N use efficiency via the synergistic effect of biochar, nitrogen-fixing bacteria, and dicyandiamide

Irrational nitrogen (N) fertilizer management and application practices have led to a range of ecological and environmental problems that seriously threaten food security. In this study, an effective N fertilizer management strategy was established for improving N fertilizer utilization efficiency (NUE). Biochar, N2-fixing bacteria (Enterobacter cloacae), and a nitrification inhibitor (dicyandiamide, DCD) were simultaneously added to the soil during maize cultivation. The goal was to increase soil ammonium nitrogen content and NUE by regulating the relative abundance, enzyme activity, and functional gene expression of N conversion-related soil microbes. Biochar combined with E. cloacae and DCD significantly increased soil N content, and the NUE reached 46.69 %. The relative abundance of Burkholderia and Bradyrhizobium and the activity of nitrogenase increased significantly during biological N2 fixation. Further, the abundance of the nifH gene was significantly up-regulated. The relative abundance of Sphingomonas, Pseudomonas, Nitrospira, and Castellaniella and the activities of ammonia monooxygenase and nitrate reductase decreased significantly during nitrification and denitrification. Moreover, the abundance of the genes amoA and narG was significantly down-regulated. Correlation analyses showed that the increase in soil N2 fixation and the suppression of nitrification and denitrification reactions were the key contributors to the increase in soil N content and NUE. Biochar combined with E. cloacae and DCD synergistically enabled the supplementation, slow release, and retention of N, thus providing adequate N for maize growth. Thus, the combination of biochar, E. cloacae, and DCD is effective for mitigating the irrational application of N fertilizers and reducing N pollution.

Factors regulating interaction among inorganic nitrogen and phosphorus species, plant uptake, and relevant cycling genes in a weakly alkaline soil treated with biochar and inorganic fertilizer

To highlight how biochar affects the interaction between inorganic nitrogen species (ammonium nitrogen, nitrate nitrogen, and nitrite nitrogen: NH4+-N, NO3¯-N, and NO2¯-N) and phosphorus species (calcium phosphate, iron phosphate, and aluminum phosphate: CaP, FeP and AlP) in soil and plant uptake of these nutrients, walnut shell (WS)- and corn cob (CC)-derived biochars (0.5 %, 1 %, 2 %, and 4 %, w/w) were added to a weakly alkaline soil, and then Chinese cabbages were planted. The results showed that the changes in soil inorganic nitrogen were related to biochar feedstock, pyrolysis temperature, and application rate. For soil under the active nitrification condition (dominant NO3¯-N), a significant decrease in the NH4+-N/NO3¯-N ratio after biochar addition indicates enhanced nitrification (excluding WS-derived biochars at 2 % and 4 %), which can be explained by the most positive response of ammonia-oxidizing archaeal amoA to biochar addition. The CC-derived biochar more effectively enhanced soil nitrification than WS-derived biochar did. The addition of 4 % of biochars significantly increased soil inorganic phosphorus, and the addition of CC-derived biochars more effectively increased Ca2P than WS-derived biochars. Biochars significantly decreased plant uptake of phosphorus, while generally had little influence on plant uptake of nitrogen. Interestingly, NO2¯-N in soil significantly positively correlated with total phosphorus in both soil and plant, and significantly negatively correlated with phoC, indicating that a certain degree of NO2¯-N accumulation in soil slightly facilitated plant uptake of phosphorus but inhibited phoC-harboring bacteria. The NO3¯-N in soil significantly positively correlated with Ca2P and Ca8P, while the NH4+-N/NO3¯-N ratio significantly negatively correlated with Ca10P and FeP, indicating that the enhanced nitrification seemed to facilitate the change in phosphorus to readly available ones. This study will help determine how to scientifically and rationally use biochar to regulate inorganic nitrogen and phosphorus species in soil and plant uptake of these nutrients.

Metagenomics reveals taxon-specific responses of soil nitrogen cycling under different fertilization regimes in heavy metal contaminated soil

Soil deficiency, cyclic erosion, and heavy metal pollution have led to fertility loss and ecological function decline in mining areas. Fertilization is an important way to rapidly replenish soil nutrients, which have a major influence on the soil nitrogen cycling process, but different fertilization regimes have different impacts on soil properties and microbial functional potentials. Here, metagenomic sequencing was used to investigate the different responses of key functional genes of microbial nitrogen cycling to fertilization regimes and explore the potential effects of soil physicochemical properties on the key functional genes. The results indicated that AC-HH (ammonium chloride-high frequency and concentration) treatment significantly increased the gene abundance of norC (13.40-fold), nirK (5.46-fold), and napA (5.37-fold). U-HH (urea-high frequency and concentration) treatment significantly increased the gene abundance of hao (6.24-fold), pmoA-amoA (4.32-fold) norC (7.00-fold), nosZ (3.69-fold), and nirK (6.88-fold). Functional genes were distributed differently among the 10 dominant phyla. The nifH and nifK genes were distributed only in Proteobacteria. The hao gene was distributed in Gemmatimonadetes, Nitrospirae and Proteobacteria. Fertilization regimes caused changes in functional redundancy in soil, and nirK and nirB, which are involved in denitrification, were present in different genera. Fertilization regimes with high frequency and high concentration were more likely to increase the gene abundance at the genus level. In summary, this study provides insights into the taxon-specific response of soil nitrogen cycling under different fertilization regimes, where changes in fertilization regimes affect microbial nitrogen cycling by altering soil physicochemical properties in a complex dynamic environment.

Microbiome and transcriptome analyses reveal the influence of calcined dolomite application on Eriocheir sinensis in a rice-crab co-culture system

Co-culture systems of rice and aquatic animals can contribute to the ecological intensification of agriculture by reducing nutrient loss and the need for N fertilizer application and by enhancing nutrient-use efficiency. However, the input of high-protein diets into paddy fields, to facilitate the growth of aquatic animals, has been found to increase N pollution and acidification of the soil. Although soil amendments have been widely used to ameliorate acidic soils, reduce N2O emissions, and improve agronomic production, the relationship between soil amendments and aquatic animal remains unclear. Therefore, this study investigated the effects of calcined dolomite (hereafter referred to as dolomite) as an acidic soil amendment and Ca-Mg supplement in rice-crab co-culture using Eriocheir sinensis crabs (Chinese mitten crabs). High-throughput sequencing was used to examine crab bacterial community composition and crab hepatopancreas biology. Although the water pH was significantly increased in the dolomite group, the number, composition, and diversity of bacteria identified in crab gut microbiome did not vary significantly between the dolomite and control groups. In the dolomite group, the probiotic agents Candidatus Hepatoplasma and Lactobacillus were highly abundant in the crab gut, and immune- and retinol metabolism-related genes were significantly upregulated in the crab hepatopancreas. Overall, dolomite application increased crab health and water pH. Dolomite is a low-cost amendment, with better stability, compared to other soil amendments, thus making it ideal for sustainable and clean rice-aquatic animal co-culture.

Impacts of adding FeSO4 and biochar on nitrogen loss, bacterial community and related functional genes during cattle manure composting

This study investigated the impacts of adding FeSO₄ and biochar to cattle manure and rice straw composts on functional genes controlling nitrogen loss, bacterial community, nitrification, and denitrification. Four treatments were established, including a control group (CP), and CP mixtures that included 4% biochar (TG1), 4% FeSO₄ (TG2), or 2% FeSO₄ and 2% biochar (TG3). Compared to CP, TG1-3 had a lower total nitrogen loss rate, and TG3 resulted in reduced NH₃ (52.4%) and N₂O (35.6%) emissions to mitigate nitrogen loss. The abundance of amoA and narG gene in TG3 was higher than in the other groups, and TG3 was beneficial to the growth of Proteobacteria and Actinobacteria. According to redundancy and Pearson analysis, TG3 had a positive effect on the nitrification process by increasing the abundance of amoA and narG. Thus, biochar and FeSO₄ addition mitigate nitrogen loss by regulating the nitrification processes.

Activation and tolerance of Siegesbeckia Orientalis L. rhizosphere to Cd stress

This experiment investigated the changes of rhizosphere soil microenvironment for hyperaccumulation-soil system under Cd stress in order to reveal the mechanism of hyperaccumulation and tolerance. Thus, Cd fractions, chemical compositions, and biochemical characteristics in rhizosphere soil of Siegesbeckia orientalis L. under Cd stress conditions of 0, 5, 10, 25, 50, 100, and 150 mg kg-1 were investigated through a root bag experiment, respectively. As a result, Cd induced the acidification of S. orientalis rhizosphere soil, and promoted the accumulation of dissolved organic carbon (DOC) and readily oxidizable organic carbon (ROC), which increased by 28.39% and 6.98% at the maximum compared with control. The percentage of labile Cd (acid-soluble and reducible Cd) in soil solution increased significantly (P < 0.05) from 31.87% to 64.60% and from 26.00% to 34.49%, respectively. In addition, rhizosphere microenvironment can alleviate the inhibition of Cd on soil microorganisms and enzymes compare with bulk soils. Under medium and low concentrations of Cd, the rhizosphere soil microbial biomass carbon (MBC), basal respiration, ammonification and nitrification were significantly increased (P < 0.05), and the activities of key enzymes were not significantly inhibited. This suggests that pH reduction and organic carbon (DOC and ROC) accumulation increase the bioavailability of Cd and may have contributed to Cd accumulation in S. orientalis. Moreover, microorganisms and enzymes in rhizosphere soils can enhance S. orientalis tolerance to Cd, alleviating the nutrient imbalance and toxicity caused by Cd pollution. This study revealed the changes of physicochemical and biochemical properties of rhizosphere soil under Cd stress. Rhizosphere soil acidification and organic carbon accumulation are key factors promoting Cd activation, and microorganisms and enzymes are the responses of Cd tolerance.

Response mechanisms of bacterial communities and nitrogen cycle functional genes in millet rhizosphere soil to chromium stress

Introduction

A growing amount of heavy metal contamination in soil disturbs the ecosystem's equilibrium, in which microbial populations play a key role in the nutrient cycle of soils. However, given the different sensitivity of microbial communities to different spatial and temporal scales, microbial community structure and function also have varied response mechanisms to different heavy metal contaminated habitats.

Methods

In this study, samples were taken prior to Cr stress (CK) and 6 h and 6 days after Cr stress (Cr_6h, Cr_6d) in laboratory experiments. High-throughput sequencing revealed trends in the structure and diversity of the bacterial communities, and real-time fluorescence quantitative polymerase chain reaction (qPCR) was used to analyze trends in nitrogen cycle functional genes (AOA-amoA, AOB-amoA, narG, nirK, and nifH).

Results

The findings showed that (1) the composition structure of the soil bacterial community changed considerably in Cr-stressed soils; α-diversity showed significant phase transition characteristic from stress to stability (p < 0.05). (2) With an overall rising tendency, the abundance of the nitrogen cycle functional genes (AOA-amoA and AOB-amoA) decreased considerably before increasing, and α-diversity dramatically declined (p < 0.05). (3) The redundancy analysis (RDA) and permutational multivariate analysis of variance (PERMANOVA) tests results showed that the soil physicochemical parameters were significantly correlated with the nitrogen cycle functional genes (r: 0.4195, p < 0.01). Mantel analysis showed that available nitrogen (N), available potassium (K), and available phosphorus (P) were significantly correlated with nifH (p = 0.006, 0.008, 0.004), and pH was highly significantly correlated with nifH (p = 0.026). The PLS-ME (partial least squares path model) model further demonstrated a significant direct effect of the soil physicochemical parameters on the nitrogen cycling functional genes.

Discussion

As a result, the composition and diversity of the bacterial community and the nitrogen cycle functional genes in Cr-stressed agricultural soils changed considerably. However, the influence of the soil physicochemical parameters on the functional genes involved in the nitrogen cycle was greater than that of the bacterial community. and Cr stress affects the N cycling process in soil mainly by affecting nitrification. This research has significant practical ramifications for understanding the mechanisms of microbial community homeostasis maintenance, nitrogen cycle response mechanisms, and soil remediation in heavy metal-contaminated agricultural soils.

Efficiency of Soil Amendments for Copper Removal and Brassica Juncea (L.) Growth in Wastewater Irrigated Agricultural Soil

Wastewater irrigation is becoming a massive challenge for sustainable agriculture. Particularly, copper (Cu) presence in wastewater poses a great threat to the food chain quality. Thus, scientists need to address this issue by using chemical and organic soil amendments to restore the soil ecosystem. Therefore, this study aims to examine the efficacy of sulphur, compost, acidified animal manure and sesame straw biochar for Cu immobilization, adsorption and Brassica growth in wastewater irrigated soil. The current findings presented that all the soil amendments prominently improved brassica yield and significantly minimized the Cu uptake by Brassica shoots and roots in sesame straw biochar (SB) (64.2% and 50.2%), compost (CP) (48% and 32.5%), acidified manure (AM) (37% and 23.2%) and Sulphur (SP) (16% and 3.1%) respectively relative to untreated soil. In addition, Cu bioavailability was reduced by 51%, 34%, 16.6%, and 7.4% when SB, CP, AM, and SP were incorporated in wastewater irrigated polluted soil. The Cu adsorption isotherm results also revealed that SB treated soil has great potential to increase Cu adsorption capacity by 223 mg g^- 1 over control 89 mg g^- 1. Among all the treatments, SB and CP were considered suitable candidates for the restoration of Cu polluted alkaline nature soil.

A new LDH based sustained-release carbon source filter media to achieve advanced denitrogenation of low C/N wastewater at low temperature

Advanced denitrogenation of wastewater is now facing major challenges brought by low C/N ratio and low temperature. The development of sustained-release materials with good and stable carbon release properties was an effective countermeasure. FeNi-Layered double-metal hydroxides (LDH)- sodium carboxymethyl cellulose (CMC) filter media and its potential use in heterotrophic and sulfur-based mixotrophic denitrification biological filter (DNBF), was firstly reported. It demonstrated stable structure and good carbon release performance with a mass transfer coefficient (K) of 4.40 mg·L^-1·s^-1. When the influent NO₃^--N of 50 mg/L with the C/N ratio of 3 at 10 °C, the maximum nitrogen loading rate of 0.22 kg·N/(m³·d) and effluent TN close to 5 mg/L (nitrogen removal of almost 90 %) could be achieved. The slowly released carbon source and the leached iron increased the abundance of denitrifying bacteria and functional genes, and the augmentation of Sulfuritalea and the secretion of biofilm protein stimulated by sulfur also played a synergistic role. This study provided a new potentially effective strategy to enhance advanced denitrification of wastewater of low C/N wastewater at low temperature.

Fabrication and characterization of a novel Ba2+-loaded sawdust biochar doped with iron oxide for the super-adsorption of SO42- from wastewater

Biochar is a low-cost adsorbent used in the treatment of contaminated wastewater. We investigated the potential of an Fe-impregnated, Ba²⁺-loaded biochar (Fe-(Ba-BC)) for the removal of SO₄^2- from aqueous solutions. The Ba²⁺-loaded biochar was synthesized from sawdust impregnated with iron oxide via pyrolysis at 600 °C. The porous structure of the Fe-(Ba-BC) was identified by scanning electron microscopy before sulfate was adsorbed onto the adsorbent. Functional groups were determined by energy-dispersive spectrophotometry and Raman spectrometry.. The Fe-(Ba-BC) Raman peaks before the experiment were higher than after, suggesting the precipitation of BaSO₄. The presence of BaCl₂ on the surface of the biochar was confirmed by X-ray diffraction. Batch sorption results showed that Fe-(Ba-BC) strongly adsorbed aqueous SO₄^2- with a removal efficacy of 96.7% under the optimum conditions of 0.25 M BaCl₂, a contact time of 480 min, a pH of 9 and an adsorbent dose of 2 g. The optimum condition for removal and reaction rate kinetics analysis indicated that adsorption curve fitted well with PSO, k₂ 0.00015 confirmed the removal of SO₄^2- via chemisorption. Thus, Fe-(Ba-BC) was found to be a favorable adsorbent for removing SO₄^2-.

Effects of whole-orchard recycling on nitrate leaching potential in almond production systems

Inefficient nitrogen (N) fertilization and irrigation have led to unhealthy nitrate levels in groundwater bodies of agricultural areas in California. Simultaneously, high commodity prices and drought have encouraged perennial crop growers to turnover less-productive orchards, providing opportunities to recycle tree biomass in situ and to use high-carbon (C) residues to conserve soil and water resources. Although climate change adaptation and mitigation benefits of high-C soil amendments have been shown, uncertainties remain regarding the benefits and trade-offs of this practice for N cycling and retention. We used established almond [Prunus dulcis (Mill.) D. A. Webb] orchard trials on Hanford fine sandy loam with short-term and long-term biomass recycling legacies to better understand the changes in N dynamics and retention capacity associated with this practice. In a soil column experiment, labeled N fertilizer was added and traced into various N pools, including microbial biomass and inorganic fractions in soil and leachate. Shifts in microbial communities were characterized using the abundance of key N cycling functional genes regulating nitrification and denitrification processes. Our findings showed that, in the short term, biomass recycling led to N immobilization within the orchard biomass incorporation depth zone (0-15 cm) without impacts on N leaching potential. However, this practice drastically reduced nitrate leaching potential by 52%, 10 yr after biomass incorporation without an increase in N immobilization. Although the timing of these potential benefits as a function of microbial population and C and N biogeochemical cycles still needs to be clarified, our results highlight the potential of this practice to meaningfully mitigate nitrate discharges into groundwater while conserving soil resources.

Evaluation of the synergistic effects of biochar and biogas residue on CO2 and CH4 emission, functional genes, and enzyme activity during straw composting

This study examined the effects of biochar, biogas residue, and their combined amendments on CO₂ and CH₄ emission, enzyme activity, and related functional genes during rice straw composting. Results showed that the biogas residue increased CO₂ and CH₄ emissions by 13.07 % and 74.65 %, while biochar had more obvious inhibition. Biogas residue addition enhanced functional gene abundance more than biochar. Biogas residue raised the methanogens mcrA gene by 2.5 times. Biochar improved the Acetyl-CoA synthase and β-glucosidase activities related to carbon fixation and decreased coenzyme activities related to methanogens. Biochar and biogas residue combined amendments enhanced the acsB gene abundance for CO₂ assimilation process and decreased methyl-coenzyme M reductase α subunit activity. Pearson correlation analysis indicated that organic matter was the significant variable affecting CO₂ and CH₄ emissions (P < 0.01). These results indicated biochar played significant roles in carbon loss and greenhouse emissions caused by biogas residue incorporation during composting.

Mechanism associated with the positive effect of nanocellulose on nitrogen retention in a manure composting system

Additives can play important roles in effectively inhibiting nitrogen losses during livestock manure composting due to the activities of microbes. This study investigated the effects of adding nanocellulose at 300 mg/kg, 600 mg/kg, and 900 mg/kg (NC900) on nitrogen conversion, nitrogen conversion functional genes, and related microorganisms during composting. The results showed that compared with the control, nanocellulose hindered the ammoniation reaction. In addition, NC900 promoted nitrification, interfered with the denitrification process, and reduced the abundance of the nirK gene, thereby increasing the nitrate nitrogen content and decreasing ammonia spillover. NC900 promoted nitrogen fixation by increasing the abundance of members of Rhizobiales, which play important roles in nitrogen fixation. In general, compared with the control, NC900 improved the retention of nitrogen by controlling ammonia emissions. The results obtained in this study demonstrate that nanocellulose can be applied in the treatment of organic solid waste and agricultural production.

Long-term metal pollution shifts microbial functional profiles of nitrification and denitrification in agricultural soils

The increasing contamination of heavy metals in agricultural soils and its impact on the nitrogen (N) cycle and N use efficiency have attracted considerable attention in recent years. In this study, agricultural soils neighboring the Dabaoshan copper mining area (DBS) and Qingyuan electronic-waste recycling area (QY), in Guangdong, China, were sampled to study the interaction between heavy metals and nitrification/denitrification processes, especially the related microbial functional profiles. Results showed that the contamination of heavy metals affected nitrifiers and denitrifiers differently. The potential nitrification activity was about four times lower in metal-polluted soils compared with the unpolluted ones, with a significant decrease in the abundance of amoA and nxrB (p < 0.05) in the polluted samples. On the other hand, the potential denitrification activity was more metal-resistant, which attributed to its complex species composition as shown by a slightly higher α-diversity index, and was slightly higher (p > 0.05) in the polluted samples. Among the five denitrifying genes tested, nosZ gene had the highest increase and the nirK gene the most decrease in numbers and in the polluted soils. The metal-polluted soils had fewer correlations among N functional genes based on the co-occurrence network analysis. In addition, the core taxa of the whole bacterial community changed from copiotrophic to oligotrophic bacteria in the presence of heavy metals. Mantel test indicated that heavy metals were the dominant factors determining N-related genes while the bacterial community composition was due to a combination of heavy metal presence and soil properties such as TOC, NO₂^-, and pH. It is concluded that long-term heavy metals pollution potentially affected nitrifiers and denitrifiers differently as indicated by the shift in N functional genes and the change in nitrification/denitrification processes.

Thermally enhanced bioremediation: A review of the fundamentals and applications in soil and groundwater remediation

Thermally enhanced bioremediation (TEB), a new concept proposed in recent years, explores the combination of thermal treatment and bioremediation to address the challenges of the low efficiency and long duration of bioremediation. This study presented a comprehensive review regarding the fundamentals of TEB and its applications in soil and groundwater remediation. The temperature effects on the bioremediation of contaminants were systematically reviewed. The thermal effects on the physical, chemical and biological characteristics of soil, and the corresponding changes of contaminants bioavailability and microbial metabolic activities were summarized. Specifically, the increase in temperature within a suitable range can proliferate enzymes enrichment, extracellular polysaccharides and biosurfactants production, and further enhancing bioremediation. Furthermore, a systematic evaluation of TEB applications by utilizing traditional in situ heating technologies, as well as renewable energy (e.g., stored aquifer thermal energy and solar energy), was provided. Additionally, TEB has been applied as a biological polishing technology post thermal treatment, which can be a cost-effective method to address the contaminants rebounds in groundwater remediation. However, there are still various challenges to be addressed in TEB, and future research perspectives to further improve the basic understanding and applications of TEB for the remediation of contaminated soil and groundwater are presented.

Effects of functional-membrane covering technique on nitrogen succession during aerobic composting: Metabolic pathways, functional enzymes, and functional genes

This study investigated and assessed the effect of the functional-membrane covering technique (FMCT) on nitrogen succession during aerobic composting. By comparative experiments involving high-throughput sequencing and qPCR, nitrogen metabolism (including the ko00910 pathway and functional enzyme and gene abundances) was analyzed, and the nitrogen succession mechanism was identified. The FMCT created a micro-positive pressure, improved the aerobic conditions, and increased the oxygen utilization rate and temperature. This strongly affected the nitrogen metabolism pathway and down-regulated the nitrifying and denitrifying bacteria abundances. The FMCT up-regulated the relative abundance of glutamate dehydrogenase and down-regulated the absolute abundances of AOB and nxrA. This and the high temperature increased NH₃ emissions by 13.78%-73.37%. The FMCT down-regulated the abundances of denitrifying gene groups (nirS + nirK)/nosZ and nitric oxide reductase associated with N₂O emissions and decreased N₂O emissions by 16.44%-41.15%. The results improve the understanding of the mechanism involved in nitrogen succession using the FMCT.

Silicon fertilizers, humic acid and their impact on physicochemical properties, availability and distribution of heavy metals in soil and soil aggregates

It has been confirmed that silicon (Si) fertilizer and humic acid (HA) could effectively decrease the heavy metals in soil. Nonetheless, the impact of these additives on soil aggregate characteristics was ignored. Therefore, the effects of Si fertilizer, HA, and their combinations on the physicochemical characteristics, availability of heavy metals (Cu, Cd, Pb, Zn), and fraction changes in soils and soil aggregates were investigated in this research. The results showed that Si fertilizer and HA significantly modified soil properties such as soil pH, electrical conductivity total organic carbon, water-soluble organic carbon, and nitrate‑nitrogen. HA and Si-HA (SHA) supplementation significantly decreased the availability of Cu, Cd, Pd, and Zn. Besides, there was no significant difference in physicochemical properties between soil and soil aggregates. The availability of Cu, Cd, Pd, and Zn in soil aggregates could be significantly inhibited by the addition of HA and SHA, and the content in microaggregates was greater than that in macroaggregates. After the addition of the three additives, the main fractions of heavy metals in different particle sizes were changed and eventually transformed to the residue state. These results indicated that Si fertilizer, HA, and SHA were influential in physicochemical properties and metal availability in soil aggregates. Therefore, it is of great scientific significance to study the impact of heavy metal pollution on the ecological environment in different aggregates, which will provide reference data for future sustainable management of heavy-metal polluted soils.

Calorific Value of Festuca rubra Biomass in the Phytostabilization of Soil Contaminated with Nickel, Cobalt and Cadmium Which Disrupt the Microbiological and Biochemical Properties of Soil

The choice of optimal plant species for phytoremediation and organic fertilization plays an important role in stabilizing the functions of soils contaminated with heavy metals. The influence of nickel, cobalt and cadmium on the biomass yield and calorific value of Festuca rubra, heavy metal concentrations in soil and plants and the microbiological, biochemical and physicochemical proprieties of soil were analyzed in a pot experiment. The tolerance index (TI) describing Festuca rubra’s ability to tolerate heavy metals, as well as the translocation (TF), accumulation (AF) and bioaccumulation (BF) factors of heavy metals in Festuca rubra were calculated. The experiment was conducted in two series: In soil fertilized and not fertilized with compost. Nickel and cobalt significantly inhibited the growth and development of Festuca rubra. The experiment demonstrated that this plant species can be grown on soil contaminated with heavy metals. Festuca rubra contained on average 46.05% C, 34.59% O, 5.91% H, 3.49% N, 0.19% S and 9.76% ash. Festuca rubra has a stable calorific value which is not affected by heavy metals; therefore, biomass harvested from heavy metal-polluted soil can be used for energy generation. The calorific value of Festuca rubra ranged from 15.924 to 16.790 MJ kg−1 plant d.m., and the heat of combustion from 17.696 to 18.576 MJ kg−1. It has a stable calorific value which is not affected by heavy metals, therefore biomass harvested from heavy metal-polluted soil can be used for energy generation. Festuca rubra is particularly useful for the phytostabilization of soil contaminated with cadmium and cobalt. Compost minimizes the adverse effects of heavy metal pollution on the microbiological, biochemical and physicochemical properties of soil.

Silicon-based additive on heavy metal remediation in soils: Toxicological effects, remediation techniques, and perspectives

Chemical fertilizer is gaining increasing attention and has been the center of much research which indicating complex beneficial and harmful effects. Chemical fertilizer might cause some environmental hazards to the biosphere, especially in the agricultural ecosystem. The application of silicon (Si) fertilizer in agriculture has been proved to be able to create good economic and environmental benefits. Si is the second most abundant earth crust element. Si fertilizer improves soil quality and alleviates biotic and abiotic crop stress. It is of great significance to understand the function of Si fertilizer in agricultural utilization and environmental remediation. This paper reviews the Si-based fertilizer in farmland use and summarizes prior research relevant with characterization, soil quality improvement, and pollution remediation effects. Its use in agriculture enhances plant silicon uptake, mediates plant salt and drought stress and remediates heavy metals such as Al, As, Cd, Cu, Zn and Cr. This article also summarizes the detoxification mechanism of silicon and its effects on plant physiological activity such as photosynthesis and transpiration. Fertilizer materials and crop fertilizer management were also considered. Foliar spraying is an effective method to improve crop growth and yield and reduce biotic or abiotic stress. Silicon nanoparticle material provides potential with great potential and prospects. More investigation and research are prospected to better understand how silicon impacts the environment and whether it is a beneficial additive.

Revitalization of Total Petroleum Hydrocarbon Contaminated Soil Remediated by Landfarming

Soil health deteriorates through the contamination and remediation processes, resulting in the limitation of the reuse and recycling of the remediated soils. Therefore, soil health should be recovered for the intended purposes of reuse and recycling. This study aimed to evaluate the applicability and effectiveness of several amendments to revitalize total petroleum hydrocarbon contaminated soils remediated by the landfarming process. Ten inorganic, organic, and biological amendments were investigated for their dosage and duration, and nine physicochemical, four fertility, and seven microbial (soil enzyme activity) factors were compared before and after the treatment of amendments. Finally, the extent of recovery was quantitatively estimated, and the significance of results was confirmed with statistical methods, such as simple regression and correlation analyses assisted by principal component analysis. The landfarming process is considered a somewhat environmentally friendly remediation technology to minimize the adverse effect on soil quality, but four soil properties—such as water holding capacity (WHC), exchangeable potassium (Ex. K), nitrate-nitrogen (NO₃-N), available phosphorus (Av. P), and urease—were confirmed to deteriorate through the landfarming process. The WHC was better improved by organic agents, such as peat moss, biochar, and compost. Zeolite was evaluated as the most effective material for improving Ex. K content. The vermicompost showed the highest efficacy in recovering the NO₃-N content of the remediated soil. Chlorella, vermicompost, and compost were investigated for their ability to enhance urease activity effectively. Although each additive showed different effectiveness according to different soil properties, their effect on overall soil properties should be considered for cost-effectiveness and practical implementation. Their overall effect was evaluated using statistical methods, and the results showed that compost, chlorella, and vermicompost were the most relevant amendments for rehabilitating the overall health of the remediated soil for the reuse and/or recycling of agricultural purposes. This study highlighted how to practically improve the health of remediated soils for the reuse and recycling of agricultural purposes.

Genetic Elucidation of Quorum Sensing and Cobamide Biosynthesis in Divergent Bacterial-Fungal Associations Across the Soil-Mangrove Root Interface

Plant roots in soil host a repertoire of bacteria and fungi, whose ecological interactions could improve their functions and plant performance. However, the potential microbial interactions and underlying mechanisms remain largely unknown across the soil-mangrove root interface. We herein analyzed microbial intra- and inter-domain network topologies, keystone taxa, and interaction-related genes across four compartments (non-rhizosphere, rhizosphere, episphere, and endosphere) from a soil-mangrove root continuum, using amplicon and metagenome sequencing technologies. We found that both intra- and inter-domain networks displayed notable differences in the structure and topology across four compartments. Compared to three peripheral compartments, the endosphere was a distinctive compartment harboring more dense co-occurrences with a higher average connectivity in bacterial-fungal network (2.986) than in bacterial (2.628) or fungal network (2.419), which could be related to three bacterial keystone taxa (Vibrio, Anaerolineae, and Desulfarculaceae) detected in the endosphere as they are known to intensify inter-domain associations with fungi and stimulate biofilm formation. In support of this finding, we also found that the genes involved in cell-cell communications by quorum sensing (rhlI, lasI, pqsH, and lasR) and aerobic cobamide biosynthesis (cobG, cobF, and cobA) were highly enriched in the endosphere, whereas anaerobic cobamide biosynthesis (encoded by cbiT and cbiE) was dominant in three peripheral compartments. Our results provide genetic evidence for the intensified bacterial-fungal associations of root endophytes, highlighting the critical role of the soil-root interface in structuring the microbial inter-domain associations.

Metagenomic Analyses of Plant Growth-Promoting and Carbon-Cycling Genes in Maize Rhizosphere Soils with Distinct Land-Use and Management Histories

Many studies have shown that the maize rhizosphere comprises several plant growth-promoting microbes, but there is little or no study on the effects of land-use and management histories on microbial functional gene diversity in the maize rhizosphere soils in Africa. Analyzing microbial genes in the rhizosphere of plants, especially those associated with plant growth promotion and carbon cycling, is important for improving soil fertility and crop productivity. Here, we provide a comparative analysis of microbial genes present in the rhizosphere samples of two maize fields with different agricultural histories using shotgun metagenomics. Genes involved in the nutrient mobilization, including nifA, fixJ, norB, pstA, kefA and B, and ktrB were significantly more abundant (α = 0.05) in former grassland (F1) rhizosphere soils. Among the carbon-cycling genes, the abundance of 12 genes, including all those involved in the degradation of methane were more significant (α = 0.05) in the F1 soils, whereas only five genes were significantly more abundant in the F2 soils. α-diversity indices were different across the samples and significant differences were observed in the β diversity of plant growth-promoting and carbon-cycling genes between the fields (ANOSIM, p = 0.01 and R = 0.52). Nitrate-nitrogen (N-NO₃) was the most influential physicochemical parameter (p = 0.05 and contribution = 31.3%) that affected the distribution of the functional genes across the samples. The results indicate that land-use and management histories impact the composition and diversity of plant growth-promoting and carbon-cycling genes in the plant rhizosphere. The study widens our understanding of the effects of anthropogenic activities on plant health and major biogeochemical processes in soils.

Synergistic action of silicon nanoparticles and indole acetic acid in alleviation of chromium (CrVI) toxicity in Oryza sativa seedlings

The present study investigates ameliorative effect of silicon nanoparticles (SiNPs) and indole acetic acid (IAA) alone and in combination against hexavalent chromium (Cr^VI) toxicity in rice seedlings. The results of the study revealed protective effects of SiNPs and IAA against Cr^VI toxicity. The 100μM of Cr^VI imposed toxic effects in rice seedlings at morphological, physiological and biochemical levels which coincided with increased level of intracellular Cr^VI and declined level of endogenous nitric oxide (NO). The Cr^VI enhanced levels of superoxide radicals (SOR) (59.51% and 50.1% in shoot and root, respectively) and H₂O₂ (19.5% and 23.69% in shoot and root, respectively). However, when SiNPs and IAA were applied to plants under Cr^VI stress, they enhanced tolerance and defence mechanisms as manifested in terms of increased biomass, endogenous NO, photosynthetic pigments, and antioxidants level (ascorbate-glutathione cycle). It was also noticed that Cr^VI arrested cell cycle at G2/M phase whereas growth was restored as compared to control when SiNPs and IAA were supplemented. Thus, the hypothesis that combined application of SiNPs and IAA will be effective in alleviating Cr^VI toxicity is validated from the results of this study. Moreover, in SiNPs and IAA-mediated mitigation of Cr^VI toxicity, endogenous NO has a positive role. The importance of the study will be that the combination of SiNPs and IAA can be utilized against heavy metal stress and even when supplied alone, they will enhance the crop productivity parameters with and without stress conditions.

Simultaneously autotrophic denitrification and organics degradation in low-strength coal gasification wastewater (LSCGW) treatment via microelectrolysis-triggered Fe(II)/Fe(III) cycle

The autotrophic iron-depended denitrification (AIDD), triggered by microelectrolysis, was established in the microelectrolysis-assistant up-flow anaerobic sludge blanket (MEA-UASB) with the purpose of low-strength coal gasification wastewater (LSCGW) treatment while control UASB operated in parallel. The results revealed that chemical oxygen demand (COD) removal efficiency and total nitrogen (TN) removal load at optimum current (2.5 A/m³) in MEA-UASB (83.2 ± 2.6% and 0.220 ± 0.010 kg N/m³·d) were 1.42-fold and 1.57-fold higher than those (58.5 ± 2.1% and 0.139 ± 0.011 kg N/m³·d) in UASB, verifying that AIDD and following dissimilatory iron reduction (DIR) process could offer the novel pathway to solve the electron donor-deficient and traditionally denitrification-infeasible problems. High-throughput 16S rRNA gene pyrosequencing shown that iron-oxidizing denitrifiers (Thiobacillus and Acidovorax species) and iron reducing bacteria (Geothrix and Ignavibacterium speices), acted as microbial iron cycle of contributors, were specially enriched at optimum operating condition. Additionally, the activities of microbial electron transfer chain, electron transporters (complex I, II, III and cytochrome c) and abundance of genes encoding important enzymes (narG, nirK/S, norB and nosZ) were remarkably promoted, suggesting that electron transport and consumption capacities were stimulated during denitrification process. This study could shed light on better understanding about microelectrolysis-triggered AIDD for treatment of refractory LSCGW and further widen its application potential in the future.

Characteristics and Influencing Factors of Microbial Community in Heavy Metal Contaminated Soil under Silicon Fertilizer and Biochar Remediation

Silicon fertilizer and biochar have been widely used to remediate soil contaminated by heavy metals. The effects and mechanism of silicon fertilizer and biochar addition on the heavy metal availability, soil biological properties, and microbial community characteristics need further study in soils contaminated by heavy metals. Therefore, this research determined how silicon fertilizer, biochar, and their combined using affected microbial communities related with nitrogen and phosphorus cycling. The abundance and composition of the microbial community were evaluated by quantitative PCR and phospholipid fatty acid analysis, respectively. Results showed that silicon fertilizer and biochar addition significantly changed soil properties, including pH, total organic carbon, ammonium, nitrate. The Cd and Zn speciation were significantly reduced by silicon fertilizer, biochar, and their integrated application. Microbial community abundance and structure were also significantly changed. Principal component analysis shows that the difference in soil microbial community structure is the most obvious under the combined addition of biochar, silicon fertilizer and biochar. In addition, the results of fluorescence quantitative PCR showed that with biological addition, the number of soil bacteria was significantly reduced. This study reveals the influence of silicon fertilizer and biochar on bacterial and fungal communities in heavy metal soils and the effect of soil heavy metal availability.

How different are the arsenic fractions inhibit alkaline phosphatases on aggregates scale?

Arsenate [As(V)], in general, is associated with various aggregates and exists as different species in soil, which in turn influences its toxicity and potential contamination. Previous studies have demonstrated the usefulness of alkaline phosphatases (ALP) to evaluate As(V) pollution. However, the effect of different arsenic fractions on ALP among soil aggregates is still unclear. Thus, the distribution of As fractions and ALP kinetics was determined in four-month As-aged paddy soil aggregates. Results revealed the two major fractions of As in aggregates were humic-bound and Fe and Mn oxides-bound [both around 30% under 800 mg kg^-1 of As(V)]. Besides, it was observed that available soil phosphorus could positively affect the relative content of water-soluble, exchangeable and carbonate-bound arsenic. In the kinetics experiment, both the Michaelis-Menten constant (K_m) and maximum reaction velocity (V_max) of ALP increased with increasing As(V) concentration under four months ageing for each size aggregate. Multiple linear stepwise regression analysis between k_cat and the relative content of arsenic fraction indicated that carbonate-bound arsenic is the main fraction that inhibited the k_cat for macroaggregates (> 0.25 mm size). For soil aggregates of 0.1-0.25 mm size, k_cat increased with an increase in arsenic residual fraction. As for aggregates <0.1 mm size, Fe and Mn oxide-bound fraction is the main fraction that inhibited the k_cat. Overall, this study suggests carbonate-bound and Fe and Mn oxide-bound arsenic fractions could decrease the ALP activities via a decrease in the catalytic efficiency in macroaggregates and <0.1 mm size aggregates, respectively. Besides, available phosphorus should be considered as the main factor when assessing As biotoxicity and mobility.

Microbially-driven sulfur cycling microbial communities in different mangrove sediments

Microbially-driven sulfur cycling is a vital biogeochemical process in the sulfur-rich mangrove ecosystem. It is critical to evaluate the potential impact of sulfur transformation in mangrove ecosystems. To reveal the diversity, composition, and structure of sulfur-oxidizing bacteria (SOB) and sulfate-reducing bacteria (SRB) and underlying mechanisms, we analyzed the physicochemical properties and sediment microbial communities from an introduced mangrove species (Sonneratia apetala), a native mangrove species (Kandelia obovata) and the mudflat in Hanjiang River Estuary in Guangdong (23.27°N, 116.52°E), China. The results indicated that SOB was dominated by autotrophic Thiohalophilus and chemoautotrophy Chromatium in S. apetala and K. obovata, respectively, while Desulfatibacillum was the dominant genus of SRB in K. obovata sediments. Also, the redundancy analysis indicated that temperature, redox potential (ORP), and SO₄^2- were the significant factors influencing the sulfur cycling microbial communities with elemental sulfur (ES) as the key factor driver for SOB and total carbon (TC) for SRB in mangrove sediments. Additionally, the morphological transformation of ES, acid volatile sulfide (AVS) and SO₄^2- explained the variation of sulfur cycling microbial communities under sulfur-rich conditions, and we found mangrove species-specific dominant Thiohalobacter, Chromatium and Desulfatibacillum, which could well use ES and SO₄^2-, thus promoting the sulfur cycling in mangrove sediments. Meanwhile, the change of nutrient substances (TN, TC) explained why SOB were more susceptible to environmental changes than SRB. Sulfate reducing bacteria produces sulfide in anoxic sediments at depth that then migrate upward, toward fewer reducing conditions, where it's oxidized by sulfur oxidizing bacteria. This study indicates the high ability of SOB and SRB in ES, SO₄^2-_,S₂^- and S^2- generation and transformation in sulfur-rich mangrove ecosystems, and provides novel insights into sulfur cycling in other wetland ecosystems from a microbial perspective.

Responses of ammonia-oxidizing microorganisms to biochar and compost amendments of heavy metals-polluted soil

Heavy metal pollution affects soil ecological function. Biochar and compost can effectively remediate heavy metals and increase soil nutrients. The effects and mechanisms of biochar and compost amendments on soil nitrogen cycle function in heavy-metal contaminated soils are not fully understood. This study examined how biochar, compost, and their integrated use affected ammonia-oxidizing microorganisms in heavy metal polluted soil. Quantitative PCR was used to determine the abundance of ammonia-oxidizing archaea (AOA) and bacteria (AOB). Ammonia monooxygenase (AMO) activity was evaluated by the enzyme-linked immunosorbent assay. Results showed that compost rather than biochar improved nitrogen conversion in soil. Biochar, compost, or their integrated application significantly reduced the effective Zn and Cd speciation. Adding compost obviously increased As and Cu effective speciation, bacterial 16S rRNA abundance, and AMO activity. AOB, stimulated by compost addition, was significantly more abundant than AOA throughout remediation. Correlation analysis showed that AOB abundance positively correlated with NO₃^--N (r = 0.830, P < 0.01), and that AMO activity had significant correlation with EC (r = -0.908, P < 0.01) and water-soluble carbon (r = -0.868, P < 0.01). Those seem to be the most vital factors affecting AOB community and their function in heavy metal-polluted soil remediated by biochar and compost.

Compost mixed fruits and vegetable waste biochar with ACC deaminase rhizobacteria can minimize lead stress in mint plants

High lead (Pb) concentration in soils is becoming a severe threat to human health. It also deteriorates plants, growth, yield and quality of food. Although the use of plant growth-promoting rhizobacteria (PGPR), biochar and compost can be effective environment-friendly amendments for decreasing Pb stress in crop plants, the impacts of their simultaneous co-application has not been well documented. Thus current study was carried, was conducted to investigate the role of rhizobacteria and compost mixed biochar (CB) under Pb stress on selected soil properties and agronomic parameters in mint (Mentha piperita L.) plants. To this end, six treatments were studied: Alcaligenes faecalis, Bacillus amyloliquefaciens, CB, PGPR1 + CB, PGPR2 + CB and control. Results showed that the application A. faecalis + CB significantly decreased soil pH and EC over control. However, OM, nitrogen, phosphorus and potassium concentration were significantly improved in the soil where A. faecalis + CB was applied over control. The A. faecalis + CB treatment significantly improved mint plant root dry weight (58%), leaves dry weight (32%), chlorophyll (37%), and N (46%), P (39%) and K (63%) leave concentration, while also decreasing the leaves Pb uptake by 13.5% when compared to the unamended control. In conclusion, A. faecalis + CB has a greater potential to improve overall soil quality, fertility and mint plant productivity under high Pb soil concentration compared to the sole application of CB and A. faecalis.

Application of Fourier transform ion cyclotron resonance mass spectrometry in deciphering molecular composition of soil organic matter: A review

Swiftly deciphering soil organic matter (SOM) composition is critical for research on soil degradation and restoration. Recent advances in analytical techniques (e.g., optical methods and mass spectrometry) have expanded our understanding of the composition, origin, and evolution of SOM. In particular, the use of Fourier transform ion cyclotron resonance mass spectrometers (FTICR-MS) makes it possible to interpret SOM compositions at the molecular level. In this review, we discuss extraction, enrichment, and purification methods for SOM using FTICR-MS analysis; summarize ionization techniques, FTICR-MS mechanisms, data analysis methods, and molecular compositions of SOM in different environments (providing new insights into its origin and evolution); and discuss factors affecting its molecular diversity. Our results show that digenesis, combustion, pyrolysis, and biological metabolisms jointly contribute to the molecular diversity of SOM molecules. The SOM thus formed can further undergo photodegradation during transportation from land to fresh water (and subsequently oceans), resulting in the formation of dissolved organic matter (DOM). Better understanding the molecular features of DOM therefore accelerates our understanding of SOM evolution. In addition, we assess the degradation potential of SOM in different environments to better inform soil remediation methods. Finally, we discuss the merits and drawbacks of applying FTICR-MS on the analysis of SOM molecules, along with existing gaps in knowledge, challenges, and new opportunities for research in FTICR-MS applications and SOM identification.

Watering techniques and zero-valent iron biochar pH effects on As and Cd concentrations in rice rhizosphere soils, tissues and yield

Zero-valent iron amended biochar (ZVIB) has been proposed as a promising material in immobilizing heavy metals in paddy fields. In this study, the impacts of pH of ZVIB (pH 6.3 and pH 9.7) and watering management techniques (watering amount in the order of CON (control, 5/72)>3/72>1-3/72>3/100>1/72, with 5/72, for example, representing irrigation given to 5 cm above soil surface in 72 hr regular interval) on As and Cd bioavailability for rice and its grain yield (Yield_BR) were investigated in a pot experiment. Brown rice As (As_BR) content was irrelative to the watering treatments, while significantly decreased (>50%) with the addition of both ZVIB materials. The diminutions of brown rice Cd (Cd_BR) content as well as the Yield_BR were highly dependent on both the soil amendment materials' pH and watering amount. Among all the watering treatments, 3/72 treatment (15% less irrigation water than the CON) with ZVIB 6.3 amendment was the optimum fit for simultaneous reduction of As_BR (50%) and Cd_BR contents (19%) as well as for significant increment (12%) of the Yield_BR. Although high pH (9.7) ZVIB application could also efficiently decrease As and Cd contents in brown rice, it might risk grain yield lost if appropriate (e.g. 3/72 in our study) watering management technique was not chosen. Therefore, ZVIB would be an environmentally friendly option as an amendment material with proper selection of watering management technique to utilize As and Cd co-contaminated arable soils safely for paddy cultivation.

Dynamic evolution of humic acids during anaerobic digestion: Exploring an effective auxiliary agent for heavy metal remediation

Information on the dynamic evolution of humic acid (HA) from anaerobic digestate and the potential of HA serving as an effective agent for remedying heavy metals is rather scarce. This study monitored the evolution of the structure and functional groups and metal-binding abilities of HA during chicken manure and corn stover anaerobic digestion (AD) processes. Higher increases in aromatic (41-66%) and oxygen-containing functional groups (37-45%) were observed in HA from the AD of corn stover, resulting in higher metal-binding abilities for Cu(II), Co(II), and Ni(II) than those of chicken manure AD. Moreover, HA extracted from fast (before day 12 for chicken manure and day 16 for corn stover), and slow (day 40) methane production stages performed different complexation capacities for the heavy metals. These results reveal the mechanisms of HA and heavy metal interactions, and confirm the potential of HA extracted from AD process for the remediation of heavy metals.

Diversity, function and assembly of mangrove root-associated microbial communities at a continuous fine-scale

Mangrove roots harbor a repertoire of microbial taxa that contribute to important ecological functions in mangrove ecosystems. However, the diversity, function, and assembly of mangrove root-associated microbial communities along a continuous fine-scale niche remain elusive. Here, we applied amplicon and metagenome sequencing to investigate the bacterial and fungal communities among four compartments (nonrhizosphere, rhizosphere, episphere, and endosphere) of mangrove roots. We found different distribution patterns for both bacterial and fungal communities in all four root compartments, which could be largely due to niche differentiation along the root compartments and exudation effects of mangrove roots. The functional pattern for bacterial and fungal communities was also divergent within the compartments. The endosphere harbored more genes involved in carbohydrate metabolism, lipid transport, and methane production, and fewer genes were found to be involved in sulfur reduction compared to other compartments. The dynamics of root-associated microbial communities revealed that 56-74% of endosphere bacterial taxa were derived from nonrhizosphere, whereas no fungal OTUs of nonrhizosphere were detected in the endosphere. This indicates that roots may play a more strictly selective role in the assembly of the fungal community compared to the endosphere bacterial community, which is consistent with the projections established in an amplification-selection model. This study reveals the divergence in the diversity and function of root-associated microbial communities along a continuous fine-scale niche, thereby highlighting a strictly selective role of soil-root interfaces in shaping the fungal community structure in the mangrove root systems.

Characteristics of denitrification genes and relevant enzyme activities in heavy-metal polluted soils remediated by biochar and compost

Denitrification is an important process affecting nitrogen dynamics in soils. In this study, abundances of denitrification genes (narG, nirK, nirS, and nosZ) and activities of nitrite reductase (S-NiR), nitrate reductase (S-NR) were measured in heavy-metal polluted soils with different amendments of biochar and compost. The relationships between physical-chemical parameters, denitrification gene abundance, and enzyme activity were analyzed by Pearson correlation method. Results showed that compost addition significantly increased the abundances of functional genes (nirS, nosZ, narG), and the abundances of nirK and nirS might be sensitive to compost and biochar addition. Compost addition and its combination with biochar significantly decreased the S-NiR enzyme activity and stimulated the S-NR enzyme activity. Negative relationships were obtained between S-NiR activity and electric conductivity (EC), water soluble carbon (WSC), nitrate, ammonium, nirK, narG gene abundances. While S-NR activity significantly positively correlated with soil EC, WSC and nirK gene abundance. Biochar and compost amendments can alter soil nitrogen cycling by changing denitrifying functional gene and relevant enzyme activities in soils polluted by heavy metals.

Concentration of trace elements in forest soil affected by former timber depot

Certain parts of global forests show elevated concentrations of trace elements as a result of industry processes, places such as wood depots and plant protection products, which together degrade the forest environment. This paper examines a timber depot that used wood preservatives in World War II located in the Warcino Forest Inspectorate (Poland). It presents monitory findings on the degree to which the upper soil layer in the depot area has been contaminated by wood preservatives. Within two forest divisions, a network of soil extraction points was established, distinguished into three separate categories that demarcate the degrees of vegetation coverage and growth of the common pine. These were Area A (area with a pine stand that is several dozen years-old), Area B (areas with a pine stand that is approximately a dozen years-old) and Area C (areas without a pine stand). The Cu concentration in the surface categories was respectively 141.03/187.54/834.43 mg·kg^-1. Above 600% in Cu concentration was noted in category C in comparison to category A. It was found that the content of most elements (B, Cd, Co, Cr, Fe, Mn, Mo, Ni, Pb, Zn) did not exceed the permissible values according to the Regulation of the Minister of the Environment on soil quality standards; however, in the case of Cu, the limit values established for forest and agricultural soils were exceeded, with the highest Cu contents found in the 'C' category. The results obtained confirm that the wood protection chemicals, such as copper sulphate, affected the long-term pollution of forest soils.

Editorial: New Research on Soil Degradation and Restoration

The Virtual Special Issue (VSI) "New Research on Soil Degradation and Restoration" was proposed by the Guest-Editors (the authors of this editorial piece) to Journal of Environmental Management taking into account the following aspects: (a) Firstly, soil degradation is a main issue all over the world; (b) Secondly, physical, chemical and biological degradation of soil environments need detailed research, also going deeper in some new aspects poorly covered up to now; and (c) Similarly, new quality research on restoration of degraded soils, dumping sites, different areas affected by mining activities, and so on, would be clearly useful in order to prevent and/or solve critical environmental hazards. As a result, 110 manuscripts were submitted to the VSI by authors from around the world, and near 50 high quality works were finally published. The Guest-Editors of the VSI consider that the papers published will be of great interest for researchers working in this field, as well as for the overall community, as they include aspects clearly relevant at a global level.

Effects of soil particle size on the adsorption, distribution, and migration behaviors of heavy metal(loid)s in soil: a review

In recent years, toxic pollution from heavy metal(loid)s in soil has become a severe environmental problem worldwide. The migration and transformation of heavy metal(loid)s in soil have become hot topics in the field of environmental research. Soil particle size plays an important role in influencing the environmental behavior of heavy metal(loid)s in soil. This review collates and synthesizes the research on the adsorption, distribution, and migration of heavy metal(loid)s in soil particles. There is no unified method for soil particle separation, since the purposes of different studies are different. Regardless of adsorption or distribution characteristics, fine soil particles generally exhibit a higher capacity to combine heavy metal(loid)s; however, certain studies have also observed a contrary phenomenon, according to which heavy metal(loid)s were more enriched in coarser particles. The adsorption and distribution of heavy metal(loid)s in soil particles were essentially determined by the physicochemical properties of the soil particles. Land use obviously affected the distribution of heavy metal(loid)s in the soil particles. Organic matter had an important influence on the distribution and availability of heavy metal(loid)s in agricultural and forest soils, while for urban soils and sediments, clay minerals or metal (hydr)oxides may play the dominant role. Preferential surface migration of fine particles during erosion processes did not always lead to the enrichment of heavy metal(loid)s in the lost soil. Further research should be conducted to explore the relationships among the soil aggregates, organic matter, heavy metal(loid)s, and soil microorganisms; the association between the distribution and availability of heavy metal(loid)s and the properties of soil particles; and the migration patterns of heavy metal(loid)s in soil particles at different scales.

Potential role of compost mixed biochar with rhizobacteria in mitigating lead toxicity in spinach

Consumption of heavy metals, especially lead (Pb) contaminated food is a serious threat to human health. Higher Pb uptake by the plant affects the quality, growth and yield of crops. However, inoculation of plant growth-promoting rhizobacteria (PGPR) along with a mixture of organic amendments and biochar could be an effective way to overcome the problem of Pb toxicity. That’s why current pot experiment was conducted to investigate the effect of compost mixed biochar (CB) and ACC deaminase producing PGPR on growth and yield of spinach plants under artificially induced Pb toxicity. Six different treatments i.e., control, Alcaligenes faecalis (PGPR1), Bacillus amyloliquefaciens (PGPR2), compost + biochar (CB), PGPR1 + CB and PGPR2 + CB were applied under 250 mg Pb kg^-1 soil. Results showed that inoculation of PGPRs (Alcaligenes faecalis and Bacillus amyloliquefaciens) alone and along with CB significantly enhanced root fresh (47%) and dry weight (31%), potassium concentration (11%) in the spinach plant. Whereas, CB + Bacillus amyloliquefaciens significantly decreased (43%) the concentration of Pb in the spinach root over control. In conclusion, CB + Bacillus amyloliquefaciens has the potential to mitigate the Pb induced toxicity in the spinach. The obtained result can be further used in the planning and execution of rhizobacteria and compost mixed biochar-based soil amendment.

Bioelectrochemical remediation of Cr(VI)/Cd(II)-contaminated soil in bipolar membrane microbial fuel cells

Heavy-metal contaminated soils post great environmental and health concerns. In this study, Cr and Cd which are frequently observed in contaminated soils, were selected as representatives of hazardous heavy metals because of their different redox potentials and electric charges. Cr(VI)-, Cd(II)-, Cr(VI)/Cd(II)-contaminated soils were remediated in two-chamber air-cathode MFCs, in order to investigate the remediation of soil contaminated by single heavy metal and mixed heavy metals. Four ion exchange membranes (IEMs) were first evaluated to find out that bipolar membrane (BPM) was able to well maintain pH in both anolyte and catholyte, which was beneficial to support biological metabolism and heavy metal removal. It was also found that heavy metal ions (Cr, Cd or Cr/Cd) could migrate toward the cathode forming a concentration gradient under the weak electric field. The interaction between negatively charged Cr and positively charged Cd had no major effect to hinder each other on the migration, suggesting that the reduction reaction and electric field should be the main motivation for metal ion migration. The remediation performance of mixed heavy metal contaminated soil was superior to that of single heavy metal contaminated soil, for the possible reason of smaller internal resistance under mixed heavy metal condition.

Influence of the application of Fe-Mn-La ternary oxide-biochar composites on the properties of arsenic-polluted paddy soil

Arsenic exists ubiquitously in the soil and has been proved to be of significant hazard to human health upon transmission through food chain. Herein, we determined the effects of Fe-Mn-La ternary oxide-biochar composites (FMLBCs) on arsenic (As) fractionation, soil enzyme activities, and microbial communities in arsenic-polluted soils. The results demonstrated that the proportion of non-swappable As fractions reduced and that of the exchangeable As fractions increased with the addition of FMLBCs. Furthermore, the addition of FMLBCs significantly increased the catalase (CAT) activity (P < 0.05), and an increase of 69.2-268% was observed when 2 wt% FMLBCs were added. Supplementation with biochar or FMLBCs increased the relative abundance of Proteobacteria and Acidobacteria and decreased the relative abundance of Firmicutes; moreover, the effect was more obvious as the addition amount of biochar or FMLBCs increased. In addition, the FMLBCs, except for FMLBC3, increased the content of available phosphorus. Moreover, amendments of FMLBCs led to an increase in the available potassium content by an average of 212%, 113%, and 62.1% in highly polluted soil. Therefore, the FMLBCs affected the physical and chemical properties of soil in different manners. The results suggested that the addition of FMLBCs changed the distribution and increased the immobilization of As in the soil; this could indirectly reduce the risk of the transport of As to rice. The amendment mechanism of FMLBCs may include changes to the physicochemical soil properties and consequently, the soil enzyme activities are affected, which can influence the microbial communities in soils.

Comparison of Cu salts and commercial Cu based fungicides on toxicity towards microorganisms in soil

Microbial responses to Cu pollution as a function of Cu sources (Cu salts and commercial Cu fungicides) were assessed in a soil using basal soil respiration, and bacterial and fungal community growth, as endpoints. The soil was amended with different concentrations (0-32 mmol Cu kg^-1) of Cu nitrate, Cu sulfate, Bordeaux mixture and 3 types of Cu oxychloride. Cu salts decreased soil pH, while this was not found with the other Cu sources. This difference in soil pH effects caused differences in the respiration, bacterial growth and fungal growth response. Basal soil respiration was negatively affected by Cu addition when the soil was spiked with Cu salts, but almost unaffected by commercial Cu fungicides. Bacterial growth was significantly and negatively affected by Cu addition for all the Cu sources, but Cu toxicity was higher for Cu salts than for commercial Cu fungicides. Fungal growth response was also different for Cu salts and commercial Cu fungicides, but only in the long-term. High Cu amendments using Cu salts stimulated fungal growth, whereas for commercial Cu fungicides, these concentrations inhibited fungal growth. Thus, the use of products similar to those used in commercial fungicides is a recommended practice for Cu risk assessments in soil.