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Araújo F, Ferreira M, Monteiro I, Wosiacki W. A new species of Hypancistrus Isbrücker & Nijssen 1991 (Loricariidae, Siluriformes) from the rapids of the middle Rio Tocantins. JOURNAL OF FISH BIOLOGY 2024. [PMID: 39505832 DOI: 10.1111/jfb.15971] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/15/2024] [Revised: 09/02/2024] [Accepted: 10/02/2024] [Indexed: 11/08/2024]
Abstract
The Hypancistrus genus is recognized in the Río Orinoco basin and Rio Xingu in the Guiana and Brazilian Shields, respectively. Some of its species are important in ornamental fishing. Despite this significance, many other undescribed species are still awaiting to be named. Here we describe a new species of Hypancistrus found on bedrock in the Rio Tocantins, representing an extension of the distribution of the genus. Also, a multigene phylogeny is presented to evaluate the taxonomic position of this species concerning congeners. The new species differs from all congeners by (1) hypertrophied odontodes on cheeks reaching beyond the cleithrum, (2) a supraoccipital crest conspicuously elevated, (3) a supraorbital crest slightly convex, (4) oblique bars on the anterior part of the body, (5) a dark E-shaped mark on the snout, (6) three oblique dark bars on the anterior part of the body and horizontal vermicular bars from the pectoral girdle to the posterior insertion of the dorsal fin, (7) a thin light gray bar on the posterior of the head extending across the branchial opening, (8) a tan background color, (9) a developed suspensorium with a diminished appendix in the metapterygoid, and (10) a dentary plate robust significantly fused with the angulo-articular bone. The molecular phylogenetic results show the new species forming a group with Hypancistrus zebra (Brazilian Shield-Rio Xingu) as a clade, a sister group of a monophyletic group consisting of all congeners from the Río Orinoco.
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Affiliation(s)
- Felipe Araújo
- Postgraduate Program in Biodiversity and Evolution, Museu Paraense Emílio Goeldi, Belém, Brazil
| | - Marlon Ferreira
- Postgraduate Program in Biodiversity and Evolution, Museu Paraense Emílio Goeldi, Belém, Brazil
| | - Iann Monteiro
- Postgraduate Program in Biodiversity and Evolution, Museu Paraense Emílio Goeldi, Belém, Brazil
| | - Wolmar Wosiacki
- Postgraduate Program in Biodiversity and Evolution, Museu Paraense Emílio Goeldi, Belém, Brazil
- Museu Paraense Emílio Goeldi, Magalhães Barata, Belém, Brazil
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Chandra Segaran T, Azra MN, Piah RM, Lananan F, Téllez-Isaías G, Gao H, Torsabo D, Kari ZA, Noordin NM. Catfishes: A global review of the literature. Heliyon 2023; 9:e20081. [PMID: 37810135 PMCID: PMC10559827 DOI: 10.1016/j.heliyon.2023.e20081] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/21/2023] [Revised: 09/06/2023] [Accepted: 09/11/2023] [Indexed: 10/10/2023] Open
Abstract
This study aims to elucidate the evolution of catfish research publications over recent decades, identify emerging research clusters, examine keyword patterns, determine major contributors (including authors, organizations, and funding agencies), and analyze their collaborative networks and citation bursts on a global scale. The USA, Brazil, China, and India collectively contribute approximately 67% of the total catfish research publications, with a marked increase in prevalence since 2016. The most frequently occurring and dominant keywords are "channel catfish" and "responses," respectively. Intriguingly, our findings reveal 28 distinct article clusters, with prominent clusters including "yellow catfish," "channel catfish", "pectoral girdle," "African catfish", "Rio Sao Francisco basin," "Edwardsiella ictaluri," and "temperature mediated". Concurrently, keyword clustering generates seven main clusters: "new species", "growth performance", "heavy metal", "gonadotropin-releasing", "essential oil", and "olfactory receptor". This study further anticipates future research directions, offering fresh perspectives on the catfish literature landscape. To the best of our knowledge, this is the first article to conduct a comprehensive mapping review of catfish research publications worldwide.
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Affiliation(s)
- Thirukanthan Chandra Segaran
- Institute of Climate Adaptation and Marine Biotechnology (ICAMB), Universiti Malaysia Terengganu (UMT), Kuala Nerus, 21030, Terengganu, Malaysia
| | - Mohamad Nor Azra
- Institute of Climate Adaptation and Marine Biotechnology (ICAMB), Universiti Malaysia Terengganu (UMT), Kuala Nerus, 21030, Terengganu, Malaysia
- Research Center for Marine and Land Bioindustry, Earth Sciences and Maritime Organization, National Research and Innovation Agency (BRIN), Lombok, 83352, Indonesia
| | - Rumeaida Mat Piah
- Faculty of Fisheries and Food Science, Universiti Malaysia Terengganu (UMT), Kuala Nerus, 21030, Terengganu, Malaysia
| | - Fathurrahman Lananan
- East Coast Environmental Research Institute, Universiti Sultan Zainal Abidin (UniSZA), Gong Badak Campus, Kuala Nerus, 21300, Terengganu, Malaysia
| | | | - Huan Gao
- School of Marine Science and Fisheries, Jiangsu Ocean University, No. 59 Cangwu Road, Haizhou District, Lianyungang City, Jiangsu, China
| | - Donald Torsabo
- Faculty of Fisheries and Food Science, Universiti Malaysia Terengganu (UMT), Kuala Nerus, 21030, Terengganu, Malaysia
- Department of Fisheries and Aquaculture, Federal University of Agriculture Makurdi, Makurdi, Benue State, Nigeria
| | - Zulhisyam Abdul Kari
- Department of Agricultural Science, Faculty of Agro-Based Industry, Universiti Malaysia Kelantan, 17600, Jeli, Kelantan, Malaysia
| | - Noordiyana Mat Noordin
- Faculty of Fisheries and Food Science, Universiti Malaysia Terengganu (UMT), Kuala Nerus, 21030, Terengganu, Malaysia
- Higher Institution Centre of Excellence (HICoE), Institute of Tropical Aquaculture and Fisheries, Universiti Malaysia Terengganu, 21030, Kuala Nerus, Terengganu, Malaysia
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Nirchio Tursellino M, de Bello Cioffi M, de Menezes Cavalcante Sassi F, Deon GA, Oliveira C, Kuranaka M, Valdiviezo-Rivera J, Gonzalez VH, Rossi AR. Integrating Genomic and Chromosomal Data: A Cytogenetic Study of Transancistrus santarosensis (Loricariidae: Hypostominae) with Characterization of a ZZ/ZW Sex Chromosome System. Genes (Basel) 2023; 14:1662. [PMID: 37761802 PMCID: PMC10531053 DOI: 10.3390/genes14091662] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/11/2023] [Revised: 08/14/2023] [Accepted: 08/19/2023] [Indexed: 09/29/2023] Open
Abstract
The plecos (Loricariidae) fish represent a great model for cytogenetic investigations due to their variety of karyotypes, including diploid and polyploid genomes, and different types of sex chromosomes. In this study we investigate Transancistrus santarosensis a rare loricariid endemic to Ecuador, integrating cytogenetic methods with specimens' molecular identification by mtDNA, to describe the the species karyotype. We aim to verify whether sex chromosomes are cytologically identifiable and if they are associated with the accumulation of repetitive sequences present in other species of the family. The analysis of the karyotype (2n = 54 chromosomes) excludes recent centric fusion and pericentromeric inversion and suggests the presence of a ZZ/ZW sex chromosome system at an early stage of differentiation: the W chromosome is degenerated but is not characterized by the presence of differential sex-specific repetitive DNAs. Data indicate that although T. santarosensis has retained the ancestral diploid number of Loricariidae, it accumulated heterochromatin and shows non-syntenic ribosomal genes localization, chromosomal traits considered apomorphic in the family.
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Affiliation(s)
- Mauro Nirchio Tursellino
- Departamento de Acuicultura, Universidad Técnica de Machala, Av. Panamericana km 5.5, Vía Pasaje, Machala 070150, El Oro, Ecuador;
| | - Marcelo de Bello Cioffi
- Departamento de Genética e Evolução, Universidade Federal de São Carlos, São Carlos 13565-090, SP, Brazil; (M.d.B.C.); (F.d.M.C.S.); (G.A.D.)
| | | | - Geize Aparecida Deon
- Departamento de Genética e Evolução, Universidade Federal de São Carlos, São Carlos 13565-090, SP, Brazil; (M.d.B.C.); (F.d.M.C.S.); (G.A.D.)
| | - Claudio Oliveira
- Departamento de Biologia Estrutural e Funcional, Instituto de Biociências Universidade Estadual Paulista-UNESP, Botucatu 18618-689, SP, Brazil; (C.O.); (M.K.)
| | - Mariana Kuranaka
- Departamento de Biologia Estrutural e Funcional, Instituto de Biociências Universidade Estadual Paulista-UNESP, Botucatu 18618-689, SP, Brazil; (C.O.); (M.K.)
| | - Jonathan Valdiviezo-Rivera
- Instituto Nacional de Biodiversidad, Rumipamba No. 341 y Av. Shyris, Parque La Carolina, Quito 170135, Pichincha, Ecuador;
| | - Víctor Hugo Gonzalez
- Departamento de Acuicultura, Universidad Técnica de Machala, Av. Panamericana km 5.5, Vía Pasaje, Machala 070150, El Oro, Ecuador;
| | - Anna Rita Rossi
- Dipartimento di Biologia e Biotecnologie “C. Darwin”, Sapienza—Università di Roma, Via Alfonso Borelli 50, 00161 Rome, Italy;
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Dos Santos Guimarães A, Maciel LAM, de Souza MFB, Rodrigues LRR. Karyotypic and Molecular Analysis of Pterygoplichthys pardalis (Castelnau 1855) from the Lower Amazon River. Animals (Basel) 2023; 13:ani13091533. [PMID: 37174570 PMCID: PMC10177225 DOI: 10.3390/ani13091533] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/03/2023] [Revised: 03/27/2023] [Accepted: 04/05/2023] [Indexed: 05/15/2023] Open
Abstract
Pterygoplichthys pardalis is an armored catfish native to South America and an important resource for the ornamental fish industry. Recently, several exotic populations have been introduced into rivers on five continents. Despite its commercial and environmental importance, P. pardalis is poorly studied from a genetic perspective. In this study, we analyzed the karyotype of P. pardalis from the Amazon River and molecular variations in the mitochondrial gene Cytochrome oxidase I (COI) between native and exotic populations. The karyotype presented diploid number 2n = 52 and NF = 100 without cytogenetic variation between males and females. Nucleolus organizer regions (Ag-NOR) in the distal region of the long arm of pair 12 coincided with the 18S hybridization signal, whereas 5S was syntenic to this chromosome but localized in the short arm. The constitutive heterochromatin was restricted in the distal regions of pairs 4, 12, 25, and 26. Telomeric probes showed only distal hybridization signals. The karyotype of P. pardalis diverged from that of its congeners, and COI molecular variation revealed four haplotypes. The Philippine population revealed the greatest diversity with three haplotypes, while haplotype H1 was the most abundant and observed in both native and exotic populations. This new genetic data contributes to species management and provides useful information from an aquaculture perspective.
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Affiliation(s)
- Alcimara Dos Santos Guimarães
- Graduate Program Natural Resources of Amazonia-PPGRNA, Federal University of Western Pará-UFOPA, Tapajós Campus, Vera Paz Street, Santarém 68040-255, PA, Brazil
- Graduate Program Society, Nature and Development-PPGSND, Federal University of Western Pará-UFOPA, Tapajós Campus, Vera Paz Street, Santarém 68040-255, PA, Brazil
| | - Luan Aércio Melo Maciel
- Graduate Program Society, Nature and Development-PPGSND, Federal University of Western Pará-UFOPA, Tapajós Campus, Vera Paz Street, Santarém 68040-255, PA, Brazil
| | - Mendelshon Fujiie Belém de Souza
- Genetics and Biodiversity Laboratory-LGBio, Educational Sciences Institute-ICED, Federal University of Western Pará-UFOPA, Tapajós Campus, Vera Paz Street, Santarém 68040-255, PA, Brazil
| | - Luís Reginaldo Ribeiro Rodrigues
- Graduate Program Natural Resources of Amazonia-PPGRNA, Federal University of Western Pará-UFOPA, Tapajós Campus, Vera Paz Street, Santarém 68040-255, PA, Brazil
- Genetics and Biodiversity Laboratory-LGBio, Educational Sciences Institute-ICED, Federal University of Western Pará-UFOPA, Tapajós Campus, Vera Paz Street, Santarém 68040-255, PA, Brazil
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Occurrence of Sex Chromosomes in Fish of the Genus Ancistrus with a New Description of Multiple Sex Chromosomes in the Ecuadorian Endemic Ancistrus clementinae (Loricariidae). Genes (Basel) 2023; 14:genes14020306. [PMID: 36833233 PMCID: PMC9956960 DOI: 10.3390/genes14020306] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/29/2022] [Revised: 01/16/2023] [Accepted: 01/20/2023] [Indexed: 01/26/2023] Open
Abstract
Ancistrus Kner, 1854, is the most diverse genus among the Ancistrini (Loricariidae) with 70 valid species showing a wide geographic distribution and great taxonomic and systematic complexity. To date, about 40 Ancistrus taxa have been karyotyped, all from Brazil and Argentina, but the statistic is uncertain because 30 of these reports deal with samples that have not yet been identified at the species level. This study provides the first cytogenetic description of the bristlenose catfish, Ancistrus clementinae Rendahl, 1937, a species endemic to Ecuador, aiming to verify whether a sex chromosome system is identifiable in the species and, if so, which, and if its differentiation is associated with the presence of repetitive sequences reported for other species of the family. We associated the karyotype analysis with the COI molecular identification of the specimens. Karyotype analysis suggested the presence of a ♂ZZ/♀ZW1W2 sex chromosome system, never detected before in Ancistrus, with both W1W2 chromosomes enriched with heterochromatic blocks and 18S rDNA, in addition to GC-rich repeats (W2). No differences were observed between males and females in the distribution of 5S rDNA or telomeric repeats. Cytogenetic data here obtained confirm the huge karyotype diversity of Ancistrus, both in chromosome number and sex-determination systems.
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Black CR, Armbruster JW. Evolutionary integration and modularity in the diversity of the suckermouth armoured catfishes. ROYAL SOCIETY OPEN SCIENCE 2022; 9:220713. [PMID: 36425524 PMCID: PMC9682303 DOI: 10.1098/rsos.220713] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 06/06/2022] [Accepted: 11/07/2022] [Indexed: 06/16/2023]
Abstract
The evolution of morphological diversity has held a long-standing fascination among scientists. In particular, do bodies evolve as single, integrated units or do different body parts evolve semi-independently (modules)? Suckermouth armoured catfishes (Loricariidae) have a morphology that lends nicely to evolutionary modularity and integration studies. In addition to a ventrally facing oral jaw that directly contacts surfaces, the neurocranium and pectoral girdle are fused, which limits movement of the anterior part of the body. Functional constraints suggest it is likely the head and post-cranial body act as separate modules that can evolve independently. If true, one would expect to see a two- or three-module system where the head and post-cranial body are morphologically distinct. To test this hypothesis, we quantified shape using geometric morphometric analysis and assessed the degree of modularity across functionally important regions. We found the armoured catfish body is highly modularized, with varying degrees of integration between each module. Within subfamilies, there are different patterns of evolutionary modularity and integration, suggesting that the various patterns may have driven diversification along a single trajectory in each subfamily. This study suggests the evolution of armoured catfish diversification is complex, with morphological evolution influenced by interactions within and between modules.
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Santos da Silva K, de Souza ACP, Rodrigues LRR, Pieczarka JC, Nagamachi CY. Chromosomal Diversification in Pseudacanthicus Species (Loricariidae, Hypostominae) Revealed by Comparative Mapping of Repetitive Sequences. Animals (Basel) 2022; 12:ani12192612. [PMID: 36230353 PMCID: PMC9558496 DOI: 10.3390/ani12192612] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/21/2022] [Revised: 09/22/2022] [Accepted: 09/27/2022] [Indexed: 11/19/2022] Open
Abstract
Simple Summary The fishes of the Loricariidae family have a huge genetic diversity, mainly involving variations in the number and shape of chromosomes. The recognition of the species genus Pseudacanthicus is complex due to the large diversity of forms and limited knowledge of their genetic diversity. In this study, the karyotypes of three Pseudacanthicus species were comparatively analyzed using classical and molecular methods. They presented the same diploid number, but with different compositions of repetitive DNA sequences. Such information can be useful for the recognition of distinct species, in addition to providing important insights into the real biodiversity of this important group of Neotropical fish. Abstract Pseudacanthicus is a genus of Neotropical fish with eight valid species, in addition to numerous lineages not formally identified. It occurs along the Amazon and Tocantins River basins, in Suriname and in the Guiana shield. There are no karyotypic data in the literature for species of this genus. Here, the karyotypes of three Pseudacanthicus species (P. spinosus, P. leopardus and Pseudacanthicus sp.) were comparatively analyzed by classical cytogenetics and fluorescence in situ hybridization using 18S and 5S rDNA probes, U2 snDNA and telomeric sequences. The analyzed species presented 52 chromosomes and KF = 18 m + 34 sm. Constitutive heterochromatin occurred in blocks on a few chromosomes. The 18S rDNA occurred in a single pair; interestingly, P. leopardus presented only one locus of this sequence in its diploid genome. The 5S rDNA sequence occurred in only one pair in P. leopardus, and in multiple sites in Pseudacanthicus sp. and P. spinosus. The snDNA U2 occurred in only one pair in all analyzed species. Telomeric sequences did not show interstitial sites. Although Pseudacanthicus species share the same 2n and KF, repetitive sequence analysis revealed karyotypic diversity among these species. The occurrence of DNA double-strand breaks related to fragile sites, unequal crossing over and transpositions is proposed as the mechanism of karyotypic diversification, suggesting that the conservation of the karyotypic macrostructure is only apparent in this group of fish.
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Affiliation(s)
- Kevin Santos da Silva
- Laboratório de Citogenética, Centro de Estudos Avançados da Biodiversidade, Instituto de Ciências Biológicas, Universidade Federal do Pará, Belém 66075-750, Brazil
| | - Augusto César Paes de Souza
- Laboratório de Estudo da Ictiofauna Amazônica, Instituto Federal de Educação, Ciência e Tecnologia do Pará, Abaetetuba 684400-000, Brazil
| | - Luís Reginaldo Ribeiro Rodrigues
- Laboratório de Genética & Biodiversidade, Instituto de Ciências da Educação, Universidade Federal do Oeste do Pará, Santarém 68040-255, Brazil
| | - Julio Cesar Pieczarka
- Laboratório de Citogenética, Centro de Estudos Avançados da Biodiversidade, Instituto de Ciências Biológicas, Universidade Federal do Pará, Belém 66075-750, Brazil
| | - Cleusa Yoshiko Nagamachi
- Laboratório de Citogenética, Centro de Estudos Avançados da Biodiversidade, Instituto de Ciências Biológicas, Universidade Federal do Pará, Belém 66075-750, Brazil
- Correspondence:
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Schott SCQ, Glugoski L, Azambuja M, Moreira-Filho O, Vicari MR, Nogaroto V. Comparative Cytogenetic and Sequence Analysis of U Small Nuclear RNA Genes in Three Ancistrus Species (Siluriformes: Loricariidae). Zebrafish 2022; 19:200-209. [PMID: 36099209 DOI: 10.1089/zeb.2022.0040] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022] Open
Abstract
Ancistrus presents a wide karyotypic diversity, resulting from numeric and structural chromosomal rearrangements. It has been proposed that some genome-specific regions containing repetitive units could organize prone-to-break DNA sites in Loricariidae, triggering chromosomal rearrangements such as Robertsonian fusions (Rb fusions), centric fissions, translocations, and inversions. The tandemly repeats of the small nuclear RNAs (snRNAs) gene families are considered good cytogenetic markers for understanding chromosomal remodeling events among closely related species, but these snRNAs have been scarcely analyzed in Ancistrus. This study presented the nucleotide sequencing and comparative in situ location of U snRNA sequences from Ancistrus aguaboensis, Ancistrus cf. multispinis, and Ancistrus sp. (2n = 50, 52, and 50, respectively), aiming to provide information about snRNA clusters in the genome and chromosome evolution in Ancistrus. U snRNA nucleotide sequences of Ancistrus presented identity to orthologous copies and folded their secondary structures correctly. In situ localization and karyotyping of the three Ancistrus species revealed clustered copies of U2 and U5 snRNA gene families to a single chromosome site, one chromosome pair bearing U1 snRNA sequence, and one main locus of U4 snRNA sequence, besides scattered signals along the chromosomes. Previous studies related the participation of the rRNA gene families in centric fusion events, contributing to chromosome rearrangements and karyotype plasticity present in Loricariidae. In this study, homeologies in U snRNA loci chromosomal locations were detected, indicating the occurrence of conserved sites of these gene families in these three Ancistrus species with 2n = 50 or 52 chromosomes.
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Affiliation(s)
| | - Larissa Glugoski
- Departamento de Genética e Evolução, Universidade Federal de São Carlos, São Carlos, Brazil
| | - Matheus Azambuja
- Departamento de Genética, Programa de Pós-Graduação em Genética, Universidade Federal do Paraná, Curitiba, Brazil
| | - Orlando Moreira-Filho
- Departamento de Genética e Evolução, Universidade Federal de São Carlos, São Carlos, Brazil
| | - Marcelo Ricardo Vicari
- Departamento de Biologia Estrutural, Molecular e Genética, Universidade Estadual de Ponta Grossa, Ponta Grossa, Brazil
| | - Viviane Nogaroto
- Departamento de Biologia Estrutural, Molecular e Genética, Universidade Estadual de Ponta Grossa, Ponta Grossa, Brazil
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Santos da Silva K, Glugoski L, Vicari MR, de Souza ACP, Noronha RCR, Pieczarka JC, Nagamachi CY. Chromosomal Diversification in Ancistrus Species (Siluriformes: Loricariidae) Inferred From Repetitive Sequence Analysis. Front Genet 2022; 13:838462. [PMID: 35401670 PMCID: PMC8987504 DOI: 10.3389/fgene.2022.838462] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/17/2021] [Accepted: 02/25/2022] [Indexed: 11/25/2022] Open
Abstract
The Ancistrus genus has extensive chromosomal diversity among species, including heteromorphic sex chromosomes occurrence. However, studies have been shown that chromosomal diversity may still be underestimated. Repetitive sequences represent a large part of eukaryotic genomes, associated with mechanisms of karyotypic diversification, including sex chromosomes evolution. This study analyzed the karyotype diversification of two Ancistrus species (Ancistrus sp. 1 and Ancistrus sp. 2) from the Amazon region by classical and molecular chromosomal markers. Conventional chromosome bands and fluorescence in situ hybridization using probes 18S and 5S rDNA, besides (CA)n, (CG)n, (GA)n, (CAC)n, (CAG)n, (CAT)n, (GAA)n, (GAC)n, (TAA)n, and (TTAGGG)n in tandem repeats were determined on the karyotypes. Ancistrus sp. 1 and Ancistrus sp. 2 presented karyotypes with 2n = 38 (20 m + 14sm+4st, XX/XY) and 2n = 34 (20 m + 14sm, without heteromorphic sex chromosomes), respectively. Robertsonian rearrangements can explain the diploid number difference. C-bands occurred in pericentromeric regions in some chromosomes, and a single 18S rDNA locus occurred in both species. The 5S rDNA showed variation in the number of loci between species karyotypes, suggesting the occurrence of unstable sites and rearrangements associated with these sequences in Ancistrus. The microsatellite mapping evidenced distinct patterns of organization between the two analyzed species, occurring mainly in the sex chromosomes in Ancistrus sp. 1, and in the centromeric and pericentromeric regions of chromosomes m/sm in Ancistrus sp. 2. These data shows the extensive chromosomal diversity of repetitive sequences in Ancistrus, which were involved in Robertsonian rearrangements and sex chromosomes differentiation.
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Affiliation(s)
- Kevin Santos da Silva
- Laboratório de Citogenética, Centro de Estudos Avançados da Biodiversidade, Instituto de Ciências Biológicas, Universidade Federal do Pará, Belém, Brazil
| | - Larissa Glugoski
- Laboratório de Citogenética de Peixes, Universidade Federal de São Carlos, São Carlos, Brazil
- Laboratório de Biologia Cromossômica: Estrutura e Função, Departamento de Biologia Estrutural, Molecular e Genética, Universidade Estadual de Ponta Grossa, Ponta Grossa, Brazil
| | - Marcelo Ricardo Vicari
- Laboratório de Biologia Cromossômica: Estrutura e Função, Departamento de Biologia Estrutural, Molecular e Genética, Universidade Estadual de Ponta Grossa, Ponta Grossa, Brazil
| | - Augusto César Paes de Souza
- Laboratório de Estudo da Ictiofauna Amazônica, Instituto Federal de Educação, Ciência e Tecnologia do Pará, Abaetetuba, Brazil
| | - Renata Coelho Rodrigues Noronha
- Laboratório de Citogenética, Centro de Estudos Avançados da Biodiversidade, Instituto de Ciências Biológicas, Universidade Federal do Pará, Belém, Brazil
| | - Julio Cesar Pieczarka
- Laboratório de Citogenética, Centro de Estudos Avançados da Biodiversidade, Instituto de Ciências Biológicas, Universidade Federal do Pará, Belém, Brazil
| | - Cleusa Yoshiko Nagamachi
- Laboratório de Citogenética, Centro de Estudos Avançados da Biodiversidade, Instituto de Ciências Biológicas, Universidade Federal do Pará, Belém, Brazil
- *Correspondence: Cleusa Yoshiko Nagamachi, ,
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Sun CH, Huang Q, Zeng XS, Li S, Zhang XL, Zhang YN, Liao J, Lu CH, Han BP, Zhang Q. Comparative analysis of the mitogenomes of two Corydoras (Siluriformes, Loricarioidei) with nine known Corydoras, and a phylogenetic analysis of Loricarioidei. Zookeys 2022; 1083:89-107. [PMID: 35115873 PMCID: PMC8803743 DOI: 10.3897/zookeys.1083.76887] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/22/2021] [Accepted: 01/06/2022] [Indexed: 01/04/2023] Open
Abstract
Corydoras is a speciose catfish genus from South America with widely investigated phylogenetic and evolutionary relationships. The complete mitogenomes of C. aeneus and C. paleatus were sequenced, assembled, and annotated using next-generation sequencing. The genome arrangements, gene contents, genome structures, base compositions, evolutionary features, codon usage, and tRNA structures of the two mitogenomes were compared and analyzed with nine published mitogenomes of Corydoras. Phylogenetic analysis was performed using concatenated nucleotide sequences with 13 protein-coding genes and two rRNAs with 44 mitogenomes of Siluriformes. These results provide information on the mitogenomes of eleven Corydoras species and evolutionary relationships within the suborder Loricarioidei, which may be applicable for further phylogenetic and taxonomic studies on Siluriformes and Loricarioidei.
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Viana IKS, S. GMF, Pantoja JCD, Oliveira RS, Mendes YA, Nunes JLG, Ferreira MAP, Rocha RM. Subfamily hypostominae: similarities and differences in testicular structure of amazonian fish. BMC ZOOL 2022; 7:3. [PMID: 37170306 PMCID: PMC10127008 DOI: 10.1186/s40850-021-00106-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/02/2021] [Accepted: 12/21/2021] [Indexed: 11/10/2022] Open
Abstract
Abstract
Background
Hypostominae is a subfamily of the family Loricariidae that has a great diversity of species. Accordingly, testicular studies in fish can contribute to the phylogeny and taxonomy of species and to the comparison of reproductive aspects between species. Thus, this work aimed to characterize the testicular morphology and spermatogenesis of the Hypostominae species Baryancistrus xanthellus, Peckoltia oligospila and Hypancistrus zebra.
Results
B. xanthellus, P. oligospila and H. zebra had an anastomosed tubular type of testis. The germinal epithelium was continuous with unrestricted spermatogonia, and the proliferative, meiotic and spermiogenic phases were defined in all species. In the spermiogenic phase, spermatids were classified as initial, intermediate and final. Only in B. xanthellus in the final phase was there nuclear rotation. The sperm for the three species had a head with an oval shape and a single flagellum composed of the short midpiece, principal piece and end piece. B. xanthellus and P. oligospila showed a cylindrical flagellum and H. zebra showed projections that produced a flattened appearance.
Conclusions
On the basis testicular structure and ultrastructural characteristics of the germ cells, there was a greater relationship between B. xanthelus and P. oligospila, while H. zebra had particular characteristics. These aspects show that despite belonging to the same subfamily, the species have distinct biological characteristics.
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12
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Lustosa-Costa SY, Ramos TPA, Zawadzki CH, Lima SMQ. Review of the armoured catfish genus Hypostomus (Siluriformes: Loricariidae) from the Parnaíba River basin, Northeastern Brazil, with description of a new species. NEOTROPICAL ICHTHYOLOGY 2022. [DOI: 10.1590/1982-0224-2021-0126] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Abstract The species of Hypostomus from the Parnaíba River basin were reviewed through molecular and morphological analysis. Five species were found in the basin, including a new species herein described. The distribution of H. pusarum was expanded to this basin, and a closely related species was recorded (H. aff. pusarum), also the presence of H. johnii and H. vaillanti was confirmed. The new species is distinguished from most congeners by its large number of premaxillary and dentary teeth, a wide dental angle of 115° to 135°, presence of a rounded dark spots on a lighter background and anteromedial region of the abdomen depleted of plaques (vs. anteromedial region of the abdomen covered by platelets and odontodes in H. johnii, H. pusarum, H. aff. pusarum and H. vaillanti). Furthermore, an identification key of the species from the Maranhão-Piauí ecoregion and maps with the geographic distribution of these species are presented. The species of Hypostomus in the Parnaíba River basin have different geographic distributions, suggesting different niches or geographical barriers, providing an opportunity for ecological and evolutionary studies.
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13
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Paula GBND, Gavazzoni M, Zawadzki CH, Fernandes CA, Portela-Castro ALB, Lui RL, Margarido VP. Identification of cryptic species in allopatric populations of Hypostomus tietensis (Siluriformes: Loricariidae) through cytogenetics analyses. NEOTROPICAL ICHTHYOLOGY 2022. [DOI: 10.1590/1982-0224-2021-0158] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Abstract
Abstract Hypostomus is the most specious genus of Hypostominae, composed of several species with high intraspecific morphological and color pattern variation, making their identification a complex issue. One of the species with problematic identification is Hypostomus tietensis that was described from a single specimen, resulting in uncertainties about its color pattern and correct identification. To assist in this context, cytogenetic analyzes were carried out in three putative populations of H. tietensis from the Upper Paraná River basin, one of them from the type locality. The three populations showed considerable cytogenetic differences, with 2n = 72 chromosomes for the population from the type locality and 2n = 76 chromosomes for the others. Terminal NORs were detected (Ag- and 18S rDNA-FISH), being simple for the type locality population (acrocentric pair 23, long arm) and the Pirapó River (subtelocentric pair 11, short arm), and multiple for Do Campo River (subtelocentric pairs 11 and 12, short and long arm, respectively). C-banding was efficient in differentiating the type locality population from the others. Cytogenetic data revealed that populations from Pirapó and Do Campo rivers, although treated until now as Hypostomus aff. tietensis, represent a cryptic species, and those morphological analyses are necessary to differentiate and for describing this new species.
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Affiliation(s)
| | | | - Cláudio H. Zawadzki
- Universidade Estadual de Maringá, Brazil; Universidade Estadual de Maringá, Brazil
| | - Carlos A. Fernandes
- Universidade Estadual de Maringá, Brazil; Universidade Estadual de Maringá, Brazil; Universidade Estadual de Maringá, Brazil
| | | | | | - Vladimir P. Margarido
- Universidade Estadual de Maringá, Brazil; Universidade Estadual do Oeste do Paraná, Brazil
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14
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Anjos MDS, Jardim de Queiroz L, Penido IDS, Bitencourt JDA, Barreto SB, Sarmento‐Soares LM, Batalha‐Filho H, Affonso PRADM. A taxonomically complex catfish group from an underrepresented geographic area: Systematics and species limits in
Hypostomus
Lacépède, 1803 (Siluriformes, Loricariidae) from Eastern South America. J ZOOL SYST EVOL RES 2021. [DOI: 10.1111/jzs.12572] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
| | - Luiz Jardim de Queiroz
- Department of Fish Ecology and Evolution Swiss Federal Institute of Aquatic Science and Technology (Eawag) Dübendorf Switzerland
| | - Iago de Souza Penido
- Programa de Pós‐Graduação em Biologia Comparada Universidade Estadual de Maringá Maringá Brazil
| | | | - Silvia Britto Barreto
- National Institute of Science and Technology in Interdisciplinary and Transdisciplinary Studies in Ecology and Evolution (INCT INTREE) Instituto de Biologia Universidade Federal da Bahia Salvador Brazil
| | | | - Henrique Batalha‐Filho
- Instituto de Biologia Universidade Federal da Bahia Salvador Brazil
- National Institute of Science and Technology in Interdisciplinary and Transdisciplinary Studies in Ecology and Evolution (INCT INTREE) Instituto de Biologia Universidade Federal da Bahia Salvador Brazil
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15
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Santos da Silva K, de Souza ACP, Pety AM, Noronha RCR, Vicari MR, Pieczarka JC, Nagamachi CY. Comparative Cytogenetics Analysis Among Peckoltia Species (Siluriformes, Loricariidae): Insights on Karyotype Evolution and Biogeography in the Amazon Region. Front Genet 2021; 12:779464. [PMID: 34777486 PMCID: PMC8581261 DOI: 10.3389/fgene.2021.779464] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/18/2021] [Accepted: 10/18/2021] [Indexed: 11/13/2022] Open
Abstract
Peckoltia is widely distributed genus in the Amazon and Orinoco basins and the Guiana Shield, containing 18 valid species, and distinct morphotypes still needing description in the scientific literature due to its great taxonomic complexity. This study performed a comparative chromosomal analysis of two undescribed Peckoltia species (Peckoltia sp. 3 Jarumã and Peckoltia sp. 4 Caripetuba) from the Brazilian Amazon using conventional chromosome bands methods and in situ localization of the repetitive DNA (5S and 18S rRNA and U1 snRNA genes and telomeric sequences). Both species presented 2n = 52 but differed in their karyotype formula, probably due to inversions or translocations. The nucleolus organizer regions (NORs) showed distal location on a probably homeologous submetacentric pair in both species, besides an extra signal in a subtelocentric chromosome in Peckoltia sp. 4 Caripetuba. Heterochromatin occurred in large blocks, with different distributions in the species. The mapping of the 18S and 5S rDNA, and U1 snDNA showed differences in locations and number of sites. No interstitial telomeric sites were detected using the (TTAGGG)n probes. Despite 2n conservationism in Peckoltia species, the results showed variation in karyotype formulas, chromosomal bands, and locations of repetitive sites, demonstrating great chromosomal diversity. A proposal for Peckoltia karyotype evolution was inferred in this study based on the diversity of location and number of chromosomal markers analyzed. A comparative analysis with other Peckoltia karyotypes described in the literature, their biogeography patterns, and molecular phylogeny led to the hypothesis that the derived karyotype was raised in the left bank of the Amazon River.
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Affiliation(s)
- Kevin Santos da Silva
- Laboratório de Citogenética, Centro de Estudos Avançados da Biodiversidade, Instituto de Ciências Biológicas, Universidade Federal Do Pará, Belém, Brazil
| | - Augusto Cesar Paes de Souza
- Laboratório de Estudos da Ictiofauna da Amazônia, Instituto Federal de Educação Ciência e Tecnologia Do Pará, Abaetetuba, Brazil
| | - Ananda Marques Pety
- Laboratório de Citogenética, Centro de Estudos Avançados da Biodiversidade, Instituto de Ciências Biológicas, Universidade Federal Do Pará, Belém, Brazil
| | - Renata Coelho Rodrigues Noronha
- Laboratório de Citogenética, Centro de Estudos Avançados da Biodiversidade, Instituto de Ciências Biológicas, Universidade Federal Do Pará, Belém, Brazil
| | - Marcelo Ricardo Vicari
- Laboratório de Biologia Cromossômica, Estrutura e Função, Departamento de Biologia Estrutural, Molecular e Genética, Universidade Estadual de Ponta Grossa, Ponta Grossa, Brazil
| | - Julio Cesar Pieczarka
- Laboratório de Citogenética, Centro de Estudos Avançados da Biodiversidade, Instituto de Ciências Biológicas, Universidade Federal Do Pará, Belém, Brazil
| | - Cleusa Yoshiko Nagamachi
- Laboratório de Citogenética, Centro de Estudos Avançados da Biodiversidade, Instituto de Ciências Biológicas, Universidade Federal Do Pará, Belém, Brazil
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16
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Xia W, Jiang H, Ge J, Cheng J, Liu P, Gou X. Next-generation sequencing yields the complete mitochondrial genome of Pterygoplichthys pardalis (Loricariidae; Siluriformes). MITOCHONDRIAL DNA PART B-RESOURCES 2021; 6:3209-3211. [PMID: 34693006 PMCID: PMC8530479 DOI: 10.1080/23802359.2021.1959447] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
In this study, we report the complete mitochondrial genome of Pterygoplichthys pardalis has derived by next-generation sequencing. The complete mitochondrial genome of P. pardalis contains 16,425 bp encompassing 13 protein-coding genes, 22 transfer RNA genes, two ribosomal RNA genes, and one control region (D-loop). The base composition is A 31.79%, C 26.89%, G 14.63%, and T 26.69%, and its gene arrangement is consistent with mitochondrial genomes derived from other representatives of Loricariidae. A phylogenetic tree of 24 Loricariidae species constructed based on the 13 coding genes shows that P. pardalis is clustered with other Pterygoplichthys genus. It suggests that the molecular classification results confirm its external morphological characteristics. These results have reference value for the further study of phylogenetic relationship, taxonomic classification, and phylogeography of Loricariidae.
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Affiliation(s)
- Wangxiao Xia
- Shaanxi Key Laboratory of Brain Disorders, Institute of Basic Translational Medicine, Xi'an Medical University, Xi'an, China
| | - Hui Jiang
- National Engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, Zhejiang Ocean University, Zhoushan, China
| | - Jinghao Ge
- Shaanxi Key Laboratory of Brain Disorders, Institute of Basic Translational Medicine, Xi'an Medical University, Xi'an, China
| | - Jianghong Cheng
- Shaanxi Key Laboratory of Brain Disorders, Institute of Basic Translational Medicine, Xi'an Medical University, Xi'an, China
| | - Peng Liu
- Shaanxi Key Laboratory of Brain Disorders, Institute of Basic Translational Medicine, Xi'an Medical University, Xi'an, China
| | - Xingchun Gou
- Shaanxi Key Laboratory of Brain Disorders, Institute of Basic Translational Medicine, Xi'an Medical University, Xi'an, China
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17
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Ramos TPA, Lustosa-Costa SY, Barros-Neto LDF, Barbosa JEL. Parotocinclus jacksoni, a new hypoptopomatine catfish (Siluriformes: Loricariidae) from the Rio Mamanguape basin, north-eastern Brazil. JOURNAL OF FISH BIOLOGY 2021; 99:1467-1475. [PMID: 34270091 DOI: 10.1111/jfb.14855] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/05/2021] [Revised: 07/08/2021] [Accepted: 07/14/2021] [Indexed: 06/13/2023]
Abstract
A new species of Parotocinclus is described from the Rio Mamanguape basin, in the State of Paraíba, north-eastern Brazil. The new species can be distinguished from all of its congeners, except for P. bahiensis, P. cesarpintoi, P. jumbo, P. nandae and P. spilosoma, by the presence of an abdomen covered by a few small and dispersed platelets (vs. an abdomen entirely covered by large plates in adult individuals or the absence of plates in that region). The new species differs from those mentioned above with respect to several features, such as an exposed pectoral girdle and supporting odontodes medially and laterally, the number of premaxillary and dentary teeth, odontodes covering only the lateral portion of the cleithrum and the absence of irregular golden lines on the head and body (colour in vivo). The new species was collected only in the upper and middle portions of the Rio Mamanguape basin, suggesting a geographic distribution restricted to the Caatinga biome.
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Affiliation(s)
- Telton P A Ramos
- Laboratório de Ecologia Aquática, Departamento de Biologia/CCBS, Universidade Estadual da Paraíba, Campina Grande, Brazil
| | - Silvia Y Lustosa-Costa
- Laboratório de Ictiologia Sistemática e Evolutiva, Departamento de Botânica e Zoologia, Universidade Federal do Rio Grande do Norte, Natal, Brazil
| | - Luciano de F Barros-Neto
- Laboratório de Ictiologia Sistemática e Evolutiva, Departamento de Botânica e Zoologia, Universidade Federal do Rio Grande do Norte, Natal, Brazil
| | - José E L Barbosa
- Laboratório de Ecologia Aquática, Departamento de Biologia/CCBS, Universidade Estadual da Paraíba, Campina Grande, Brazil
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18
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Moreira DP, Melo RMC, Weber AA, Rizzo E. Insulin-like growth factors 1 and 2 are associated with testicular germ cell proliferation and apoptosis during fish reproduction. Reprod Fertil Dev 2021; 32:988-998. [PMID: 32693911 DOI: 10.1071/rd20128] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/15/2020] [Accepted: 06/02/2020] [Indexed: 01/11/2023] Open
Abstract
To support sperm production, fish testes undergo intense tissue remodelling, with endocrine, paracrine and autocrine signals regulating gonad physiology. The aim of this study was to investigate the testicular expression of insulin-like growth factor (Igf) 1 and Igf2 during spermatogenesis, and their relationship with cell proliferation and apoptosis throughout the reproductive cycle. The study was performed in male Hypostomus garmani, a catfish living in headwater rivers of the São Francisco River basin, Brazil. Spermatogenesis was analysed using histology, morphometry, immunohistochemistry and terminal deoxyribonucleotidyl transferase-mediated dUTP-digoxigenin nick end-labelling (TUNEL) analysis at different maturity stages. The results showed the proliferation of spermatogonia throughout the reproductive cycle, with a higher rate during the ripe stage. Germ and Sertoli cells expressed Igf1 at all stages of testicular maturity, Igf2 was predominant at the ripe stage and both Igf1 and Igf2 occurred at the spent stage. Caspase-3 and TUNEL analysis revealed a higher rate of apoptosis at the spent stage associated with reduced expression of Igf1 and Igf2. Sertoli cell proliferation was associated with spermatogonia and spermatocyte cysts at different stages of the reproductive cycle. Together, the data support a proliferative role for Igf1 and Igf2 in regulating testicular apoptosis in H. garmani, with cyclical variation in their expression during gonad maturation.
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Affiliation(s)
- Davidson P Moreira
- Departamento de Morfologia, Instituto de Ciências Biológicas, Universidade Federal de Minas Gerais, CP 486, 31270-901 Belo Horizonte, Minas Gerais, Brazil
| | - Rafael M C Melo
- Departamento de Morfologia, Instituto de Ciências Biológicas, Universidade Federal de Minas Gerais, CP 486, 31270-901 Belo Horizonte, Minas Gerais, Brazil
| | - André A Weber
- Departamento de Morfologia, Instituto de Ciências Biológicas, Universidade Federal de Minas Gerais, CP 486, 31270-901 Belo Horizonte, Minas Gerais, Brazil
| | - Elizete Rizzo
- Departamento de Morfologia, Instituto de Ciências Biológicas, Universidade Federal de Minas Gerais, CP 486, 31270-901 Belo Horizonte, Minas Gerais, Brazil; and Corresponding author.
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19
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Urbano-Bonilla A, Ballen GA. A new species of Chaetostoma (Siluriformes: Loricariidae) from the Orinoco basin with comments on Amazonian species of the genus in Colombia. JOURNAL OF FISH BIOLOGY 2021; 98:1091-1104. [PMID: 33277920 DOI: 10.1111/jfb.14640] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/08/2020] [Revised: 11/23/2020] [Accepted: 12/03/2020] [Indexed: 06/12/2023]
Abstract
Chaetostoma chimu sp. nov. is described from 119 specimens collected in the Andean foothills of the Orinoco River in Colombia. The new species can be distinguished from congeners by a combination of characters, including shape of cheek odontodes, presence of a supraoccipital excrescence, sexual dimorphism characters and colour pattern. In addition, this species can be distinguished from the sympatric and geographically close congeners of the Orinoco that have curved cheek odontodes (i.e., Chaetostoma anale, Chaetostoma formosae and Chaetostoma joropo), by presenting a generally larger orbital diameter and interorbital distance, details of sexual dimorphism and colour pattern. The type locality of specimens collected by Kjell von Sneidern in the mid-twentieth century in the Colombian Amazon is also clarified. Chaetostoma alternifasciatum and Chaetostoma vagum are proposed as junior synonyms of C. anale. An identification key for the species of Chaetostoma from cis-Andean drainages in Colombia is provided. The new species is herein categorized as Vulnerable (Vu) B1a (i, iii), following the IUCN criteria.
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Affiliation(s)
- Alexander Urbano-Bonilla
- Laboratorio de Ictiología, Departamento de Biología, Facultad de Ciencias, Pontificia Universidad Javeriana, Bogotá, Colombia
| | - Gustavo A Ballen
- Museu de Zoologia da Universidade de São Paulo, São Paulo, Brazil
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20
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Ferreira AMV, Viana PF, Zuanon J, Ezaz T, Cioffi MB, Takagui FH, Feldberg E. Cytogenetic Analysis of Panaqolus tankei Cramer & Sousa, 2016 (Siluriformes, Loricariidae), an Ornamental Fish Endemic to Xingu River, Brazil. Cytogenet Genome Res 2021; 161:187-194. [PMID: 33744896 DOI: 10.1159/000514061] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/29/2020] [Accepted: 12/23/2020] [Indexed: 11/19/2022] Open
Abstract
Despite conservation of the diploid number, a huge diversity in karyotype formulae is found in the Ancistrini tribe (Loricariidae, Hypostominae). However, the lack of cytogenetic data for many groups impairs a comprehensive understanding of the chromosomal relationships and the impact of chromosomal changes on their evolutionary history. Here, we present for the first time the karyotype of Panaqolus tankei Cramer & Sousa, 2016. We focused on the chromosomal characterization, using conventional and molecular cytogenetic techniques to unravel the evolutionary trends of this tribe. P. tankei, as most species of its sister group Pterygoplichthini, also possessess a conserved diploid number of 52 chromosomes. We observed heterochromatin regions in the centromeres of many chromosomes; pairs 5 and 6 presented interstitial heterochromatin regions, whereas pairs 23 and 24 showed extensive heterochromatin regions in their q arms. In situ localization of 18S rDNA showed hybridization signals correlating with the nucleolus organizer regions, which are located in the q arms of pair 5. However, the 5S rDNA was detected in the centromeric and terminal regions of the q arms of pair 8. (TTAGGG)n hybridized only in the terminal regions of all chromosomes. Microsatellite in situ localization showed divergent patterns, (GA)15 repeated sequences were restricted to the terminal regions of some chromosomes, whereas (AC)15 and (GT)15 showed a scattered hybridization pattern throughout the genome. Intraspecific comparative genomic hybridization was performed on the chromosomes of P. tankei to verify the existence of sex-specific regions. The results revealed only a limited number of overlapping hybridization signals, coinciding with the heterochromatin in centromeric regions without any sex-specific signals in both males and females. Our study provides a karyotype description of P. tankei, highlighting extensive differences in the karyotype formula, the heterochromatin regions, and sites of 5S and 18S rDNA, as compared with data available for the genus.
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Affiliation(s)
- Alex M V Ferreira
- Laboratório de Genética Animal, Instituto Nacional de Pesquisas da Amazônia, Coordenação de Biodiversidade, Manaus, Brazil,
| | - Patrik F Viana
- Laboratório de Genética Animal, Instituto Nacional de Pesquisas da Amazônia, Coordenação de Biodiversidade, Manaus, Brazil
| | - Jansen Zuanon
- Instituto Nacional de Pesquisas da Amazônia, Coordenação de Biodiversidade, Manaus, Brazil
| | - Tariq Ezaz
- Institute for Applied Ecology, Faculty of Science and Technology, University of Canberra, Canberra, Australian Capital Territory, Australia
| | - Marcelo B Cioffi
- Departamento de Genética e Evolução, Universidade Federal de São Carlos, São Carlos, Brazil
| | - Fábio H Takagui
- Departamento de Biologia Geral, Universidade Estadual de Londrina, Londrina, Brazil
| | - Eliana Feldberg
- Laboratório de Genética Animal, Instituto Nacional de Pesquisas da Amazônia, Coordenação de Biodiversidade, Manaus, Brazil
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21
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Londoño-Burbano A, Reis RE. A combined molecular and morphological phylogeny of the Loricariinae (Siluriformes: Loricariidae), with emphasis on the Harttiini and Farlowellini. PLoS One 2021; 16:e0247747. [PMID: 33720930 PMCID: PMC7959404 DOI: 10.1371/journal.pone.0247747] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/05/2020] [Accepted: 01/29/2021] [Indexed: 11/18/2022] Open
Abstract
We present a combined molecular and morphological phylogenetic analysis of the Loricariinae, with emphasis on the Harttiini (Cteniloricaria, Harttia, and Harttiella) and Farlowellini (Aposturisoma, Farlowella, Lamontichthys, Pterosturisoma, Sturisoma, and Sturisomatichthys). Character sampling comprised seven molecular markers (the mitochondrial Cytb, nd2, 12S and 16S, and the nuclear MyH6, RAG1 and RAG2) and 196 morphological characters. A total of 1,059 specimens, and 159 tissue samples were analized, representing 100 species. A Bayesian Inference analysis was performed using the concatenated data matrix, which is comprised of 6,819 characters. The Loricariinae were found to comprise the tribes (Hartiini (Loricariini, Farlowellini)), the latter two elevated from subtribes. A Maximum Parsimony analysis was also performed using the same data matrix in order to reveal phenotypical synapomorphies to diagnose each clade. Two MP trees were found with a length of 14,704 steps, consistency index of 0.29 and retention index of 0.61, which were summarized in a strict consensus tree. Harttiini includes (Harttiella (Cteniloricaria, Harttia), and Farlowellini includes (Lamontichthys (Pterosturisoma (Sturisoma (Sturisomatichthys, Farlowella)))). Aposturisoma was recovered nested within Farlowella and is synonymyzed to the latter. Sturisoma was corroborated as strictly cis-Andean, while Sturisomatichthys encompasses, besides the valid species already included in the genus, the trans-Andean species once belonging to Sturisoma sensu lato. Identification keys and phylogenetic diagnoses of family-group taxa and genera of both the Harttiini and the Farlowellini are provided.
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Affiliation(s)
- Alejandro Londoño-Burbano
- Museu Nacional, Universidade Federal do Rio de Janeiro, Departamento de Vertebrados - Setor de Ictiologia, São Cristóvão, Rio de Janeiro, RJ, Brazil
- Pontifícia Universidade Católica do Rio Grande do Sul, PUCRS, Laboratório de Sistemática de Vertebrados, Porto Alegre, RS, Brazil
| | - Roberto E. Reis
- Pontifícia Universidade Católica do Rio Grande do Sul, PUCRS, Laboratório de Sistemática de Vertebrados, Porto Alegre, RS, Brazil
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22
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Cardoso YP, Jardim de Queiroz L, Bahechar IA, Posadas PE, Montoya-Burgos JI. Multilocus phylogeny and historical biogeography of Hypostomus shed light on the processes of fish diversification in La Plata Basin. Sci Rep 2021; 11:5073. [PMID: 33658600 PMCID: PMC7930046 DOI: 10.1038/s41598-021-83464-x] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/16/2020] [Accepted: 01/05/2021] [Indexed: 01/31/2023] Open
Abstract
Distribution history of the widespread Neotropical genus Hypostomus was studied to shed light on the processes that shaped species diversity. We inferred a calibrated phylogeny, ancestral habitat preference, ancestral areas distribution, and the history of dispersal and vicariance events of this genus. The phylogenetic and distribution analyses indicate that Hypostomus species inhabiting La Plata Basin do not form a monophyletic clade, suggesting that several unrelated ancestral species colonized this basin in the Miocene. Dispersal to other rivers of La Plata Basin started about 8 Mya, followed by habitat shifts and an increased rate of cladogenesis. Amazonian Hypostomus species colonized La Plata Basin several times in the Middle Miocene, probably via the Upper Paraná and the Paraguay rivers that acted as dispersal corridors. During the Miocene, La Plata Basin experienced marine incursions, and geomorphological and climatic changes that reconfigured its drainage pattern, driving dispersal and diversification of Hypostomus. The Miocene marine incursion was a strong barrier and its retraction triggered Hypostomus dispersal, increased speciation rate and ecological diversification. The timing of hydrogeological changes in La Plata Basin coincides well with Hypostomus cladogenetic events, indicating that the history of this basin has acted on the diversification of its biota.
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Affiliation(s)
- Yamila P Cardoso
- Laboratorio de Sistemática y Biología Evolutiva, Facultad de Ciencias Naturales y Museo, Universidad Nacional de La Plata, Consejo Nacional de Investigaciones Científicas y Técnicas, Paseo del Bosque S/N, B1900FWA, La Plata, Buenos Aires, Argentina.
| | - Luiz Jardim de Queiroz
- Department of Genetics and Evolution, University of Geneva, 30 quai Ernest Ansermet, 1211, Geneva 4, Switzerland
| | - Ilham A Bahechar
- Department of Genetics and Evolution, University of Geneva, 30 quai Ernest Ansermet, 1211, Geneva 4, Switzerland
| | - Paula E Posadas
- Laboratorio de Sistemática y Biología Evolutiva, Facultad de Ciencias Naturales y Museo, Universidad Nacional de La Plata, Consejo Nacional de Investigaciones Científicas y Técnicas, Paseo del Bosque S/N, B1900FWA, La Plata, Buenos Aires, Argentina
| | - Juan I Montoya-Burgos
- Department of Genetics and Evolution, University of Geneva, 30 quai Ernest Ansermet, 1211, Geneva 4, Switzerland
- Institute of Genetics and Genomics in Geneva (IGE3), University of Geneva, Geneva, Switzerland
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Souza CS, Silva GSC, Ochoa LE, Roxo FF, Costa-Silva GJ, Foresti F, Melo BF, Oliveira C. Molecular and morphological diversity in species of Kronichthys (Teleostei, Loricariidae) from Atlantic coastal rivers of Brazil. JOURNAL OF FISH BIOLOGY 2021; 98:668-679. [PMID: 33128401 DOI: 10.1111/jfb.14607] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/26/2020] [Revised: 10/23/2020] [Accepted: 10/29/2020] [Indexed: 06/11/2023]
Abstract
The Neotropical catfish genus Kronichthys contains three species distributed along coastal rivers of southern and southeastern Brazil. Although phylogenetic hypotheses are available, the molecular and morphological diversity and species boundaries within the genus remain unexplored. In this study, the authors generated mitochondrial data for 90 specimens combined with morphometric and meristic data to investigate species diversity, species boundaries and putative morphological signatures in Kronichthys. Phylogenetic and species delimitation results clearly show the presence of four genetic lineages, three within Kronichthys heylandi along the coast from Rio de Janeiro to southern São Paulo and a single lineage encompassing both the nominal species Kronichthys lacerta and Kronichthys subteres from the Ribeira de Iguape basin to Santa Catarina in southern Brazil. Nonetheless, morphological data show overlapped ranges in morphometrics and a definition of only two morphotypes, with clear phenotypic differences in the teeth number: K. heylandi differs from K. subteres + K. lacerta by the higher number of premaxillary teeth (30-52 vs. 19-28) and higher number of dentary teeth (28-54 vs. 17-28). Headwater captures and connections of paleodrainages because of sea-level fluctuations represent the two major biogeographic processes promoting species diversification and lineage dispersal of Kronichthys in the Atlantic coastal range of Brazil.
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Affiliation(s)
- Camila S Souza
- Departamento de Biologia Estrutural e Funcional, Instituto de Biociências, Universidade Estadual Paulista, Botucatu, Brazil
| | - Gabriel S C Silva
- Departamento de Bioestatística, Biologia Vegetal, Parasitologia e Zoologia, Instituto de Biociências, Universidade Estadual Paulista, Botucatu, Brazil
| | - Luz E Ochoa
- Museu de Zoologia, Universidade de São Paulo, São Paulo, Brazil
| | - Fabio F Roxo
- Departamento de Bioestatística, Biologia Vegetal, Parasitologia e Zoologia, Instituto de Biociências, Universidade Estadual Paulista, Botucatu, Brazil
| | | | - Fausto Foresti
- Departamento de Biologia Estrutural e Funcional, Instituto de Biociências, Universidade Estadual Paulista, Botucatu, Brazil
| | - Bruno F Melo
- Departamento de Biologia Estrutural e Funcional, Instituto de Biociências, Universidade Estadual Paulista, Botucatu, Brazil
| | - Claudio Oliveira
- Departamento de Biologia Estrutural e Funcional, Instituto de Biociências, Universidade Estadual Paulista, Botucatu, Brazil
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High congruence of karyotypic and molecular data on Hypostomus species from Brazilian southeast. ORG DIVERS EVOL 2021. [DOI: 10.1007/s13127-021-00478-z] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
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de Oliveira RR, Zuanon J, Py-Daniel LHR, Birindelli JLO, Sousa LM. Taxonomic revision of Hopliancistrus Isbrücker & Nijssen, 1989 (Siluriformes, Loricariidae) with redescription of Hopliancistrus tricornis and description of four new species. PLoS One 2021; 16:e0244894. [PMID: 33471818 PMCID: PMC7817055 DOI: 10.1371/journal.pone.0244894] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/29/2020] [Accepted: 12/17/2020] [Indexed: 11/18/2022] Open
Abstract
Hopliancistrus is an Ancistrini genus diagnosed by having few and very strong cheek odontodes on interopercular area, and a patch of strong and stiff odontodes on the antero-lateral border of the snout. The type species is herein redescribed based on types and recently collected specimens. In addition, four new congeneric species are described based on specimens collected in other parts of the Rio Xingu and Rio Tapajós basins. Hopliancistrus tricornis is distributed in the lower Rio Tapajós and is diagnosed by the possession of four branched anal-fin rays and relatively large white to yellow spots on trunk and pectoral and pelvic fins, and dark brown spots on dorsal, caudal and anal fins. Hopliancistrus munduruku is described based on specimens from Rio Jamanxim (Rio Tapajós basin) and Rio Curuá (Rio Xingu basin) and is diagnosed by the possession of five branched anal-fin rays and large yellow blotches on trunk and dark brown to black spots over the fins. Hopliancistrus wolverine is distributed in the rapids of the lower and middle Rio Xingu and is diagnosed by the possession of five branched anal-fin rays and conspicuous small yellow dots on head, trunk and fins. Hopliancistrus xikrin is distributed in medium- to small-sized tributaries of the lower portion of Rio Xingu basin, and is diagnosed by absence of contact between the transverse process of the first dorsal-fin pterygiophore and the transverse process of the second pterygiophore. Hopliancistrus xavante is distributed in the tributaries of upper Rio Xingu basin, and is diagnosed by having a thick skin covering the nuchal plate; by having large white spots on trunk and fins; and by the possession of five branched anal-fin rays. An osteological description and a key for species identification are also provided.
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Affiliation(s)
- Renildo Ribeiro de Oliveira
- Instituto Nacional de Pesquisas da Amazônia (INPA), Coordenação de Biodiversidade (COBIO), Petrópolis, Manaus, AM, Brazil
- * E-mail:
| | - Jansen Zuanon
- Instituto Nacional de Pesquisas da Amazônia (INPA), Coordenação de Biodiversidade (COBIO), Petrópolis, Manaus, AM, Brazil
| | - Lucia H. Rapp Py-Daniel
- Instituto Nacional de Pesquisas da Amazônia (INPA), Coordenação de Biodiversidade (COBIO), Petrópolis, Manaus, AM, Brazil
| | - José L. O. Birindelli
- Departamento de Biologia Animal e Vegetal, Universidade Estadual de Londrina, Londrina, PR, Brazil
| | - Leandro M. Sousa
- Laboratório de Ictiologia de Altamira, Universidade Federal do Pará, Altamira, PA, Brazil
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Characterization of the complete mitochondrial genome of Macrotocinclus affinis (Siluriformes; Loricariidae) and phylogenetic studies of Siluriformes. Mol Biol Rep 2021; 48:677-689. [PMID: 33442829 DOI: 10.1007/s11033-020-06120-z] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/09/2020] [Accepted: 12/22/2020] [Indexed: 10/22/2022]
Abstract
The vertebrate mitochondrial genome is typically circular molecules made up of 14,000 to 16,000 bp, including 13 protein-coding genes (PCGs), 22 transfer RNA genes (tRNAs), two ribosomal RNA genes (12 s rRNA and 16 s rRNA) and a control region. Compared with nuclear DNA, mitochondrial DNA has a higher mutation rate, so it is one of the most effective and reliable molecular markers in fish phylogeny. Macrotocinclus affinis was the only species in Macrotocinclus (it was classified as Otocinclus in the past) and currently lacks genetic information. Most of the current researches are based on the mitochondrial Cytb gene and RAG1 and RAG2 nuclear genes to study the phylogenetic analysis of Siluriformes. So, the study provides the characteristic features of the Macrotocinclus affinis mitochondrial genome and this is the first time that the phylogenetic relationship of Siluriformes has been reconstructed based on COI. We aimed to sequence the entire mitochondrial genome of Macrotocinclus affinis using conventional PCR techniques and to clarify its phylogenetic status in Siluriformes by using the COI sequence of mitochondria. In this study, we sequenced the whole mitochondrial genome of this species yielding a 16,632 bp circular assembly composed of the typical vertebrate mitochondrial features. It contains 13 protein-coding genes, two rRNA genes, 22 tRNA genes, a putative control region, and one origin of replication on the light-strand. The overall base composition includes A (30.07%), T (24.43%), C (29.43%) and G (16.01%). The genome composition is A + T biased (54.5%), and exhibits AT-skew (0.1036) and GC-skew (-0.2962). Moreover, the 13 PCGs encode 3850 amino acids in total. The result of the phylogenetic tree supports Macrotocinclus affinis has a closest relationship with Otocinclus cf. hoppei far. These results will help to understand the characteristics of the mitochondrial genome of Macrotocinclus affinis and provide molecular basis for the evolutionary relationship of Loricariidae.
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Rosa AC, Martins FDO, Langeani F. Gross brain morphology of Hypoptopomatinae and Neoplecostominae (Siluriformes: Loricariidae): Comparative anatomy and phylogenetic implications. J ZOOL SYST EVOL RES 2020. [DOI: 10.1111/jzs.12424] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
Affiliation(s)
| | - Fernanda de Oliveira Martins
- IFPR—Instituto Federal do Paraná Londrina PR Brazil
- MZUEL—Museu de Zoologia da Universidade Estadual de Londrina Londrina, PR Brazil
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Fagundes PC, Pereira EHL, Reis RE. Iterative taxonomic study of Pareiorhaphis hystrix (Siluriformes, Loricariidae) suggests a single, yet phenotypically variable, species in south Brazil. PLoS One 2020; 15:e0237160. [PMID: 32881879 PMCID: PMC7470336 DOI: 10.1371/journal.pone.0237160] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/13/2020] [Accepted: 07/20/2020] [Indexed: 11/18/2022] Open
Abstract
Pareiorhaphis hystrix is a widely distributed species, occurring in the upper and middle Uruguay River and in the Taquari River basin, Patos Lagoon system, southern Brazil. Morphological variation has been detected throughout the distribution of P. hystrix, and this work seeks to test the conspecific nature of populations in several occurrence areas. Specimens from six areas in the Uruguay River basin and three in the Taquari River basin were compared. Variance analysis (ANOVA) was performed for the meristic data, and Principal Component Analysis (PCA) and Linear Discriminant Analysis (LDA) were conducted for morphometric data. Molecular analyses used coI, cytb, 12S and 16S mitochondrial genes, examining nucleotide diversity, haplotype diversity, genetic distance, and delimitation of possible multiple species through the Generalized Mixed Yule Coalescent (GMYC) method. Phylogenetic relationships of studied populations were also investigated through Bayesian inference. While PCA indicated a tendency of overlap between areas, ANOVA and LDA detected a subtle differentiation between populations from the two hydrographic basins. Yet, both latter analyses recovered the population from Pelotas River, a tributary to Uruguay River, as more similar to populations from Taquari River, which is congruent to morphological observations of anterior abdominal plates. The molecular data indicated a nucleotide diversity lower than the haplotypic diversity, suggestive of recent expansion. The concatenated haplotype network points to slight differentiation between areas, with each locality presenting unique and non-shared haplotypes, although with few mutational steps in general. The species delimitation by coalescence analysis suggested the presence of a variable number of OTUs depending on the inclusion or exclusion of an outgroup. In general, the morphological data suggest a subtle variation by river basin, while the genetic data indicates a weak population structuration by hydrographic areas, especially the Chapecó and Passo Fundo rivers. However, there is still not enough differentiation between the specimens to suggest multiple species. The iterative analyses indicate that Pareiorhaphis hystrix is composed of a single, although variable, species.
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Affiliation(s)
- Patrícia C. Fagundes
- Pontifícia Universidade Católica do Rio Grande do Sul, PUCRS, Laboratory of Vertebrate Systematics, Porto Alegre, State of Rio Grande do Sul, Brazil
| | - Edson H. L. Pereira
- Pontifícia Universidade Católica do Rio Grande do Sul, PUCRS, Laboratory of Vertebrate Systematics, Porto Alegre, State of Rio Grande do Sul, Brazil
| | - Roberto E. Reis
- Pontifícia Universidade Católica do Rio Grande do Sul, PUCRS, Laboratory of Vertebrate Systematics, Porto Alegre, State of Rio Grande do Sul, Brazil
- * E-mail:
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Molecular inferences about the genus Hypostomus Lacépède, 1803 (Siluriformes: Loricariidae): a review. Mol Biol Rep 2020; 47:6179-6192. [PMID: 32519308 DOI: 10.1007/s11033-020-05542-z] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/18/2019] [Accepted: 05/23/2020] [Indexed: 10/24/2022]
Abstract
This review compiles and discusses the use of genetic markers applied in the study of the fish genus Hypostomus Lacépède, 1803 (Siluriformes: Loricariidae). The database comprises 51 peer-review articles that were published in the last 52 years (1968-2020) and that approach analysis based on different classes of genetic markers. The use of cytogenetic and enzymatic markers was predominantly especially in population studies with the genus Hypostomus, while mitochondrial markers were the majority in phylogenetic studies. Although significant methodological advances have occurred for molecular evaluation, they are still modestly applied to the study of neotropical fish genera, in which Hypostomus is included. New perspectives, especially on integrative approaches, are needed to improve our knowledge of the genetic functionality of fishes.
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Bressman NR, Armbruster JW, Lujan NK, Udoh I, Ashley‐Ross MA. Evolutionary optimization of an anatomical suction cup: Lip collagen content and its correlation with flow and substrate in Neotropical suckermouth catfishes (Loricarioidei). J Morphol 2020; 281:676-687. [DOI: 10.1002/jmor.21136] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/12/2020] [Revised: 04/13/2020] [Accepted: 04/19/2020] [Indexed: 02/05/2023]
Affiliation(s)
- Noah R. Bressman
- Department of Biology Wake Forest University Winston‐Salem North Carolina USA
| | | | - Nathan K. Lujan
- Department of Ichthyology American Museum of Natural History, New York New York USA
| | - Imoh Udoh
- Department of Biology Wake Forest University Winston‐Salem North Carolina USA
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Oliveira RCD, Deprá GDC, Zawadzki CH, Silva JCBD, Graça WJD. Checklist of the fishes from Jamari River basin, in areas under influence of dams, Rondônia, Brazil. BIOTA NEOTROPICA 2020. [DOI: 10.1590/1676-0611-bn-2019-0803] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Abstract
Abstract: The Madeira River is the most extensive tributary of the Amazon River and has the largest diversity of fishes in the world. On its right bank, the Madeira River receives the Jamari River, in which the first hydroelectric power plant (HPP) in State of Rondônia, Samuel HPP, was built. Besides this, other dams were built in the Jamari River and its tributaries, however, the available information in the scientific literature about the ichthyofaunistic diversity of this basin is rare. This work aims to provide an ichthyofaunistic inventory in a region of the Jamari river basin, in the State of Rondônia, where three small hydropower plants (SHPs) were implemented. The ichthyofauna was sampled in 16 expeditions between August 2015 and December 2018. Gill nets and seine nets were used with different meshes, as well as longlines and cast nets at different times of the day. Additionally, 81 INPA lots of species from the Samuel HPP area of influence were reanalyzed. Fish were identified according to the specialized literature, as well as in consultations with experts of various taxonomic groups. Voucher specimens of the species were cataloged and deposited in the ichthyological collection of the Núcleo de Pesquisas em Limnologia, Ictiologia e Aquicultura (Nupélia) of the Universidade Estadual de Maringá. A total of 230 species were recorded, of which 22 were putative new species, 117 were added to the Jamari River basin and 28 to the Madeira River basin. The continuation of the studies in this section of the Jamari river basin is fundamental for analysis of local impact due to the presence of dams. Moreover, the addition of putative new species to the Madeira River basin indicates gaps in the knowledge of Neotropical ichthyofauna.
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Affiliation(s)
| | | | - Cláudio Henrique Zawadzki
- Universidade Estadual de Maringá, Brasil; Universidade Estadual de Maringá, Brasil; Universidade Estadual de Maringá, Brasil
| | | | - Weferson Júnio da Graça
- Universidade Estadual de Maringá, Brasil; Universidade Estadual de Maringá, Brasil; Universidade Estadual de Maringá, Brasil
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32
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Bifi AG, Ortega H. Redescription of Ancistrus greeni (Siluriformes: Loricariidae), and description of a new species from the río Madre de Dios basin, Peru. NEOTROPICAL ICHTHYOLOGY 2020. [DOI: 10.1590/1982-0224-2019-0070] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Abstract
ABSTRACT A new species of Ancistrus is described from minor tributaries of the río Madre de Dios basin (Cusco - Madre de Dios - Puno), in Peru. The new species shares with A. greeni an uncommon unicusp dentition; but it is distinguished from A. greeni by a larger orbital diameter, deeper caudal peduncle, and larger adipose-fin spine. The redescription of A. greeni is provided, and its recognition along with the discovery of this new species increases to five the officially number of Ancistrus species from the río Madre de Dios basin. The lectotype and paralectotype of A. greeni are provided.
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Glugoski L, Deon G, Schott S, Vicari MR, Nogaroto V, Moreira-Filho O. Comparative cytogenetic analyses in Ancistrus species (Siluriformes: Loricariidae). NEOTROPICAL ICHTHYOLOGY 2020. [DOI: 10.1590/1982-0224-2020-0013] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Abstract
ABSTRACT Ancistrus is a specious genus of armored catfishes that has been extensively used for cytogenetic studies in the last 17 years. A comparison of the extensive karyotypic plasticity within this genus is presented with new cytogenetic analysis for Ancistrus cf. multispinis and Ancistrus aguaboensis. This study aims to improve our understanding of chromosomal evolution associated with changes in the diploid number (2n) and the dispersion of ribosomal DNAs (rDNAs) within Ancistrus. Ancistrus cf. multispinis and A. aguaboensis exhibit 2n of 52 and 50 chromosomes, respectively. Given that A. cf. multispinis shares a 2n = 52 also found in Pterygoplichthyini, the sister group for Ancistrini, a Robertsonian (Rb) fusion event is proposed for the 2n reduction in A. aguaboensis. 5S rDNAs pseudogenes sites have already been associated with Rb fusion in Ancistrus and our analysis suggests that the 2n reduction in A. aguaboensis was triggered by double strand breaks (DSBs) and chromosomal rearrangements at 5S rDNA sites. The presence of evolutionary breakpoint regions (EBRs) into rDNA cluster is proposed to explain part of the Rb fusion in Ancistrus. Cytogenetic data presented extends the diversity already documented in Ancistrus to further understand the role of chromosomal rearrangements in the diversification of Ancistrini.
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Affiliation(s)
| | - Geize Deon
- Universidade Federal de São Carlos, Brazil
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Jardim de Queiroz L, Cardoso Y, Jacot-des-Combes C, Bahechar IA, Lucena CA, Rapp Py-Daniel L, Sarmento Soares LM, Nylinder S, Oliveira C, Parente TE, Torrente-Vilara G, Covain R, Buckup P, Montoya-Burgos JI. Evolutionary units delimitation and continental multilocus phylogeny of the hyperdiverse catfish genus Hypostomus. Mol Phylogenet Evol 2019; 145:106711. [PMID: 31857199 DOI: 10.1016/j.ympev.2019.106711] [Citation(s) in RCA: 20] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/22/2019] [Revised: 10/20/2019] [Accepted: 12/14/2019] [Indexed: 10/25/2022]
Abstract
With 149 currently recognized species, Hypostomus is one of the most species-rich catfish genera in the world, widely distributed over most of the Neotropical region. To clarify the evolutionary history of this genus, we reconstructed a comprehensive phylogeny of Hypostomus based on four nuclear and two mitochondrial markers. A total of 206 specimens collected from the main Neotropical rivers were included in the present study. Combining morphology and a Bayesian multispecies coalescent (MSC) approach, we recovered 85 previously recognized species plus 23 putative new species, organized into 118 'clusters'. We presented the Cluster Credibility (CC) index that provides numerical support for every hypothesis of cluster delimitation, facilitating delimitation decisions. We then examined the correspondence between the morphologically identified species and their inter-specific COI barcode pairwise divergence. The mean COI barcode divergence between morphological sisters species was 1.3 ± 1.2%, and only in 11% of the comparisons the divergence was ≥2%. This indicates that the COI barcode threshold of 2% classically used to delimit fish species would seriously underestimate the number of species in Hypostomus, advocating for a taxon-specific COI-based inter-specific divergence threshold to be used only when approximations of species richness are needed. The phylogeny of the 108 Hypostomus species, together with 35 additional outgroup species, confirms the monophyly of the genus. Four well-supported main lineages were retrieved, hereinafter called super-groups: Hypostomus cochliodon, H. hemiurus, H. auroguttatus, and H. plecostomus super-groups. We present a compilation of diagnostic characters for each super-group. Our phylogeny lays the foundation for future studies on biogeography and on macroevolution to better understand the successful radiation of this Neotropical fish genus.
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Affiliation(s)
- Luiz Jardim de Queiroz
- Department of Genetics and Evolution, University of Geneva, Quai Ernest-Ansermet 30, 1211 Geneva, Switzerland
| | - Yamila Cardoso
- Laboratorio de Sistemática y Biología Evolutiva, Facultad de Ciencias Naturales y Museo, Universidad Nacional de La Plata, Paseo del Bosque S/N, B1900FWA, La Plata, Consejo Nacional de Investigaciones Científicas y Técnicas, Argentina
| | - Cécile Jacot-des-Combes
- Department of Genetics and Evolution, University of Geneva, Quai Ernest-Ansermet 30, 1211 Geneva, Switzerland
| | - Ilham Anne Bahechar
- Department of Genetics and Evolution, University of Geneva, Quai Ernest-Ansermet 30, 1211 Geneva, Switzerland
| | - Carlos Alberto Lucena
- Museu de Ciências e Tecnologia, Pontifícia Universidade Católica do Rio Grande do Sul, Av. Ipiranga 6681, 90619-900 Porto Alegre, RS, Brazil
| | - Lucia Rapp Py-Daniel
- Coordenação de Biodiversidade, Programa de Coleções Científicas e Biológicas, Instituto Nacional de Pesquisas da Amazônia, Av. André Araújo 2936, 69060-001 Manaus, AM, Brazil
| | - Luisa Maria Sarmento Soares
- Museu de Biologia Professor Mello Leitão, Instituto Nacional da Mata Atlântica, Av. José Ruschi 4, 29650-000 Santa Teresa, ES, Brazil
| | - Stephan Nylinder
- Department of Psychology, University of Gothenburg. Haraldsgatan 1, 413 14 Gothenburg, Sweden
| | - Claudio Oliveira
- Departamento de Morfologia, Instituto de Biociências, Universidade Estadual de São Paulo, Rua Professor Doutor Antonio Celso Wagner Zanin 250, 18618-689 Botucatu, SP, Brazil
| | - Thiago Estevam Parente
- Laboratório de Toxicologia Ambiental, Laboratório de Genética Molecular de Microrganismos, Fundação Oswaldo Cruz, Av. Brasil 4365, 21040-900 Rio de Janeiro, RJ, Brazil
| | - Gislene Torrente-Vilara
- Departamento de Ciências do Mar, Universidade Federal de São Paulo, Av. Doutor Carvalho de Mendonça 144, 11070-100 Santos, SP, Brazil
| | - Raphaël Covain
- Department of Herpertology and Ichthyology, Museum of Natural History of Geneva, Route de Malagnou 1, 1211 Geneva, Switzerland
| | - Paulo Buckup
- Departamento de Vertebrados, Vista Museu Nacional do Rio de Janeiro/Universidade Federal do Rio de Janeiro, Quinta da Boa, 20940-040 Rio de Janeiro, RJ, Brazil
| | - Juan I Montoya-Burgos
- Department of Genetics and Evolution, University of Geneva, Quai Ernest-Ansermet 30, 1211 Geneva, Switzerland.
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Borzone Mas D, Alvarenga PF, Scarabotti PA. Ecological and phylogenetic determinants of life-history patterns among ten loricariid species. JOURNAL OF FISH BIOLOGY 2019; 95:1298-1310. [PMID: 31469422 DOI: 10.1111/jfb.14131] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/26/2019] [Accepted: 08/29/2019] [Indexed: 06/10/2023]
Abstract
We analysed the influence of ecological factors, phylogenetic history and trade-offs between traits on the life-history variation among 10 loricariid species of the middle Paraná River. We measured eight life-history variables and classified the life-history strategies following the equilibrium-periodic-opportunistic (EPO) model. Principal-component analysis of life-history traits segregated species along a gradient from small opportunistic (low fecundity, low parental investment) to large equilibrium (low-medium fecundity, high parental investment) species. A clear periodic strategist was absent in the analysed assemblage. Variation partitioning by canonical phylogenetic ordination analysis showed both a component of variation uniquely explained by phylogenetic history (PH; 32.2%) and a component shared between PH and ecological factors (EF; 37%). The EPO model is a useful tool for predicting correlations among life-history traits and understanding potential demographic responses of species to environmental variation. Life-history patterns observed throughout Loricariidae suggests that this family has diversified across all three endpoint strategies of the EPO model. Our study indicates that evolutionary lineage affiliation at the level of subfamily can be a strong predictor of the life-history strategy used by each species.
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Affiliation(s)
- Dalmiro Borzone Mas
- Laboratorio de Ictiología, Instituto Nacional de Limnología (UNL-CONICET), Santa Fe, Argentina
| | - Patricio F Alvarenga
- Laboratorio de Ictiología, Instituto Nacional de Limnología (UNL-CONICET), Santa Fe, Argentina
| | - Pablo A Scarabotti
- Laboratorio de Ictiología, Instituto Nacional de Limnología (UNL-CONICET), Santa Fe, Argentina
- Facultad de Humanidades y Ciencias, Departamento de Ciencias Naturales, Universidad Nacional del Litoral, Ciudad Universitaria, Santa Fe, Argentina
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36
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Pereira EHL, de A. Santos AC, de Pinna MCC, Reis RE. An Enigmatic New Loricariid (Actinopterygii: Siluriformes) from Relictual Upper Reaches of Chapada Diamantina, Bahia, Brazil. COPEIA 2019. [DOI: 10.1643/ci-19-244] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
Affiliation(s)
- Edson H. L. Pereira
- PUCRS, Laboratory of Vertebrate Systematics, Av. Ipiranga, 6681, 90619-900 Porto Alegre, RS, Brazil; (EHLP) ; and (RER) . Send reprint requests to RER
| | - Alexandre Clistenes de A. Santos
- Laboratório de Ictiologia, Universidade Estadual de Feira de Santana, Avenida Transnordestina, 44036-900 Feira de Santana, BA, Brazil;
| | - Mário C. C. de Pinna
- Museu de Zoologia da Universidade de São Paulo, Av. Nazaré, 481, 04263-000 São Paulo, SP, Brazil;
| | - Roberto E. Reis
- PUCRS, Laboratory of Vertebrate Systematics, Av. Ipiranga, 6681, 90619-900 Porto Alegre, RS, Brazil; (EHLP) ; and (RER) . Send reprint requests to RER
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Lujan NK, Armbruster JW, Werneke DC, Teixeira TF, Lovejoy NR. Phylogeny and biogeography of the Brazilian–Guiana Shield endemic Corymbophanes clade of armoured catfishes (Loricariidae). Zool J Linn Soc 2019. [DOI: 10.1093/zoolinnean/zlz090] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Abstract
Abstract
Numerous rivers, interrupted by large waterfalls and extensive rapids, drain the geologically ancient Guiana Shield Highlands. We describe a new armoured catfish genus and two new species endemic to the upper Ireng and Kuribrong rivers, respective tributaries of the Amazon and Essequibo basins in western Guiana. Corymbophanes ameliae sp. nov. is distinguished by having vermiculations on the abdomen, bands on the caudal fin, the anal fin i,5 and narrow caudal peduncle. Yaluwak primus gen. & sp. nov. is distinguished by having evertible cheek odontodes, a plated snout, a tall caudal peduncle and absence of adipose fin and iris operculum. We present a new molecular phylogenetic analysis inclusive of these and several related genera that suggests that the Corymbophanes clade (Araichthys, Corymbophanes, Cryptancistrus, Guianancistrus, Hopliancistrus and Yaluwak) originated in the Guiana Shield with secondary dispersal to the Brazilian Shield. Within the Guiana Shield, relationships among Corymbophanes and Yaluwak are consistent with geodispersal between drainages via headwater capture, although an uplift-mediated relictual distribution cannot be ruled out. ND2 haplotype structure among C. ameliae populations suggests that ichthyofaunal diversity on the Guiana Shield escarpment is shaped not only by inter-, but also intrafluvial barriers to gene flow.
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Affiliation(s)
- Nathan K Lujan
- Department of Ichthyology, American Museum of Natural History, New York, NY USA
- Department of Biological Sciences, University of Toronto Scarborough, Toronto, Ontario, Canada
| | | | - David C Werneke
- Department of Biological Sciences, Auburn University, Auburn, Alabama, USA
| | - Túlio Franco Teixeira
- Programa de Pós-graduação em Biologia de Vertebrados, Pontifícia Universidade Católica de Minas Gerais, Belo Horizonte, Minas Gerais, Brazil
- Museu de Zoologia da Universidade de São Paulo, São Paulo, SP, Brazil
| | - Nathan R Lovejoy
- Department of Biological Sciences, University of Toronto Scarborough, Toronto, Ontario, Canada
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de Oliveira RR, Py-Daniel LR, Oyakawa OT. Two New Species of the Armored Catfish Genus Baryancistrus Rapp Py-Daniel, 1989 (Siluriformes: Loricariidae) from Jari River, Amazon Basin, Brazil. COPEIA 2019. [DOI: 10.1643/ci-19-201] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
Affiliation(s)
- Renildo Ribeiro de Oliveira
- Coordenação de Biodiversidade, Coleção de Peixes, Programa de Coleções Científicas e Biológicas–PCCB, Instituto Nacional de Pesquisas da Amazônia–INPA, Av. André Araújo 2936, Petrópolis, 69067-375 Manaus, AM, Brazil; (RRO)
| | - Lúcia Rapp Py-Daniel
- Coordenação de Biodiversidade, Coleção de Peixes, Programa de Coleções Científicas e Biológicas–PCCB, Instituto Nacional de Pesquisas da Amazônia–INPA, Av. André Araújo 2936, Petrópolis, 69067-375 Manaus, AM, Brazil; (RRO)
| | - Osvaldo Takeshi Oyakawa
- Museu de Zoologia da Universidade de São Paulo, Avenida Nazaré, 481, 04263-000 São Paulo, SP, Brazil;
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Roxo FF, Ochoa LE, Sabaj MH, Lujan NK, Covain R, Silva GS, Melo BF, Albert JS, Chang J, Foresti F, Alfaro ME, Oliveira C. Phylogenomic reappraisal of the Neotropical catfish family Loricariidae (Teleostei: Siluriformes) using ultraconserved elements. Mol Phylogenet Evol 2019; 135:148-165. [DOI: 10.1016/j.ympev.2019.02.017] [Citation(s) in RCA: 44] [Impact Index Per Article: 8.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/20/2018] [Revised: 02/09/2019] [Accepted: 02/18/2019] [Indexed: 12/15/2022]
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de Borba RS, Mariotto S, Centofante L, Henrique Zawadzki C, Pasquali Parise-Maltempi P. Molecular discrimination of Ancistrus lineages (Siluriformes: Loricariidae) using barcode DNA tool. Mitochondrial DNA A DNA Mapp Seq Anal 2019; 30:602-608. [PMID: 30983442 DOI: 10.1080/24701394.2019.1597071] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
Abstract
Although several species of Ancistrus have been described from the Amazon and Paraguay river basins in the states of Amazonas and Mato Grosso, Brazil, the taxonomic status of most specimens from these regions remains doubtful. In the present work, cytogenetic and molecular data were used to discriminate and isolate unexpected Ancistrus lineages from the Amazon and Paraguay basins. For that, it was used DNA barcoding based on mitochondrial Cytochrome Oxidase Subunit I (COI) gene and cytogenic data to perform such molecular discrimination. The analyzed sequences had 669 bp, of which 171 bp were conserved and 491 bp were variable. The Neighbor-joining and Bayesian analysis revealed 21 distinct groups in topology. The genetic distances within each group was 0.4%, 21 times smaller than the mean distance observed among groups, which was 8.4%. These values showed seven distinct lineages of Ancistrus from the studied points of the Amazon basin and eight lineages from the Paraguay basin points. Our results illustrate the efficiency of this technique for the discrimination of the Ancistrus lineages once it indicates the occurrence of cryptic species in these regions, which cannot yet be identified either with just chromosomal or morphological analyzes.
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Affiliation(s)
| | | | - Liano Centofante
- c Institute of Biosciences, Mato Grosso Federal University , Cuiabá , Brazil
| | - Claudio Henrique Zawadzki
- d Department of Biology, Center for Research in Limnology, Ichthyology and Aquaculture (Nupélia), Maringá State University , Paraná , Brazil
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Nurubhasha R, Sampath Kumar NS, Thirumalasetti SK, Simhachalam G, Dirisala VR. Extraction and characterization of collagen from the skin of Pterygoplichthys pardalis and its potential application in food industries. Food Sci Biotechnol 2019; 28:1811-1817. [PMID: 31807354 DOI: 10.1007/s10068-019-00601-z] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/08/2018] [Revised: 02/28/2019] [Accepted: 03/07/2019] [Indexed: 10/27/2022] Open
Abstract
The primary objective of this study was to extract collagen from underutilized fish species owing to its cost effective nature and also its ability to address the demand of type I collagen arising from food and pharmaceutical industries. Acid and pepsin soluble collagen (ppASC and ppPSC) were extracted from the skin of sucker catfish (Pterygoplichthys pardalis) with a yield of 19.6 and 23.8% on wet weight basis respectively. The same were characterized and confirmed as type I collagen by SDS-PAGE, FTIR and UV-Vis spectroscopy, amino acid analysis, and Zeta potential. Taking into consideration the application of collagen in food industry, a food product was developed by incorporating with fresh cheese. This fortification was found to be acceptable and had not altered the taste, odor and other sensory properties of the product.
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Affiliation(s)
- Ramesh Nurubhasha
- Department of Biotechnology, Vignan's University, Guntur, Andhra Pradesh 522213 India
| | - N S Sampath Kumar
- Department of Biotechnology, Vignan's University, Guntur, Andhra Pradesh 522213 India
| | | | - G Simhachalam
- 2Department of Zoology, Acharya Nagarjuna University, Guntur, Andhra Pradesh 522510 India
| | - Vijaya R Dirisala
- Department of Biotechnology, Vignan's University, Guntur, Andhra Pradesh 522213 India
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Moody EK, Lujan NK, Roach KA, Winemiller KO. Threshold elemental ratios and the temperature dependence of herbivory in fishes. Funct Ecol 2019. [DOI: 10.1111/1365-2435.13301] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
Affiliation(s)
- Eric K. Moody
- Department of Ecology, Evolution, and Organismal Biology Iowa State University Ames Iowa
| | - Nathan K. Lujan
- Department of Biological Sciences University of Toronto Scarborough Toronto Ontario Canada
| | - Katherine A. Roach
- Department of Wildlife and Fisheries Sciences Program of Ecology and Evolutionary Biology Texas A&M University College Station Texas
| | - Kirk O. Winemiller
- Department of Wildlife and Fisheries Sciences Program of Ecology and Evolutionary Biology Texas A&M University College Station Texas
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Morales BF, Ota RP, Silva VDPE, Deus CPD. Ichthyofauna from floodplain lakes of Reserva de Desenvolvimento Sustentável Piagaçu-Purus (RDS-PP), lower rio Purus. BIOTA NEOTROPICA 2019. [DOI: 10.1590/1676-0611-bn-2019-0779] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Abstract: The ichthyofauna of the rio Purus has been little investigated, especially in its lower portion, characterized by diverse aquatic environments, especially in flooded areas. We inventoried the ichthyofauna of floodplain lakes with different management efforts in Reserva de Desenvolvimento Sustentável Piagaçu-Purus (RDS-PP), which represent important resource for commercial fishing in North region, in the first illustrated inventory of the fish fauna from lower rio Purus. We surveyed 20 lakes, classified as open access (eight lakes) and protected (12 lakes) during 2009 low water levels. A total of 2,299 individuals were collected, represented by seven orders, 25 families and 74 species. Characiformes was the most representative order in number of species and families, followed by Siluriformes, Cichliformes, Gymnotiformes, Clupeiformes, and Osteoglossiformes. Most abundant and frequent species were Pygocentrus nattereri, Triportheus angulatus, Serrasalmus sp. "2n=58", Pterygoplichthys gibbiceps, and Osteoglossum bicirrhosum. Protected lakes presented higher species richness compared to open access lakes. Similarly, protected lakes possessed 26 species occurring exclusively, with emphasis on Colossoma macropomum, an important species for fisheries due to its commercial importance. We added 44 new records of fish species for the lower rio Purus. Our results indicate the potential efficiency of zoning systems of open access and protected lakes established by local population and ruled by RDS-PP for fisheries management. Therefore, we strongly suggest its maintenance for conservation of ichthyofauna of floodplain lakes of lower rio Purus.
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Bifi AG, Oliveira RRD, Rapp Py-Daniel L. A new species of Ancistrus Kner, 1854 (Siluriformes: Loricariidae) from rio Madeira basin, Amazonas State, Brazil. NEOTROPICAL ICHTHYOLOGY 2019. [DOI: 10.1590/1982-0224-20180135] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Abstract
ABSTRACT During the Mosaico do Apuí expedition in 2006, a new species of Ancistrus was found in the rio Sucunduri, a large tributary of the rio Madeira basin in south Amazonas State. The new species has a unique color pattern for the genus and is distinguished by the presence of alternate light and dark vertical bars on the trunk. Other Ancistrini genera have species with a similar color pattern, but the new species is clearly distinguished by a lack of plates on the snout and presence of fleshy tentacles on the snout as in all Ancistrus representatives. We also provide comments on the taxonomic status of the A. bolivianus, A. heterorhynchus and A. marcapatae.
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Rapp-Py-Daniel L, Oliveira AS, Bastos DA, Ito PMM, Zuanon J, Briglia-Ferreira SR. A new species of Paralithoxus (Siluriformes: Loricariidae: Ancistrini) from the highlands of Serra da Mocidade, Roraima State, Brazilian Amazon. NEOTROPICAL ICHTHYOLOGY 2019. [DOI: 10.1590/1982-0224-20190041] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Abstract
ABSTRACT A new species of Paralithoxus is described from the Ajarani River, a small tributary of the Branco River basin, Roraima State, Brazilian Amazon. The genus Paralithoxus comprises species described from the Essequibo drainage in Guyana, Approuague and Maroni in French Guiana, Suriname River in Surinam, and more recently, from Jari and Amapá rivers, in Brazil. Despite occurring in a rock-bottomed fast-flowing stream as the other species of Paralithoxus, this is the first species of the genus collected at 900 m altitude, in the Serra da Mocidade highlands, an isolated and poorly accessible small mountain chain at the southern border of the Guiana Shield. The new species is distinguished from its congeners by having truncate teeth, color pattern with green spots on dark olive-brown background, alternating dark and light blotches on fins and by the pelvic fin being as long as or longer than the pectoral fin. Sex dimorphism of the species is described. Comments on morphology and osteology are provided and compared with congeners.
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Armbruster JW, Greene L, Lujan NK. Using Morphology to Test DNA-Based Phylogenetic Relationships within the Guiana Shield Catfish Tribe Lithoxini (Siluriformes: Loricariidae). COPEIA 2018. [DOI: 10.1643/ci-18-121] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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Bueno V, Konerat JT, Zawadzki CH, Venere PC, Blanco DR, Margarido VP. Divergent Chromosome Evolution in Hypostominae Tribes (Siluriformes: Loricariidae): Correlation of Chromosomal Data with Morphological and Molecular Phylogenies. Zebrafish 2018; 15:492-503. [DOI: 10.1089/zeb.2018.1612] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Affiliation(s)
- Vanessa Bueno
- Coordenação do Curso de Ciências Biológicas, Universidade Tecnológica Federal do Paraná, Santa Helena, Brazil
| | - Jocicléia Thums Konerat
- Centro de Ciências Biológicas e da Saúde, Universidade Estadual do Oeste do Paraná, Cascavel, Brazil
| | | | - Paulo Cesar Venere
- Laboratório de Citogenética e Genética Animal, Instituto de Biociências, Universidade Federal de Mato Grosso, Cuiabá, Brazil
| | - Daniel Rodrigues Blanco
- Coordenação do Curso de Ciências Biológicas, Universidade Tecnológica Federal do Paraná, Santa Helena, Brazil
| | - Vladimir Pavan Margarido
- Centro de Ciências Biológicas e da Saúde, Universidade Estadual do Oeste do Paraná, Cascavel, Brazil
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Rocha-Reis DA, de Oliveira Brandão K, de Almeida-Toledo LF, Pazza R, Kavalco KF. The Persevering Cytotaxonomy: Discovery of a Unique XX/XY Sex Chromosome System in Catfishes Suggests the Existence of a New, Endemic and Rare Species. Cytogenet Genome Res 2018; 156:45-55. [DOI: 10.1159/000492959] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 04/06/2018] [Indexed: 11/19/2022] Open
Abstract
The genus Hypostomus has a broad geographic distribution in Brazilian rivers and comprises armored catfishes with a very complicated taxonomy due to the absence of morphological autapomorphies. The existence of nearly 10 allopatric populations with different karyotypes suggests that Hypostomusancistroides represents a species complex in the Upper Paraná River basin. In this paper, an unusual karyotype of an isolated H. aff. ancistroides population was investigated. All specimens of this sample have 2n = 66 chromosomes except for 1 male with 2n = 67, most likely due to a supernumerary chromosome. In this population, the sexes are dimorphic, the males are heterogametic, and an XX/XY sex chromosome system is present. Phylogenetic analysis using mitochondrial and nuclear DNAs indicated that this population forms a monophyletic group separate from the other populations of H.ancistroides and may represent an incipient species.
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49
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Lujan NK, Armbruster JW, Lovejoy NR. Multilocus phylogeny, diagnosis and generic revision of the Guiana Shield endemic suckermouth armoured catfish tribe Lithoxini (Loricariidae: Hypostominae). Zool J Linn Soc 2018. [DOI: 10.1093/zoolinnean/zly025] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]
Affiliation(s)
- Nathan K Lujan
- Department of Biological Sciences, University of Toronto Scarborough, Toronto, Ontario, Canada
- Department of Natural History, Royal Ontario Museum, 100 Queen’s Park, Toronto, Ontario, Canada
| | | | - Nathan R Lovejoy
- Department of Biological Sciences, University of Toronto Scarborough, Toronto, Ontario, Canada
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50
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Bragança PHN, Costa WJEM. Time-calibrated molecular phylogeny reveals a Miocene–Pliocene diversification in the Amazon miniature killifish genus Fluviphylax (Cyprinodontiformes: Cyprinodontoidei). ORG DIVERS EVOL 2018. [DOI: 10.1007/s13127-018-0373-7] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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