1
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Yan D, Han Y, Zhong M, Wen H, An Z, Capo E. Historical trajectories of antibiotics resistance genes assessed through sedimentary DNA analysis of a subtropical eutrophic lake. ENVIRONMENT INTERNATIONAL 2024; 186:108654. [PMID: 38621322 DOI: 10.1016/j.envint.2024.108654] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/22/2024] [Revised: 03/13/2024] [Accepted: 04/10/2024] [Indexed: 04/17/2024]
Abstract
Investigating the occurrence of antibiotic-resistance genes (ARGs) in sedimentary archives provides opportunities for reconstructing the distribution and dissemination of historical (i.e., non-anthropogenic origin) ARGs. Although ARGs in freshwater environments have attracted great attention, historical variations in the diversity and abundance of ARGs over centuries to millennia remain largely unknown. In this study, we investigated the vertical change patterns of bacterial communities, ARGs and mobile genetic elements (MGEs) found in sediments of Lake Chenghai spanning the past 600 years. Within resistome preserved in sediments, 177 ARGs subtypes were found with aminoglycosides and multidrug resistance being the most abundant. The ARG abundance in the upper sediment layers (equivalent to the post-antibiotic era since the 1940s) was lower than those during the pre-antibiotic era, whereas the ARG diversity was higher during the post-antibiotic era, possibly because human-induced lake eutrophication over the recent decades facilitated the spread and proliferation of drug-resistant bacteria. Statistical analysis suggested that MGEs abundance and the bacterial community structure were significantly correlated with the abundance and diversity of ARGs, suggesting that the occurrence and distribution of ARGs may be transferred between different bacteria by MGEs. Our results provide new perspectives on the natural history of ARGs in freshwater environments and are essential for understanding the temporal dynamics and dissemination of ARGs.
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Affiliation(s)
- Dongna Yan
- State Key Laboratory of Loess and Quaternary Geology, Institute of Earth Environment, Chinese Academy of Sciences, Xi'an, Shaanxi 710061, China
| | - Yongming Han
- State Key Laboratory of Loess and Quaternary Geology, Institute of Earth Environment, Chinese Academy of Sciences, Xi'an, Shaanxi 710061, China; National Observation and Research Station of Regional Ecological Environment Change and Comprehensive Management in the Guanzhong Plain, Xi'an, Shaanxi 710061, China.
| | - Meifang Zhong
- Department of Ecology and Environmental Science, Umeå University, Linnaeus väg 4-6, 907 36 Umeå, Sweden
| | - Hanfeng Wen
- State Key Laboratory of Loess and Quaternary Geology, Institute of Earth Environment, Chinese Academy of Sciences, Xi'an, Shaanxi 710061, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Zhisheng An
- State Key Laboratory of Loess and Quaternary Geology, Institute of Earth Environment, Chinese Academy of Sciences, Xi'an, Shaanxi 710061, China
| | - Eric Capo
- Department of Ecology and Environmental Science, Umeå University, Linnaeus väg 4-6, 907 36 Umeå, Sweden.
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2
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Peng K, Liu X, Cheng H, Xu M, Liu Y, Yang H, Liu P, Yang S. Characterization of driving factors for the long-term succession of bloom-forming cyanobacterial genera in Lake Erhai, southwest China. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2024; 351:119729. [PMID: 38056335 DOI: 10.1016/j.jenvman.2023.119729] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/31/2023] [Revised: 10/25/2023] [Accepted: 11/25/2023] [Indexed: 12/08/2023]
Abstract
Cyanobacterial blooms pose a global environmental concern, with various genera contributing to their formation. The harmfulness of cyanobacterial blooms varies depending on the specific genus, yet the factors triggering their formation remain incompletely understood. This study conducted qPCR of sediment DNA in Lake Erhai to reconstruct the historical succession of three common bloom-forming cyanobacterial genera (i.e., Microcystis, Dolichospermum, and Aphanizomenon). The driving factors and their corresponding thresholds were identified, and human activities related to driving factors were evaluated. The results revealed two successions in the past century. The first succession transitioned from Aphanizomenon (1902-1978) to Microcystis and Dolichospermum (1978-1999), driven by TN:TP and TP. The second succession shifted from Microcystis and Dolichospermum (1978-1999) to Microcystis (1999-2010), driven by TP, TN:TP, and temperature. The thresholds of TP and TN:TP for the Microcystis bloom were 0.023 mg/L and 17, respectively. TN:TP was significantly influenced by domestic pollution and crop farming in both successions, while TP was significantly impacted by domestic pollution in the first succession and by pollution from crop and dairy farming in the second succession. These results shed light on the underlying mechanism responsible for the blooms of various cyanobacterial genera and could serve as a valuable reference for effectively preventing and controlling nutrient input in the watershed.
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Affiliation(s)
- Kaida Peng
- School of Life Sciences, Central China Normal University, Wuhan, 430079, China
| | - Xiaofeng Liu
- School of Life Sciences, Central China Normal University, Wuhan, 430079, China
| | - Hu Cheng
- School of Life Sciences, Central China Normal University, Wuhan, 430079, China
| | - Min Xu
- School of Life Sciences, Central China Normal University, Wuhan, 430079, China
| | - Yi Liu
- School of Life Sciences, Central China Normal University, Wuhan, 430079, China
| | - Hongyan Yang
- School of Life Sciences, Central China Normal University, Wuhan, 430079, China
| | - Pan Liu
- School of Life Sciences, Central China Normal University, Wuhan, 430079, China
| | - Shao Yang
- School of Life Sciences, Central China Normal University, Wuhan, 430079, China.
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3
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Jing M, Yang W, Ding X, Rao L, Zhang Q, Zhu J. Environmental heterogeneity associated with boat activity shapes bacteria and microeukaryotic communities with discrepant response patterns. THE SCIENCE OF THE TOTAL ENVIRONMENT 2023; 903:166943. [PMID: 37690748 DOI: 10.1016/j.scitotenv.2023.166943] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/07/2023] [Revised: 09/07/2023] [Accepted: 09/07/2023] [Indexed: 09/12/2023]
Abstract
With the development of global tourism, tourist boats, a significant form of anthropogenic disturbance, are having an increasingly serious impact on the structure and function of aquatic ecosystems. In this study, the effects of different intensities of tourist boat activities on the microbial communities of West lake, were investigated by high-throughput sequencing. The results showed significant differences in the composition of bacterioplankton and microeukaryotic communities between the high-intensity boat activity (HIBA) area and low-intensity boat activity (LIBA) area. Variation partitioning analysis showed that environmental factors contributed the most to microbial community variation, and the effect of boat activities on microbial communities mainly occurred through coupling with environmental factors. The contribution of boat activity to microbial community changes occupies the second place, the first being environmental factors. Co-occurrence network analyses showed that microbial communities in the HIBA area had more nodes and edges, higher connectivity and lower modularity than in the LIBA area, suggesting a more complex and stable network. Networks of associations between potential keystone taxa and environmental factors reveal the way in which boat activity affects microbial communities. The bacterial community responded strongly to environmental factors associated with boat activities, whereas the microeukaryotic community was more likely to be regulated by interspecific interactions. This also suggests that when faced with disturbances from the boat activity, microeukaryotes might exert a stronger direct resistance effect compared to bacterioplankton. These findings imply that bacterioplankton and microeukaryotes demonstrate distinct response patterns in the presence of disturbance caused by boat activity. Our research expand our understanding of the effects of boat activities on aquatic ecosystems and provide further insights into the assessment of anthropogenic disturbances in aquatic ecosystems.
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Affiliation(s)
- MingFei Jing
- School of Marine Science, Ningbo University, Ningbo 315800, China
| | - Wen Yang
- School of Marine Science, Ningbo University, Ningbo 315800, China
| | - Xiuying Ding
- Hangzhou West Lake Administration, Hangzhou 310002, China
| | - Lihua Rao
- Hangzhou West Lake Administration, Hangzhou 310002, China
| | - Quanxiang Zhang
- School of Marine Science, Ningbo University, Ningbo 315800, China
| | - Jinyong Zhu
- School of Marine Science, Ningbo University, Ningbo 315800, China.
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4
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Eastwood N, Zhou J, Derelle R, Abdallah MAE, Stubbings WA, Jia Y, Crawford SE, Davidson TA, Colbourne JK, Creer S, Bik H, Hollert H, Orsini L. 100 years of anthropogenic impact causes changes in freshwater functional biodiversity. eLife 2023; 12:RP86576. [PMID: 37933221 PMCID: PMC10629823 DOI: 10.7554/elife.86576] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2023] Open
Abstract
Despite efforts from scientists and regulators, biodiversity is declining at an alarming rate. Unless we find transformative solutions to preserve biodiversity, future generations may not be able to enjoy nature's services. We have developed a conceptual framework that establishes the links between biodiversity dynamics and abiotic change through time and space using artificial intelligence. Here, we apply this framework to a freshwater ecosystem with a known history of human impact and study 100 years of community-level biodiversity, climate change and chemical pollution trends. We apply explainable network models with multimodal learning to community-level functional biodiversity measured with multilocus metabarcoding, to establish correlations with biocides and climate change records. We observed that the freshwater community assemblage and functionality changed over time without returning to its original state, even if the lake partially recovered in recent times. Insecticides and fungicides, combined with extreme temperature events and precipitation, explained up to 90% of the functional biodiversity changes. The community-level biodiversity approach used here reliably explained freshwater ecosystem shifts. These shifts were not observed when using traditional quality indices (e.g. Trophic Diatom Index). Our study advocates the use of high-throughput systemic approaches on long-term trends over species-focused ecological surveys to identify the environmental factors that cause loss of biodiversity and disrupt ecosystem functions.
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Affiliation(s)
- Niamh Eastwood
- Environmental Genomics Group, School of Biosciences, University of BirminghamBirminghamUnited Kingdom
| | - Jiarui Zhou
- Environmental Genomics Group, School of Biosciences, University of BirminghamBirminghamUnited Kingdom
| | - Romain Derelle
- Environmental Genomics Group, School of Biosciences, University of BirminghamBirminghamUnited Kingdom
| | | | - William A Stubbings
- Environmental Genomics Group, School of Biosciences, University of BirminghamBirminghamUnited Kingdom
- School of Geography, Earth & Environmental Sciences, University of BirminghamBirminghamUnited Kingdom
| | - Yunlu Jia
- Department Evolutionary Ecology & Environmental Toxicology, Faculty of Biological Sciences, Goethe University FrankfurtFrankfurtGermany
| | - Sarah E Crawford
- Department Evolutionary Ecology & Environmental Toxicology, Faculty of Biological Sciences, Goethe University FrankfurtFrankfurtGermany
| | - Thomas A Davidson
- Lake Group, Department of Ecoscience, Aarhus UniversityAarhusDenmark
| | - John K Colbourne
- Environmental Genomics Group, School of Biosciences, University of BirminghamBirminghamUnited Kingdom
| | - Simon Creer
- School of Natural Sciences, Environment Centre Wales, Deiniol Road, Bangor UniversityBangorUnited Kingdom
| | - Holly Bik
- Department Marine Sciences and Institute of Bioinformatics, University of GeorgiaAthensUnited States
| | - Henner Hollert
- Department Evolutionary Ecology & Environmental Toxicology, Faculty of Biological Sciences, Goethe University FrankfurtFrankfurtGermany
- LOEWE Centre for Translational Biodiversity Genomics (LOEWE‐TBG)FrankfurtGermany
- Department Media-related Toxicology, Institute for Molecular Biology and Applied Ecology (IME)FrankfurtGermany
| | - Luisa Orsini
- Environmental Genomics Group, School of Biosciences, University of BirminghamBirminghamUnited Kingdom
- The Alan Turing Institute, British LibraryLondonUnited Kingdom
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5
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Wang Y, Du R, Cao X, Yu H, Xu Y, Yu Y, Peng J. Evaporation dominates the loss of plateau lake in Southwest China using water isotope balance assessment. THE SCIENCE OF THE TOTAL ENVIRONMENT 2023; 873:162415. [PMID: 36822415 DOI: 10.1016/j.scitotenv.2023.162415] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/13/2022] [Revised: 01/18/2023] [Accepted: 02/19/2023] [Indexed: 06/18/2023]
Abstract
The water balance budget in remote plateau lakes provides a fundamental information on the local climate-hydrological pattern. However, integrated investigation on the waters entering the lake, especially groundwater, was limited. To assess the current climate stress on Yunnan-Guizhou Plateau lakes, we collected rivers, groundwater, lake, and precipitation with varying isotopic compositions in the Chenghai Lake basin over four separate campaigns during a hydrological year. The wide and enriched variation of isotope composition in rivers, groundwater, and lake indicate that they have undergone distinct evaporations, which further reveal the recharging and mixing processes. Based on the similar isotopic signals between rivers and precipitation, rivers can serve as proxies for precipitation. Groundwater was primarily replenished by high mountain precipitation duo to the stable isotopic values in aquifers. Even through mass water in lake was able to smooth out some variability, the considerable isotopic variation of lake during the four collections suggested the influence of meteorological conditions. According to the assessment of isotope balance model, lake evaporation accounts for almost 65 % of the total inflow for one year, which partially explains the climate stress on the lake level. As the most sensitive variables, changes in relative humidity (h) and isotope composition of atmospheric moisture (δA) resulted in remarkable variations in E/I ratios and the constructed water isotope framework. These results shed light on the capacity of evaporation relative to lake input and provide interpretations on local paleoclimate and predicted-climate construction.
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Affiliation(s)
- Yajun Wang
- State Key Laboratory of Environmental Criteria and Risk Assessment, Chinese Research Academy of Environmental Sciences, Beijing 100012, China; Center for Water and Ecology, State Key Joint Laboratory of Environment Simulation and Pollution Control, School of Environment, Tsinghua University, Beijing 100084, China
| | - Ronghua Du
- Jiangsu Key Laboratory of Anaerobic Biotechnology, School of Environment and Civil Engineering, Jiangnan University, Wuxi, Jiangsu Province 214122, China
| | - Xiaofeng Cao
- Center for Water and Ecology, State Key Joint Laboratory of Environment Simulation and Pollution Control, School of Environment, Tsinghua University, Beijing 100084, China
| | - Hongwei Yu
- State Key Laboratory of Environmental Aquatic Chemistry, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, China
| | - Yan Xu
- College of Marine Science and Technology, China University of Geosciences, Wuhan 430074, China
| | - Yilei Yu
- Xiong'an Institute of Innovation, Chinese Academy of Sciences, Xiong'an 071899, China.
| | - Jianfeng Peng
- Center for Water and Ecology, State Key Joint Laboratory of Environment Simulation and Pollution Control, School of Environment, Tsinghua University, Beijing 100084, China.
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6
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Lin Q, Zhang K, McGowan S, Huang S, Xue Q, Capo E, Zhang C, Zhao C, Shen J. Characterization of lacustrine harmful algal blooms using multiple biomarkers: Historical processes, driving synergy, and ecological shifts. WATER RESEARCH 2023; 235:119916. [PMID: 37003114 DOI: 10.1016/j.watres.2023.119916] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/07/2022] [Revised: 03/23/2023] [Accepted: 03/24/2023] [Indexed: 06/19/2023]
Abstract
Harmful algal blooms (HABs) producing toxic metabolites are increasingly threatening environmental and human health worldwide. Unfortunately, long-term process and mechanism triggering HABs remain largely unclear due to the scarcity of temporal monitoring. Retrospective analysis of sedimentary biomarkers using up-to-date chromatography and mass spectrometry techniques provide a potential means to reconstruct the past occurrence of HABs. By combining aliphatic hydrocarbons, photosynthetic pigments, and cyanotoxins, we quantified herein century-long changes in abundance, composition, and variability of phototrophs, particularly toxigenic algal blooms, in China's third largest freshwater Lake Taihu. Our multi-proxy limnological reconstruction revealed an abrupt ecological shift in the 1980s characterized by elevated primary production, Microcystis-dominated cyanobacterial blooms, and exponential microcystin production, in response to nutrient enrichment, climate change, and trophic cascades. The empirical results from ordination analysis and generalized additive models support climate warming and eutrophication synergy through nutrient recycling and their feedback through buoyant cyanobacterial proliferation, which sustain bloom-forming potential and further promote the occurrence of increasingly-toxic cyanotoxins (e.g., microcystin-LR) in Lake Taihu. Moreover, temporal variability of the lake ecosystem quantified using variance and rate of change metrics rose continuously after state change, indicating increased ecological vulnerability and declined resilience following blooms and warming. With the persistent legacy effects of lake eutrophication, nutrient reduction efforts mitigating toxic HABs probably be overwhelmed by climate change effects, emphasizing the need for more aggressive and integrated environmental strategies.
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Affiliation(s)
- Qi Lin
- State Key Laboratory of Lake Science and Environment, Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences, Nanjing 210008, China
| | - Ke Zhang
- State Key Laboratory of Lake Science and Environment, Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences, Nanjing 210008, China.
| | - Suzanne McGowan
- Department of Aquatic Ecology, Netherlands Institute of Ecology, Droevendaalsesteeg 10, 6708PB Wageningen, Netherlands
| | - Shixin Huang
- State Key Laboratory of Lake Science and Environment, Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences, Nanjing 210008, China
| | - Qingju Xue
- State Key Laboratory of Lake Science and Environment, Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences, Nanjing 210008, China
| | - Eric Capo
- Department of Marine Biology, Institut de Ciències del Mar, CSIC, DC 08003 Barcelona, Spain
| | - Can Zhang
- State Key Laboratory of Lake Science and Environment, Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences, Nanjing 210008, China
| | - Cheng Zhao
- School of Geography and Oceanography Sciences, Nanjing University, Nanjing 210023, China
| | - Ji Shen
- State Key Laboratory of Lake Science and Environment, Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences, Nanjing 210008, China; School of Geography and Oceanography Sciences, Nanjing University, Nanjing 210023, China
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7
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Wang Y, Cao X, Yu H, Xu Y, Peng J, Qu J. Nitrate with enriched heavy oxygen isotope linked to changes in nitrogen source and transformation as groundwater table rises. JOURNAL OF HAZARDOUS MATERIALS 2023; 455:131527. [PMID: 37163892 DOI: 10.1016/j.jhazmat.2023.131527] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/25/2023] [Revised: 04/19/2023] [Accepted: 04/26/2023] [Indexed: 05/12/2023]
Abstract
Nitrate is a significant constituent of the total nitrogen pool in shallow aquifers and poses an escalating threat to groundwater resources, making it crucial to comprehend the source, conversion, and elimination of nitrogen using appropriate techniques. Although dual-isotope dynamics in nitrate have been widely used, uncertainties remain regarding the asynchronously temporal changes in δ18O-NO3- and δ15N-NO3- observed in hypoxic aquifers. This study aimed to investigate changes in nitrogen sources and transformations using temporal changes in field-based NO3- isotopic composition, hydro-chemical variables, and environmental DNA profiling, as the groundwater table varied. The results showed that the larger enrichment in δ18O-NO3- (+13‰) compared with δ15N-NO3- (-2‰) on average during groundwater table rise was due to a combination of factors, including high 18O-based atmospheric N deposition, canopies nitrification, and soil nitrification transported vertically by rainfalls, and 18O-enriched O2 produced through microbial and root respiration within denitrification. The strong association between functional gene abundance and nitrogen-related indicators suggests that anammox was actively processed with nitrification but in small bacterial population during groundwater table rise. Furthermore, bacterial species associated with nitrogen-associated gradients provided insight into subsurface nitrogen transformation, with Burkholderiaceae species and Pseudorhodobacter potentially serving as bioindicators of denitrification, while Candidatus Nitrotogn represents soil nitrification. Fluctuating groundwater tables can cause shifts in hydro-chemical and isotopic composition, which in turn can indicate changes in nitrogen sources and transformations. These changes can be used to improve input sources for mixture models and aid in microbial remediation of nitrate.
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Affiliation(s)
- Yajun Wang
- State Key Laboratory of Environmental Criteria and Risk Assessment, and State Environmental Protection Key Laboratory of Simulation and Control of Groundwater Pollution, Chinese Research Academy of Environmental Sciences, Beijing 100012, China; Center for Water and Ecology, State Key Joint Laboratory of Environment Simulation and Pollution Control, School of Environment, Tsinghua University, Beijing 100084, China
| | - Xiaofeng Cao
- Center for Water and Ecology, State Key Joint Laboratory of Environment Simulation and Pollution Control, School of Environment, Tsinghua University, Beijing 100084, China
| | - Hongwei Yu
- State Key Laboratory of Environmental Aquatic Chemistry, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, China
| | - Yan Xu
- College of Marine Science and Technology, China University of Geosciences, Wuhan 430074, China
| | - Jianfeng Peng
- Center for Water and Ecology, State Key Joint Laboratory of Environment Simulation and Pollution Control, School of Environment, Tsinghua University, Beijing 100084, China
| | - Jiuhui Qu
- Center for Water and Ecology, State Key Joint Laboratory of Environment Simulation and Pollution Control, School of Environment, Tsinghua University, Beijing 100084, China; State Key Laboratory of Environmental Aquatic Chemistry, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, China
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8
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Zhou Y, Lian Y, Liu T, Jin X, Wang Z, Liu X, Zhou M, Jing D, Yin W, Feng J, Wang H, Zhang D. Impacts of high-quality coal mine drainage recycling for replenishment of aquatic ecosystems in arid regions of China: Bacterial community responses. ENVIRONMENTAL RESEARCH 2023; 223:115083. [PMID: 36529333 DOI: 10.1016/j.envres.2022.115083] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/28/2022] [Revised: 12/05/2022] [Accepted: 12/14/2022] [Indexed: 06/17/2023]
Abstract
Coal mine water is usually recycled as supplementary water for aquatic ecosystems in arid and semiarid mining regions of China. To ensure ecosystem health, the coal mine water is rigorously treated using several processes, including reverse osmosis, to meet surface water quality standards. However, the potential environmental impacts of this management pattern on the ecological function of receiving water bodies are unclear. In this study, we built several microcosm water ecosystems to simulate the receiving water bodies. High-quality treated coal mine drainage was mixed into the model water bodies at different concentrations, and the sediment bacterial community response and functional changes were systematically investigated. The results showed that the high-quality coal mine drainage could still shape bacterial taxonomic diversity, community composition and structure, with a concentration threshold of approximately 50%. Moreover, both the Mantel test and the structural equation model indicated that the salinity fluctuation caused by the receiving of coal mine drainage was the primary factor shaping the bacterial communities. 10 core taxa in the molecular ecological network influenced by coal mine drainage were identified, with the most critical taxa being patescibacteria and g_Geothermobacter. Furthermore, the pathway of carbohydrate metabolism as well as signaling molecules and interactions was up-regulated, whereas amino acid metabolism showed the opposite trend. All results suggested that the complex physical-chemical and biochemical processes in water ecosystems may be affected by the coal mine drainage. The bacterial community response and underlying functional changes may accelerate internal nutrient cycling, which may have a potential impact on algal bloom outbreaks.
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Affiliation(s)
- Yaqian Zhou
- School of Water Resources and Environment, China University of Geosciences (Beijing), Beijing, 100083, PR China; Jiangsu Collaborative Innovation Center of Technology and Material of Water Treatment, Suzhou University of Science and Technology, Suzhou, Jiangsu, 215009, PR China
| | - Ying Lian
- School of Water Resources and Environment, China University of Geosciences (Beijing), Beijing, 100083, PR China
| | - Tengxiang Liu
- School of Water Resources and Environment, China University of Geosciences (Beijing), Beijing, 100083, PR China
| | - Xian Jin
- School of Water Resources and Environment, China University of Geosciences (Beijing), Beijing, 100083, PR China
| | - Zhigang Wang
- School of Water Resources and Environment, China University of Geosciences (Beijing), Beijing, 100083, PR China
| | - Xin Liu
- School of Water Resources and Environment, China University of Geosciences (Beijing), Beijing, 100083, PR China
| | - Mengling Zhou
- School of Water Resources and Environment, China University of Geosciences (Beijing), Beijing, 100083, PR China
| | - Dan Jing
- School of Water Resources and Environment, China University of Geosciences (Beijing), Beijing, 100083, PR China
| | - Weiwen Yin
- School of Water Resources and Environment, China University of Geosciences (Beijing), Beijing, 100083, PR China
| | - Jiaying Feng
- School of Water Resources and Environment, China University of Geosciences (Beijing), Beijing, 100083, PR China
| | - Heli Wang
- School of Water Resources and Environment, China University of Geosciences (Beijing), Beijing, 100083, PR China; Jiangsu Collaborative Innovation Center of Technology and Material of Water Treatment, Suzhou University of Science and Technology, Suzhou, Jiangsu, 215009, PR China.
| | - Daxin Zhang
- Beijing Key Lab for Source Control Technology of Water Pollution, College of Environmental Science and Engineering, Beijing Forestry University, Beijing, 100083, PR China; School of Soil & Water Conservation, Beijing Forestry University, Beijing, 100083, PR China.
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9
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Zhang J, Shi K, Paerl HW, Rühland KM, Yuan Y, Wang R, Chen J, Ge M, Zheng L, Zhang Z, Qin B, Liu J, Smol JP. Ancient DNA reveals potentially toxic cyanobacteria increasing with climate change. WATER RESEARCH 2023; 229:119435. [PMID: 36481704 DOI: 10.1016/j.watres.2022.119435] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/28/2022] [Revised: 11/24/2022] [Accepted: 11/26/2022] [Indexed: 06/17/2023]
Abstract
Cyanobacterial blooms in freshwater systems are a global threat to human and aquatic ecosystem health, exhibiting particularly harmful effects when toxin-producing taxa are present. While climatic change and nutrient over-enrichment control the global expansion of total cyanobacterial blooms, it remains unknown to what extent this expansion reflected cyanobacterial assemblage due to the scarcity of long-term monitoring data. Here we use high-throughput sequencing of sedimentary DNA to track ∼100 years of changes in cyanobacterial community in hyper-eutrophic Lake Taihu, China's third largest freshwater lake and the key water source for ∼30 million people. A steady increase in the abundance of Microcystis (as potential toxin producers) during the past thirty years was correlated with increasing temperatures and declining wind speeds, but not with temporal trends in lakewater nutrient concentrations, highlighting recent climate effects on potentially increasing toxin-producing taxa. The socio-environmental repercussions of these findings are worrisome as continued anthropogenic climate change may counteract nutrient amelioration efforts in this critical freshwater resource.
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Affiliation(s)
- Jifeng Zhang
- Research Center for Ecology, College of Science, Tibet University, Lhasa 850000, China; Group of Alpine Paleoecology and Human Adaptation (ALPHA), State Key Laboratory of Tibetan Plateau Earth System, Resources and Environment (TPESRE), Institute of Tibetan Plateau Research, Chinese Academy of Sciences, Beijing, 100101, China
| | - Kun Shi
- State Key Laboratory of Lake Science and Environment, Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences, Nanjing, 210008, China.
| | - Hans W Paerl
- Institute of Marine Sciences, University of North Carolina at Chapel Hill, Morehead City, NC, 28557, USA
| | - Kathleen M Rühland
- Paleoecological Environmental Assessment and Research Lab (PEARL), Department of Biology, Queen's University, Kingston, ON K7L 3N6, Canada
| | - Yanli Yuan
- Group of Alpine Paleoecology and Human Adaptation (ALPHA), State Key Laboratory of Tibetan Plateau Earth System, Resources and Environment (TPESRE), Institute of Tibetan Plateau Research, Chinese Academy of Sciences, Beijing, 100101, China
| | - Rong Wang
- State Key Laboratory of Lake Science and Environment, Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences, Nanjing, 210008, China
| | - Jie Chen
- Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan, 430072, China
| | - Mengjuan Ge
- Research Center for Ecology, College of Science, Tibet University, Lhasa 850000, China
| | - Lingling Zheng
- Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan, 430072, China
| | - Zhiping Zhang
- Key Laboratory of Western China's Environmental Systems (Ministry of Education), College of Earth and Environmental Sciences, Lanzhou University, Lanzhou, 730000, China
| | - Boqiang Qin
- State Key Laboratory of Lake Science and Environment, Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences, Nanjing, 210008, China
| | - Jianbao Liu
- Group of Alpine Paleoecology and Human Adaptation (ALPHA), State Key Laboratory of Tibetan Plateau Earth System, Resources and Environment (TPESRE), Institute of Tibetan Plateau Research, Chinese Academy of Sciences, Beijing, 100101, China
| | - John P Smol
- Paleoecological Environmental Assessment and Research Lab (PEARL), Department of Biology, Queen's University, Kingston, ON K7L 3N6, Canada
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Chen J, Liu H, Bai Y, Qi J, Qi W, Liu H, Peng J, Qu J. Mixing regime shapes the community assembly process, microbial interaction and proliferation of cyanobacterial species Planktothrix in a stratified lake. J Environ Sci (China) 2022; 115:103-113. [PMID: 34969441 DOI: 10.1016/j.jes.2021.07.001] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/12/2021] [Revised: 07/04/2021] [Accepted: 07/05/2021] [Indexed: 06/14/2023]
Abstract
Lake mixing influences aquatic chemical properties and microbial community composition, and thus, we hypothesized that it would alter microbial community assembly and interaction. To clarify this issue, we explored the community assembly processes and cooccurrence networks in four seasons at two depths (epilimnion and hypolimnion) in a mesotrophic and stratified lake (Chenghai Lake), which formed stratification in the summer and turnover in the winter. During the stratification period, the epilimnion and hypolimnion went through contrary assembly processes but converged to similar assembly patterns in the mixing period. In a highly homogeneous selection environment, species with low niche breadth were filtered, resulting in decreased species richness. Water mixing in the winter homogenized the environment, resulting in a simpler microbial cooccurrence network. Interestingly, we observed a high abundance of the cyanobacterial genus Planktothrix in the winter, probably due to nutrient redistribution and Planktothrix adaptivity to the winter environment in which mixing played important roles. Our study provides deeper fundamental insights into how environmental factors influence microbial community structure through community assembly processes.
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Affiliation(s)
- Junwen Chen
- Center for Water and Ecology, State Key Joint Laboratory of Environment Simulation and Pollution Control, School of Environment, Tsinghua University, Beijing 100084, China
| | - Huacong Liu
- Key Laboratory of Drinking Water Science and Technology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, China
| | - Yaohui Bai
- Key Laboratory of Drinking Water Science and Technology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, China
| | - Jing Qi
- Key Laboratory of Drinking Water Science and Technology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, China
| | - Weixiao Qi
- Center for Water and Ecology, State Key Joint Laboratory of Environment Simulation and Pollution Control, School of Environment, Tsinghua University, Beijing 100084, China
| | - Huijuan Liu
- Center for Water and Ecology, State Key Joint Laboratory of Environment Simulation and Pollution Control, School of Environment, Tsinghua University, Beijing 100084, China
| | - Jianfeng Peng
- Center for Water and Ecology, State Key Joint Laboratory of Environment Simulation and Pollution Control, School of Environment, Tsinghua University, Beijing 100084, China
| | - Jiuhui Qu
- Center for Water and Ecology, State Key Joint Laboratory of Environment Simulation and Pollution Control, School of Environment, Tsinghua University, Beijing 100084, China; Key Laboratory of Drinking Water Science and Technology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, China.
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Tanvir RU, Hu Z, Zhang Y, Lu J. Cyanobacterial community succession and associated cyanotoxin production in hypereutrophic and eutrophic freshwaters. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2021; 290:118056. [PMID: 34488165 PMCID: PMC8547520 DOI: 10.1016/j.envpol.2021.118056] [Citation(s) in RCA: 20] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/07/2021] [Revised: 08/01/2021] [Accepted: 08/24/2021] [Indexed: 05/06/2023]
Abstract
Cyanobacterial harmful algal blooms (cyanoHABs) in freshwater bodies are mainly attributed to excess loading of nutrients [nitrogen (N) and phosphorus (P)]. This study provides a comprehensive review of how the existing nutrient (i.e., N and P) conditions and microbial ecological factors affect cyanobacterial community succession and cyanotoxin production in freshwaters. Different eutrophic scenarios (i.e., hypereutrophic vs. eutrophic conditions) in the presence of (i) high levels of N and P, (ii) a relatively high level of P but a low level of N, and (iii) a relatively high level of N but a low level of P, are discussed in association with cyanobacterial community succession and cyanotoxin production. The seasonal cyanobacterial community succession is mostly regulated by temperature in hypereutrophic freshwaters, where both temperature and nitrogen fixation play a critical role in eutrophic freshwaters. While the early cyanoHAB mitigation strategies focus on reducing P from water bodies, many more studies show that both N and P have a profound contribution to cyanobacterial blooms and toxin production. The availability of N often shapes the structure of the cyanobacterial community (e.g., the relative abundance of N2-fixing and non-N2-fixing cyanobacterial genera) and is positively linked to the levels of microcystin. Ecological aspects of cyanotoxin production and release, related functional genes, and corresponding nutrient and environmental conditions are also elucidated. Research perspectives on cyanoHABs and cyanobacterial community succession are discussed and presented with respect to the following: (i) role of internal nutrients and their species, (ii) P- and N-based control vs. solely P-based control of cyanoHABs, and (iii) molecular investigations and prediction of cyanotoxin production.
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Affiliation(s)
- Rahamat Ullah Tanvir
- Department of Civil and Environmental Engineering, University of Missouri, Columbia, MO, 65211, USA
| | - Zhiqiang Hu
- Department of Civil and Environmental Engineering, University of Missouri, Columbia, MO, 65211, USA
| | - Yanyan Zhang
- Department of Civil Engineering, New Mexico State University, Las Cruces, NM, 88003, USA
| | - Jingrang Lu
- Office of Research and Development, United States Environmental Protection Agency (USEPA), Cincinnati, OH, 45268, USA.
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12
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Sediment archives reveal irreversible shifts in plankton communities after World War II and agricultural pollution. Curr Biol 2021; 31:2682-2689.e7. [PMID: 33887182 DOI: 10.1016/j.cub.2021.03.079] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/29/2020] [Revised: 02/12/2021] [Accepted: 03/23/2021] [Indexed: 01/04/2023]
Abstract
To evaluate the stability and resilience1 of coastal ecosystem communities to perturbations that occurred during the Anthropocene,2 pre-industrial biodiversity baselines inferred from paleoarchives are needed.3,4 The study of ancient DNA (aDNA) from sediments (sedaDNA)5 has provided valuable information about past dynamics of microbial species6-8 and communities9-18 in relation to ecosystem variations. Shifts in planktonic protist communities might significantly affect marine ecosystems through cascading effects,19-21 and therefore the analysis of this compartment is essential for the assessment of ecosystem variations. Here, sediment cores collected from different sites of the Bay of Brest (northeast Atlantic, France) allowed ca. 1,400 years of retrospective analyses of the effects of human pollution on marine protists. Comparison of sedaDNA extractions and metabarcoding analyses with different barcode regions (V4 and V7 18S rDNA) revealed that protist assemblages in ancient sediments are mainly composed of species known to produce resting stages. Heavy-metal pollution traces in sediments were ascribed to the World War II period and coincided with community shifts within dinoflagellates and stramenopiles. After the war and especially from the 1980s to 1990s, protist genera shifts followed chronic contaminations of agricultural origin. Community composition reconstruction over time showed that there was no recovery to a Middle Ages baseline composition. This demonstrates the irreversibility of the observed shifts after the cumulative effect of war and agricultural pollutions. Developing a paleoecological approach, this study highlights how human contaminations irreversibly affect marine microbial compartments, which contributes to the debate on coastal ecosystem preservation and restoration.
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Wang Y, Tang Y, Xu Y, Yu H, Cao X, Duan G, Bi L, Peng J. Isotopic dynamics of precipitation and its regional and local drivers in a plateau inland lake basin, Southwest China. THE SCIENCE OF THE TOTAL ENVIRONMENT 2021; 763:143043. [PMID: 33131882 DOI: 10.1016/j.scitotenv.2020.143043] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/26/2020] [Revised: 10/07/2020] [Accepted: 10/10/2020] [Indexed: 06/11/2023]
Abstract
Shrinkage of plateau lakes under climate strength has drawn growing attention. Because of its intricate implication to hydro-meteorological condition and climate system, stable isotopes in precipitation (e.g. δ2Hp and δ18Op) provide us a powerful tool to understand the climate-hydrologic dynamics in shrinking lakes. However, how the regional atmospheric circulation, moisture sources and local fractionation processes drive isotopic variability from temporal to spatial scale has rarely been reported for remote plateau lakes. Hence, we collected a total of 98 rainfall samples at the south and the north shores of Chenghai lake, Yunnan-Guizhou Plateau to study the potential driving forces of precipitation isotope variability during the wet season of 2019. Based on backward trajectories of air masses obtained from HYSPLIT model, 68% of moisture came from δ18O depleted ocean (Indian Ocean, Bay of Bengal, South China Sea and Pacific Ocean), and the rainout process promoted the isotopic depletion when moisture arrived at the study basin. Evapotranspiration increased the heavy isotope ratios in precipitation originated from continents (northern China inland and western continents). The temporal dynamics of δ18Op and δ2Hp were in phase with the convection activities intensity underlined the influence from large-scale atmospheric circulation. Local meteorological factors played a secondary role in isotope variability. Precipitation amount-effect strongly affected isotope ratios while mild anti-temperature effect was observed at daily scale. Interestingly, the rainfall isotope ratios showed different mechanisms in govern at lake south shore and north shore, with a distance of 19 km in between. This south-to-north difference can be explained by either lower 1.03% sub-evaporation in the south shore or 7% of recycled moisture contributing to precipitation in the north shore. Our findings discover the driving forces for δ18Op variation and provide solid interpretations for hydro-climate change in Southwest China.
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Affiliation(s)
- Yajun Wang
- Center for Water and Ecology, School of Environment, Tsinghua University, Beijing 100084, China
| | - Yu Tang
- Natural Resources Institute Finland (LUCK), Helsinki, Finland; Faculty of Agriculture and Forestry, University of Helsinki, Helsinki, Finland
| | - Yan Xu
- Center for Water and Ecology, School of Environment, Tsinghua University, Beijing 100084, China
| | - Hongwei Yu
- Center for Water and Ecology, School of Environment, Tsinghua University, Beijing 100084, China
| | - Xiaofeng Cao
- Center for Water and Ecology, School of Environment, Tsinghua University, Beijing 100084, China
| | - Gaoqi Duan
- Center for Water and Ecology, School of Environment, Tsinghua University, Beijing 100084, China
| | - Lijiao Bi
- Center for Water and Ecology, School of Environment, Tsinghua University, Beijing 100084, China
| | - Jianfeng Peng
- Center for Water and Ecology, School of Environment, Tsinghua University, Beijing 100084, China.
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Romanis CS, Pearson LA, Neilan BA. Cyanobacterial blooms in wastewater treatment facilities: Significance and emerging monitoring strategies. J Microbiol Methods 2020; 180:106123. [PMID: 33316292 DOI: 10.1016/j.mimet.2020.106123] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/15/2020] [Revised: 12/06/2020] [Accepted: 12/08/2020] [Indexed: 12/30/2022]
Abstract
Municipal wastewater treatment facilities (WWTFs) are prone to the proliferation of cyanobacterial species which thrive in stable, nutrient-rich environments. Dense cyanobacterial blooms frequently disrupt treatment processes and the supply of recycled water due to their production of extracellular polymeric substances, which hinder microfiltration, and toxins, which pose a health risk to end-users. A variety of methods are employed by water utilities for the identification and monitoring of cyanobacteria and their toxins in WWTFs, including microscopy, flow cytometry, ELISA, chemoanalytical methods, and more recently, molecular methods. Here we review the literature on the occurrence and significance of cyanobacterial blooms in WWTFs and discuss the pros and cons of the various strategies for monitoring these potentially hazardous events. Particular focus is directed towards next-generation metagenomic sequencing technologies for the development of site-specific cyanobacterial bloom management strategies. Long-term multi-omic observations will enable the identification of indicator species and the development of site-specific bloom dynamics models for the mitigation and management of cyanobacterial blooms in WWTFs. While emerging metagenomic tools could potentially provide deep insight into the diversity and flux of problematic cyanobacterial species in these systems, they should be considered a complement to, rather than a replacement of, quantitative chemoanalytical approaches.
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Affiliation(s)
- Caitlin S Romanis
- School of Environmental and Life Sciences, University of Newcastle, Newcastle 2308, Australia
| | - Leanne A Pearson
- School of Environmental and Life Sciences, University of Newcastle, Newcastle 2308, Australia
| | - Brett A Neilan
- School of Environmental and Life Sciences, University of Newcastle, Newcastle 2308, Australia.
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