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Walrant A, Sachon E. Photolabeling Strategies to Study Membranotropic Peptides Interacting with Lipids and Proteins in Membranes. Bioconjug Chem 2021; 32:1503-1514. [PMID: 34160213 DOI: 10.1021/acs.bioconjchem.1c00291] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Membranotropic peptides is a class of peptides that exert their biological action at the level of cell membranes. Understanding how they interact with their different membrane binding partners (lipids, proteins, and/or glycoconjugates) is important to decipher their mechanism of action. Affinity photolabeling is a powerful method to study noncovalent interactions and provide a submolecular picture of the contacts between two interacting partners. In this review, we give a panorama of photolabeling-based studies of the interactions between membranotropic peptides and membranes using either photoreactive lipids or peptides.
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Affiliation(s)
- Astrid Walrant
- Sorbonne Université, École Normale Supérieure, PSL University, CNRS, Laboratoire des Biomolécules, LBM, 75005, Paris, France
| | - Emmanuelle Sachon
- Sorbonne Université, École Normale Supérieure, PSL University, CNRS, Laboratoire des Biomolécules, LBM, 75005, Paris, France.,Sorbonne Université, Mass Spectrometry Sciences Sorbonne University, MS3U platform, UFR 926, UFR 927, 75005, Paris, France
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2
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Müller S, Schwieger C, Gruhle K, Garamus VM, Hause G, Meister A, Drescher S. Azide-Modified Membrane Lipids: Miscibility with Saturated Phosphatidylcholines. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2019; 35:12439-12450. [PMID: 31456406 DOI: 10.1021/acs.langmuir.9b01842] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
Abstract
In this study, we describe the miscibility of four azide-modified membrane phospholipids (azidolipids) with conventional phospholipids. The azidolipids bear an azide group at different positions of the sn-1 or sn-2 alkyl chain and they further differ in the type of linkage (ester vs ether) of the sn-2 alkyl chain. Investigations regarding the miscibility of the azidolipids with bilayer-forming phosphatidylcholines will evaluate lipid mixtures that are suitable for the production of stable azidolipid-doped liposomes. These vesicles then serve as model membranes for the incorporation of model peptides or proteins in the future. The miscibility of both types of phospholipids was studied by calorimetric assays, electron microscopy, small-angle X-ray scattering, infrared spectroscopy, and dynamic light scattering to provide a complete biophysical characterization of the mixed systems.
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Affiliation(s)
- Sindy Müller
- Institute of Pharmacy-Biophysical Pharmacy , Martin Luther University (MLU) Halle-Wittenberg , Wolfgang-Langenbeck-Strasse 4 , 06120 Halle (Saale) , Germany
| | - Christian Schwieger
- Institute of Chemistry , MLU Halle-Wittenberg , von-Danckelmann-Platz 4 , 06120 Halle (Saale) , Germany
| | - Kai Gruhle
- Institute of Pharmacy-Biophysical Pharmacy , Martin Luther University (MLU) Halle-Wittenberg , Wolfgang-Langenbeck-Strasse 4 , 06120 Halle (Saale) , Germany
| | - Vasil M Garamus
- Helmholtz-Zentrum Geesthacht (HZG): Zentrum für Material- und Küstenforschung GmbH , Max-Planck-Strasse 1 , 21502 Geesthacht , Germany
| | - Gerd Hause
- Biocenter , MLU Halle-Wittenberg , Weinbergweg 22 , 06120 Halle (Saale) , Germany
| | - Annette Meister
- ZIK HALOmem and Institute of Biochemistry and Biotechnology, Charles Tanford Protein Center , MLU Halle-Wittenberg , Kurt-Mothes-Strasse 3a , 06120 Halle (Saale) , Germany
| | - Simon Drescher
- Institute of Pharmacy-Biophysical Pharmacy , Martin Luther University (MLU) Halle-Wittenberg , Wolfgang-Langenbeck-Strasse 4 , 06120 Halle (Saale) , Germany
- Institute of Pharmacy , University of Greifswald , Friedrich-Ludwig-Jahn-Str. 17 , 17489 Greifswald , Germany
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3
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Ge SS, Chen B, Wu YY, Long QS, Zhao YL, Wang PY, Yang S. Current advances of carbene-mediated photoaffinity labeling in medicinal chemistry. RSC Adv 2018; 8:29428-29454. [PMID: 35547988 PMCID: PMC9084484 DOI: 10.1039/c8ra03538e] [Citation(s) in RCA: 47] [Impact Index Per Article: 7.8] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/24/2018] [Accepted: 07/07/2018] [Indexed: 12/21/2022] Open
Abstract
Photoaffinity labeling (PAL) in combination with a chemical probe to covalently bind its target upon UV irradiation has demonstrated considerable promise in drug discovery for identifying new drug targets and binding sites. In particular, carbene-mediated photoaffinity labeling (cmPAL) has been widely used in drug target identification owing to its excellent photolabeling efficiency, minimal steric interference and longer excitation wavelength. Specifically, diazirines, which are among the precursors of carbenes and have higher carbene yields and greater chemical stability than diazo compounds, have proved to be valuable photolabile reagents in a diverse range of biological systems. This review highlights current advances of cmPAL in medicinal chemistry, with a focus on structures and applications for identifying small molecule-protein and macromolecule-protein interactions and ligand-gated ion channels, coupled with advances in the discovery of targets and inhibitors using carbene precursor-based biological probes developed in recent decades.
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Affiliation(s)
- Sha-Sha Ge
- State Key Laboratory Breeding Base of Green Pesticide and Agricultural Bioengineering, Key Laboratory of Green Pesticide and Agricultural Bioengineering, Ministry of Education, Center for R&D of Fine Chemicals of Guizhou University Guiyang 550025 China +86-851-8829-2170 +86-851-8829-2171
| | - Biao Chen
- State Key Laboratory Breeding Base of Green Pesticide and Agricultural Bioengineering, Key Laboratory of Green Pesticide and Agricultural Bioengineering, Ministry of Education, Center for R&D of Fine Chemicals of Guizhou University Guiyang 550025 China +86-851-8829-2170 +86-851-8829-2171
| | - Yuan-Yuan Wu
- State Key Laboratory Breeding Base of Green Pesticide and Agricultural Bioengineering, Key Laboratory of Green Pesticide and Agricultural Bioengineering, Ministry of Education, Center for R&D of Fine Chemicals of Guizhou University Guiyang 550025 China +86-851-8829-2170 +86-851-8829-2171
| | - Qing-Su Long
- State Key Laboratory Breeding Base of Green Pesticide and Agricultural Bioengineering, Key Laboratory of Green Pesticide and Agricultural Bioengineering, Ministry of Education, Center for R&D of Fine Chemicals of Guizhou University Guiyang 550025 China +86-851-8829-2170 +86-851-8829-2171
| | - Yong-Liang Zhao
- State Key Laboratory Breeding Base of Green Pesticide and Agricultural Bioengineering, Key Laboratory of Green Pesticide and Agricultural Bioengineering, Ministry of Education, Center for R&D of Fine Chemicals of Guizhou University Guiyang 550025 China +86-851-8829-2170 +86-851-8829-2171
| | - Pei-Yi Wang
- State Key Laboratory Breeding Base of Green Pesticide and Agricultural Bioengineering, Key Laboratory of Green Pesticide and Agricultural Bioengineering, Ministry of Education, Center for R&D of Fine Chemicals of Guizhou University Guiyang 550025 China +86-851-8829-2170 +86-851-8829-2171
| | - Song Yang
- State Key Laboratory Breeding Base of Green Pesticide and Agricultural Bioengineering, Key Laboratory of Green Pesticide and Agricultural Bioengineering, Ministry of Education, Center for R&D of Fine Chemicals of Guizhou University Guiyang 550025 China +86-851-8829-2170 +86-851-8829-2171
- College of Pharmacy, East China University of Science & Technology Shanghai 200237 China
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4
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Jiao CY, Sachon E, Alves ID, Chassaing G, Bolbach G, Sagan S. Exploiting Benzophenone Photoreactivity To Probe the Phospholipid Environment and Insertion Depth of the Cell-Penetrating Peptide Penetratin in Model Membranes. Angew Chem Int Ed Engl 2017. [DOI: 10.1002/ange.201703465] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Affiliation(s)
- Chen-Yu Jiao
- Department of Chemistry; Sorbonne Universités, UPMC Univ Paris 06, PSL Research University, Ecole Normale Supérieure, CNRS, Laboratoire des Biomolécules (LBM); 4 place Jussieu 75005 Paris France
| | - Emmanuelle Sachon
- Department of Chemistry; Sorbonne Universités, UPMC Univ Paris 06, PSL Research University, Ecole Normale Supérieure, CNRS, Laboratoire des Biomolécules (LBM); 4 place Jussieu 75005 Paris France
- Sorbonne Universités; Plateforme de Spectrométrie de Masse et Protéomique, IBPS, FRE3631; 7-9 quai St Bernard 75005 Paris France
| | - Isabel D. Alves
- Department of Chemistry; Sorbonne Universités, UPMC Univ Paris 06, PSL Research University, Ecole Normale Supérieure, CNRS, Laboratoire des Biomolécules (LBM); 4 place Jussieu 75005 Paris France
- Present address: Chemistry and Biology of Membranes and Nanoobjects; University of Bordeaux, Bat. B14; allée Geoffroy St Hilaire 33600 Pessac France
| | - Gérard Chassaing
- Department of Chemistry; Sorbonne Universités, UPMC Univ Paris 06, PSL Research University, Ecole Normale Supérieure, CNRS, Laboratoire des Biomolécules (LBM); 4 place Jussieu 75005 Paris France
| | - Gérard Bolbach
- Department of Chemistry; Sorbonne Universités, UPMC Univ Paris 06, PSL Research University, Ecole Normale Supérieure, CNRS, Laboratoire des Biomolécules (LBM); 4 place Jussieu 75005 Paris France
- Sorbonne Universités; Plateforme de Spectrométrie de Masse et Protéomique, IBPS, FRE3631; 7-9 quai St Bernard 75005 Paris France
| | - Sandrine Sagan
- Department of Chemistry; Sorbonne Universités, UPMC Univ Paris 06, PSL Research University, Ecole Normale Supérieure, CNRS, Laboratoire des Biomolécules (LBM); 4 place Jussieu 75005 Paris France
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5
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Jiao CY, Sachon E, Alves ID, Chassaing G, Bolbach G, Sagan S. Exploiting Benzophenone Photoreactivity To Probe the Phospholipid Environment and Insertion Depth of the Cell-Penetrating Peptide Penetratin in Model Membranes. Angew Chem Int Ed Engl 2017; 56:8226-8230. [DOI: 10.1002/anie.201703465] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/03/2017] [Indexed: 01/10/2023]
Affiliation(s)
- Chen-Yu Jiao
- Department of Chemistry; Sorbonne Universités, UPMC Univ Paris 06, PSL Research University, Ecole Normale Supérieure, CNRS, Laboratoire des Biomolécules (LBM); 4 place Jussieu 75005 Paris France
| | - Emmanuelle Sachon
- Department of Chemistry; Sorbonne Universités, UPMC Univ Paris 06, PSL Research University, Ecole Normale Supérieure, CNRS, Laboratoire des Biomolécules (LBM); 4 place Jussieu 75005 Paris France
- Sorbonne Universités; Plateforme de Spectrométrie de Masse et Protéomique, IBPS, FRE3631; 7-9 quai St Bernard 75005 Paris France
| | - Isabel D. Alves
- Department of Chemistry; Sorbonne Universités, UPMC Univ Paris 06, PSL Research University, Ecole Normale Supérieure, CNRS, Laboratoire des Biomolécules (LBM); 4 place Jussieu 75005 Paris France
- Present address: Chemistry and Biology of Membranes and Nanoobjects; University of Bordeaux, Bat. B14; allée Geoffroy St Hilaire 33600 Pessac France
| | - Gérard Chassaing
- Department of Chemistry; Sorbonne Universités, UPMC Univ Paris 06, PSL Research University, Ecole Normale Supérieure, CNRS, Laboratoire des Biomolécules (LBM); 4 place Jussieu 75005 Paris France
| | - Gérard Bolbach
- Department of Chemistry; Sorbonne Universités, UPMC Univ Paris 06, PSL Research University, Ecole Normale Supérieure, CNRS, Laboratoire des Biomolécules (LBM); 4 place Jussieu 75005 Paris France
- Sorbonne Universités; Plateforme de Spectrométrie de Masse et Protéomique, IBPS, FRE3631; 7-9 quai St Bernard 75005 Paris France
| | - Sandrine Sagan
- Department of Chemistry; Sorbonne Universités, UPMC Univ Paris 06, PSL Research University, Ecole Normale Supérieure, CNRS, Laboratoire des Biomolécules (LBM); 4 place Jussieu 75005 Paris France
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6
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Lindner S, Gruhle K, Schmidt R, Garamus VM, Ramsbeck D, Hause G, Meister A, Sinz A, Drescher S. Azide-Modified Membrane Lipids: Synthesis, Properties, and Reactivity. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2017; 33:4960-4973. [PMID: 28457130 DOI: 10.1021/acs.langmuir.7b00228] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
Abstract
In the present work, we describe the synthesis and the temperature-dependent behavior of photoreactive membrane lipids as well as their capability to study peptide/lipid interactions. The modified phospholipids contain an azide group either in the middle part or at the end of an alkyl chain and also differ in the linkage (ester vs ether) of the second alkyl chain. The temperature-dependent aggregation behavior of the azidolipids was studied using differential scanning calorimetry (DSC), Fourier-transform infrared (FTIR) spectroscopy, and small-angle X-ray scattering (SAXS). Aggregate structures were visualized by stain and cryo transmission electron microscopy (TEM) and were further characterized by dynamic light scattering (DLS). We show that the position of the azide group and the type of linkage of the alkyl chain at the sn-2 position of the glycerol influences the type of aggregates formed as well as their long-term stability: P10AzSPC and r12AzSHPC show the formation of extrudable liposomes, which are stable in size during storage. In contrast, azidolipids that carry a terminal azido moiety either form extrudable liposomes, which show time-dependent vesicle fusion (P15AzPdPC), or self-assemble in large sheet-like, nonextrudable aggregates (r15AzPdHPC) where the lipid molecules are arranged in an interdigitated orientation at temperatures below Tm (LβI phase). Finally, a P10AzSPC:DMPC mixture was used for photochemically induced cross-linking experiments with a transmembrane peptide (WAL-peptide) to demonstrate the applicability of the azidolipids for the analysis of peptide/lipid interactions. The efficiency of photo-cross-linking was monitored by attenuated total reflection infrared (ATR-IR) spectroscopy and mass spectrometry (MS).
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Affiliation(s)
- Sindy Lindner
- Institute of Pharmacy - Pharmaceutical Chemistry and Bioanalytics, Martin Luther University (MLU) Halle-Wittenberg , Wolfgang-Langenbeck-Strasse 4, 06120 Halle (Saale), Germany
- Institute of Pharmacy - Biophysical Pharmacy, MLU Halle-Wittenberg , Wolfgang-Langenbeck-Strasse 4, 06120 Halle (Saale), Germany
| | - Kai Gruhle
- Institute of Pharmacy - Biophysical Pharmacy, MLU Halle-Wittenberg , Wolfgang-Langenbeck-Strasse 4, 06120 Halle (Saale), Germany
| | - Rico Schmidt
- Institute of Pharmacy - Pharmaceutical Chemistry and Bioanalytics, Martin Luther University (MLU) Halle-Wittenberg , Wolfgang-Langenbeck-Strasse 4, 06120 Halle (Saale), Germany
| | - Vasil M Garamus
- Helmholtz-Zentrum Geesthacht: Zentrum für Material und Küstenforschung GmbH (HZG), Max-Planck-Strasse 1, 21502 Geesthacht, Germany
| | - Daniel Ramsbeck
- Fraunhofer Institute for Cell Therapy and Immunology IZI , Weinbergweg 22, 06120 Halle (Saale), Germany
| | - Gerd Hause
- Biocenter, MLU Halle-Wittenberg , Weinbergweg 22, 06120 Halle (Saale), Germany
| | - Annette Meister
- Institute of Chemistry and Institute of Biochemistry and Biotechnology, MLU Halle-Wittenberg , von-Danckelmann-Platz 4, 06120 Halle (Saale), Germany
| | - Andrea Sinz
- Institute of Pharmacy - Pharmaceutical Chemistry and Bioanalytics, Martin Luther University (MLU) Halle-Wittenberg , Wolfgang-Langenbeck-Strasse 4, 06120 Halle (Saale), Germany
| | - Simon Drescher
- Institute of Pharmacy - Biophysical Pharmacy, MLU Halle-Wittenberg , Wolfgang-Langenbeck-Strasse 4, 06120 Halle (Saale), Germany
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7
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Haberkant P, Holthuis JCM. Fat & fabulous: bifunctional lipids in the spotlight. Biochim Biophys Acta Mol Cell Biol Lipids 2014; 1841:1022-30. [PMID: 24440797 DOI: 10.1016/j.bbalip.2014.01.003] [Citation(s) in RCA: 44] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/02/2013] [Revised: 01/02/2014] [Accepted: 01/05/2014] [Indexed: 01/25/2023]
Abstract
Understanding biological processes at the mechanistic level requires a systematic charting of the physical and functional links between all cellular components. While protein-protein and protein-nucleic acid networks have been subject to many global surveys, other critical cellular components such as membrane lipids have rarely been studied in large-scale interaction screens. Here, we review the development of photoactivatable and clickable lipid analogues-so-called bifunctional lipids-as novel chemical tools that enable a global profiling of lipid-protein interactions in biological membranes. Recent studies indicate that bifunctional lipids hold great promise in systematic efforts to dissect the elaborate crosstalk between proteins and lipids in live cells and organisms. This article is part of a Special Issue entitled Tools to study lipid functions.
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Affiliation(s)
- Per Haberkant
- European Molecular Biology Laboratory, Meyerhofstrasse 1, 69117 Heidelberg, Germany.
| | - Joost C M Holthuis
- Molecular Cell Biology, University of Osnabrück, Barbarastrasse 13, 49076 Osnabrück, Germany.
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8
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Xia Y, Peng L. Photoactivatable Lipid Probes for Studying Biomembranes by Photoaffinity Labeling. Chem Rev 2013; 113:7880-929. [DOI: 10.1021/cr300419p] [Citation(s) in RCA: 64] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
Affiliation(s)
- Yi Xia
- Aix-Marseille Université, Centre Interdisciplinaire de Nanoscience de Marseille, CNRS UMR 7325, Campus de Luminy, 13288 Marseille, France
| | - Ling Peng
- Aix-Marseille Université, Centre Interdisciplinaire de Nanoscience de Marseille, CNRS UMR 7325, Campus de Luminy, 13288 Marseille, France
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9
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Das J. Aliphatic diazirines as photoaffinity probes for proteins: recent developments. Chem Rev 2011; 111:4405-17. [PMID: 21466226 DOI: 10.1021/cr1002722] [Citation(s) in RCA: 200] [Impact Index Per Article: 15.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
Affiliation(s)
- Joydip Das
- Department of Pharmacological and Pharmaceutical Sciences, College of Pharmacy, University of Houston, Houston, Texas 77204, USA.
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10
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Blencowe A, Hayes W. Development and application of diazirines in biological and synthetic macromolecular systems. SOFT MATTER 2005; 1:178-205. [PMID: 32646075 DOI: 10.1039/b501989c] [Citation(s) in RCA: 111] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
Abstract
Many different reagents and methodologies have been utilised for the modification of synthetic and biological macromolecular systems. In addition, an area of intense research at present is the construction of hybrid biosynthetic polymers, comprised of biologically active species immobilised or complexed with synthetic polymers. One of the most useful and widely applicable techniques available for functionalisation of macromolecular systems involves indiscriminate carbene insertion processes. The highly reactive and non-specific nature of carbenes has enabled a multitude of macromolecular structures to be functionalised without the need for specialised reagents or additives. The use of diazirines as stable carbene precursors has increased dramatically over the past twenty years and these reagents are fast becoming the most popular photophors for photoaffinity labelling and biological applications in which covalent modification of macromolecular structures is the basis to understanding structure-activity relationships. This review reports the synthesis and application of a diverse range of diazirines in macromolecular systems.
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Affiliation(s)
- Anton Blencowe
- School of Chemistry, The University of Reading, Whiteknights, Reading, Berkshire, UKRG6 6AD.
| | - Wayne Hayes
- School of Chemistry, The University of Reading, Whiteknights, Reading, Berkshire, UKRG6 6AD.
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11
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Fredriksen SB, Dollé V, Yamamoto M, Nakatani Y, Goeldner M, Ourisson G. Increased Selectivity of a Simple Photosensitive Probe in the Presence of Large Proportions of Cholesterol. ACTA ACUST UNITED AC 2003. [DOI: 10.1002/anie.199411761] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
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12
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Abstract
This report summarizes our efforts towards depth-dependent analysis of membranes by design of suitable fluorescent and photoactivable lipid probes, which can be incorporated into membranes. The objective of depth-dependent analysis has been two fold, one to obtain information on lipid domains and other on transmembrane domains of membrane-bound proteins. In view of increasing importance of lipid rafts and other localized domain and limited success in case of structure determination of membrane-bound proteins vis-à-vis their soluble counterparts, it is tempting to rapidly attach fluorescent or photoactivable probes to lipids to get a probes where relatively little attention is paid to design of such probes. We have shown here how careful design of such probes is required to immobilize such probes in membranes for effective depth-dependent analysis of membranes. An effective design has become important when identification of putative transmembrane domains predicted primarily from the genome data based on hydropathy plots, often needs confirmation by contemporary methodology.
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Affiliation(s)
- Anil K Lala
- Biomembrane Lab, Department of Chemistry and Biotechnology Center, Indian Institute of Technology Bombay, Powai, Mumbai 400 076, India.
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13
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Brunner J, Franzusoff AJ, Luescher B, Zugliani C, Semenza G. Membrane protein topology: amino acid residues in a putative transmembrane .alpha.-helix of bacteriorhodopsin labeled with the hydrophobic carbene-generating reagent 3-(trifluoromethyl)-3-(m-[125I]iodophenyl)diazirine. Biochemistry 2002. [DOI: 10.1021/bi00341a021] [Citation(s) in RCA: 38] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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14
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Cai K, Itoh Y, Khorana HG. Mapping of contact sites in complex formation between transducin and light-activated rhodopsin by covalent crosslinking: use of a photoactivatable reagent. Proc Natl Acad Sci U S A 2001; 98:4877-82. [PMID: 11320237 PMCID: PMC33131 DOI: 10.1073/pnas.051632898] [Citation(s) in RCA: 115] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
Interaction of light-activated rhodopsin with transducin (T) is the first event in visual signal transduction. We use covalent crosslinking approaches to map the contact sites in interaction between the two proteins. Here we use a photoactivatable reagent, N-[(2-pyridyldithio)-ethyl], 4-azido salicylamide. The reagent is attached to the SH group of cytoplasmic monocysteine rhodopsin mutants by a disulfide-exchange reaction with the pyridylthio group, and the derivatized rhodopsin then is complexed with T by illumination at lambda >495 nm. Subsequent irradiation of the complex at lambda310 nm generates covalent crosslinks between the two proteins. Crosslinking was demonstrated between T and a number of single cysteine rhodopsin mutants. However, sites of crosslinks were investigated in detail only between T and the rhodopsin mutant S240C (cytoplasmic loop V-VI). Crosslinking occurred predominantly with T(alpha). For identification of the sites of crosslinks in T(alpha), the strategy used involved: (i) derivatization of all of the free cysteines in the crosslinked proteins with N-ethylmaleimide; (ii) reduction of the disulfide bond linking the two proteins and isolation of all of the T(alpha) species carrying the crosslinked moiety with a free SH group; (iii) adduct formation of the latter with the N-maleimide moiety of the reagent, maleimido-butyryl-biocytin, containing a biotinyl group; (iv) trypsin degradation of the resulting T(alpha) derivatives and isolation of T(alpha) peptides carrying maleimido-butyryl-biocytin by avidin-agarose chromatography; and (v) identification of the isolated peptides by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry. We found that crosslinking occurred mainly to two C-terminal peptides in T(alpha) containing the amino acid sequences 310-313 and 342-345.
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Affiliation(s)
- K Cai
- Departments of Biology and Chemistry, Massachusetts Institute of Technology, Cambridge, MA 02139, USA
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15
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Ogawa Y, Hahn W, Garnier P, Higashi N, Massotte D, Metz-Boutigue MH, Rousseau B, Sunamoto J, Ourisson G, Nakatani Y. Mid-Membrane Photolabeling of the Transmembrane Domain of Glycophorin A in Phospholipid Vesicles. Angew Chem Int Ed Engl 2001. [DOI: 10.1002/1521-3757(20010302)113:5<970::aid-ange970>3.0.co;2-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
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16
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Ogawa Y, Hahn W, Garnier P, Higashi N, Massotte D, Metz-Boutigue MH, Rousseau B, Sunamoto J, Ourisson G, Nakatani Y. Mid-Membrane Photolabeling of the Transmembrane Domain of Glycophorin A in Phospholipid Vesicles. Angew Chem Int Ed Engl 2001; 40:944-946. [DOI: 10.1002/1521-3773(20010302)40:5<944::aid-anie944>3.0.co;2-o] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/12/2000] [Indexed: 01/05/2023]
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17
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Yao J, Shoubridge EA. Expression and functional analysis of SURF1 in Leigh syndrome patients with cytochrome c oxidase deficiency. Hum Mol Genet 1999; 8:2541-9. [PMID: 10556303 DOI: 10.1093/hmg/8.13.2541] [Citation(s) in RCA: 85] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022] Open
Abstract
Leigh syndrome (LS) associated with cytochrome c oxidase (COX) deficiency is an autosomal recessive neurodegenerative disorder caused by mutations in SURF1. Although SURF1 is ubiquitously expressed, its expression is lower in brain than in other highly aerobic tissues. All reported SURF1 mutations are loss of function, predicting a truncated protein (hSurf1) product. Western blot analysis with anti-hSurf1 antibodies demonstrated a specific 30 kDa protein in control fibroblasts, but no protein in LS patient cells. Steady-state levels of both nuclear- and mitochondrial-encoded COX subunits were also markedly reduced in patient cells, consistent with a failure to assemble or maintain a normal amount of the enzyme complex. An epitope (FLAG)-tagged hSurf1 was targeted to mitochondria in COS7 cells and a mitochondrial import assay showed that the hSurf1 precursor protein (35 kDa) was imported and processed to its mature form (30 kDa) in a membrane potential-dependent fashion. The protein was resistant to alkaline carbonate extraction and susceptible to proteinase K digestion in mitoplasts. Mutant proteins in which the N-terminal transmembrane domain or central loop were deleted, or the C-terminal transmembrane domain disrupted, did not accumulate and could not rescue COX activity in patient cells. Co-expression of the N- and C-terminal transmembrane domains as independent entities also failed to rescue the enzyme deficiency. These data demonstrate that hSurf1 is an integral inner membrane protein with an essential role in the assembly or maintenance of the COX complex and that insertion of both transmembrane domains in the intact protein is necessary for function.
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Affiliation(s)
- J Yao
- Montreal Neurological Institute and Department of Human Genetics, McGill University, 3801 University Street, Montreal H3A 2B4, Canada
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18
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Affiliation(s)
- F Knoll
- Kekulé-Institut für Organische Chemie und Biochemie, Universität Bonn, Germany
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19
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Abstract
The three-dimensional structure of the dimeric transmembrane domain of glycophorin A (GpA) was determined by solution nuclear magnetic resonance spectroscopy of a 40-residue peptide solubilized in aqueous detergent micelles. The GpA membrane-spanning alpha helices cross at an angle of -40 degrees and form a small but well-packed interface that lacks intermonomer hydrogen bonds. The structure provides an explanation for the previously characterized sequence dependence of GpA dimerization and demonstrates that van der Waals interactions alone can mediate stable and specific associations between transmembrane helices.
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Affiliation(s)
- K R MacKenzie
- Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT 06520-8114, USA
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20
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Kotzyba-Hibert F, Kapfer I, Goeldner M. Neue Entwicklungen bei der Photoaffinitätsmarkierung. Angew Chem Int Ed Engl 1995. [DOI: 10.1002/ange.19951071204] [Citation(s) in RCA: 59] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
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21
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Pease RJ, Leiper JM, Harrison GB, Scott J. Studies on the translocation of the amino terminus of apolipoprotein B into the endoplasmic reticulum. J Biol Chem 1995; 270:7261-71. [PMID: 7706266 DOI: 10.1074/jbc.270.13.7261] [Citation(s) in RCA: 21] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/26/2023] Open
Abstract
Apolipoprotein (apo) B is either co-translationally assembled into lipoproteins, or becomes associated with the membrane of the endoplasmic reticulum (ER) and is subsequently degraded. It has been proposed that apoB undergoes a novel process of translocation which generates cytoplasmically exposed apoB in the ER of hepatic and non-hepatic cells. Transmembrane forms of apoB can also be generated by in vitro translation (Chuck, S. L., and Lingappa, V. R. (1992) Cell 68, 9-21), which might explain the origin of untranslocated apoB in vivo. Here we have investigated a protocol which generates transmembrane forms of apoB during in vitro translation of truncated RNA transcripts. We observe that apoB can become transmembrane at sites of ribosome pausing and be held in this configuration by persistence of tRNA on the peptide chains. Ribosome pausing also occurs at these same sites in the absence of acceptor microsomes. Transmembrane topology can be generated at sites of ribosome pausing in a cytosolic protein, sea urchin cyclin when fused to a signal sequence. Mapping of the ribosome pause sites in apoB and in cyclin revealed no amino acid sequence homology. Chimeric constructs with engineered downstream glycosylation sites showed no evidence that ribosome pause sequences affect translocation of transcripts with termination codons. Transmembrane forms of apoB and cyclin were not generated during translocation into the ER in transfected COS cells.
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Affiliation(s)
- R J Pease
- Medical Research Council Molecular Medicine Group, Royal Postgraduate Medical School, London, United Kingdom
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22
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Challou N, Goormaghtigh E, Cabiaux V, Conrath K, Ruysschaert JM. Sequence and structure of the membrane-associated peptide of glycophorin A. Biochemistry 1994; 33:6902-10. [PMID: 8204624 DOI: 10.1021/bi00188a020] [Citation(s) in RCA: 36] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]
Abstract
Glycophorin A (GPA) has been reconstituted into dimyristoylphosphatidylcholine vesicles and digested with proteinase K to identify the membrane domain and to characterize its structure and orientation. After digestion of the inner and outer domain of GPA by protease action restricted to the aqueous phase, a protected peptide migrates on an electrophoresis gel as a 7.5-kDa dimer (His66-Ile95). The secondary structure and orientation in a lipid bilayer of the 7.5-kDa dimer have been studied by Fourier transform infrared spectroscopy. Our proteolytic and spectroscopic data are in agreement with a topological model in which the His66-Glu72 peptide adopts a beta-sheet conformation and is oriented parallel to the lipid-water interface and the Ile73-Ile95 domain is helical and oriented parallel to the lipid acyl chains, in a transmembrane configuration. Digestion of the domain protruding to the outside of the liposome generates "head-head" and "head-tail" dimers of 16 and 38 kDa, respectively. This observation is discussed in terms of the specificity of the dimer formation process.
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Affiliation(s)
- N Challou
- Laboratoire de Chimie Physique des Macromolécules aux Interfaces, Free University Brussels, Belgium
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23
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Fredriksen SB, Dollé V, Yamamoto M, Nakatani Y, Goeldner M, Ourisson G. Selektivitätserhöhung einer einfachen photosensitiven Sonde in Gegenwart großer Mengen Cholesterin. Angew Chem Int Ed Engl 1994. [DOI: 10.1002/ange.19941061115] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
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24
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Yamamoto M, Warnock WA, Milon A, Nakatani Y, Ourisson G. Selektive Photomarkierung in der Mitte von Doppelschichten mit einer photosensitiven Transmembransonde. Angew Chem Int Ed Engl 1993. [DOI: 10.1002/ange.19931050236] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
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25
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Hayashi H, Nagata A, Hinode D, Sato M, Nakamura R. Survey of a receptor protein in human erythrocytes for hemagglutinin of Porphyromonas gingivalis. ORAL MICROBIOLOGY AND IMMUNOLOGY 1992; 7:204-11. [PMID: 1328997 DOI: 10.1111/j.1399-302x.1992.tb00026.x] [Citation(s) in RCA: 18] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
Abstract
The purpose of this study is to survey a receptor protein in human erythrocyte membrane for the hemagglutinin (HA) of Porphyromonas gingivalis. Human erythrocytes were modified by either chymotrypsin or P. gingivalis HA along with the disappearance of their hemagglutinating ability and the removal of the band 3 protein. By preparative electrophoresis, this protein was isolated and purified from human erythrocytes. The purified protein showed strong inhibitory activity for hemagglutination and the binding to P. gingivalis cells, whose binding sites were calculated to be approximately 9000, suggesting its binding to the active site of HA. Hemagglutinin purified from P. gingivalis by affinity absorption to sheep erythrocyte ghosts possessed strong trypsin-like activity, and both the HA and the enzyme activities were inhibited by arginine. Specific modification of arginyl residues in human erythrocytes by phenylglyoxal diminished the hemagglutinating ability. From the similarity of the inhibition profile and possible active sites between HA and the trypsin-like protease, it is suggested that hemagglutination may occur as a result of the primary reaction of the enzyme (protease) and the substrate. These results suggest that band 3 may be a key protein in human erythrocyte membrane for HA from P. gingivalis and its binding sites may be arginyl residues of the protein.
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Affiliation(s)
- H Hayashi
- School of Dentistry, University of Tokushima, Japan
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26
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Papini E, Santucci A, Schiavo G, Domenighini M, Neri P, Rappuoli R, Montecucco C. Tyrosine 65 is photolabeled by 8-azidoadenine and 8-azidoadenosine at the NAD binding site of diphtheria toxin. J Biol Chem 1991. [DOI: 10.1016/s0021-9258(18)52271-7] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022] Open
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27
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Sigrist H, Mühlemann M, Dolder M. Philicity of amino acid side-chains for photogenerated carbenes. JOURNAL OF PHOTOCHEMISTRY AND PHOTOBIOLOGY B-BIOLOGY 1990. [DOI: 10.1016/1011-1344(90)85162-p] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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28
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Meier EM, Schummer D, Sandhoff K. Evidence for the presence of water within the hydrophobic core of membranes. Chem Phys Lipids 1990; 55:103-13. [PMID: 2090357 DOI: 10.1016/0009-3084(90)90071-x] [Citation(s) in RCA: 19] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
Abstract
The photoreactive ganglioside derivative N-diazirinyl-lyso-GM1 was incorporated into liposomes and calf brain microsomes. After photoactivation at 350 nm it was found to dimerize with phospholipids such as phosphatidylcholine and phosphatidylserine and with cholesterol. The predominant covalent reaction product, however, was the alcohol, resulting from the reaction with water. It amounted to about 45% of the covalent reaction products in calf brain microsomes and to about 58% in pure phosphatidylcholine liposomes. Based on the temperature dependence of the photoreaction of N-diazirinyl-lyso-GM1 in liposomes consisting of 1,2-dipalmitoyl-sn-glycero-3-phosphoryl-choline or 1,2-distearoyl-sn-glycero- 3-phosphorylcholine and on affinity labeling experiments with cholera toxin we propose that the predominant reaction of N-diazirinyl-lyso-GM1 with water is due to the presence of water within the hydrophobic core of artificial and biological membranes.
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Affiliation(s)
- E M Meier
- Institute of Organic Chemistry and Biochemistry, University of Bonn, F.R.G
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29
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Kinnunen PM, Klopf FH, Bastiani CA, Gelfman CM, Lange LG. 12-[(5-iodo-4-azido-2-hydroxybenzoyl)amino]dodecanoic acid: biological recognition by cholesterol esterase and acyl-CoA:cholesterol O-acyltransferase. Biochemistry 1990; 29:1648-54. [PMID: 2334723 DOI: 10.1021/bi00458a042] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
Abstract
Potential probes of protein cholesterol and fatty acid binding sites, namely, 12-[(5-iodo-4-azido-2-hydroxybenzoyl)amino]dodecanoate (IFA) and its coenzyme A (IFA:CoA) and cholesteryl (IFA:CEA) esters, were synthesized. These radioactive, photoreactive lipid analogues were recognized as substrates and inhibitors of acyl-CoA:cholesterol O-acyltransferase (ACAT) and cholesterol esterase, neutral lipid binding enzymes which are key elements in the regulation of cellular cholesterol metabolism. In the dark, IFA reversibly inhibited cholesteryl [14C]oleate hydrolysis by purified bovine pancreatic cholesterol esterase with an apparent Ki of 150 microM. Cholesterol esterase inhibition by IFA became irreversible after photolysis with UV light and oleic acid (1 mM) provided 50% protection against inactivation. Incubation of homogeneous bovine pancreatic cholesterol esterase with IFA:CEA resulted in its hydrolysis to IFA and cholesterol, indicating recognition of IFA:CEA as a substrate by cholesterol esterase. The coenzyme A ester, IFA:CoA, was a reversible inhibitor of microsomal ACAT activity under dark conditions (apparent Ki = 20 microM), and photolysis resulted in irreversible inhibition of enzyme activity with 87% efficiency. IFA:CoA was also recognized as a substrate by both liver and aortic microsomal ACATs, with resultant synthesis of 125IFA:CEA. IFA and its derivatives, IFA:CEA and IFA:CoA, are thus inhibitors and substrates for cholesterol esterase and ACAT. Biological recognition of these photoaffinity lipid analogues will facilitate the identification and structural analysis of hitherto uncharacterized protein lipid binding sites.
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Affiliation(s)
- P M Kinnunen
- Department of Medicine, Jewish Hospital, St. Louis, Missouri 63110
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30
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Pinnaduwage P, Huang L. The role of protein-linked oligosaccharide in the bilayer stabilization activity of glycophorin A for dioleoylphosphatidylethanolamine liposomes. BIOCHIMICA ET BIOPHYSICA ACTA 1989; 986:106-14. [PMID: 2819088 DOI: 10.1016/0005-2736(89)90278-2] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]
Abstract
The importance of the protein-linked carbohydrates for the stabilization of dioleoylphosphatidylethanolamine (DOPE) bilayers has been investigated using glycophorin A, the major sialoglycoprotein of the human erythrocyte membrane, as a stabilizer. Two major types of glycophorin, differing in the sialic acid content, were used in the study. Type MM contains 19.2 +/- 2.5 sialic residues per molecule of glycophorin, and type NN contains 10.8 +/- 1.2. Type MM could stabilize DOPE bilayers at 0.5 mol%, whereas type NN was unable to do so even at 1 mol%. The importance of the sialic acid content to the stabilization activity of glycophorin was further confirmed by the observation that the neuraminidase-treated type MM showed a lower stabilization activity than the untreated type. Since type NN had no stabilizing activity, we attempted to couple a trisaccharide, NeuNAc----Gal----Glc, to type NN by reductive amination. 2.5 +/- 0.8 saccharide chains were added per molecule of type NN. The trisaccharide-attached type NN showed a greater stabilization activity than the parent type NN molecule, indicating again that the sialic acid content of the stabilizer molecule determines the stabilization activity. Addition of wheat-germ agglutinin (WGA), which binds to the sialic acid residues of a glycoprotein, to type MM-stabilized liposomes caused rapid aggregation and destabilization of liposomes, resulting in leakage of an entrapped marker, calcein. The aggregation increased with increasing amount of the lectin; however, the leakage rate was maximum at an optimum concentration of WGA. These results are discussed in terms of the role of sialic acid in the interfacial hydration and charge repulsion which determines the DOPE bilayer stability.
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Affiliation(s)
- P Pinnaduwage
- Department of Biochemistry, University of Tennessee, Knoxville 37996-0840
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31
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Pradhan D, Williamson P, Schlegel RA. A photoactivable phospholipid analogue that specifically labels membrane cytoskeletal proteins of intact erythrocytes. Biochemistry 1989; 28:6943-9. [PMID: 2489483 DOI: 10.1021/bi00443a025] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
Abstract
A radioactive photoactivable analogue of phosphatidylethanolamine, 2-(2-azido-4-nitro-benzoyl)-1-acyl-sn-glycero-3-phospho[14C]ethanolamine ([14C]AzPE), was synthesized. Upon incubation with erythrocytes in the dark, about 90% of [14C]AzPE spontaneously incorporated into the cells; of this fraction, about 90% associated with the membrane, all of it noncovalently. Upon photoactivation, 3-4% of the membrane-associated probe was incorporated into protein. Analysis of this fraction by sodium dodecyl sulfate-polyacrylamide gel electrophoresis, as well as extraction of labeled membranes with alkali or detergent, showed that the probe preferentially labeled cytoskeletal proteins. [14C]AzPE appears to be a useful tool for the study of lipid-protein interactions at the cytoplasmic face of the plasma membrane of intact cells.
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Affiliation(s)
- D Pradhan
- Department of Molecular and Cell Biology, Pennsylvania State University 16802
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32
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Harter C, James P, Bächi T, Semenza G, Brunner J. Hydrophobie Binding of the Ectodomain of Influenza Hemagglutinin to Membranes Occurs through the “Fusion Peptide”. J Biol Chem 1989. [DOI: 10.1016/s0021-9258(18)83370-1] [Citation(s) in RCA: 89] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022] Open
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33
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34
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Guillory RJ. Design, implementation and pitfalls of photoaffinity labelling experiments in in vitro preparations. General principles. Pharmacol Ther 1989; 41:1-25. [PMID: 2652148 DOI: 10.1016/0163-7258(89)90100-9] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]
Affiliation(s)
- R J Guillory
- Department of Biochemistry and Biophysics, John A. Burns School of Medicine, University of Hawaii, Honolulu 96822
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35
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Sami M, Dempsey C. Hydrogen exchange from the transbilayer hydrophobic peptide of glycophorin reconstituted in lipid bilayers. FEBS Lett 1988; 240:211-5. [PMID: 3191995 DOI: 10.1016/0014-5793(88)80370-3] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023]
Abstract
The hydrophobic transbilayer peptide of erythrocyte glycophorin has been purified following exchange of tritium into the backbone amides, and reconstituted in egg phosphatidylcholine micelles. Analysis of tritium exchange from the backbone amides of the membrane-reconstituted peptide shows that about two of the amides are virtually non-exchangeable, about 10 are slowed by factors of 10(7) relative to free amides in unstructured water soluble peptides and the remainder of the amides (about 20) have slowing factors of less than 1000. These classes of amides are proposed to reflect the stability of the peptide with respect to hydrogen bond breaking fluctuations and the accessibility of the amides to exchange catalysts in different regions of the bilayer.
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Affiliation(s)
- M Sami
- Biochemistry Department, Oxford University, England
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36
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A new major transmembrane glycoprotein, gp155, in goat erythrocytes. Isolation and characterization of its association to cytoskeleton through binding with band 3-ankyrin complex. J Biol Chem 1988. [DOI: 10.1016/s0021-9258(19)77901-0] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022] Open
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37
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38
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Wessels HP, Spiess M. Insertion of a multispanning membrane protein occurs sequentially and requires only one signal sequence. Cell 1988; 55:61-70. [PMID: 2844410 DOI: 10.1016/0092-8674(88)90009-8] [Citation(s) in RCA: 160] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]
Abstract
To study the insertion of multispanning membrane proteins into the endoplasmic reticulum, we constructed novel proteins on the cDNA level by repeating, up to four times, the internal signal-anchor domain of the asialoglycoprotein receptor H1. Upon in vitro translation in the presence of microsomes, these polypeptides are indeed inserted as polytopic membrane proteins. The first hydrophobic domain functions as a signal and the second as a stop-transfer sequence, while the third initiates a second translocation process, halted again by the fourth. We were able to demonstrate that insertion occurs sequentially, starting with the first apolar segment from the amino terminus. By replacing the original signal-anchor domains by a mutant sequence not recognized by signal recognition particle (SRP), it was shown that only the first hydrophobic domain needs to be a signal sequence and that the second translocation event does not require SRP.
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Affiliation(s)
- H P Wessels
- Department of Biochemistry, University of Basel, Switzerland
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39
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Pilar Fernandez M, Selmin O, Martin GR, Yamada Y, Pfäffle M, Deutzmann R, Mollenhauer J, von der Mark K. The structure of anchorin CII, a collagen binding protein isolated from chondrocyte membrane. J Biol Chem 1988. [DOI: 10.1016/s0021-9258(18)60653-2] [Citation(s) in RCA: 50] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022] Open
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40
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41
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Kyte J, Xu KY, Bayer R. Demonstration that lysine-501 of the alpha polypeptide of native sodium and potassium ion activated adenosinetriphosphatase is located on its cytoplasmic surface. Biochemistry 1987; 26:8350-60. [PMID: 2831943 DOI: 10.1021/bi00399a049] [Citation(s) in RCA: 29] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]
Abstract
Evidence that the peptide HLLVMKGAPER, which can be released from intact sodium and potassium ion activated adenosinetriphosphatase by tryptic digestion, is located on the cytoplasmic surface of the native enzyme has been obtained. An immunoadsorbent directed against the carboxy-terminal sequence of this tryptic peptide has been constructed. The peptide KGAPER was synthesized by solid-phase techniques. Antibodies against the sequence -GAPER were purified by immunoadsorption, using the synthetic peptide attached to agarose beads. These antibodies, in turn, were coupled to agarose beads to produce an immunoadsorbent. Sealed, right-side-out vesicles, prepared from canine kidneys, were labeled with pyridoxal phosphate and sodium [3H]borohydride in the absence or presence of saponin, respectively. A tryptic digest of these labeled vesicles was passed over the immunoadsorbent. Large increases in the incorporation of radioactivity into the peptides bound by the immunoadsorbent were observed in the digests obtained from the vesicles exposed to saponin. From the results of several control experiments examining the labeling reaction as applied to these vesicles, it could be concluded that this increase in incorporation resulted only from the access that the reagents gained to the inside of the vesicles in the presence of saponin and that the increase in the extent of modification was due to the cytoplasmic disposition of this segment in the native enzyme.
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Affiliation(s)
- J Kyte
- Department of Chemistry, University of California, San Diego, La Jolla 92093
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42
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Pradhan D, Lala AK. Photochemical labeling of membrane hydrophobic core of human erythrocytes using a new photoactivable reagent 2-[3H]diazofluorene. J Biol Chem 1987. [DOI: 10.1016/s0021-9258(18)47555-2] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022] Open
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43
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Middlemas DS, Raftery MA. Identification of subunits of acetylcholine receptor that interact with a cholesterol photoaffinity probe. Biochemistry 1987; 26:1219-23. [PMID: 3567168 DOI: 10.1021/bi00379a003] [Citation(s) in RCA: 52] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]
Abstract
All four subunits of the acetylcholine receptor in membrane vesicles isolated from Torpedo californica have been labeled with [3H]cholesteryl diazoacetate. As this probe incorporates into lipid bilayers analogously to cholesterol, this result indicates that acetylcholine receptor interacts with cholesterol. This investigation also demonstrates that this probe is a useful reagent for studying the interaction of cholesterol with membrane proteins.
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44
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Deber CM, Brandl CJ, Deber RB, Hsu LC, Young XK. Amino acid composition of the membrane and aqueous domains of integral membrane proteins. Arch Biochem Biophys 1986; 251:68-76. [PMID: 3789746 DOI: 10.1016/0003-9861(86)90052-4] [Citation(s) in RCA: 54] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
Abstract
To identify residues which might impart transport capability to the intramembranous regions of transport proteins, we surveyed available data for the 9991 amino acids contained in the aqueous and intramembranous regions of 24 integral membrane proteins: 10 transport (T) proteins and 14 nontransport (NT) proteins. Statistical comparison of percentage occurrence of each amino acid within T and NT samples provided a measure of "typical" composition of T and NT membrane-spanning regions, and showed that the residues partition into membrane and aqueous domains largely in accord with expectation from hydropathy indices. Comparison of aqueous and membrane domain composition between protein categories revealed a statistically similar distribution of residues in aqueous domains, but significant differences in membrane domains: seven residues (Asn, Asp, Gln, Glu, Phe, Pro, Tyr) were preferred in membrane regions of T proteins, and one (Val) was selectively excluded. Chemical and structural considerations suggested that three of these residues--Asn, Tyr, and Pro--are the most likely functional participants in transport processes.
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45
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Ross GF, Notter RH, Meuth J, Whitsett JA. Phospholipid binding and biophysical activity of pulmonary surfactant-associated protein (SAP)-35 and its non-collagenous COOH-terminal domains. J Biol Chem 1986. [DOI: 10.1016/s0021-9258(18)67016-4] [Citation(s) in RCA: 69] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022] Open
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46
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Simmerman HK, Collins JH, Theibert JL, Wegener AD, Jones LR. Sequence analysis of phospholamban. Identification of phosphorylation sites and two major structural domains. J Biol Chem 1986. [DOI: 10.1016/s0021-9258(18)69309-3] [Citation(s) in RCA: 325] [Impact Index Per Article: 8.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022] Open
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47
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Johnson DF, Brown RK. A new diazirine for protein modification by flash photolysis: comparison with an azide. Photochem Photobiol 1986; 43:601-6. [PMID: 3749286 DOI: 10.1111/j.1751-1097.1986.tb05634.x] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
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48
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Hu VW, Greenhut SF, Killeen MP, Roseman MA. Transbilayer migration (flip-flop) of 12-(4-azido-2-nitrophenoxy)stearoyl glucosamine in large unilamellar phospholipid vesicles. Chem Phys Lipids 1986; 40:15-21. [PMID: 3755384 DOI: 10.1016/0009-3084(86)90058-7] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
Abstract
The ability of the glycolipid photoprobe, 12-(4-azido-2-nitrophenoxy)-stearoyl[1-14C]glucosamine (12-APS-GlcN), to undergo transbilayer flip-flop and intermembrane transfer between liposomes was examined. It was found that probe which was incorporated into membranes during the preparation of large unilamellar vesicles (LUVs) could be rapidly and completely extracted by incubation of these donor vesicles (in the liquid-crystalline state) with probe-free acceptor vesicles.
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49
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Moss DJ. Characterisation of a soluble trypsin fragment of GP130: a neuronal glycoprotein associated with the cytoskeleton. J Cell Biochem 1986; 32:97-112. [PMID: 3782313 DOI: 10.1002/jcb.240320203] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
Abstract
A neuronal glycoprotein (GP130) that is associated with the cytoskeleton [Ranscht et al: J Cell Biol 99:1803-1813, 1984] remains insoluble in 0.1 M NaOH, a property typical of integral membrane proteins. At present it is possible to solubilise and hence isolate GP130 only under denaturing conditions. However, a large fragment of apparent molecular weight 120K is released into solution by trypsin. The fragment corresponds to the extracellular region of the glycoprotein as shown by the fact that it is released from live cultures of chicken sympathetic neurons and by its retention of concanavalin A-binding activity. The soluble extracellular fragment has been purified using mild biochemical techniques, which are expected to retain its biological activity. Measurement of the sedimentation coefficient, Stokes radius, and frictional ratio in addition to metal shadowing of the fragment show that it has a molecular weight of about 120K and is asymmetric, probably rod-shaped with a long axis of more than 20 nm.
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50
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Gaffney BJ. Chemical and biochemical crosslinking of membrane components. BIOCHIMICA ET BIOPHYSICA ACTA 1985; 822:289-317. [PMID: 2865974 DOI: 10.1016/0304-4157(85)90012-7] [Citation(s) in RCA: 28] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]
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