Biochar significantly alters rhizobacterial communities and reduces Cd concentration in rice grains grown on Cd-contaminated soils

Soil Cd bioavailability response characteristics to microbes in paddy fields with co-incorporation of milk vetch, rice straw and amendments

Excessive heavy metals in soils can threaten food security and soil health. New practical technology is urgently needed to remediate cadmium (Cd) contaminated paddies in many parts of the world. Chinese milk vetch (M), rice straw (R), and soil amendments can reduce Cd activity in soil; however, the mechanism underlying this reduction is not well understood. This study explored the impact of co-incorporation of milk vetch, rice straw, and either lime (L), sesbania biochar (B), or sepiolite on soil Cd bioavailability through field experiments. The results indicated that the rice grain Cd concentrations in soil treated with milk vetch + rice straw + fertilizer (MRF, 16.6 %), milk vetch + rice straw + fertilizer + sesbania biochar (MRFB, 50.1 %), and milk vetch + rice straw + fertilizer + lime (MRFL, 48.3 %) were significantly lower than those in soil treated with fertilizer (F). The acid-soluble Cd concentrations influenced rice grain Cd uptake and were 33.9 % and 47.5 % lower for the MRFB and MRFL treatments, respectively, than for F alone. A decrease in acid-soluble Cd (AciCd) was accompanied by a decrease in Eh and increases in pH, Fe2+, cation exchange capacity, and dissolved organic carbon. The MRFB treatment promoted iron plaque (IP) formation on the rice root surface. The relative abundances of Desulfobacterota and Verrucomicrobiota were higher for the MRFB treatment than for the other treatments. A partial least squares path model confirmed that Aci-Cd and low-crystalline IP (IP-Feh) influenced the rice grain Cd concentration.

The effect of different amendments on Cd availability and bacterial community after three-year consecutive application in Cd-contaminated paddy soils

In situ immobilization is a widely used measure for passivating Cd-contaminated soils. Amendments need to be continuously applied to achieve stable remediation effects. However, few studies have evaluated the impact of consecutive application of amendments on soil health and the microecological environment. A field experiment was conducted in a Cd-contaminated paddy (available Cd concentration 0.40 mg kg-1) on the Chengdu Plain to investigate the changes in soil Cd availability and response characteristics of soil bacterial communities after consecutive application of rice straw biochar (SW), fly ash (FM) and marble powder (YH) amendments from 2018 to 2020. Compared with control treatment without amendments (CK), soil pH increased by 0.6, 0.5 and 1.5 under SW, FM and YH amendments, respectively, and the soil available Cd concentration decreased by 10.71%, 21.42% and 25.00%, respectively. The Cd concentration in rice grain was less than 0.2 mg kg-1 under YH amendment, which was within the Chinese Contaminant Limit in Food of National Food Safety Standards (GB2762-2022) in the second and third years. The three amendments had different effects on the transformation of Cd fractions in soil, which may be relevant to the specific bacterial communities shaped under different treatments. The proportion of Fe-Mn oxide-bound fraction Cd (OX-Cd) increased by 11% under YH treatment, which may be due to the promotion of Fe(III) and Cd binding by some enriched iron-oxidizing bacteria, such as Lysobacter, uncultured_Pelobacter sp. and Sulfurifusis. Candidatus_Tenderia and Sideroxydans were enriched under SW and FM amendments, respectively, and were likely beneficial for reducing Cd availability in soil through Cd immobilization. These results revealed the significance of the bacterial community in soil Cd immobilization after consecutive application of amendments and highlighted the potential of applying YH amendment to ensure the safe production of rice in Cd-contaminated soil.

Biochar dose-dependent impacts on soil bacterial and fungal diversity across the globe

Biochar, a widely used material for soil amendment, has been found to offer numerous advantages in improving soil properties and the habitats for soil microorganisms. However, there is still a lack of global perspectives on the influence of various levels of biochar addition on soil microbial diversity and primary components. Thus, in our study, we performed a global meta-analysis of studies to determine how different doses of biochar affect soil total carbon (C), nitrogen (N), pH, alpha- and beta-diversity, and the major phyla of both bacterial and fungal communities. Our results revealed that biochar significantly increased soil pH by 4 %, soil total C and N by 68 % and 22 %, respectively, in which the positive effects increased with biochar doses. Moreover, biochar promoted soil bacterial richness and evenness by 3-8 % at the biochar concentrations of 1-5 % (w/w), while dramatically shifting bacterial beta-diversity at the doses of >2 % (w/w). Specifically, biochar exhibited significantly positive effects on bacterial phyla of Acidobacteria, Bacteroidetes, Gemmatimonadetes, and Proteobacteria, especially Deltaproteobacteria and Gammaproteobacteria, by 4-10 % depending on the concentrations. On the contrary, the bacterial phylum of Verrucomicrobia and fungal phylum of Basidiomycota showed significant negative responses to biochar by -8 % and -24 %, respectively. Therefore, our meta-analysis provides theoretical support for the development of optimized agricultural management practices by emphasizing biochar application dosing.

Biochar reduces the cadmium content of Panax quinquefolium L. by improving rhizosphere microecology

Cadmium (Cd) accumulation in American ginseng (Panax quinquefolium L.) can negatively impact its yield and safety. Our previous study found that biochar could reduce cadmium content of P. quinquefolius, however, the mechanism was yet to be elucidated. In the present study, we tested four treatments in order to reveal the mechanism by which this phenomenon occurs: control, Cd, Cd + biochar and biochar. The results showed that the following responses were induced by the addition of biochar under Cd stress. Firstly, the soil physicochemical properties were improved, this is especially true for the soil pH value and soil organic matter content, which were increased by 20.42 % and 15.57 %, respectively. Secondly, the relative abundances of several beneficial microorganism phyla; such as Proteobacteria, Bacteroidota and Actinobacteria; were increased by 10.69 %, 20.11 % and 60.86 %, respectively. Thirdly, treatment with biochar reduced the Cd content by increasing cadmium-chelated metabolites within the soil (e.g., naringenin, caffeic acid, and valine) and increasing detoxification substances in plants (e.g., malic acid, flavonoids, and fumaric acid). Changes in these metabolites were significantly correlated with rhizosphere microecology. In summary, biochar treatment reduced the Cd content in seedlings by improving the soil properties, rhizosphere community, soil metabolites, and plant metabolites.

Quantification of the effect of biochar application on heavy metals in paddy systems: Impact, mechanisms and future prospects

Biochar (BC) has shown great potential in remediating heavy metal(loid)s (HMs) contamination in paddy fields. Variation in feedstock sources, pyrolysis temperatures, modification methods, and application rates of BC can result in great changes in its effects on HM bioavailability and bioaccumulation in soil-rice systems and remediation mechanisms. Meanwhile, there is a lack of application guidelines for BC with specific properties and application rates when targeting rice fields contaminated with certain HMs. To elucidate this topic, this review focuses on i) the effects of feedstock type, pyrolysis temperature, and modification method on the properties of BC; ii) the changes in bioavailability and bioaccumulation of HMs in soil-rice systems applying BC with different feedstocks, pyrolysis temperatures, modification methods, and application rates; and iii) exploration of potential remediation mechanisms for applying BC to reduce the mobility and bioaccumulation of HMs in rice field systems. In general, the application of Fe/Mn modified organic waste (OW) derived BC for mid-temperature pyrolysis is still a well-optimized choice for the remediation of HM contamination in rice fields. From the viewpoint of remediation efficiency, the application rate of BC should be appropriately increased to immobilize Cd, Pb, and Cu in rice paddies, while the application rate of BC for immobilizing As should be <2.0 % (w/w). The mechanism of remediation of HM-contaminated rice fields by applying BC is mainly the direct adsorption of HMs by BC in soil pore water and the mediation of soil microenvironmental changes. In addition, the application of Fe/Mn modified BC induced the formation of iron plaque (IP) on the root surface of rice, which reduced the uptake of HM by the plant. Finally, this paper describes the prospects and challenges for the extension of various BCs for the remediation of HM contamination in paddy fields and makes some suggestions for future development.

Multitask Deep Learning Enabling a Synergy for Cadmium and Methane Mitigation with Biochar Amendments in Paddy Soils

Biochar has demonstrated significant promise in addressing heavy metal contamination and methane (CH4) emissions in paddy soils; however, achieving a synergy between these two goals is challenging due to various variables, including the characteristics of biochar and soil properties that influence biochar's performance. Here, we successfully developed an interpretable multitask deep learning (MTDL) model by employing a tensor tracking paradigm to facilitate parameter sharing between two separate data sets, enabling a synergy between Cd and CH4 mitigation with biochar amendments. The characteristics of biochar contribute similar weightings of 67.9% and 62.5% to Cd and CH4 mitigation, respectively, but their relative importance in determining biochar's performance varies significantly. Notably, this MTDL model excels in custom-tailoring biochar to synergistically mitigate Cd and CH4 in paddy soils across a wide geographic range, surpassing traditional machine learning models. Our findings deepen our understanding of the interactive effects of Cd and CH4 mitigation with biochar amendments in paddy soils, and they also potentially extend the application of artificial intelligence in sustainable environmental remediation, especially when dealing with multiple objectives.

Mitigation of the mobilization and accumulation of toxic metal(loid)s in ryegrass using sodium sulfide

Remediation of soils contaminated with toxic metal(loid)s (TMs) and mitigation of the associated ecological and human health risks are of great concern. Sodium sulfide (Na2S) can be used as an amendment for the immobilization of TMs in contaminated soils; however, the effects of Na2S on the leachability, bioavailability, and uptake of TMs in highly-contaminated soils under field conditions have not been investigated yet. This is the first field-scale research study investigating the effect of Na2S application on soils with Hg, Pb and Cu contents 70-to-7000-fold higher than background values and also polluted with As, Cd, Ni, and Zn. An ex situ remediation project including soil replacement, immobilization with Na2S, and safe landfilling was conducted at Daiziying and Anle (China) with soils contaminated with As, Cd, Cu, Hg, Ni, Pb and Zn. Notably, Na2S application significantly lowered the sulfuric-nitric acid leachable TMs below the limits defined by Chinese regulations. There was also a significant reduction in the DTPA-extractable TMs in the two studied sites up to 85.9 % for Hg, 71.4 % for Cu, 71.9 % for Pb, 48.1 % for Cd, 37.1 % for Zn, 34.3 % for Ni, and 15.7 % for As compared to the untreated controls. Moreover, Na2S treatment decreased the shoot TM contents in the last harvest to levels lower than the TM regulation limits concerning fodder crops, and decreased the TM root-to-shoot translocation, compared to the untreated control sites. We conclude that Na2S has great potential to remediate soils heavily tainted with TMs and mitigate the associated ecological and human health risks.

Keystone taxa of phoD-harboring bacteria mediate alkaline phosphatase activity during biochar remediation of Cd-contaminated soil

Phosphorus (P)-modified biochar can efficiently remediate cadmium (Cd)-contaminated soil. However, the mechanisms of responses of alkaline phosphatase (ALP) and phoD-harboring microorganisms, which are notably sensitive to Cd and P, are not clear during the remediation process. In this study, apple (Malus domestica) tree branches were co-pyrolyzed with tripotassium phosphate (K3PO4) to prepare P-modified biochar, which was used to remediate Cd-soil contaminated soil collected near a mine site. The effect of P-modified biochar on the composition of the phoD-harboring microbial community and its mechanism of interacting with ALP were analyzed. The results showed that the application of P-modified biochar to Cd-contaminated soil promoted the co-precipitation of Cd and phosphate and reduced the content of bioavailable Cd by 69.77 %. P-modified biochar improved the complexity and stability of the soil phoD-harboring microbial community. Furthermore, this study clarified that ALP activity was not completely regulated by the abundance of phoD, but Priestia and Massilia that contain phoD genes dominated the activity of ALP in rhizosphere and bulk soils, respectively. It is notable that bioavailable Cd significantly stimulated Priestia, Massilia, and ALP activity. These findings provide a theoretical basis for the application of P-modified biochar to the remediation of soil contaminated with Cd with respect to P functional microorganisms.

Integrated physiological and omics analyses reveal the mechanism of beneficial fungal Trichoderma sp. alleviating cadmium toxicity in tobacco (Nicotiana tabacum L.)

Cadmium (Cd) is a highly toxic heavy metal and readily accumulates in tobacco, which imperils public health via Cd exposure from smoking. Beneficial microbes have a pivotal role in promoting plant growth, especially under environmental stresses such as heavy metal stresses. In this study, we introduced a novel fungal strain Trichoderma nigricans T32781, and investigated its capacity to alleviate Cd-induced stress in tobacco plants through comprehensive physiological and omics analyses. Our findings revealed that T32781 inoculation in soil leads to a substantial reduction in Cd-induced growth inhibition. This was evidenced by increased plant height, enhanced biomass accumulation, and improved photosynthesis, as indicated by higher values of key photosynthetic parameters, including the maximum quantum yield of photosystem Ⅱ (Fv/Fm), stomatal conductance (Gs), photosynthetic rate (Pn) and transpiration rate (Tr). Furthermore, element analysis demonstrated that T. nigricans T32781 inoculation resulted in a remarkable reduction of Cd uptake by 62.2% and a 37.8% decrease in available soil Cd compared to Cd-stressed plants without inoculation. The protective role of T32781 extended to mitigating Cd-induced oxidative stress by improving antioxidant enzyme activities of superoxide dismutase (SOD), peroxidase (POD), and ascorbate peroxidase (APX). Metabolic profiling of tobacco roots identified 43 key metabolites, with notable contributions from compounds like nicotinic acid, succinic acid, and fumaric acid in reducing Cd toxicity in T32781-inoculated plants. Additionally, rhizosphere microbiome analysis highlighted the promotion of beneficial microbes, including Gemmatimonas and Sphingomonas, by T32781 inoculation, which potentially contributed to the restoration of plant growth under Cd exposure. In summary, our study demonstrated that T. nigricans T32781 effectively alleviated Cd stress in tobacco plants by reducing Cd uptake, alleviating Cd-induced oxidative stress, influencing plant metabolite and modulating the microbial composition in the rhizosphere. These findings offer a novel perspective and a promising candidate strain for enhancing Cd tolerance and prohibiting its accumulation in plants to reduce health risks associated with exposure to Cd-contaminated plants.

Exploring the mechanism of Cd uptake and translocation in rice: Future perspectives of rice safety

Cadmium (Cd) contamination in rice fields has been recognized as a severe global agro-environmental issue. To reach the goal of controlling Cd risk, we must pay more attention and obtain an in-depth understanding of the environmental behavior, uptake and translocation of Cd in soil-rice systems. However, to date, these aspects still lack sufficient exploration and summary. Here, we critically reviewed (i) the processes and transfer proteins of Cd uptake/transport in the soil-rice system, (ii) a series of soil and other environmental factors affecting the bioavailability of Cd in paddies, and (iii) the latest advances in regard to remediation strategies while producing rice. We propose that the correlation between the bioavailability of Cd and environmental factors must be further explored to develop low Cd accumulation and efficient remediation strategies in the future. Second, the mechanism of Cd uptake in rice mediated by elevated CO2 also needs to be given more attention. Meanwhile, more scientific planting methods (direct seeding and intercropping) and suitable rice with low Cd accumulation are important measures to ensure the safety of rice consumption. In addition, the relevant Cd efflux transporters in rice have yet to be revealed, which will promote molecular breeding techniques to address the current Cd-contaminated soil-rice system. The potential for efficient, durable, and low-cost soil remediation technologies and foliar amendments to limit Cd uptake by rice needs to be examined in the future. Conventional breeding procedures combined with molecular marker techniques for screening rice varieties with low Cd accumulation could be a more practical approach to select for desirable agronomic traits with low risk.

The mechanism of DEHP degradation by the combined action of biochar and Arthrobacter sp. JQ-1: Mechanisms insight from bacteria viability, degradation efficiency and changes in extracellular environment

Di(2-ethylhexyl) phthalate (DEHP) has been widely detected in soil, water, and sediment as a priority control pollutant. Immobilized microorganism technology is gradually mature and applied in production. Biochar prepared from agricultural wastes is an excellent immobilized carrier because of its porous structure and abundant functional groups. Environmental acidification was caused by degrading bacteria Arthrobacter sp. JQ-1 (JQ-1) respiration and acidic metabolites during DEHP degradation, which affected the passage life of microorganisms and the removal efficiency of DEHP. The mechanism of DEHP degradation by the combined action of JQ-1 and corn straw biochar (BC) at 600 °C was investigated, and bacterial viability, microenvironmental changes, and kinetic tests were performed in this research. Compared with biodegradation group alone, the degradation rate of DEHP in 1% biochar unloaded and loaded with JQ-1 increased by 18.3% and 30.9%, and its half-life decreased to 23.90 h and 11.95h, a reduction of 31.37 h. The percentage of detected living JQ-1 increased as biochar content increased when loading capacity was less than 1%. In which, (JQ-1-BC2) group was 4.1% higher than (JQ-1-BC1) group. Biochar has the ability to neutralize acidifying environmental pH due to its alkaline functional groups, including lactone group, -OH, -COO-. 1% biochar loaded with JQ-1 increased the pH of the microenvironment by 0.57 and alkaline phosphatase (AKP) activity by 0.0063 U·mL-1, which promoted the reduction of PA. Study suggested that biochar loaded with JQ-1 could simultaneously adsorb and degrade DEHP during the process of DEHP removal. Biochar could be used as a biological stimulant to increase abundance and metabolism, enhance the utilization of DEHP by JQ-1. Biochar (1% (w/v)) loaded with JQ-1 as DEHP removal material showed good performance. Biochar not only as an immobilized carrier, but also as a biostimulant, providing an effective strategy for the collaborative remediation of PAEs contaminated.

Microdiversity sustains the distribution of rhizosphere-associated bacterial species from the root surface to the bulk soil region in maize crop fields

Over the years, the microbial community of maize (Zea mays) rhizosphere has been extensively studied; however, the role of microdiversity sustain rhizosphere-associated microbial species distribution from root surface to bulk soil in mature maize is still unclear. Although operational taxonomic units (OTUs) have been used to classify species, amplicon sequence variants (ASVs) have been shown to be effective in representing microdiversity within OTUs at a finer genetic scale. Therefore, the aim of this study was to examine the role of microdiversity in influencing the distribution of rhizosphere-associated microbial species across environmental gradients from root surface to bulk soil at the OTU and ASV levels. Here, the microbial community structures of bulk, loosely bound, and tightly bound soil samples from maize rhizosphere were examined at OTU and ASV levels. The results showed that OTU and ASV methods exhibited similar microbial community structures in rhizosphere. Additionally, different ecotypes with varying distributions and habitat preferences were observed within the same bacterial OTU at the ASV level, indicating a rich bacterial microdiversity. In contrast, the fungal community exhibited low microdiversity, with no significant relationship between fungal microdiversity and persistence and variability. Moreover, the ecotypes observed within the bacterial OTUs were found to be positively or negatively associated with environmental factors, such as soil organic carbon (SOC), NO3 --N, NH4 +-N contents, and pH. Overall, the results showed that the rich microdiversity could sustain the distribution of rhizosphere-associated bacterial species across environmental gradients from root surface to bulk soil. Further genetic analyses of rhizosphere-associated bacterial species could have considerable implications for potential mediation of microdiversity for sustainable crop production.

Biochar performance for preventing cadmium and arsenic accumulation, and the health risks associated with mustard (Brassica juncea) grown in co-contaminated soils

Cadmium (Cd) and arsenic (As) in co-contaminated soil can enter the human body harming health via the food chain, such as vegetables. Biochar derived from waste has been used to reduce heavy metal uptake by plant, but long-term effects of biochar under Cd and As co-contaminated soil needs to be investigated. A following mustard (Brassica juncea) was grown on co-contaminated soil amended with different raw materials of biochar including biochars pyrolyzed by lignite coal (LCB), rice straw (RSB), silkworm excrement (SEB), and sugar refinery sludge (SSB). The results showed that compared to the control, Cd and As contents of mustard shoot in SSB treatment decreased by 45-49% and 19-37% in two growing seasons, respectively, which was the most effective among 4 biochars. This probably due to SSB owns more abundant Fe-O functional groups. Biochar also altered the microbial community composition, specifically SSB increased proteobacteria abundance by 50% and 80% in the first and second growing seasons, thereby promoted the simultaneous immobilization of Cd and As in soils which may reduce the potential risks to humans. In summary, considering the long-term effects and security of SSB application on mustard, not only is it an effective waste recycle option, but it should also be promoted as a promising approach for safe vegetable production in Cd and As co-contaminated soils.

The combined action of biochar and nitrogen-fixing bacteria on microbial and enzymatic activities of soil N cycling

This study aims to investigate the positive effects of the combined use of Enterobacter cloacae and biochar on improving nitrogen (N) utilization. The greenhouse pots experimental results showed the synergy of biochar and E. cloacae increased soil total N content and plant N uptake by 33.54% and 15.1%, respectively. Soil nitrogenase (NIT) activity increased by 253.02%. Ammonia monooxygenase (AMO) and nitrate reductase (NR) activity associated with nitrification and denitrification decreased by 10.94% and 29.09%, respectively. The relative abundance of N fixing microorganisms like Burkholderia and Bradyrhizobium significantly increased. Sphingomonas and Ottowia, two bacteria involved in the nitrification and denitrification processes, were found to be in lower numbers. The E. cloacae's ability to fix N₂ and promote the growth of plants allow the retention of N in soil and make more N available for plant development. Biochar served as a reservoir of N for plants by adsorbing N from the soil and providing a shelter for E. cloacae. Thus, biochar and E. cloacae form a synergy for the management of agricultural N and the mitigation of negative impacts of pollution caused by excessive use of N fertilizer.

Genetically engineered microorganisms for environmental remediation

In the recent era, the increasing persistence of hazardous contaminants is badly affecting the globe in many ways. Due to high environmental contamination, almost every second species on earth facing the worst issue in their survival. Advances in newer remediation approaches may help enhance bioremediation's quality, while conventional procedures have failed to remove hazardous compounds from the environment. Chemical and physical waste cleanup approaches have been used in current circumstances; however, these methods are costly and harmful to the environment. Thus, there has been a rise in the use of bioremediation due to an increase in environmental contamination, which led to the development of genetically engineered microbes (GEMs). It is safer and more cost-effective to use engineered microorganisms rather than alternative methods. GEMs are created by introducing a stronger protein into bacteria through biotechnology or genetic engineering to enhance the desired trait. Biodegradation of oil spills, halobenzoates naphthalenes, toluenes, trichloroethylene, octanes, xylenes etc. has been accomplished using GEMs such bacteria, fungus, and algae. Biotechnologically induced microorganisms are more powerful than naturally occurring ones and may degrade contaminants faster because they can quickly adapt to new pollutants they encounter or co-metabolize. Genetic engineering is a worthy process that will benefit the environment and ultimately the health of our people.

Corncob biochar combined with Bacillus subtilis to reduce Cd availability in low Cd-contaminated soil

Soil contamination by heavy metals such as Cd can pose a risk to the environment and human health. However, Cd is difficult to immobilize at low concentration levels in soil. Individually, Bacillus subtilis and biochar have been shown to be inefficient at immobilizing Cd in soil. In this study, corncob biochar was generated at different pyrolysis temperatures (300 °C-550 °C), and the Cd immobilization efficiency and performance of corncob biochar loaded with B. subtilis (CB@B) and corncob biochar alone (CB) were evaluated in solutions and in soil. The characterization (SEM and FTIR) of CB generated at different pyrolysis temperatures and CB generated at different pyrolysis temperatures in CB@B (300 °C-550 °C) indicated that a superior pore structure and abundant O-functional groups were obtained at a pyrolysis temperature of 400 °C for both CB@B and CB. The X-ray diffraction and X-ray photoelectron spectroscopy results indicate that the formation of Cd compounds was associated with the positive combined biosorption effect of the bacteria and biochar, electronic adsorption, activity of the O-functional groups (C[double bond, length as m-dash]O, COOH, OH, and Si-O-Si), and complexation between extracellular substances and Cd²⁺. Adsorption experiments were conducted in a solution to assess the effects of various operating parameters such as the time, pH, and adsorbent dose. The 400 °C-CB@B and 400 °C-CB samples achieved the largest reductions in the Cd concentration at 81.21% and 5.70%, respectively. Then, CaCl₂ extraction experiments were conducted in soil, and using 0.25%-CB@B, a 55.21% decrease was realized in the Cd concentration after 56 days and a 16.71% increase was realized in soil pH to 8.38. No significant difference was observed in the CB-treated groups, among which 1.0%-CB achieved the largest reduction of 26.08% after 56 days and a 3.20% increase in the soil pH to 7.41. The Tessier sequential extraction method obtained similar trends. Overall, 400 °C-CB@B demonstrated outstanding immobilization efficiency and durability, indicating that it provided a safe and nutrient-rich habitat for B. subtilis to realize a synergistic effect for Cd immobilization.

The effects of biochar aging on rhizosphere microbial communities in cadmium-contaminated acid soil

Biochars are widely used in the remediation of Cd-contaminated soils. However, changes in the bacterial communities in the rhizosphere contaminated with Cd in response to biochar aging are poorly studied. Addressing this gap in knowledge is important to improving micro-ecological services on healthy growth of plants with mitigation strategies against Cd contamination. An aging experiment (270 days) was conducted with biochars derived from poultry litter and sugar-gum wood added to a Cd-contaminated acid soil. Bacterial communities in the rhizosphere of Brassica rapa and bulk soils were investigated after 1, 90 and 270 days of biochar aging. There was no significant difference (P > 0.05) in bacterial Shannon and Simpson indices between the control and biochar treatments. However, compared to the no-Cd control, the addition of Cd decreased the relative abundances of Firmicutes, Chloroflexi and Acidobacteriota but increased those of Actinobacteriota and Proteobacteria. Poultry-litter biochar had the largest effect on bacterial community composition, especially in the rhizosphere. Aging of poultry-litter biochar increased the abundance of Armatimonadota over time more than the sugar-gum-wood biochar, which was attributed to a lower pH and higher bioavailability of Cd in the sugar-gum-wood biochar treatment. The addition of poultry-litter biochar to the contaminated soil mitigated the bioaccumulation of Cd by increasing soil pH and restoring soil bacterial ecology in contaminated acid soils over time.

Rhizobacteria communities reshaped by red mud based passivators is vital for reducing soil Cd accumulation in edible amaranth

Red mud (RM) was constantly reported to immobilize soil cadmium (Cd) and reduce Cd uptake by crops, but few studies investigated whether and how RM influenced rhizobacteria communities, which was a vital factor determining Cd bioavailability and plant growth. To address this concern, high-throughput sequencing and bioinformatics were used to analyze microbiological mechanisms underlying RM application reducing Cd accumulation in edible amaranth. Based on multiple statistical models (Detrended correspondence analysis, Bray-Curtis, weighted UniFrac, and Phylogenetic tree), this study found that RM reduced Cd content in plants not only through increasing rhizosphere soil pH, but by reshaping rhizobacteria communities. Special taxa (Alphaproteobacteria, Gammaproteobacteria, Actinobacteriota, and Gemmatimonadota) associated with growth promotion, anti-disease ability, and Cd resistance of plants preferentially colonized in the rhizosphere. Moreover, RM distinctly facilitated soil microbes' proliferation and microbial biofilm formation by up-regulating intracellular organic metabolism pathways and down-regulating cell motility metabolic pathways, and these microbial metabolites/microbial biofilm (e.g., organic acid, carbohydrates, proteins, S^2-, and PO₄^3-) and microbial cells immobilized rhizosphere soil Cd via the biosorption and chemical chelation. This study revealed an important role of reshaped rhizobacteria communities acting in reducing Cd content in plants after RM application.

Nanobiochar-rhizosphere interactions: Implications for the remediation of heavy-metal contaminated soils

Soil heavy metal contamination has increasingly become a serious environmental issue globally, nearing crisis proportions. There is an urgent need to find environmentally friendly materials to remediate heavy-metal contaminated soils. With the continuing maturation of research on using biochar (BC) for the remediation of contaminated soil, nano-biochar (nano-BC), which is an important fraction of BC, has gradually attracted increasing attention. Compared with BC, nano-BC has unique and useful properties for soil remediation, including a high specific surface area and hydrodynamic dispersivity. The efficacy of nano-BC for immobilization of non-degradable heavy-metal contaminants in soil systems, however, is strongly affected by plant rhizosphere processes, and there is very little known about the role that nano-BC play in these processes. The rhizosphere represents a dynamically complex soil environment, which, although having a small thickness, drives potentially large materials fluxes into and out of plants, notably agricultural foodstuffs, via large diffusive gradients. This article provides a critical review of over 140 peer-reviewed papers regarding nano-BC-rhizosphere interactions and the implications for the remediation of heavy-metal contaminated soils. We conclude that, when using nano-BC to remediate heavy metal-contaminated soil, the relationship between nano-BC and rhizosphere needs to be considered. Moreover, the challenges to extending our knowledge regarding the environmental risk of using nano-BC for remediation, as well as further research needs, are identified.

Goethite modified biochar simultaneously mitigates the arsenic and cadmium accumulation in paddy rice (Oryza sativa) L

Cadmium (Cd) and arsenic (As) contamination of paddy soils is a serious global issue because of the opposite geochemical behavior of Cd and As in paddy soils. Rice plant (Oryza sativa L.) cultivation in Cd- and As- contaminated paddy soil is regarded as one of the main dietary cause of Cd and As entry in human beings. This study aimed to determine the impact of goethite-modified biochar (GB) on bioavailability of both Cd and As in Cd- and As- polluted paddy soil. Contrary to control and biochar (BC) amendments, the application of GB amendments significantly impeded the accumulation of both Cd and As in rice plants. The results confirmed an obvious reduction in Cd and As content of rice grains by 85% and 77%, respectively after soil supplementation with GB 2% amendment. BC 3% application minimized the Cd uptake by 59% in the rice grains as compared to the control but exhibited a little impact on As accumulation in rice grains. Sequential extraction results displayed an increase in immobile Cd and As fractions of the soil by decreasing the bioavailable fractions of both elements after GB treatments. Fe-plaque formation on the root surfaces was significantly variable (P ˂ 0.05) among all the amendments. GB 2% treatment significantly increased the Fe content (10 g kg^-1) of root Fe-plaque by 48%, which ultimately enhanced the sequestration of Cd and As by Fe-plaque and minimized the transport of Cd and As in rice plants. Moreover, GB treatments significantly changed the relative abundance of the microbial community in the rice rhizosphere and minimized the metal(loid)s mobility in the soil. The relative abundance of Acidobacteria, Firmicutes and Verrucomicrobia increased with GB 2% treatment while those of Bacteroidetes and Choloroflexi decreased. Our findings confirmed improvement in the rice grains quality regarding enhanced amino acid contents with GB application. Overall, the results of this study demonstrated that GB amendment simultaneously alleviated the Cd and As concentrations in edible parts of rice plant and provided a new valuable method to protect the public health by effectively remediating the co-occurrence of Cd and As in paddy soils.

Effect of rapeseed straw-derived biochar on soil bacterial community structure at tillering stage of Oryza Sativa

Numerous studies have reported the dynamics of microbes when biochar was applied, whereas the information on the alterations of bacterial community after application of rapeseed straw-derived biochar is limited. A pot experiment with two rapeseed straw-derived biochar application treatments (with biochar application at the rate of 200 g/pot, C1) and (without biochar application, 0 g/pot, C0) was conducted. No significant differences were observed in the number of operational taxonomic units, observed species, Shannon index, Simpson index, Chao1, ACE, and phylogenetic diversity whole tree between the C1 and C0 treatments. Taxonomic analysis at the genus level showed that the abundances of Gracilibacter, Lentimicrobium, unidentified Rikenellaceae, Hydrogenophaga, and Bacillus were higher in the C1 compared to the C0 treatment, while Candidatus Solibacter, Candidatus Koribacter, and Lutispora abundances were found to be higher abundant in the C0 compared to the C1 treatment. Obvious clusters were observed between the C1 and C0 in both principal component analysis and non-metric multidimensional scaling. These results indicate that soil bacterial community was altered after rapeseed straw-derived biochar was applied.

Does biochar application in heavy metal-contaminated soils affect soil micronutrient dynamics?

Biochar has been practically used as a soil conditioner in degraded or contaminated soils. Whether biochar would simultaneously affect soil micronutrient bioavailability in heavy metal-contaminated soils warrants research. A 90-d incubation of rice straw biochar with either Pb- or Cd-contaminated soils was conducted to investigate the biochar effect on Fe, Mn, Cu and Zn bioavailability. Biochar amendment decreased the DTPA-extractable, acid extractable and reducible Pb and Cd but increased the oxidizable and residual Pb and Cd. It decreased the DTPA-extractable Fe by 73.8% and 23.1% but increased the DTPA-extractable Mn by 9.8% and 44.3% in the neutral and acidic soil, respectively. The lower Fe availability was attributed to the liming effect and the increased numbers of oxygen-containing groups and organic-mineral phases of biochar over time. Biochar amendment increased soil bacterial richness and diversity in both soils. Rice straw biochar can effectively immobilize heavy metals and reduce soil Fe bioavailability but increase Mn bioavailability, which would potentially affect soil micronutrient fertility and productivity.

Cd and Pb immobilisation with iron oxide/lignin composite and the bacterial community response in soil

Iron oxide is a natural mineral that generally exists in the form of iron oxide-organic complexes (Fe-OM) in soil. Lignin is a naturally occurring polymer that is considered to be an important part of soil carbon cycling. In this study we prepared a composite material (MGE) with iron oxide and lignin based on the Fe-OM present in the soil. MGE was then applied to remediate Cd and Pb in contaminated soil. The results show that DTPA-Cd and DTPA-Pb levels were reduced by 58.87% and 78.09%, respectively. The bacterial community diversity index decreased in the iron oxide (GE) group, but a slight increase was observed in the MGE group. In terms of species composition in the MGE group, the abundance of Proteobacteria, Gemmatimonadota and Acidobacteriota increased, while the abundance of Bacteroidota, Actinobacteriota and Firmicutes decreased. The outcome in the GE group was the opposite. In the MGE group, HCl-Fe²⁺, HCl-Fe³⁺, and pH were significantly higher than in the other groups, indicating that MGE stimulated the growth of iron-reducing bacteria (FeRB) and promoted iron redox reactions. Iron oxide could be reduced to Fe²⁺ due to the activity of FeRB, and then Fe²⁺ would be oxidised and hydrolysed, which led to an increase in soil pH. Secondary minerals were formed during this process. With the oxidation of Fe²⁺ and the formation of secondary minerals, Cd and Pb could be stabilised in the oxides and were not easily released through a co-precipitation mechanism.

In‒situ immobilization remediation, soil aggregate distribution, and microbial community composition in weakly alkaline Cd‒contaminated soils: A field study

Biochar has advantages of a large specific surface area and micropore structure, which is beneficial for immobilization remediation of heavy metal‒contaminated soils. A field experiment was conducted to investigate the effects of rice husk biochar (BC) (7.5, 15, and 15 t hm^-2) on Cd availability in soils and accumulation in maize (Zea mays L), soil aggregate structure, and microbial community abundance. The results show that BC treatment promoted the formation of large aggregates (5-8 and 2-5 mm) and enhanced aggregate stability, whereas it decreased the proportion of ≤0.25 mm soil aggregates. The geometric mean diameter and mean weight diameter under BC‒treated soils increased by 9.9%-40.5% and 3.6%-32.7%, respectively, indicating that the stability of soil aggregates increased. Moreover, BC facilitated the migration of Cd from large particles (>0.5 mm aggregates) to small particles (<0.25 mm aggregates). The application of BC decreased diethylenetriamine pentaacetic acid ‒extractable Cd by 17.6%-32.12% in contrast with the control. The amount of Cd in maize was reduced by 56.7%-81.1% for zhengdan958, 52.4%-85.9% for Sanbei218, and 73.7%-90.4% for Liyu16. When compared with the control groups, BC addition significantly (P < 0.05) increased the number of Ace observed, Shannon diversity indices, and the relative abundances of Proteobacteria, Acidobacteria, and Bacteroidetes. Therefore, rice husk BC exhibited a certain feasibility in immobilizing remediation of weakly alkaline Cd‒contaminated soils.

Enhanced cornstalk decomposition by a psychrotrophic bacterial consortium comprising cellulose, hemicellulose, and lignin degraders with biochar as a carrier for carbonneutrality

To explore an effective approach for accelerating cornstalk decomposition and return under low temperature, nine psychrotrophic cellulose-, hemicellulose-, and lignin-degrading bacterial strains were used with biochar as the carrier to prepare a novel psychrotrophic stalk-degrading bacterial consortium (PSBC). With PSBC, the maximum cornstalk degradation rate reached 59.3% after 50 d at 10-15 °C, which accelerated cornstalk decomposition, resulting in increases in organic matter, phosphorus, and potassium in the soil. Microbial community analysis demonstrated that PSBC enhanced microbial community diversity and altered specific selection. Genera Arthrobacter, Pseudomonas, and Pantoea in PSBC became dominant in the soil microbiota, which benefited cornstalk degradation. Therefore, this work provides a promising strategy to facilitate the degradation of cornstalks in cold regions, which has potential application value for carbon neutrality.

Streptomyces pactum and Bacillus consortium influenced the bioavailability of toxic metals, soil health, and growth attributes of Symphytum officinale in smelter/mining polluted soil

Soil microbes influence the uptake of toxic metals (TMs) by changing soil characteristics, bioavailability and translocation of TMs, and soil health indicators in polluted environment. The potential effect of Streptomyces pactum (Act12) and Bacillus consortium (B. subtilis and B. licheniformis; 1:1) on soil enzymes and bacterial abundance, bioavailability and translocation of Zn and Cd by Symphytum officinale, and physiological indicators in soil acquired from Fengxian (FX) mining site. Act12 and Bacillus consortium were applied at 0 (CK), 0.50 (T1), 1.50 (T2), and 2.50 (T3) g kg^-1 in a split plot design and three times harvested (H). Results showed that soil pH significantly dropped, whereas, electrical conductivity increased at higher Act12 and Bacillus doses. The extractable Zn lowered and Cd increased at each harvest compared to their controls. Soil β-glucosidase, alkaline phosphatase, urease and sucrase improved, whereas, dehydrogenase reduced in harvest 2 and 3 (H2 and H3) as compared to harvest 1 (H1) after Act12 and Bacillus treatments. The main soil phyla individually contributed ∼5-55.6%. Soil bacterial communities' distribution was also altered by Act12 and Bacillus amendments. Proteobacteria, Acidobacteria, and Bacteroidetes increased, whereas, the Actinobacteria, Chloroflexi, and Gemmatimonadetes decreased during the one-year trial. The Zn and Cd concentration significantly decreased in shoots at each harvest, whereas, the roots concentration was far higher than the shoots, implicating the rhizoremediation by S. officinale. Accumulation factor (AF) and bioconcentration ratio (BCR) of Zn and Cd in shoots were lower and remained higher in case of roots than the standard level (≥1). BCR values of roots indicated that S. officinale can be used for rhizoremediation of TMs in smelter/mines-polluted soils. Thus, field trials in smelter/mines contaminated soils and the potential role of saponin and tannin exudation in metal translocation by plant will broaden our understanding about the mechanism of rhizoremediation of TMs by S. officinale.

Bacillus subtilis and saponin shifted the availability of heavy metals, health indicators of smelter contaminated soil, and the physiological indicators of Symphytum officinale

Bacillus subtilis and saponin were tested for the uptake of heavy metals (HMs) by Symphytum officinale grown in a smelter-contaminated soil in completely randomized design. Soil pH and electrical conductivity increased by 0.11 unit (T3) and 754 mS cm^-1 (T2), respectively. The bioavailable Zn decreased by 5.80% (T2); Cd and Pb increased by 6.21% (T2) and 13.46% (T3), respectively. Soil urease increased by 24% (T3) and alkaline phosphatase, β-glucosidase, and dehydrogenase decreased by 20% (T2), 27.70% (T2), and 21% (T1), respectively. Soil amendments altered the microbial diversity. Fourier-transform infrared spectroscopy and X-ray diffraction reported no obvious changes, except saponin application, which led to possible release of HMs in soil. The fresh weight of Symphytum officinale increased by 21.3 and 5.50% in T2 and T3, respectively. Chlorophyll (a) and carotenoid decreased by the sole application of B. subtilis and saponin and vice-versa for chlorophyll (b). Mono-application of B. subtilis efficiently increased the peroxidase (POD: 27%) and polyphenol oxidase (PPO: 13.56%), whereas, co-application enhanced the phenylalanine ammonia-lyase (PAL: 6.50%) level in shoots. Zn concentration in the shoots and roots declined by 12.75 and 27.32% in T1, respectively. Cd increased (3.92%, T3) in shoots and decreased (39.25%, T1) in roots; Pb concentration remained below detection in shoots and increased by 40% (T3) in roots due to accumulation in dead cells and cell vacuoles. Overall, B. subtilis and saponin influenced the bioavailability of HMs, enzymatic activities, and bacterial abundance in the soil; plant growth indicators, antioxidants activities, and metal uptake in shoots and roots.

Synergistic inhibitory effect of selenium, iron, and humic acid on cadmium uptake in rice (Oryza sativa L.) seedlings in hydroponic culture

Selenium (Se), iron (Fe), and humic acid (HA) are beneficial fertilizers that inhibit cadmium (Cd) uptake in crops and are crucial for agricultural yields as well as human health. However, the joined effect of Se, Fe, and HA on Cd uptake in rice are still poorly understood. Therefore, a hydroponic culture experiment was established to evaluate the combined effect of Se (Se⁴⁺ or Se⁶⁺), Fe, and HA on the biomass, Cd uptake, and Cd translocation of/in rice seedlings. Compared to Se⁶⁺ application, Se⁴⁺ application in most treatments resulted in lower Cd translocations from roots to shoots, leading to a significant decrease in shoot Cd concentrations. Compared to the treatments with Se⁴⁺ or Fe²⁺ application, joined application of Se⁴⁺ and Fe²⁺ inhibited Cd uptake in shoots by decreasing Cd adsorption onto (iron plaque) and uptake by roots, and alleviating Cd translocation from root to shoot. Compared to the treatments with Se⁶⁺ or Fe²⁺ application, joined application of Se⁶⁺ and Fe²⁺ inhibited Cd uptake in shoots by sequestering (retaining) Cd onto root surface (iron plaque). HA inhibited Cd uptake in all treatments by decreasing the bioavailability of Cd in the nutrient solution through complexation. The simultaneous application of Se, Fe, and HA decreased the shoot Cd concentrations the most, followed by the combined application of two fertilizers and their individual application; the mean shoot Cd concentration in the Fe-SeIV-HA2 treatment was the lowest among all the treatments, at only 11.39 % of those in the control treatments. The 3-way ANOVA results indicated that the Cd concentrations in shoots were significantly affected by Se, Fe, HA, and certain of their interactions (Fe×Se and Se×HA) (p< 0.05). The above findings suggest that the joined application of Se, Fe, and HA ameliorated Cd uptake mainly by inhibiting Cd adsorption onto (iron plaque) and uptake by roots and the translocation from roots to shoots (Fe×Se⁴⁺), retaining (sequestering) Cd in iron plaque (Fe×Se⁶⁺), and decreasing Cd availability in nutrient solution (HA).

Rhizosphere dissolved organic matter and iron plaque modified by organic amendments and its relations to cadmium bioavailability and accumulation in rice

Organic amendments can modify rhizosphere dissolved organic matter (DOM) properties and Fe-plaque quantity, thereby affecting cadmium (Cd) bioavailability and uptake by rice. Pot experiments were conducted to investigate effects of biochar (BC) and vermicompost (VC) at different rates (0, 1%, and 5%) on rhizosphere DOM characteristics and Fe-plaque quantity, and their impacts on Cd bioavailability and accumulation in high and low Cd-accumulation rice cultivars (HAC and LAC). Soil DOM was characterized by ultraviolet-visible (UV-Vis) and fluorescence excitation-emission matrix (EEM) spectrum analyses. Hydroponic experiments were conducted to investigate effects of BC- or VC-derived DOM combined Fe-plaque on Cd uptake by rice. Results showed that increasing rates of organic amendments increased DOM concentration while decreased Cd availability in rhizosphere and bulk soils and Cd contents in rice tissues. The Cd reduction in LAC grains (31.9%-72.7%) was better than that in HAC grains (6.3%-25.4%) after organic amendment addition. Soil DOM properties were modified by organic amendments towards higher aromaticity, molecular weight, and stability. VC resulted in a greater increase of humic-like fractions but reduced protein-like proportions in rhizosphere DOM over BC. Negative correlations were observed between humic-like fractions and available Cd in the rhizosphere. Likewise, VC (especially 5%VC) promoted the formation of Fe-plaque and limited Cd soil-to-root transport, while BC groups showed a reverse trend. The results of hydroponic experiments confirmed BC- and VC-derived DOM and Fe-plaque further inhibited Cd uptake by rice via the complexation with Cd and the sequestration of Cd, respectively. Hence, VC application combined with low Cd-accumulation rice could be an effective strategy for the safe utilization of Cd-contamination soils.

The Use of Biochar for Plant Pathogen Control

To support the search for alternative, nonchemical plant disease control strategies, we present a review of the pathogen-suppressive effects of biochar, a product derived from agricultural and other organic wastes, used as a soil amendment. A wide range of biochar effects contribute to the control of root or foliar fungal pathogens through modification of root exudates, soil properties, and nutrient availability, which influence the growth of antagonist microorganisms. The induction of systemic plant defenses by biochar in the roots to reduce foliar pathogenic fungi, the activation of stress-hormone responses, as well as changes in active oxygen species are indicative of a coordinated hormonal signaling within the plant. Although scarce data are available for oomycetes and bacterial pathogens, reports indicate that biochar promotes changes in the soil microbiota influencing pathogen motility and colonization, and the induction of plant systemic defenses, both contributing to disease suppression. Biochar also suppresses nematode and insect pests. For plant-parasitic nematodes, the primary modes of action are changes in soil microbial community diversity, the release of nematicidal compounds, and the induction of plant defenses. Use of biochar-based soil amendments is a promising strategy compatible with a circular economy, based on zero waste, as part of integrated pathogen and pest management. Since biochars exert complex and distinct modes of action for the control of plant pathogens, its nature and application regimes should be designed for particular pathogens and its effects studied locally.

Influences of modified biochar on metal bioavailability, metal uptake by wheat seedlings (Triticum aestivum L.) and the soil bacterial community

A 6 weeks pot culture experiment was carried out to investigate the stabilization effects of a modified biochar (BCM) on metals in contaminated soil and the uptake of these metals by wheat seedlings. The results showed that the application of BCM significantly increased the soil fertility, the biomass of wheat seedling roots increased by more than 50%, and soil dehydrogenase (DHA) and catalase (CAT) activities increased by 369.23% and 12.61%, respectively. In addition, with the application of BCM, the diethylenetriaminepentaacetic acid extractable (DTPA-extractable) Cd, Pb, Cu and Zn in soil were reduced from 2.34 to 0.38 mg/kg, from 49.27 to 25.65 mg/kg, from 3.55 mg/kg to below the detection limit and from 4.05 to 3.55 mg/kg, respectively. Correspondingly, the uptake of these metals in wheat roots and shoots decreased by 62.43% and 79.83% for Cd, 73.21% and 66.32% for Pb, 57.98% and 68.92% for Cu, and 40.42% and 43.66% for Zn. Furthermore, BCM application decreased the abundance and alpha diversity of soil bacteria and changed the soil bacterial community structure dramatically. Overall, BCM has great potential for the remediation of metal-contaminated soils, but its long-term impact on soil metals and biota need further research.

Acinetobacter tandoii ZM06 Assists Glutamicibacter nicotianae ZM05 in Resisting Cadmium Pressure to Preserve Dipropyl Phthalate Biodegradation

Dipropyl phthalate (DPrP) coexists with cadmium as cocontaminants in environmental media. A coculture system including the DPrP-degrading bacterium Glutamicibacter nicotianae ZM05 and the nondegrading bacterium Acinetobacter tandoii ZM06 was artificially established to degrade DPrP under Cd(II) stress. Strain ZM06 relieved the pressure of cadmium on strain ZM05 and accelerated DPrP degradation in the following three ways: first, strain ZM06 adsorbed Cd(II) on the cell surface (as observed by scanning electron microscopy) to decrease the concentration of Cd(II) in the coculture system; second, the downstream metabolites of ZM05 were utilized by strain ZM06 to reduce metabolite inhibition; and third, strain ZM06 supplied amino acids and fatty acids to strain ZM05 to relieve stress during DPrP degradation, which was demonstrated by comparative transcriptomic analysis. This study provides an elementary understanding of how microbial consortia improve the degradation efficiency of organic pollutants under heavy metals contamination.

Assembly strategies of the wheat root-associated microbiome in soils contaminated with phenanthrene and copper

Plants can cope with stressful conditions by indirectly regulating root-associated microbial structures. However, the recruitment strategies of the root-associated microbiome in combined organic and inorganic contaminated soils are not well known, especially for common agricultural crops. In this study, we performed greenhouse experiments to investigate the interactive effects of joint copper (Cu) and phenanthrene (PHE) pollution on wheat growth and microbial detoxication processes. Results show that heavy metals did not affect PHE dissipation in the rhizosphere but significantly enhanced the accumulation of PHE in the endosphere. In contrast, the addition of PHE did not influence the absorption of Cu by wheat roots. Cu was the primary factor affecting the variation of microbial communities in cocontaminated treatments among each rhizocompartment while the interactive effects of combined pollutants were only detected in unplanted bulk soil. Microbes are known to degrade polycyclic aromatic hydrocarbons and tolerant heavy metal stress e.g. Novosphingobium, Sphingomonas, Sphingobium and Pseudomonas enriched in the contaminated treatments. Our results provide an integrated understanding of the synthetic effects of combined pollutants on the root-microbial assemblage process in plant-soil systems and offer useful information on the selection of effective bioremediating root-associated microbes for the application of self-remediation by common crops.

Effect of sterilization on cadmium immobilization and bacterial community in alkaline soil remediated by mercapto-palygorskite

Cadmium (Cd) pollution in alkaline soil in some areas of northern China has seriously threatened wheat production and human health. However, there are still few effective amendments for alkaline soil, and the mechanism of amendments with a good immobilization effect remains unclear. In this study, soil sterilization experiments were conducted to investigate the effects of soil microorganisms on the immobilization of a novel amendment-mercapto palygorskite (MPAL) in Cd-contaminated alkaline soils. The results showed that the mercapto on the MPAL surface was not affected by autoclaving. Compared with the control, the available Cd concentration in 0.025% MPAL treatments decreased by 18.80-29.23% after 1 d of aging and stabled after 10 d of aging. Importantly, the immobilization of MPAL on Cd in sterilized soil was significantly better than that in natural soil due to the changes in Cd fractions. Compared with MPAL-treated natural soil, exchangeable Cd fraction and carbonate-bound Cd fraction in MPAL-treated sterilized soil decreased by 20.79-27.09% and 20.05-26.45%, while Fe/Mn oxide-bound Cd fraction and organic matter-bound Cd fraction increased by 17.77-22.68% and 18.85-27.32%. Phylogenetic investigation of communities by reconstruction of unobserved states (PICRUSt) analysis found that the potential functions of the microbial community in normal and sterilized soil were different significantly. Soil sterilization increased the soil pH and decreased the arylsulfatase activity, but did not change the soil zeta potential and available sulfur. The changes in Cd fractions in MPAL-treated sterilized soil may be related to the reduction in the bacterial community and the changes in function microbial, but not to the soil properties. In addition, MPAL application had little effects on the bacterial community, soil pH value, zeta potential, available sulfur, and arylsulfatase. These results showed that the immobilization of MPAL on Cd in alkaline soil was stable and effective, and was not affected by soil sterilization and soil microorganism reduction.

Effect of terminal temperature on the morphology and potentially toxic metals concentrations of biochars derived from paper and kitchen waste

This study investigated the morphology and potentially toxic metal concentrations of paper waste-based biochar (PB) and kitchen waste-based biochar (KB) obtained at 500 and 700 °C. The morphology and potentially toxic metals (Cr, Mn, Cu, Cd, Pb, Zn, Ag, and Ba) concentrations in the biochars were determined by SEM and FT-IR analysis. The Cr, Mn, Cu, and Cd concentrations in PB were low, while the Ba content was relatively high at 0.1 mg∙kg^-1. An increase in the terminal temperature led to an increase in the concentrations of Fe/Mn oxide-bound potentially toxic metals of PB, and a decrease in the concentrations of organic matter-bound potentially toxic metals. The Fe/Mn oxide-bound Cr, Mn, Cu, Pb, and Zn concentrations of KB decreased with an increase in the terminal temperature. Therefore, increasing the terminal temperature could reduce the bioavailability of potentially toxic metals in PB and KB. The environmental risk of the different biochars when used for soil remediation was assessed by the potential ecological risk index (RI), and a case study of a Tibetan soil was also conducted. The potentially toxic metal concentrations leached from both PB and KB were lower than the relevant standards. The findings showed that both PB and KB can be safely used for soil remediation.

Bacteria associated with cockroaches: health risk or biotechnological opportunity?

Abstract

Cockroaches have existed for 300 million years and more than 4600 extant species have been described. Throughout their evolution, cockroaches have been associated with bacteria, and today Blattabacterium species flourish within specialized bacteriocytes, recycling nitrogen from host waste products. Cockroaches can disseminate potentially pathogenic bacteria via feces and other deposits, particularly members of the family Enterobacteriaceae, but also Staphylococcus and Mycobacterium species, and thus, they should be cleared from sites where hygiene is essential, such as hospitals and kitchens. On the other hand, cockroaches also carry bacteria that may produce metabolites or proteins with potential industrial applications. For example, an antibiotic-producing Streptomyces strain was isolated from the gut of the American cockroach Periplaneta americana. Other cockroach-associated bacteria, including but not limited to Bacillus, Enterococcus, and Pseudomonas species, can also produce bioactive metabolites that may be suitable for development as pharmaceuticals or plant protection products. Enzymes that degrade industrially relevant substrates, or that convert biomasses into useful chemical precursors, are also expressed in cockroach-derived bacteria and could be deployed for use in the food/feed, paper, oil, or cosmetics industries. The analysis of cockroach gut microbiomes has revealed a number of lesser-studied bacteria that may form the basis of novel taxonomic groups. Bacteria associated with cockroaches can therefore be dangerous or useful, and this review explores the bacterial clades that may provide opportunities for biotechnological exploitation.

Key points

• Members of the Enterobacteriaceae are the most frequently cultivated bacteria from cockroaches.

• Cultivation-independent studies have revealed a diverse community, led by the phyla Bacteroidetes and Firmicutes.

• Although cockroaches may carry pathogenic bacteria, most strains are innocuous and may be useful for biotechnological applications.

Reduction mechanism of Cd accumulation in rice grain by Chinese milk vetch residue: Insight into microbial community

Chinese milk vetch is an efficient approach to reduce Cd accumulation in rice, nevertheless, its reduction mechanism is not well understood. In this study, we investigated the rice grain Cd, soil properties and microbial community in a Cd-polluted paddy field amended with milk vetch residue (MV) or without (CK) during rice growth period. We found that milk vetch residue averagely decreased the Cd content in rice grain by 45%. Decrease of Cd in rice mainly attributed to the inhibition of Cd activation by milk vetch residue at heading stage probably by the formation of HA-Cd (Humic Acid) and CdS. Increased pH and organic matter (OM) promoted the reduction of available Cd. In addition, nonmetric multidimensional scaling (NMDS) analysis revealed that microbial community structure was significantly different between MV and CK treatment (r = 0.187, p = 0.002), and the core functions of differentially abundant genera were mainly associated with N-cycling, organic matter degradation and sulfate-reducing. The application of milk vetch residue increased the abundance of sulfate-reducing bacteria (SRB) by 8-112% during the rice growth period, which may involve in promoting the transformation of Cd to a more stably residual Cd (CdS). Canonical correspondence analysis (CCA) and mantel test analysis indicated that available K (p = 0.004) and available N (p = 0.005) were the key environmental factors of shaping the SRB. Altogether, changes in soil properties affected microbial structure and functional characteristics, especially the response of SRB in MV treatment would provide valuable insights into reducing the bioavailability of Cd in soil.

Distinct rhizobacterial functional assemblies assist two Sedum alfredii ecotypes to adopt different survival strategies under lead stress

Lead (Pb) contamination presents a widespread environmental plague. Sedum alfredii is widely used for soil phytoremediation owing to its capacity to extract heavy metals, such as Pb. Although efficient Pb extraction is mediated by complex interactions between the roots and rhizospheric bacteria, the mechanism by which S. alfredii recruits microorganisms under Pb stress remains unclear. The Pb-accumulating ecotype (AE) and non-accumulating ecotype (NAE) of S. alfredii recruited different rhizobacterial communities. Under Pb stress, AE rhizosphere-enriched bacteria assembled into stable-connected clusters with higher phylogenetic and functional diversity. These microbes, e.g., Flavobacterium, could release indoleacetic acid to promote plant growth and siderophores, thereby increasing Pb availability. The NAE rhizosphere-enriched functional bacteria "desperately" assembled into highly specialized functional clusters with extremely low phylogenetic diversity. These bacteria, e.g., Pseudomonas, could enhance phosphorus solubilization and Pb precipitation, thereby reducing Pb stress and plant Pb accumulation. High niche overlap level of the rhizo-enriched species raised challenges in soil resource utilization, whereas the NAE community assembly was markedly constrained by environmental "selection effect" than that of AE rhizobacterial community. These results indicate that different ecotypes of S. alfredii recruit distinct bacterial functional assemblies to drive specific plant-soil feedbacks for different survival in Pb-contaminated soils. To cope with heavy metal stress, NAE formed a highly functional and specialized but vulnerable community and efficiently blocked heavy metal absorption by plants. However, the AE community adopted a more stable and elegant strategy to promote plant growth and the accumulation of dry matter via multiple evolutionary strategies that ensured a high yield of heavy metal phytoextraction. This for the first time provides new insights into the roles of rhizosphere microbes in plant adaptations to abiotic stresses.

Apricot shell- and apple tree-derived biochar affect the fractionation and bioavailability of Zn and Cd as well as the microbial activity in smelter contaminated soil

The aim of this study was to elucidate the effects of apricot shell-derived biochar (ASB) and apple tree-derived biochar (ATB) on soil properties, plant growth, microbial communities, enzymatic activities, and Zn and Cd fractionation and phytoavailability in mining soils. Smelter soil contaminated by Zn (1860.0 mg kg^-1) and Cd (39.9 mg kg^-1) was collected from Fengxian, China, treated with different doses (0 (control), 1, 2.5, 5, and 10% w/w) of both biochars and cultivated by Brassica juncea in a greenhouse pot experiment. The acid-soluble, reducible, oxidizable, and residual fraction and plant tissue concentrations of Zn and Cd were determined. Biochar addition improved plant growth (22.6-29.4%), soil pH (up to 0.94 units), and soil organic matter (up to 4-fold) compared to the control. The ASB and ATB, particularly ATB, reduced the acid-soluble (21-26% for Zn and 15-35% for Cd) and the reducible (9-36% for Zn and 11-19% for Cd) fractions of Zn and Cd and altered these fractions in the organic and residual fractions. Therefore, the biochars decreased the metal concentrations in the roots (36-41% for Zn and 33-37% for Cd) and shoots (25-31% for Zn and 20-29% for Cd), which might be due to the increase in pH, biochar liming effects, and metal sorption by the biochar. The biochars impact on the bacterial community composition was selective. The ASB and ATB decreased the activities of soil β-glucosidase, dehydrogenase, and alkaline phosphatase while increasing the urease activity. The biochars, particularly ATB, can be considered as effective soil amendments for reducing the phytotoxicity of Zn and Cd in contaminated soils, improving plant growth, enhancing the abundance of specific bacterial groups and increasing urease activity; however, more attention should be paid to their negative effects on the activities of β-glucosidase, dehydrogenase, and alkaline phosphatase.

Mitigation of rice cadmium (Cd) accumulation by joint application of organic amendments and selenium (Se) in high-Cd-contaminated soils

A pot experiment was conducted to investigate the possible mediatory effect of organic amendments (vermicompost and biochar) and selenium (Se) on Cd bioaccumulation in both rice cultivars (high-Cd accumulation rice: Yuzhenxiang (YZX) and low-Cd accumulation rice: Changliangyou772 (CLY)) in high-Cd-contaminated soils. The results showed that Cd sensitivity and tolerance were cultivar-dependent, and grain Cd contents for CLY accorded with the Chinese national food safety standards (0.2 mg kg^-1), whereas grain Cd levels for YZX were 1.4-5.8 times higher than those for CLY. Soil applications of amendments decreased grain Cd levels by 3.5%-36.9% for YZX and 36.1%-74.4% for CLY. Moreover, vermicompost (VC) was more effective in reducing Cd bioaccumulation than biochar (BC). A combination of Se and organic amendments could significantly increase grain Se contents and help further reduce grain Cd levels by 5.8%-20.8%, compared to the single organic amendments. This mitigation progress could be attributed to the changes of Cd translocation and distribution among rice tissues and the inhibition of Cd bioavailability in soil through the alteration in soil properties. Organic amendments, especially high dose (5%), increased soil pH and organic matter contents, and correspondingly decreased soil Cd bioavailability. A sequential extraction analysis suggested that organic amendments and Se facilitated the transformation of soil Cd from the bioavailable form to the immobilized Cd form, and thus decreased grain Cd levels. Hence, co-applications of organic amendments and Se in combination with low-Cd accumulation cultivar could be an effective strategy for both Se needs of humans and safe utilization of Cd polluted soil.

Combined Effect of Ferrous Ion and Biochar on Cadmium and Arsenic Accumulation in Rice

Excessive accumulation of cadmium (Cd) and arsenic (As) in rice (Oryza sativa L.) poses a potential health risk to populations. Cd and As exhibit opposite geochemical behavior in paddy soil, using appropriate remediation materials to reduce their migration and inhibit their uptake by rice is a great challenge. A pot culture experiment was conducted to investigate the effects of application of silkworm excrement biochar (BC) and ferrous sulfate (Fe(II)) on available Cd and As in paddy soils and their uptake by rice. Results showed that the application of BC + Fe significantly accelerated the tillering of rice plants, and the addition of BC alone to soil did not have a significant effect on the pH of soil, while applied 1% (w/w) BC and 1% (w/w) Fe(II) (1BC-1 Fe(II)) treatment could markedly reduce the soil pH. BC+Fe(II) could reduce the content of available Cd (reduced by 10%–23%) and As (reduced by 6%–33%) in soil. BC+Fe(II) has a distinct decreasing effect on the available As, thus inhibiting As uptake in rice tissues, and the effect was more obvious with an increasing mass ratio of Fe in BC+Fe(II) treatment. BC+Fe(II) decreased bioaccumulation factors (BF) of As compared to control and BC alone treatments. Compared with As, Cd was more readily transferred from the root to the shoot and accumulated in rice eventually. These findings provide a safe and reliable remediation strategy though application of BC+Fe(II) in Cd and As co-contaminated soil. However, the improvement effect of amendments should be paid a special attention on soil pH.

The Impact of Soil-Applied Biochars From Different Vegetal Feedstocks on Durum Wheat Plant Performance and Rhizospheric Bacterial Microbiota in Low Metal-Contaminated Soil

Biochar shapes the soil environment and plant growth. Nevertheless, the mechanisms associated with an improved plant biomass and soil microbiome in low metal-contaminated soils are still unclear. In this study, the influence of biochar on soil physico-chemical properties, plant performance, and rhizosphere microbiota in durum wheat was investigated at the above- and belowground levels. Two kinds of biochar from different feedstocks (wood chips and wheat straw pellets) and two Italian durum wheat varieties, Duilio and Marco Aurelio, were analyzed in a greenhouse using a low-nutrient gleyic fluvisol containing a very small amount of Pb and Zn. Four different treatments were performed: soil-only control (C), soil amended with woody biochar equilibrated with nutrient solution (B1+) and non-activated (B1−), and soil amended with non-activated (B2−) wheat straw biochar. Seven weeks after seed germination, (1) the physico-chemical properties of soil, biochars, and mixtures were assessed; (2) the fresh and dry weight of aboveground plant tissues and roots and other morphometric traits were measured; and (3) metabarcoding of the 16S rRNA bacterial gene was performed on rhizosphere soil samples. The results showed that the biochar from wheat straw had stronger impact on both durum varieties, with higher electrical conductivity, higher levels of available K and Na, and a substantial increase of dissolved Na+, K+, and Cl− ions in pore water. Generally, biochar amendment decreased Zn availability for the plants. In addition, biochar improved plant growth in the early growth stage, and the more positive effect was achieved by combining wheat straw biochar with Marco Aurelio. Rhizosphere bacterial microbiota showed variation in alpha diversity only due to treatment; on the other hand, the differential analysis showed consistent variation among samples with significant effects on amplicon sequence variant (ASV) abundance due to the specific biochar treatment as well as the genotype. The pure B1−, due to its scarce nutrient content with respect to the richer types (B1+ and B2−), had a negative impact on microbiota richness. Our study highlights that an appropriate combination of biochar feedstock and crop species may lead to superior yield.

Simultaneous in-situ remediation and fertilization of Cd-contaminated weak-alkaline farmland for wheat production

In-situ remediation of heavy metal-contaminated farmland mainly focuses on acidic soil, however, weak-alkaline farmland widely exists in north China. Meanwhile, fertilization is usually ignored, but it may influence remediation efficiency as well as grain production. In this paper, field experiments were carried out to investigate in-situ simultaneous remediation and fertilization of Cd-contaminated weak-alkaline soil by microbial agent mixed with fulvic acid (MFA), wheat straw biochar, sepiolite and their mixture. Results showed that addition of these conditioners decreased the soil available Cd by 39.86%-71.33% and the wheat Cd by 41.94%-87.10%. The decrease order of soil available Cd followed sepiolite > mixture > biochar > MFA, while the decrease order of wheat Cd was mixture > sepiolite > biochar > MFA. With addition of mixture, the wheat Cd reduced to 0.08 mg/kg, lower than the Cd limit of 0.1 mg/kg in Contaminant Limit in Food of National Food Safety Standards (GB2762-2017), and the highest wheat yield reached 7590 kg/hm². The MFA had significant effects on improvement of soil organic matters, nutrients and rhizosphere microbes; the biochar was prominent in improving soil organic matters, inhibiting wheat Cd and soil available Cd; the sepiolite had obvious advantages in reducing wheat Cd and soil available Cd; and the mixture had a more balanced effect on soil remediation and fertilization. Correlation study showed that soil available Cd significantly affected the uptake of Cd by wheat, and wheat yield was significantly positively correlated with soil organic matters, available N. Therefore, reducing soil available Cd, increasing soil organic matters and nutrients are the keys to simultaneous remediation and fertilization of Cd-contaminated weak-alkaline soil for wheat production.

The Impact of Soil-Applied Biochars From Different Vegetal Feedstocks on Durum Wheat Plant Performance and Rhizospheric Bacterial Microbiota in Low Metal-Contaminated Soil

Biochar shapes the soil environment and plant growth. Nevertheless, the mechanisms associated with an improved plant biomass and soil microbiome in low metal-contaminated soils are still unclear. In this study, the influence of biochar on soil physico-chemical properties, plant performance, and rhizosphere microbiota in durum wheat was investigated at the above- and belowground levels. Two kinds of biochar from different feedstocks (wood chips and wheat straw pellets) and two Italian durum wheat varieties, Duilio and Marco Aurelio, were analyzed in a greenhouse using a low-nutrient gleyic fluvisol containing a very small amount of Pb and Zn. Four different treatments were performed: soil-only control (C), soil amended with woody biochar equilibrated with nutrient solution (B1+) and non-activated (B1-), and soil amended with non-activated (B2-) wheat straw biochar. Seven weeks after seed germination, (1) the physico-chemical properties of soil, biochars, and mixtures were assessed; (2) the fresh and dry weight of aboveground plant tissues and roots and other morphometric traits were measured; and (3) metabarcoding of the 16S rRNA bacterial gene was performed on rhizosphere soil samples. The results showed that the biochar from wheat straw had stronger impact on both durum varieties, with higher electrical conductivity, higher levels of available K and Na, and a substantial increase of dissolved Na+, K+, and Cl- ions in pore water. Generally, biochar amendment decreased Zn availability for the plants. In addition, biochar improved plant growth in the early growth stage, and the more positive effect was achieved by combining wheat straw biochar with Marco Aurelio. Rhizosphere bacterial microbiota showed variation in alpha diversity only due to treatment; on the other hand, the differential analysis showed consistent variation among samples with significant effects on amplicon sequence variant (ASV) abundance due to the specific biochar treatment as well as the genotype. The pure B1-, due to its scarce nutrient content with respect to the richer types (B1+ and B2-), had a negative impact on microbiota richness. Our study highlights that an appropriate combination of biochar feedstock and crop species may lead to superior yield.