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He H, Wei N, Xie Y, Wang L, Yao L, Xiao J. Self-Assembling Triple-Helix Recombinant Collagen Hydrogel Enriched with Tyrosine. ACS Biomater Sci Eng 2024; 10:3268-3279. [PMID: 38659167 DOI: 10.1021/acsbiomaterials.4c00230] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/26/2024]
Abstract
The self-assembly of collagen within the human body creates a complex 3D fibrous network, providing structural integrity and mechanical strength to connective tissues. Recombinant collagen plays a pivotal role in the realm of biomimetic natural collagen. However, almost all of the reported recombinant collagens lack the capability of self-assembly, severely hindering their application in tissue engineering and regenerative medicine. Herein, we have for the first time constructed a series of self-assembling tyrosine-rich triple helix recombinant collagens, mimicking the structure and functionality of natural collagen. The recombinant collagen consists of a central triple-helical domain characterized by the (Gly-Xaa-Yaa)n sequence, along with N-terminal and C-terminal domains featuring the GYY sequence. The introduction of GYY has a negligible impact on the stability of the triple-helical structure of recombinant collagen while simultaneously promoting its self-assembly into fibers. In the presence of [Ru(bpy)3]Cl2 and APS as catalysts, tyrosine residues in the recombinant collagen undergo covalent cross-linking, resulting in a hydrogel with exceptional mechanical properties. The recombinant collagen hydrogel exhibits outstanding biocompatibility and bioactivity, significantly enhancing the proliferation, adhesion, migration, and differentiation of HFF-1 cells. This innovative self-assembled triple-helix recombinant collagen demonstrates significant potential in the fields of tissue engineering and medical materials.
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Affiliation(s)
- Huixia He
- State Key Laboratory of Applied Organic Chemistry, College of Chemistry and Chemical Engineering, Lanzhou University, Lanzhou 730000, P. R. China
- Gansu Engineering Research Center of Medical Collagen, Lanzhou 730000, P. R. China
| | - Nannan Wei
- State Key Laboratory of Applied Organic Chemistry, College of Chemistry and Chemical Engineering, Lanzhou University, Lanzhou 730000, P. R. China
- Gansu Engineering Research Center of Medical Collagen, Lanzhou 730000, P. R. China
| | - Yi Xie
- State Key Laboratory of Applied Organic Chemistry, College of Chemistry and Chemical Engineering, Lanzhou University, Lanzhou 730000, P. R. China
- Gansu Engineering Research Center of Medical Collagen, Lanzhou 730000, P. R. China
| | - Lili Wang
- State Key Laboratory of Applied Organic Chemistry, College of Chemistry and Chemical Engineering, Lanzhou University, Lanzhou 730000, P. R. China
- Gansu Engineering Research Center of Medical Collagen, Lanzhou 730000, P. R. China
| | - Linyan Yao
- State Key Laboratory of Applied Organic Chemistry, College of Chemistry and Chemical Engineering, Lanzhou University, Lanzhou 730000, P. R. China
- Gansu Engineering Research Center of Medical Collagen, Lanzhou 730000, P. R. China
| | - Jianxi Xiao
- State Key Laboratory of Applied Organic Chemistry, College of Chemistry and Chemical Engineering, Lanzhou University, Lanzhou 730000, P. R. China
- Gansu Engineering Research Center of Medical Collagen, Lanzhou 730000, P. R. China
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2
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Gahlawat S, Nanda V, Shreiber DI. Designing collagens to shed light on the multi-scale structure-function mapping of matrix disorders. Matrix Biol Plus 2024; 21:100139. [PMID: 38186852 PMCID: PMC10765305 DOI: 10.1016/j.mbplus.2023.100139] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/31/2023] [Revised: 11/29/2023] [Accepted: 12/09/2023] [Indexed: 01/09/2024] Open
Abstract
Collagens are the most abundant structural proteins in the extracellular matrix of animals and play crucial roles in maintaining the structural integrity and mechanical properties of tissues and organs while mediating important biological processes. Fibrillar collagens have a unique triple helix structure with a characteristic repeating sequence of (Gly-X-Y)n. Variations within the repetitive sequence can cause misfolding of the triple helix, resulting in heritable connective tissue disorders. The most common variations are single-point missense mutations that lead to the substitution of a glycine residue with a bulkier amino acid (Gly → X). In this review, we will first discuss the importance of collagen's triple helix structure and how single Gly substitutions can impact its folding, structure, secretion, assembly into higher-order structures, and biological functions. We will review the role of "designer collagens," i.e., synthetic collagen-mimetic peptides and recombinant bacterial collagen as model systems to include Gly → X substitutions observed in collagen disorders and investigate their impact on structure and function utilizing in vitro studies. Lastly, we will explore how computational modeling of collagen peptides, especially molecular and steered molecular dynamics, has been instrumental in probing the effects of Gly substitutions on structure, receptor binding, and mechanical stability across multiple length scales.
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Affiliation(s)
- Sonal Gahlawat
- Department of Biomedical Engineering, Rutgers, The State University of New Jersey, Piscataway, NJ, USA
| | - Vikas Nanda
- Department of Biochemistry and Molecular Biology, Robert Wood Johnson Medical School, Rutgers, The State University of New Jersey, Piscataway, NJ, USA
- Center for Advanced Biotechnology and Medicine, Rutgers, The State University of New Jersey, Piscataway, NJ, USA
| | - David I. Shreiber
- Department of Biomedical Engineering, Rutgers, The State University of New Jersey, Piscataway, NJ, USA
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3
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Biswal S, Agmon N. Collagen Structured Hydration. Biomolecules 2023; 13:1744. [PMID: 38136615 PMCID: PMC10742079 DOI: 10.3390/biom13121744] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/03/2023] [Revised: 11/17/2023] [Accepted: 11/20/2023] [Indexed: 12/24/2023] Open
Abstract
Collagen is a triple-helical protein unique to the extracellular matrix, conferring rigidity and stability to tissues such as bone and tendon. For the [(PPG)10]3 collagen-mimetic peptide at room temperature, our molecular dynamics simulations show that these properties result in a remarkably ordered first hydration layer of water molecules hydrogen bonded to the backbone carbonyl (bb-CO) oxygen atoms. This originates from the following observations. The radius of gyration attests that the PPG triplets are organized along a straight line, so that all triplets (excepting the ends) are equivalent. The solvent-accessible surface area (SASA) for the bb-CO oxygens shows a repetitive regularity for every triplet. This leads to water occupancy of the bb-CO sites following a similar regularity. In the crystal-phase X-ray data, as well as in our 100 K simulations, we observe a 0-2-1 water occupancy in the P-P-G triplet. Surprisingly, a similar (0-1.7-1) regularity is maintained in the liquid phase, in spite of the sub-nsec water exchange rates, because the bb-CO sites rarely remain vacant. The manifested ordered first-shell water molecules are expected to produce a cylindrical electrostatic potential around the peptide, to be investigated in future work.
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Affiliation(s)
| | - Noam Agmon
- The Fritz Haber Research Center, Institute of Chemistry, The Hebrew University of Jerusalem, Jerusalem 9190401, Israel;
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4
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Mundra S, Shetty PJ, Shetty NJ. Tilapia fish waste: An asset for tissue engineering - A review. J Indian Soc Periodontol 2023; 27:568-577. [PMID: 38434505 PMCID: PMC10906792 DOI: 10.4103/jisp.jisp_395_22] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/29/2022] [Revised: 02/09/2023] [Accepted: 02/19/2023] [Indexed: 03/05/2024] Open
Abstract
Fisheries and aquaculture output have exploded due to an alarming increase in consumption due to the global understanding of the nutritional advantages of fish. Inadvertently, the methods produce a massive amount of fish waste, posing a serious environmental threat. Recycling this waste has now become a major point of controversy that must be resolved. It is critical to emphasize the utility of discarded marine by-products for the creation of high-value commodities such as marine collagen (MC), which can be considered a sustainable solution. Because of its biocompatibility, biodegradability, safety, minimal immunogenicity, and low production costs, MC has various benefits over terrestrial collagen. Many academics have recently become interested in the use of MC as a scaffold. This review focuses on the intriguing contribution of MC in the production of MC-based scaffolds.
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Affiliation(s)
- Shalini Mundra
- Department of Periodontology, Manipal College of Dental Sciences Mangalore, Manipal Academy of Higher Education, Manipal, Karnataka, India
| | - Preetha J. Shetty
- Department of Biomedical Sciences, BBMS Program, College of Medicine Gulf Medical University, Ajman, UAE
| | - Neetha J. Shetty
- Department of Periodontology, Manipal College of Dental Sciences Mangalore, Manipal Academy of Higher Education, Manipal, Karnataka, India
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5
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de Paz-Lugo P, Lupiáñez JA, Sicilia J, Meléndez-Hevia E. Control analysis of collagen synthesis by glycine, proline and lysine in bovine chondrocytes in vitro - Its relevance for medicine and nutrition. Biosystems 2023; 232:105004. [PMID: 37598999 DOI: 10.1016/j.biosystems.2023.105004] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/26/2023] [Revised: 08/08/2023] [Accepted: 08/17/2023] [Indexed: 08/22/2023]
Abstract
Collagen synthesis is severely diminished in osteoarthritis; thus, enhancing it may help the regeneration of cartilage. Collagen synthesis is submitted to a large procollagen cycle where the greater part of the newly synthesized protein is degraded inside the cell producing a huge waste of material and energy. We have applied the Metabolic Control Analysis approach to study the control of collagen synthesis flux by means of the response coefficients of the flux with respect to glycine, proline and lysine. Our results show that the main cause of the procollagen cycle is a protein misfolding mainly due to glycine scarcity, as well as a moderate deficiency of proline and lysine for collagen synthesis. Thus, increasing these amino acids in the diet (especially glycine) may well be a strategy for helping cartilage regeneration by enhancing collagen synthesis and reducing its huge waste in the procollagen cycle; this possibly contributes to the treatment and prevention of osteoarthritis.
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Affiliation(s)
- Patricia de Paz-Lugo
- Instituto del Metabolismo Celular, Calle Manuel de Falla nº15, La Laguna, 38208, Tenerife, Canary Islands, Spain.
| | - José Antonio Lupiáñez
- Universidad de Granada, Departamento de Bioquímica y Biología Molecular I, Facultad de Ciencias, Avda. Fuentenueva nº 1, 18071, Granada, Spain.
| | - Joaquín Sicilia
- Universidad de La Laguna, Departamento de Matemáticas, Estadística e Investigación Operativa, Avda. Astrofísico Francisco Sánchez, S/n. La Laguna, 38206, Tenerife, Canary Islands, Spain.
| | - Enrique Meléndez-Hevia
- Instituto del Metabolismo Celular, Calle Manuel de Falla nº15, La Laguna, 38208, Tenerife, Canary Islands, Spain.
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Terzi A, Gallo N, Sibillano T, Altamura D, Masi A, Lassandro R, Sannino A, Salvatore L, Bunk O, Giannini C, De Caro L. Travelling through the Natural Hierarchies of Type I Collagen with X-rays: From Tendons of Cattle, Horses, Sheep and Pigs. MATERIALS (BASEL, SWITZERLAND) 2023; 16:4753. [PMID: 37445069 DOI: 10.3390/ma16134753] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/26/2023] [Revised: 06/21/2023] [Accepted: 06/28/2023] [Indexed: 07/15/2023]
Abstract
Type I collagen physiological scaffold for tissue regeneration is considered one of the widely used biomaterials for tissue engineering and medical applications. It is hierarchically organized: five laterally staggered molecules are packed within fibrils, arranged into fascicles and bundles. The structural organization is correlated to the direction and intensity of the forces which can be loaded onto the tissue. For a tissue-specific regeneration, the required macro- and microstructure of a suitable biomaterial has been largely investigated. Conversely, the function of multiscale structural integrity has been much less explored but is crucial for scaffold design and application. In this work, collagen was extracted from different animal sources with protocols that alter its structure. Collagen of tendon shreds excised from cattle, horse, sheep and pig was structurally investigated by wide- and small-angle X-ray scattering techniques, at both molecular and supramolecular scales, and thermo-mechanically with thermal and load-bearing tests. Tendons were selected because of their resistance to chemical degradation and mechanical stresses. The multiscale structural integrity of tendons' collagen was studied in relation to the animal source, anatomic location and source for collagen extraction.
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Affiliation(s)
- Alberta Terzi
- Institute of Crystallography, National Research Council, 70125 Bari, Italy
| | - Nunzia Gallo
- Department of Engineering for Innovation, University of Salento, 73100 Lecce, Italy
| | - Teresa Sibillano
- Institute of Crystallography, National Research Council, 70125 Bari, Italy
| | - Davide Altamura
- Institute of Crystallography, National Research Council, 70125 Bari, Italy
| | - Annalia Masi
- Department of Engineering for Innovation, University of Salento, 73100 Lecce, Italy
| | - Rocco Lassandro
- Institute of Crystallography, National Research Council, 70125 Bari, Italy
| | - Alessandro Sannino
- Department of Engineering for Innovation, University of Salento, 73100 Lecce, Italy
| | - Luca Salvatore
- Department of Engineering for Innovation, University of Salento, 73100 Lecce, Italy
- Typeone Biomaterials Srl, Via Europa 167, 73021 Calimera, Italy
| | - Oliver Bunk
- Paul Scherrer Institute, 5232 Villigen PSI, Switzerland
| | - Cinzia Giannini
- Institute of Crystallography, National Research Council, 70125 Bari, Italy
| | - Liberato De Caro
- Institute of Crystallography, National Research Council, 70125 Bari, Italy
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7
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Arcoria PJ, Etzkorn FA. A fluoro-alkene mimic of Gly- trans-Pro produces a stable collagen triple helix. Org Biomol Chem 2023; 21:4039-4051. [PMID: 37114339 DOI: 10.1039/d3ob00110e] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/29/2023]
Abstract
We report the first experimental evidence for a fluoro-alkene amide isostere participating in n→π* donation, which stabilizes the collagen triple helix. Of the three amide positions in canonical collagen-like peptides, Gly-Pro, Pro-Hyp, and Hyp-Gly, triple helix stability stands to benefit from substitution of only the isomerizable 3° Gly-Pro amide bond with a trans-locked fluoro-alkene. A (Z)-fluoro-alkene isostere of Gly-trans-Pro was synthesized, and its effect on the thermostability of a collagen-like peptide triple helix was measured. The mixture of enantiomers, Boc-Gly-Ψ[(Z)CFC]-L/D-Pro-OH, was synthesized in 8 steps with 27% overall yield, and the Fmoc-Gly-Ψ[(Z)CFC]-L/D-Pro-Hyp-OBn diastereomers were separated. The Gly-Ψ[(Z)CFC]-Pro isostere installed in a collagen-like peptide forms a stable triple helix. By CD, the thermal melting (Tm) value of the fluoro-alkene peptide was +42.2 ± 0.4 °C, and the Tm value of the control peptide was +48.4 ± 0.5 °C, a difference in stability of ΔTm -6.2 °C. Deshielding of the fluorine nucleus in the 19F NMR spectra is evidence of a stabilizing n→π* electronic interaction.
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Affiliation(s)
- Paul J Arcoria
- Department of Chemistry, Virginia Tech, Blacksburg, VA, 24061, USA.
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8
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Visser D, Rogg K, Fuhrmann E, Marzi J, Schenke-Layland K, Hartmann H. Electrospinning of collagen: enzymatic and spectroscopic analyses reveal solvent-independent disruption of the triple-helical structure. J Mater Chem B 2023; 11:2207-2218. [PMID: 36786208 DOI: 10.1039/d2tb02602c] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]
Abstract
Electrospinning has become a well-established method for creating nanofibrous meshes for tissue-engineering applications. The incorporation of natural extracellular components, such as electrospun pure collagen nanofibers, has proven to be particularly challenging, as electrospun collagen nanofibers do not constitute native collagen fibers anymore. In this study, we show that this detrimental effect is not only limited to fluorinated solvents, as previously thought. Rat tail collagen was dissolved in acetic acid and ethanol and electrospun at various temperatures. Electrospun collagen mats were analyzed using circular dichroism, enzymatic digestion, SDS-PAGE, western blotting, and Raman spectroscopy and compared to heat-denaturated and electrospun collagen in HFIP. Our data suggest that even non-fluorinated electrospinning solvents, such as acid-based solvents, do not yield structurally intact fibers. Interestingly, neither epithelial cells nor fibroblasts displayed a different cellular response to electrospun collagen compared to collagen-coated polyurethane scaffolds in F-actin staining and metabolic analysis using fluorescent lifetime imaging. The disruption of the structural integrity of collagen might therefore be underestimated based on the cell-material interactions alone. These observations expose the larger than anticipated vulnerability of collagen in the electrospinning process. Based on these findings, the influence of the electrospinning process on the distinct biochemical properties of collagen should always be considered, when ECM-mimicking fibrous constructs are manufactured.
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Affiliation(s)
- Dmitri Visser
- NMI Natural and Medical Sciences Institute at the University of Tübingen, Markwiesenstrasse 55, 72770 Reutlingen, Germany.
| | - Katharina Rogg
- NMI Natural and Medical Sciences Institute at the University of Tübingen, Markwiesenstrasse 55, 72770 Reutlingen, Germany.
| | - Ellena Fuhrmann
- NMI Natural and Medical Sciences Institute at the University of Tübingen, Markwiesenstrasse 55, 72770 Reutlingen, Germany.
| | - Julia Marzi
- NMI Natural and Medical Sciences Institute at the University of Tübingen, Markwiesenstrasse 55, 72770 Reutlingen, Germany. .,Institute of Biomedical Engineering, Department for Medical Technologies & Regenerative Medicine, Eberhard Karls University Tübingen, 72076 Tübingen, Germany.,Cluster of Excellence iFIT (EXC 2180) "Image-Guided and Functionally Instructed Tumor Therapies", Eberhard Karls University Tübingen, 72076 Tübingen, Germany
| | - Katja Schenke-Layland
- NMI Natural and Medical Sciences Institute at the University of Tübingen, Markwiesenstrasse 55, 72770 Reutlingen, Germany. .,Institute of Biomedical Engineering, Department for Medical Technologies & Regenerative Medicine, Eberhard Karls University Tübingen, 72076 Tübingen, Germany.,Cluster of Excellence iFIT (EXC 2180) "Image-Guided and Functionally Instructed Tumor Therapies", Eberhard Karls University Tübingen, 72076 Tübingen, Germany
| | - Hanna Hartmann
- NMI Natural and Medical Sciences Institute at the University of Tübingen, Markwiesenstrasse 55, 72770 Reutlingen, Germany.
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9
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From Genetics to Clinical Implications: A Study of 675 Dutch Osteogenesis Imperfecta Patients. Biomolecules 2023; 13:biom13020281. [PMID: 36830650 PMCID: PMC9953243 DOI: 10.3390/biom13020281] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/14/2022] [Revised: 01/18/2023] [Accepted: 01/30/2023] [Indexed: 02/05/2023] Open
Abstract
Osteogenesis imperfecta (OI) is a heritable connective tissue disorder that causes bone fragility due to pathogenic variants in genes responsible for the synthesis of type I collagen. Efforts to classify the high clinical variability in OI led to the Sillence classification. However, this classification only partially takes into account extraskeletal manifestations and the high genetic variability. Little is known about the relation between genetic variants and phenotype as of yet. The aim of the study was to create a clinically relevant genetic stratification of a cohort of 675 Dutch OI patients based on their pathogenic variant types and to provide an overview of their respective medical care demands. The clinical records of 675 OI patients were extracted from the Amsterdam UMC Genome Database and matched with the records from Statistics Netherlands (CBS). The patients were categorized based on their harbored pathogenic variant. The information on hospital admissions, outpatient clinic visits, medication, and diagnosis-treatment combinations (DTCs) was compared between the variant groups. OI patients in the Netherlands appear to have a higher number of DTCs, outpatient clinic visits, and hospital admissions when compared to the general Dutch population. Furthermore, medication usage seems higher in the OI cohort in comparison to the general population. The patients with a COL1A1 or COL1A2 dominant negative missense non-glycine substitution appear to have a lower health care need compared to the other groups, and even lower than patients with COL1A1 or COL1A2 haploinsufficiency. It would be useful to include the variant type in addition to the Sillence classification when categorizing a patient's phenotype.
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Collagen Derived from Fish Industry Waste: Progresses and Challenges. Polymers (Basel) 2023; 15:polym15030544. [PMID: 36771844 PMCID: PMC9920587 DOI: 10.3390/polym15030544] [Citation(s) in RCA: 14] [Impact Index Per Article: 14.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/15/2022] [Revised: 01/11/2023] [Accepted: 01/13/2023] [Indexed: 01/24/2023] Open
Abstract
Fish collagen garnered significant academic and commercial focus in the last decades featuring prospective applications in a variety of health-related industries, including food, medicine, pharmaceutics, and cosmetics. Due to its distinct advantages over mammalian-based collagen, including the reduced zoonosis transmission risk, the absence of cultural-religious limitations, the cost-effectiveness of manufacturing process, and its superior bioavailability, the use of collagen derived from fish wastes (i.e., skin, scales) quickly expanded. Moreover, by-products are low cost and the need to minimize fish industry waste's environmental impact paved the way for the use of discards in the development of collagen-based products with remarkable added value. This review summarizes the recent advances in the valorization of fish industry wastes for the extraction of collagen used in several applications. Issues related to processing and characterization of collagen were presented. Moreover, an overview of the most relevant applications in food industry, nutraceutical, cosmetics, tissue engineering, and food packaging of the last three years was introduced. Lastly, the fish-collagen market and the open technological challenges to a reliable recovery and exploitation of this biopolymer were discussed.
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11
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Iqbal H, Fung KW, Gor J, Bishop AC, Makhatadze GI, Brodsky B, Perkins SJ. A solution structure analysis reveals a bent collagen triple helix in the complement activation recognition molecule mannan-binding lectin. J Biol Chem 2022; 299:102799. [PMID: 36528062 PMCID: PMC9898670 DOI: 10.1016/j.jbc.2022.102799] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/03/2022] [Revised: 12/05/2022] [Accepted: 12/09/2022] [Indexed: 12/23/2022] Open
Abstract
Collagen triple helices are critical in the function of mannan-binding lectin (MBL), an oligomeric recognition molecule in complement activation. The MBL collagen regions form complexes with the serine proteases MASP-1 and MASP-2 in order to activate complement, and mutations lead to common immunodeficiencies. To evaluate their structure-function properties, we studied the solution structures of four MBL-like collagen peptides. The thermal stability of the MBL collagen region was much reduced by the presence of a GQG interruption in the typical (X-Y-Gly)n repeat compared to controls. Experimental solution structural data were collected using analytical ultracentrifugation and small angle X-ray and neutron scattering. As controls, we included two standard Pro-Hyp-Gly collagen peptides (POG)10-13, as well as three more peptides with diverse (X-Y-Gly)n sequences that represented other collagen features. These data were quantitatively compared with atomistic linear collagen models derived from crystal structures and 12,000 conformations obtained from molecular dynamics simulations. All four MBL peptides were bent to varying degrees up to 85o in the best-fit molecular dynamics models. The best-fit benchmark peptides (POG)n were more linear but exhibited a degree of conformational flexibility. The remaining three peptides showed mostly linear solution structures. In conclusion, the collagen helix is not strictly linear, the degree of flexibility in the triple helix depends on its sequence, and the triple helix with the GQG interruption showed a pronounced bend. The bend in MBL GQG peptides resembles the bend in the collagen of complement C1q and may be key for lectin pathway activation.
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Affiliation(s)
- Hina Iqbal
- Department of Structural and Molecular Biology, University College London, London, United Kingdom
| | - Ka Wai Fung
- Department of Structural and Molecular Biology, University College London, London, United Kingdom
| | - Jayesh Gor
- Department of Structural and Molecular Biology, University College London, London, United Kingdom
| | - Anthony C. Bishop
- Center for Biotechnology and Interdisciplinary Studies, Rensselaer Polytechnic Institute, Troy, New York, USA
| | - George I. Makhatadze
- Center for Biotechnology and Interdisciplinary Studies, Rensselaer Polytechnic Institute, Troy, New York, USA
| | - Barbara Brodsky
- Department of Biomedical Engineering, Science and Technology Center, Tufts University, Medford, Massachusetts, USA
| | - Stephen J. Perkins
- Department of Structural and Molecular Biology, University College London, London, United Kingdom,For correspondence: Stephen J. Perkins
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12
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Chowdhury AS, Oxford JT. Collagen a1(XI) structure prediction by Alphafold 2. PROCEEDINGS. INTERNATIONAL CONFERENCE ON COMPUTATIONAL SCIENCE AND COMPUTATIONAL INTELLIGENCE 2022; 2022:572-577. [PMID: 37860747 PMCID: PMC10586751 DOI: 10.1109/csci58124.2022.00108] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/21/2023]
Abstract
Collagen α1(XI) is a minor fibrillar collagen involved in the critical regulation of collagen fibrils such as nucleation, assembly, and regulation of fibril diameter. The amino propeptide domain of the collagen α1(XI) is retained on the surface of the collagen fibril for an extended period of time and may play a crucial role in the interaction with extracellular matrix glycosaminoglycans and other proteins during the process of fibrillogenesis. Understanding the mechanism of action of this protein will ultimately help us understand the organization and assembly of the extracellular matrix that underlies the structural integrity of connective tissues.
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Affiliation(s)
- Abu Sayeed Chowdhury
- Biomolecular Sciences Graduate Program, Center of Biomedical Research Excellence, Boise State University, Boise, Idaho USA
| | - Julia Thom Oxford
- Department of Biological Sciences, Center of Biomedical Research Excellence, Boise State University, Boise, Idaho, USA
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13
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Meganathan I, Pachaiyappan M, Aarthy M, Radhakrishnan J, Mukherjee S, Shanmugam G, You J, Ayyadurai N. Recombinant and genetic code expanded collagen-like protein as a tailorable biomaterial. MATERIALS HORIZONS 2022; 9:2698-2721. [PMID: 36189465 DOI: 10.1039/d2mh00652a] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/16/2023]
Abstract
Collagen occurs in nature with a dedicated triple helix structure and is the most preferred biomaterial in commercialized medical products. However, concerns on purity, disease transmission, and the reproducibility of animal derived collagen restrict its applications and warrants alternate recombinant sources. The expression of recombinant collagen in different prokaryotic and eukaryotic hosts has been reported with varying degrees of success, however, it is vital to elucidate the structural and biological characteristics of natural collagen. The recombinant production of biologically functional collagen is restricted by its high molecular weight and post-translational modification (PTM), especially the hydroxylation of proline to hydroxyproline. Hydroxyproline plays a key role in the structural stability and higher order self-assembly to form fibrillar matrices. Advancements in synthetic biology and recombinant technology are being explored for improving the yield and biomimicry of recombinant collagen. It emerges as reliable, sustainable source of collagen, promises tailorable properties and thereby custom-made protein biomaterials. Remarkably, the evolutionary existence of collagen-like proteins (CLPs) has been identified in single-cell organisms. Interestingly, CLPs exhibit remarkable ability to form stable triple helical structures similar to animal collagen and have gained increasing attention. Strategies to expand the genetic code of CLPs through the incorporation of unnatural amino acids promise the synthesis of highly tunable next-generation triple helical proteins required for the fabrication of smart biomaterials. The review outlines the importance of collagen, sources and diversification, and animal and recombinant collagen-based biomaterials and highlights the limitations of the existing collagen sources. The emphasis on genetic code expanded tailorable CLPs as the most sought alternate for the production of functional collagen and its advantages as translatable biomaterials has been highlighted.
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Affiliation(s)
- Ilamaran Meganathan
- Division of Biochemistry and Biotechnology, Council of Scientific and Industrial Research (CSIR) - CLRI, Chennai, India.
| | - Mohandass Pachaiyappan
- Division of Biochemistry and Biotechnology, Council of Scientific and Industrial Research (CSIR) - CLRI, Chennai, India.
| | - Mayilvahanan Aarthy
- Division of Biochemistry and Biotechnology, Council of Scientific and Industrial Research (CSIR) - CLRI, Chennai, India.
| | - Janani Radhakrishnan
- Division of Biochemistry and Biotechnology, Council of Scientific and Industrial Research (CSIR) - CLRI, Chennai, India.
- Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, India
| | - Smriti Mukherjee
- Division of Organic and Bio-organic Chemistry, Council of Scientific and Industrial Research (CSIR) - CLRI, Chennai, India
| | - Ganesh Shanmugam
- Division of Organic and Bio-organic Chemistry, Council of Scientific and Industrial Research (CSIR) - CLRI, Chennai, India
- Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, India
| | - Jingjing You
- Save Sight Institute, Sydney Medical School, University of Sydney, Australia
| | - Niraikulam Ayyadurai
- Division of Biochemistry and Biotechnology, Council of Scientific and Industrial Research (CSIR) - CLRI, Chennai, India.
- Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, India
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14
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Bera S, Cazade PA, Bhattacharya S, Guerin S, Ghosh M, Netti F, Thompson D, Adler-Abramovich L. Molecular Engineering of Rigid Hydrogels Co-assembled from Collagenous Helical Peptides Based on a Single Triplet Motif. ACS APPLIED MATERIALS & INTERFACES 2022; 14:46827-46840. [PMID: 36206330 PMCID: PMC9585512 DOI: 10.1021/acsami.2c09982] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 06/04/2022] [Accepted: 09/23/2022] [Indexed: 06/16/2023]
Abstract
The potential of ultra-short peptides to self-assemble into well-ordered functional nanostructures makes them promising minimal components for mimicking the basic ingredient of nature and diverse biomaterials. However, selection and modular design of perfect de novo sequences are extremely tricky due to their vast possible combinatorial space. Moreover, a single amino acid substitution can drastically alter the supramolecular packing structure of short peptide assemblies. Here, we report the design of rigid hybrid hydrogels produced by sequence engineering of a new series of ultra-short collagen-mimicking tripeptides. Connecting glycine with different combinations of proline and its post-translational product 4-hydroxyproline, the single triplet motif, displays the natural collagen-helix-like structure. Improved mechanical rigidity is obtained via co-assembly with the non-collagenous hydrogelator, fluorenylmethoxycarbonyl (Fmoc) diphenylalanine. Characterizations of the supramolecular interactions that promote the self-supporting and self-healing properties of the co-assemblies are performed by physicochemical experiments and atomistic models. Our results clearly demonstrate the significance of sequence engineering to design functional peptide motifs with desired physicochemical and electromechanical properties and reveal co-assembly as a promising strategy for the utilization of small, readily accessible biomimetic building blocks to generate hybrid biomolecular assemblies with structural heterogeneity and functionality of natural materials.
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Affiliation(s)
- Santu Bera
- Department
of Oral Biology, The Goldschleger School of Dental Medicine, Sackler
Faculty of Medicine, The Center for Nanoscience and Nanotechnology,
and The Center for the Physics and Chemistry of Living Systems, Tel Aviv University, Tel Aviv 6997801, Israel
| | - Pierre-Andre Cazade
- Department
of Physics, Bernal Institute, University
of Limerick, Limerick V94T9PX, Ireland
| | - Shayon Bhattacharya
- Department
of Physics, Bernal Institute, University
of Limerick, Limerick V94T9PX, Ireland
| | - Sarah Guerin
- Department
of Physics, Bernal Institute, University
of Limerick, Limerick V94T9PX, Ireland
| | - Moumita Ghosh
- Department
of Oral Biology, The Goldschleger School of Dental Medicine, Sackler
Faculty of Medicine, The Center for Nanoscience and Nanotechnology,
and The Center for the Physics and Chemistry of Living Systems, Tel Aviv University, Tel Aviv 6997801, Israel
| | - Francesca Netti
- Department
of Oral Biology, The Goldschleger School of Dental Medicine, Sackler
Faculty of Medicine, The Center for Nanoscience and Nanotechnology,
and The Center for the Physics and Chemistry of Living Systems, Tel Aviv University, Tel Aviv 6997801, Israel
| | - Damien Thompson
- Department
of Physics, Bernal Institute, University
of Limerick, Limerick V94T9PX, Ireland
| | - Lihi Adler-Abramovich
- Department
of Oral Biology, The Goldschleger School of Dental Medicine, Sackler
Faculty of Medicine, The Center for Nanoscience and Nanotechnology,
and The Center for the Physics and Chemistry of Living Systems, Tel Aviv University, Tel Aviv 6997801, Israel
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15
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Rheological Method for Determining the Molecular Weight of Collagen Gels by Using a Machine Learning Technique. Polymers (Basel) 2022; 14:polym14173683. [PMID: 36080758 PMCID: PMC9460402 DOI: 10.3390/polym14173683] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/30/2022] [Revised: 08/30/2022] [Accepted: 08/31/2022] [Indexed: 11/23/2022] Open
Abstract
This article presents, for the first time, the results of applying the rheological technique to measure the molecular weights (Mw) and their distributions (MwD) of highly hierarchical biomolecules, such as non-hydrolyzed collagen gels. Due to the high viscosity of the studied gels, the effect of the concentrations on the rheological tests was investigated. In addition, because these materials are highly sensitive to denaturation and degradation under mechanical stress and temperatures close to 40 °C, when frequency sweeps were applied, a mathematical adjustment of the data by machine learning techniques (artificial intelligence tools) was designed and implemented. Using the proposed method, collagen fibers of Mw close to 600 kDa were identified. To validate the proposed method, lower Mw species were obtained and characterized by both the proposed rheological method and traditional measurement techniques, such as chromatography and electrophoresis. The results of the tests confirmed the validity of the proposed method. It is a simple technique for obtaining more microstructural information on these biomolecules and, in turn, facilitating the design of new structural biomaterials with greater added value.
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16
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Qiang S, Lu C, Xu F. Disrupting Effects of Osteogenesis Imperfecta Mutations Could Be Predicted by Local Hydrogen Bonding Energy. Biomolecules 2022; 12:biom12081104. [PMID: 36008998 PMCID: PMC9405839 DOI: 10.3390/biom12081104] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/14/2022] [Revised: 08/08/2022] [Accepted: 08/09/2022] [Indexed: 11/16/2022] Open
Abstract
Osteogenesis imperfecta(OI) is a disease caused by substitution in glycine residues with different amino acids in type I collagen (Gly-Xaa-Yaa)n. Collagen model peptides can capture the thermal stability loss of the helix after Gly mutations, most of which are homotrimers. However, a majority of natural collagen exists in heterotrimers. To investigate the effects of chain specific mutations in the natural state of collagen more accurately, here we introduce various lengths of side-chain amino acids into ABC-type heterotrimers. The disruptive effects of the mutations were characterized both experimentally and computationally. We found the stability decrease in the mutants was mainly caused by the disruption of backbone hydrogen bonds. Meanwhile, we found a threshold value of local hydrogen bonding energy that could predict triple helix folding or unfolding. Val caused the unfolding of triple helices, whereas Ser with a similar side-chain length did not. Structural details suggested that the side-chain hydroxyl group in Ser forms hydrogen bonds with the backbone, thereby compensating for the mutants’ decreased stability. Our study contributes to a better understanding of how OI mutations destabilize collagen triple helices and the molecular mechanisms underlying OI.
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17
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Kobayashi M, Sim JH, Sato H. Conformational analyses of collagen-like Co-Glycine/L-proline oligopeptides by quantum chemical calculation (QCC): Sequence effects on conformations and intra-molecular hydrogen bonds. Polym Bull (Berl) 2022. [DOI: 10.1007/s00289-021-03805-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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18
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WAXS and SAXS Investigation of Collagen-Rich Diet Effect on Multiscale Arrangement of Type I Collagen in Tilapia Skin Fed in Aquaponics Plant. CRYSTALS 2022. [DOI: 10.3390/cryst12050700] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
Abstract
Type I collagen is the main component of the extracellular matrix that acts as the physical and biochemical support of tissues. Thanks to its characteristics, collagen is widely employed as a biomaterial for implantable device fabrication and as antiaging food supplementation. Because of the BSE transmission in the 1990s, aquatic animals have become a more suitable extraction source than warm-blooded animals. Moreover, as recently demonstrated, a supplementing diet with fish collagen can increase the body’s collagen biosynthesis. In this context, Tilapia feeding was supplemented with hydrolyzed collagen in order to enhance the yield of extracted collagen. Tilapia skin was investigated with wide and small angle scattering techniques, analyzing the collagen structure from the submolecular to the nanoscale and correlated with Differential Scanning Calorimetry (DSC) measurements. Our studies demonstrated that the supplementation appears to have an effect at the nanoscale in which fibrils appear more randomly oriented than in fish fed with no supplemented feed. Conversely, no effect of a collagen-rich diet was observed at the submolecular scale.
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19
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Patel K, Munir D, Santos RM. Beneficial use of animal hides for abattoir and tannery waste management: a review of unconventional, innovative, and sustainable approaches. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2022; 29:1807-1823. [PMID: 34714473 DOI: 10.1007/s11356-021-17101-5] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/15/2021] [Accepted: 10/13/2021] [Indexed: 06/13/2023]
Abstract
The art of using animal hides, an apparent waste from the meat processing industry, goes back to the dawn of humanity and was highly demanded for leather manufacturing. In Ontario (Canada), small- and medium-sized abattoirs process all together approximately 300,000 sheep and 100,000 cattle per year, and for decades, the collected hides and skins have been processed into leather. However, there has been a decline in the price as well as in the demand for animal hides in the last few years, mainly due to increased customer interest in synthetic materials. This has significantly impacted small- and medium-scale abattoirs as they are left with no other option but to landfill these hides, which is not a sustainable approach. This review discusses the alternative approaches available for the management of animal hides, including those also suitable for tannery residues, which can economically and environmentally benefit society. These benefits include the production or generation of energy, compost, yarn, and medicinal goods, among other beneficial uses.
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Affiliation(s)
- Kaivalya Patel
- School of Engineering, University of Guelph, Guelph, ON, Canada
| | - Dureem Munir
- Faculty of Applied Science and Technology, Sheridan College Institute of Technology and Advanced Learning, Brampton, ON, Canada
| | - Rafael M Santos
- School of Engineering, University of Guelph, Guelph, ON, Canada.
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20
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Arcoria PJ, Ware RI, Makwana SV, Troya D, Etzkorn FA. Conformational Analysis of Fluoro-, Chloro-, and Proteo-Alkene Gly-Pro and Pro-Pro Isosteres to Mimic Collagen. J Phys Chem B 2021; 126:217-228. [PMID: 34968406 DOI: 10.1021/acs.jpcb.1c09180] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Collagen is the most abundant human protein, with the canonical sequence (Gly-Pro-Hyp)n in its triple helix region. Cis-trans isomerization of the Xaa-Pro amide has made two of these amide bonds the target of alkene replacement: the Gly-Pro and the Pro-Hyp positions. The conformations of Gly-Pro and Pro-Pro (as a Pro-Hyp model) fluoro-, chloro-, and proteo-alkene mimic models were investigated computationally to determine whether these alkenes can stabilize the polyproline type II (PPII) conformation of collagen. Second-order Møller-Plesset (MP2) calculations with various basis sets were used to perform the conformational analyses and locate stationary points. The calculation results predict that fluoro- and chloro-alkene mimics of Gly-Pro and Pro-Pro can participate in n→π* donation to stabilize PPII conformations, yet they are poor n→π* acceptors, shifting the global minima away from PPII conformations. For the proteo-alkene mimics, the lack of significant n→π* interactions and unstable PPII-like geometries explains their known destabilization of the triple helix in collagen-like peptides.
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Affiliation(s)
- Paul J Arcoria
- Department of Chemistry, Virginia Tech, Blacksburg, Virginia 24061, United States
| | - Rachel I Ware
- Department of Chemistry, Virginia Tech, Blacksburg, Virginia 24061, United States
| | - Sunny V Makwana
- Department of Chemistry, Virginia Tech, Blacksburg, Virginia 24061, United States
| | - Diego Troya
- Department of Chemistry, Virginia Tech, Blacksburg, Virginia 24061, United States
| | - Felicia A Etzkorn
- Department of Chemistry, Virginia Tech, Blacksburg, Virginia 24061, United States
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21
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Röder K. The effects of glycine to alanine mutations on the structure of GPO collagen model peptides. Phys Chem Chem Phys 2021; 24:1610-1619. [PMID: 34951417 DOI: 10.1039/d1cp04775b] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Collagen proteins are the main constituents of the extracellular matrix (ECM), and fulfil a number of wide-ranging functions, including contributions to the mechanical and biological behaviour of the ECM. Due to the heterogeneous nature of collagen in tissue samples it is difficult to fully explain the experimental observation, and hence the study of shorter model peptides is common place. Here, the computational energy landscape framework is employed to study Gly to Ala mutations in a GPO model peptide. The results show good agreement with the experimental observations for the GPO reference and a triply mutated peptide, demonstrating the validity of the approach. The modelling predicts that changes in structure are moderate and localised, with an increased dynamic in the backbone and alterations to the hydrogen bonding pattern. Two mechanisms for adjusting to the mutations are observed, with potential consequences regarding protein binding. Finally, in line with a hypothesis that proline puckering allows controlled flexibility (Chow et al., Sci. Rep., 2018, 8, 13809), alterations in the puckering preferences are observed in the strained residues surrounding the mutational sites.
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Affiliation(s)
- Konstantin Röder
- Yusuf Hamied Department of Chemistry, University of Cambridge, Lensfield Road, CB2 1EW, Cambridge, UK.
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22
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Fuji S, Tanaka K, Kishikawa S, Morita S, Doi M. Quartz crystal microbalance sensor for the detection of collagen model peptides based on the formation of triple helical structure. J Biosci Bioeng 2021; 133:168-173. [PMID: 34872873 DOI: 10.1016/j.jbiosc.2021.11.006] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/17/2021] [Revised: 11/04/2021] [Accepted: 11/16/2021] [Indexed: 02/05/2023]
Abstract
Collagen is a major structural protein, and abnormalities in collagen structure can lead to several connective tissue diseases such as osteoporosis. We report the preparation of a collagen sensor using a synthetic peptide as proof of concept for detecting the collagen like peptides. The synthetic peptide 9-fluorenylmethyloxycarbonyl (Fmoc)-(prolyl-prolyl-glycine)7-OH was coupled to thiazolidine, which gets adsorbed on metal surfaces. Fmoc-(prolyl-prolyl-glycine)7-thiazolidine was immobilized on the surface of a quartz crystal microbalance (QCM) electrode used as a sensor probe. The collagen model peptide (prolyl-prolyl-glycine)10 could be detected, and the model peptide was directly adsorbed onto the surface of the electrode and was not removed by washing with hot water. Additionally, it was proved that the sensitivity of the probe could be enhanced to nanogram order by immobilizing the blocking reagent, Fmoc-prolyl-prolyl-glycine, within the gap of sensor probes on the electrode. The detectable mass of the model peptide decreased as the probe gap became narrower because of self-association of the probes. Moreover, the sensitivity of sensor probes also decreases as the gap between the probes becomes wider. Therefore, the optimum distance between the immobilized probes was determined from the simulation based on the experimental values. The association rate of the model peptide with sensor probes could be quantitatively determined when the distance between the probes was optimum, and this result suggested that most sensor probes could form a triple helical structure with the model peptide.
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Affiliation(s)
- Sota Fuji
- Department of Applied Chemistry and Biochemistry, National Institute of Technology, Wakayama College, Noshima 77, Nada, Gobo, Wakayama 644-0023, Japan
| | - Kotaro Tanaka
- Department of Applied Chemistry and Biochemistry, National Institute of Technology, Wakayama College, Noshima 77, Nada, Gobo, Wakayama 644-0023, Japan
| | - Shiho Kishikawa
- Department of Applied Chemistry and Biochemistry, National Institute of Technology, Wakayama College, Noshima 77, Nada, Gobo, Wakayama 644-0023, Japan
| | - Seiichi Morita
- Department of Applied Chemistry and Biochemistry, National Institute of Technology, Wakayama College, Noshima 77, Nada, Gobo, Wakayama 644-0023, Japan
| | - Masamitsu Doi
- Department of Applied Chemistry and Biochemistry, National Institute of Technology, Wakayama College, Noshima 77, Nada, Gobo, Wakayama 644-0023, Japan.
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23
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Shao C, Zhang Z, Jin W, Zhang Z, Jin B, Jiang S, Pan H, Tang R, De Yoreo JJ, Liu XY. Oriented Crystallization of Hydroxyapatite in Self-Assembled Peptide Fibrils as a Bonelike Material. ACS Biomater Sci Eng 2021; 9:1808-1814. [PMID: 34855358 DOI: 10.1021/acsbiomaterials.1c00713] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Controlling oriented crystallization is key to producing bonelike composite materials with a well-organized structure. However, producing this type of composite material using synthetic biopolymers as scaffolds is challenging. Inspired by the molecular structure of collagen-I, a collagenlike peptide─(Pro-Hyp-Gly)10 (POG10)─was designed to produce self-assembled fibrils that resemble the structure of collagen-I fibrils. In addition, the oriented mineralization of HAP crystals is formed in the fibrils that reproduces a bonelike material similar to collagen-I fibril mineralization. Unlike collagen-I fibrils, POG10 fibrils do not contain gap spaces. The molecular simulation results indicate that in addition to space confinement, the molecular field generated by POG10 can also confine the orientation of HAP, enriching our understanding of physical confinement and shedding light on the design of synthetic biopolymer scaffolds for bonelike material fabrication.
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Affiliation(s)
- Changyu Shao
- Qiushi Academy for Advanced Studies, Zhejiang University, Hangzhou 310027, China.,Department of Chemistry, Zhejiang University, Hangzhou 310027, China
| | - Zhisen Zhang
- College of Physical Science and Technology, Xiamen University, Xiamen 361005, China
| | - Wenjing Jin
- Affiliated Hospital of Stomatology, School of Stomatology, Zhejiang University School of Medicine and Key Laboratory of Oral Biomedical Research of Zhejiang Province, Hangzhou 310006, China
| | - Zhan Zhang
- Department of Orthopedics, Tongde Hospital of Zhejiang Province, Hangzhou 310012, China
| | - Biao Jin
- Department of Chemistry, Zhejiang University, Hangzhou 310027, China
| | - Shuqin Jiang
- Qiushi Academy for Advanced Studies, Zhejiang University, Hangzhou 310027, China
| | - Haihua Pan
- Qiushi Academy for Advanced Studies, Zhejiang University, Hangzhou 310027, China
| | - Ruikang Tang
- Department of Chemistry, Zhejiang University, Hangzhou 310027, China
| | - James J De Yoreo
- Physical Sciences Division, Pacific Northwest National Laboratory, Richland, Washington 99354, United States
| | - Xiang Yang Liu
- College of Ocean and Earth Sciences, Xiamen University, Xiamen 361102, China
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24
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Mienaltowski MJ, Gonzales NL, Beall JM, Pechanec MY. Basic Structure, Physiology, and Biochemistry of Connective Tissues and Extracellular Matrix Collagens. ADVANCES IN EXPERIMENTAL MEDICINE AND BIOLOGY 2021; 1348:5-43. [PMID: 34807414 DOI: 10.1007/978-3-030-80614-9_2] [Citation(s) in RCA: 17] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [Key Words] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
Abstract
The physiology of connective tissues like tendons and ligaments is highly dependent upon the collagens and other such extracellular matrix molecules hierarchically organized within the tissues. By dry weight, connective tissues are mostly composed of fibrillar collagens. However, several other forms of collagens play essential roles in the regulation of fibrillar collagen organization and assembly, in the establishment of basement membrane networks that provide support for vasculature for connective tissues, and in the formation of extensive filamentous networks that allow for cell-extracellular matrix interactions as well as maintain connective tissue integrity. The structures and functions of these collagens are discussed in this chapter. Furthermore, collagen synthesis is a multi-step process that includes gene transcription, translation, post-translational modifications within the cell, triple helix formation, extracellular secretion, extracellular modifications, and then fibril assembly, fibril modifications, and fiber formation. Each step of collagen synthesis and fibril assembly is highly dependent upon the biochemical structure of the collagen molecules created and how they are modified in the cases of development and maturation. Likewise, when the biochemical structures of collagens or are compromised or these molecules are deficient in the tissues - in developmental diseases, degenerative conditions, or injuries - then the ultimate form and function of the connective tissues are impaired. In this chapter, we also review how biochemistry plays a role in each of the processes involved in collagen synthesis and assembly, and we describe differences seen by anatomical location and region within tendons. Moreover, we discuss how the structures of the molecules, fibrils, and fibers contribute to connective tissue physiology in health, and in pathology with injury and repair.
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Affiliation(s)
| | - Nicole L Gonzales
- Department of Animal Science, University of California Davis, Davis, CA, USA
| | - Jessica M Beall
- Department of Animal Science, University of California Davis, Davis, CA, USA
| | - Monica Y Pechanec
- Department of Animal Science, University of California Davis, Davis, CA, USA
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25
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Moissidou D, Derricott H, Kamel G. Mummified embalmed head skin: SR-FTIR microspectroscopic exploration. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2021; 261:120073. [PMID: 34147735 DOI: 10.1016/j.saa.2021.120073] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/01/2021] [Revised: 06/06/2021] [Accepted: 06/09/2021] [Indexed: 06/12/2023]
Abstract
This case report details the examination of the skin of an Egyptian mummified head with a possible skin disorder. The head, thought to be dated in the first half of the 18th Dynasty, New Kingdom (1570-1400 BCE) belongs to the Museum of Forensic Anthropology, University of Madrid. Initial histological examination demonstrated evidence of chronic inflammation, which was confirmed by immunohistochemistry and Transmission Electron Microscopy (TEM). However, confirmation of pathology could be confounded by both the age of the specimen and the process of preservation by mummification. In this case report, Synchrotron Radiation Fourier Transform Microspectroscopy (SR-µFTIR) was used to add novel insights into embalmed mummified tissue. More precisely, FTIR is used for the first time on the specific specimens, while no other similar studies have been performed on these samples priorly. Additionally, modern skin tissue was examined too, in order to compare the amount of degradation to the mummified one. Whilst the FTIR results confirmed the results from the initial histological study, they also showed a biochemical modification of the mummified skin that could be indicative of tissue degradation. The latter was supported by comparing it to FTIR results of the modern tissue used.
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Affiliation(s)
- Despina Moissidou
- Barts and the London School of Medicine and Dentistry, Queen Mary University of London, Malta Campus, Malta
| | - Hayley Derricott
- Barts and the London School of Medicine and Dentistry, Queen Mary University of London, Malta Campus, Malta
| | - Gihan Kamel
- SESAME (Synchrotron-light for Experimental Science and Applications in the Middle East), Allan, Jordan; Department of Physics, Faculty of Science, Helwan University, Cairo, Egypt.
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26
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Abstract
Collagen-based materials are widely used as adhesives in medicine and cosmetology. However, for several applications, their properties require modification. In this work, the influence of Melissa officinalis on the properties of collagen films was studied. Collagen was extracted from Silver Carp skin. Thin collagen films were prepared by solvent evaporation. The structure of films was researched using infrared spectroscopy. The surface properties of films were investigated using Atomic Force Microscopy (AFM). Mechanical properties were measured as well. Antioxidant activity was determined by spectrophotometric methods using DPPH free radicals, FRAP, and CUPRAC methods. Total phenolic compounds were determined by the Folin–Ciocalteau method. It was found that the addition of Melissa officinalis modified the roughness of collagen films and their mechanical properties. Moreover, the obtained material has antioxidant properties. The parameters mentioned above are very important in potential applications of collagen films containing Melissa officinalis in cosmetics.
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27
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Blundell TL. The first resolution revolution in protein structure analysis: X-ray diffraction of polypeptide conformations and globular protein folds in 1950s and 1960s. PROGRESS IN BIOPHYSICS AND MOLECULAR BIOLOGY 2021; 167:32-40. [PMID: 34520786 DOI: 10.1016/j.pbiomolbio.2021.09.002] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/23/2021] [Revised: 09/03/2021] [Accepted: 09/07/2021] [Indexed: 11/18/2022]
Abstract
Although determination of structures of biological molecules became a real possibility after the first X-ray analyses of crystals by the William Henry Bragg and his son Lawrence in 1913, the crystal structure determination of globular proteins became a possibility only in 1934 with the demonstration of X-ray diffraction from pepsin by J D Bernal and Dorothy Crowfoot, later Hodgkin, who had realised the importance of maintaining an aqueous environment for proteins in crystals. After a further 20 years of hard work by Max Perutz, John Kendrew and others the structures of haemoglobin and myoglobin emerged. Further innovation resulted in a revolution in X-ray diffraction studies in the 1960s, which focused first on polypeptides with alpha helix, beta strand and collagen polyproline helix structures, described in a review by David Davies in 1965 in the journal Progress in Biophysics, later to become Progress in Biophysics and Molecular Biology. It was followed in 1969 by a further detailed review by Tony North and David Phillips in the same journal on crystal structure a nalyses of globular proteins that successfully emerged soon after that of myoglobin. These included the structure of the first enzyme, lysozyme, followed by structures of chymotrypsin, trypsin, carboxypeptidase and many others. This first resolution revolution in X-ray analysis described in the two reviews is the subject of this retrospective analysis just over five decades later.
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Affiliation(s)
- Tom L Blundell
- Department of Biochemistry, University of Cambridge, Tennis Court Road, Cambridge, CB2 1GA, Cambridgeshire, UK.
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28
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Giannini C, De Caro L, Terzi A, Fusaro L, Altamura D, Diaz A, Lassandro R, Boccafoschi F, Bunk O. Decellularized pericardium tissues at increasing glucose, galactose and ribose concentrations and at different time points studied using scanning X-ray microscopy. IUCRJ 2021; 8:621-632. [PMID: 34258010 PMCID: PMC8256709 DOI: 10.1107/s2052252521005054] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/25/2021] [Accepted: 05/12/2021] [Indexed: 05/13/2023]
Abstract
Diseases like widespread diabetes or rare galactosemia may lead to high sugar concentrations in the human body, thereby promoting the formation of glycoconjugates. Glycation of collagen, i.e. the formation of glucose bridges, is nonenzymatic and therefore cannot be prevented in any other way than keeping the sugar level low. It relates to secondary diseases, abundantly occurring in aging populations and diabetics. However, little is known about the effects of glycation of collagen on the molecular level. We studied in vitro the effect of glycation, with d-glucose and d-galactose as well as d-ribose, on the structure of type 1 collagen by preparing decellularized matrices of bovine pericardia soaked in different sugar solutions, at increasing concentrations (0, 2.5, 5, 10, 20 and 40 mg ml-1), and incubated at 37°C for 3, 14, 30 and 90 days. The tissue samples were analyzed with small- and wide-angle X-ray scattering in scanning mode. We found that glucose and galactose produce similar changes in collagen, i.e. they mainly affect the lateral packing between macromolecules. However, ribose is much faster in glycation, provoking a larger effect on the lateral packing, but also seems to cause qualitatively different effects on the collagen structure.
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Affiliation(s)
- Cinzia Giannini
- Institute of Crystallography, National Research Council, Bari, 70126, Italy
| | - Liberato De Caro
- Institute of Crystallography, National Research Council, Bari, 70126, Italy
| | - Alberta Terzi
- Institute of Crystallography, National Research Council, Bari, 70126, Italy
| | - Luca Fusaro
- Department of Health Sciences, University of Piemonte Orientale, Novara, Italy
- Tissuegraft srl., Novara, Italy
| | - Davide Altamura
- Institute of Crystallography, National Research Council, Bari, 70126, Italy
| | - Ana Diaz
- Paul Scherrer Institut, Villigen PSI, 5232, Switzerland
| | - Rocco Lassandro
- Institute of Crystallography, National Research Council, Bari, 70126, Italy
| | - Francesca Boccafoschi
- Institute of Crystallography, National Research Council, Bari, 70126, Italy
- Department of Health Sciences, University of Piemonte Orientale, Novara, Italy
| | - Oliver Bunk
- Paul Scherrer Institut, Villigen PSI, 5232, Switzerland
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29
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Tiwari N, Wi S, Mentink-Vigier F, Sinha N. Mechanistic Insights into the Structural Stability of Collagen-Containing Biomaterials Such as Bones and Cartilage. J Phys Chem B 2021; 125:4757-4766. [PMID: 33929847 PMCID: PMC8151626 DOI: 10.1021/acs.jpcb.1c01431] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Structural stability of various collagen-containing biomaterials such as bones and cartilage is still a mystery. Despite the spectroscopic development of several decades, the detailed mechanism of collagen interaction with citrate in bones and glycosaminoglycans (GAGs) in the cartilage extracellular matrix (ECM) in its native state is unobservable. We present a significant advancement to probe the collagen interactions with citrate and GAGs in the ECM of native bones and cartilage along with specific/non-specific interactions inside the collagen assembly at the nanoscopic level through natural-abundance dynamic nuclear polarization-based solid-state nuclear magnetic resonance spectroscopy. The detected molecular-level interactions between citrate-collagen and GAG-collagen inside the native bone and cartilage matrices and other backbone and side-chain interactions in the collagen assembly are responsible for the structural stability and other biomechanical properties of these important classes of biomaterials.
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Affiliation(s)
- Nidhi Tiwari
- Centre of Biomedical Research, SGPGIMS Campus, Raebarelly Road, Lucknow – 226014, INDIA
- Department of Chemistry, Institute of Sciences, Banaras Hindu University, Varanasi – 221005, INDIA
| | - Sungsool Wi
- National High Magnetic Field Laboratory, Tallahassee, Florida 32304, USA
| | | | - Neeraj Sinha
- Centre of Biomedical Research, SGPGIMS Campus, Raebarelly Road, Lucknow – 226014, INDIA
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30
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Salvatore L, Gallo N, Natali ML, Terzi A, Sannino A, Madaghiele M. Mimicking the Hierarchical Organization of Natural Collagen: Toward the Development of Ideal Scaffolding Material for Tissue Regeneration. Front Bioeng Biotechnol 2021; 9:644595. [PMID: 33987173 PMCID: PMC8112590 DOI: 10.3389/fbioe.2021.644595] [Citation(s) in RCA: 48] [Impact Index Per Article: 16.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/21/2020] [Accepted: 03/15/2021] [Indexed: 12/11/2022] Open
Abstract
Biological materials found in living organisms, many of which are proteins, feature a complex hierarchical organization. Type I collagen, a fibrous structural protein ubiquitous in the mammalian body, provides a striking example of such a hierarchical material, with peculiar architectural features ranging from the amino acid sequence at the nanoscale (primary structure) up to the assembly of fibrils (quaternary structure) and fibers, with lengths of the order of microns. Collagen plays a dominant role in maintaining the biological and structural integrity of various tissues and organs, such as bone, skin, tendons, blood vessels, and cartilage. Thus, "artificial" collagen-based fibrous assemblies, endowed with appropriate structural properties, represent ideal substrates for the development of devices for tissue engineering applications. In recent years, with the ultimate goal of developing three-dimensional scaffolds with optimal bioactivity able to promote both regeneration and functional recovery of a damaged tissue, numerous studies focused on the capability to finely modulate the scaffold architecture at the microscale and the nanoscale in order to closely mimic the hierarchical features of the extracellular matrix and, in particular, the natural patterning of collagen. All of these studies clearly show that the accurate characterization of the collagen structure at the submolecular and supramolecular levels is pivotal to the understanding of the relationships between the nanostructural/microstructural properties of the fabricated scaffold and its macroscopic performance. Several studies also demonstrate that the selected processing, including any crosslinking and/or sterilization treatments, can strongly affect the architecture of collagen at various length scales. The aim of this review is to highlight the most recent findings on the development of collagen-based scaffolds with optimized properties for tissue engineering. The optimization of the scaffolds is particularly related to the modulation of the collagen architecture, which, in turn, impacts on the achieved bioactivity.
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Affiliation(s)
- Luca Salvatore
- Department of Engineering for Innovation, University of Salento, Lecce, Italy
| | - Nunzia Gallo
- Department of Engineering for Innovation, University of Salento, Lecce, Italy
| | - Maria Lucia Natali
- Department of Engineering for Innovation, University of Salento, Lecce, Italy
| | - Alberta Terzi
- Institute of Crystallography, National Research Council, Bari, Italy
| | - Alessandro Sannino
- Department of Engineering for Innovation, University of Salento, Lecce, Italy
| | - Marta Madaghiele
- Department of Engineering for Innovation, University of Salento, Lecce, Italy
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31
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Mechanosensitive Regulation of Fibrosis. Cells 2021; 10:cells10050994. [PMID: 33922651 PMCID: PMC8145148 DOI: 10.3390/cells10050994] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/23/2021] [Revised: 04/12/2021] [Accepted: 04/20/2021] [Indexed: 02/07/2023] Open
Abstract
Cells in the human body experience and integrate a wide variety of environmental cues. A growing interest in tissue mechanics in the past four decades has shown that the mechanical properties of tissue drive key biological processes and facilitate disease development. However, tissue stiffness is not only a potent behavioral cue, but also a product of cellular signaling activity. This review explores both roles of tissue stiffness in the context of inflammation and fibrosis, and the important molecular players driving such processes. During inflammation, proinflammatory cytokines upregulate tissue stiffness by increasing hydrostatic pressure, ECM deposition, and ECM remodeling. As the ECM stiffens, cells involved in the immune response employ intricate molecular sensors to probe and alter their mechanical environment, thereby facilitating immune cell recruitment and potentiating the fibrotic phenotype. This powerful feedforward loop raises numerous possibilities for drug development and warrants further investigation into the mechanisms specific to different fibrotic diseases.
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32
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Tiwari N, Wegner S, Hassan A, Dwivedi N, Rai R, Sinha N. Probing short and long-range interactions in native collagen inside the bone matrix by BioSolids CryoProbe. MAGNETIC RESONANCE IN CHEMISTRY : MRC 2021; 59:99-107. [PMID: 32761649 DOI: 10.1002/mrc.5084] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/12/2020] [Revised: 07/28/2020] [Accepted: 07/30/2020] [Indexed: 06/11/2023]
Abstract
Solid-state nuclear magnetic resonance is a promising technique to probe bone mineralization and interaction of collagen protein in the native state. However, many of the developments are hampered due to the low sensitivity of the technique. In this article, we report solid-state nuclear magnetic resonance (NMR) experiments using the newly developed BioSolids CryoProbe™ to access its applicability for elucidating the atomic-level structural details of collagen protein in native state inside the bone. We report here approximately a fourfold sensitivity enhancement in the natural abundance 13 C spectrum compared with the room temperature conventional solid-state NMR probe. With the advantage of sensitivity enhancement, we have been able to perform natural abundance 15 N cross-polarization magic angle spinning (CPMAS) and two-dimensional (2D) 1 H-13 C heteronuclear correlation (HETCOR) experiments of native collagen within a reasonable timeframe. Due to high sensitivity, 2D 1 H/13 C HETCOR experiments have helped in detecting several short and long-range interactions of native collagen assembly, thus significantly expanding the scope of the method to such challenging biomaterials.
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Affiliation(s)
- Nidhi Tiwari
- Centre of Biomedical Research, SGPGIMS Campus, Lucknow, 226014, India
- Department of Chemistry, Institute of Sciences, Banaras Hindu University, Varanasi, 221005, India
| | | | - Alia Hassan
- Bruker BioSpin Corporation, Fällanden, Switzerland
| | - Navneet Dwivedi
- Centre of Biomedical Research, SGPGIMS Campus, Lucknow, 226014, India
- Department of Physics, Integral University, Lucknow, 226026, India
| | - RamaNand Rai
- Department of Chemistry, Institute of Sciences, Banaras Hindu University, Varanasi, 221005, India
| | - Neeraj Sinha
- Centre of Biomedical Research, SGPGIMS Campus, Lucknow, 226014, India
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33
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Mürer FK, Chattopadhyay B, Madathiparambil AS, Tekseth KR, Di Michiel M, Liebi M, Lilledahl MB, Olstad K, Breiby DW. Quantifying the hydroxyapatite orientation near the ossification front in a piglet femoral condyle using X-ray diffraction tensor tomography. Sci Rep 2021; 11:2144. [PMID: 33495539 PMCID: PMC7835348 DOI: 10.1038/s41598-020-80615-4] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/10/2020] [Accepted: 12/21/2020] [Indexed: 01/30/2023] Open
Abstract
While a detailed knowledge of the hierarchical structure and morphology of the extracellular matrix is considered crucial for understanding the physiological and mechanical properties of bone and cartilage, the orientation of collagen fibres and carbonated hydroxyapatite (HA) crystallites remains a debated topic. Conventional microscopy techniques for orientational imaging require destructive sample sectioning, which both precludes further studies of the intact sample and potentially changes the microstructure. In this work, we use X-ray diffraction tensor tomography to image non-destructively in 3D the HA orientation in a medial femoral condyle of a piglet. By exploiting the anisotropic HA diffraction signal, 3D maps showing systematic local variations of the HA crystallite orientation in the growing subchondral bone and in the adjacent mineralized growth cartilage are obtained. Orientation maps of HA crystallites over a large field of view (~ 3 × 3 × 3 mm3) close to the ossification (bone-growth) front are compared with high-resolution X-ray propagation phase-contrast computed tomography images. The HA crystallites are found to predominantly orient with their crystallite c-axis directed towards the ossification front. Distinct patterns of HA preferred orientation are found in the vicinity of cartilage canals protruding from the subchondral bone. The demonstrated ability of retrieving 3D orientation maps of bone-cartilage structures is expected to give a better understanding of the physiological properties of bones, including their propensity for bone-cartilage diseases.
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Affiliation(s)
- Fredrik K. Mürer
- grid.5947.f0000 0001 1516 2393PoreLab, Department of Physics, Norwegian University of Science and Technology (NTNU), Høgskoleringen 5, 7491 Trondheim, Norway
| | - Basab Chattopadhyay
- grid.5947.f0000 0001 1516 2393PoreLab, Department of Physics, Norwegian University of Science and Technology (NTNU), Høgskoleringen 5, 7491 Trondheim, Norway
| | - Aldritt Scaria Madathiparambil
- grid.5947.f0000 0001 1516 2393PoreLab, Department of Physics, Norwegian University of Science and Technology (NTNU), Høgskoleringen 5, 7491 Trondheim, Norway
| | - Kim Robert Tekseth
- grid.5947.f0000 0001 1516 2393PoreLab, Department of Physics, Norwegian University of Science and Technology (NTNU), Høgskoleringen 5, 7491 Trondheim, Norway
| | - Marco Di Michiel
- grid.5398.70000 0004 0641 6373ESRF-The European Synchrotron, 71 Avenue des Martyrs, 38000 Grenoble, France
| | - Marianne Liebi
- grid.5371.00000 0001 0775 6028Chalmers University of Technology, 412 96 Gothenburg, Sweden
| | - Magnus B. Lilledahl
- grid.5947.f0000 0001 1516 2393Department of Physics, Norwegian University of Science and Technology (NTNU), Høgskoleringen 5, 7491 Trondheim, Norway
| | - Kristin Olstad
- grid.19477.3c0000 0004 0607 975XFaculty of Veterinary Medicine, Department of Companion Animal Clinical Sciences, Norwegian University of Life Sciences (NMBU), Equine Section, Sentrum, P. O. Box 369, 0102 Oslo, Norway
| | - Dag W. Breiby
- grid.5947.f0000 0001 1516 2393PoreLab, Department of Physics, Norwegian University of Science and Technology (NTNU), Høgskoleringen 5, 7491 Trondheim, Norway ,grid.463530.70000 0004 7417 509XDepartment of Microsystems, University of South-Eastern Norway (USN), Campus Vestfold, 3184 Borre, Norway
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34
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Wei W, Li D, Cai X, Liu Z, Bai Z, Xiao J. Peptide Probes with Aromatic Residues Tyr and Phe at the X Position Show High Specificity for Targeting Denatured Collagen in Tissues. ACS OMEGA 2020; 5:33075-33082. [PMID: 33403269 PMCID: PMC7774067 DOI: 10.1021/acsomega.0c04684] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/23/2020] [Accepted: 11/30/2020] [Indexed: 06/12/2023]
Abstract
The construction of potent peptide probes for selectively detecting denatured collagen is crucial for a variety of widespread diseases. However, all of the denatured collagen-targeting peptide probes found till date primarily utilized the repetitive (Gly-X-Y) n sequences with exclusively imino acids Pro and Hyp in the X and Y positions, which stabilized the triple helical conformation of the peptide probes, resulting in severe obstacles for their clinical applications. A novel series of peptide probes have been constructed by incorporating nonimino acids at the X position of the (GPO)3GXO(GPO)4 sequence, while the X-site residue is varied as Tyr, Phe, Asp, and Ala, respectively. Peptide probes FAM-GYO and FAM-GFO containing aromatic residues Tyr and Phe at the X position showed similarly high binding affinity and tissue-staining efficacy as the well-established peptide probe FAM-GPO, while peptide probes FAM-GDO and FAM-GAO with the corresponding charged residue Asp and the hydrophobic residue Ala indicated much weaker binding affinity and tissue-staining capability. Furthermore, FAM-GYO and FAM-GFO could specifically detect denatured collagen in different types of mouse connective tissues and efficiently stain various human pathological tissues. We have revealed for the first time that the incorporation of nonimino acids, particularly aromatic residues at the X and Y positions of the repetitive (Gly-X-Y) n sequences, may provide a convenient strategy to create novel robust collagen-targeting peptide probes, which have promising diagnostic applications in collagen-involved diseases.
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Affiliation(s)
- Wenyu Wei
- State Key Laboratory
of Applied Organic Chemistry, Key Laboratory of Nonferrous Metal Chemistry
and Resources Utilization of Gansu Province, College of Chemistry
and Chemical Engineering, Lanzhou University, Lanzhou 730000, P. R. China
| | - Dongfang Li
- State Key Laboratory
of Applied Organic Chemistry, Key Laboratory of Nonferrous Metal Chemistry
and Resources Utilization of Gansu Province, College of Chemistry
and Chemical Engineering, Lanzhou University, Lanzhou 730000, P. R. China
| | - Xiangdong Cai
- State Key Laboratory
of Applied Organic Chemistry, Key Laboratory of Nonferrous Metal Chemistry
and Resources Utilization of Gansu Province, College of Chemistry
and Chemical Engineering, Lanzhou University, Lanzhou 730000, P. R. China
| | - Zhao Liu
- State Key Laboratory
of Applied Organic Chemistry, Key Laboratory of Nonferrous Metal Chemistry
and Resources Utilization of Gansu Province, College of Chemistry
and Chemical Engineering, Lanzhou University, Lanzhou 730000, P. R. China
| | - Zhongtian Bai
- The Second Department of General Surgery, The First Hospital of Lanzhou University, Lanzhou 730000, Gansu Province, China
| | - Jianxi Xiao
- State Key Laboratory
of Applied Organic Chemistry, Key Laboratory of Nonferrous Metal Chemistry
and Resources Utilization of Gansu Province, College of Chemistry
and Chemical Engineering, Lanzhou University, Lanzhou 730000, P. R. China
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35
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Zhang S. Self-assembling peptides: From a discovery in a yeast protein to diverse uses and beyond. Protein Sci 2020; 29:2281-2303. [PMID: 32939884 PMCID: PMC7586918 DOI: 10.1002/pro.3951] [Citation(s) in RCA: 23] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/02/2020] [Revised: 09/11/2020] [Accepted: 09/15/2020] [Indexed: 12/11/2022]
Abstract
Well-defined nanofiber scaffold hydrogels made of self-assembling peptides have found their way into various 3D tissue culture and clinical products. I reflect initial puzzlement of the unexpected discovery, gradual understanding of how these peptides undergo self-assembly, to eventually translating designer biological scaffolds into commercial products. Peptides are ubiquitous in nature and useful in many fields. They are found as hormones, pheromones, antibacterial, and antifungal agents in innate immunity systems, toxins, as well anti-inset pesticides. However, the concept of peptides as materials was not recognized until 1990 when a self-assembling peptide as a repeating segment in a yeast protein was serendipitously discovered. The peptide materials have bona fide materials properties and are made from simple amino acids with well-ordered nanostructures under physiological conditions. Some current applications include: (a) Real 3D tissue cell cultures of diverse tissue cells and various stem cells; (b) reparative and regenerative medicine as well as tissue engineering; (c) 3D tissue printing; (d) sustained releases of small molecules, growth factors and monoclonal antibodies; and (e) accelerated wound healing of skin and diabetic ulcers as well as instant hemostasis in surgery. Self-assembling peptide nanobiotechnology will likely continue to expand in many directions in the coming years. I will also briefly introduce my current research using a simple QTY code for membrane protein design. I am greatly honored and humbled to be invited to contribute an Award Winner Recollection of the 2020 Emil Thomas Kaiser Award from the Protein Society.
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Affiliation(s)
- Shuguang Zhang
- Laboratory of Molecular ArchitectureMedia Lab, Massachusetts Institute of Technology77 Massachusetts Avenue E15‐391CambridgeMassachusetts02139‐4306USA
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36
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Miele D, Catenacci L, Rossi S, Sandri G, Sorrenti M, Terzi A, Giannini C, Riva F, Ferrari F, Caramella C, Bonferoni MC. Collagen/PCL Nanofibers Electrospun in Green Solvent by DOE Assisted Process. An Insight into Collagen Contribution. MATERIALS 2020; 13:ma13214698. [PMID: 33105584 PMCID: PMC7659940 DOI: 10.3390/ma13214698] [Citation(s) in RCA: 16] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 08/22/2020] [Revised: 09/09/2020] [Accepted: 10/16/2020] [Indexed: 01/15/2023]
Abstract
Collagen, thanks to its biocompatibility, biodegradability and weak antigenicity, is widely used in dressings and scaffolds, also as electrospun fibers. Its mechanical stability can be improved by adding polycaprolactone (PCL), a synthetic and biodegradable aliphatic polyester. While previously collagen/PCL combinations were electrospun in solvents such as hexafluoroisopropanol (HFIP) or trifluoroethanol (TFE), more recently literature describes collagen/PCL nanofibers obtained in acidic aqueous solutions. A good morphology of the fibers represents in this case still a challenge, especially for high collagen/PCL ratios. In this work, thanks to preliminary rheological and physicochemical characterization of the solutions and to a Design of Experiments (DOE) approach on process parameters, regular and dimensionally uniform fibers were obtained with collagen/PCL ratios up to 1:2 and 1:1 w/w. Collagen ratio appeared relevant for mechanical strength of dry and hydrated fibers. WAXS and FTIR analysis showed that collagen denaturation is related both to the medium and to the electrospinning process. After one week in aqueous environment, collagen release was complete and a concentration dependent stimulatory effect on fibroblast growth was observed, suggesting the fiber suitability for wound healing. The positive effect of collagen on mechanical properties and on fibroblast biocompatibility was confirmed by a direct comparison of nanofiber performance after collagen substitution with gelatin.
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Affiliation(s)
- Dalila Miele
- Department of Drug Sciences, University of Pavia, Viale Taramelli 12, 27100 Pavia, Italy; (D.M.); (L.C.); (S.R.); (G.S.); (M.S.); (F.F.); (C.C.)
| | - Laura Catenacci
- Department of Drug Sciences, University of Pavia, Viale Taramelli 12, 27100 Pavia, Italy; (D.M.); (L.C.); (S.R.); (G.S.); (M.S.); (F.F.); (C.C.)
| | - Silvia Rossi
- Department of Drug Sciences, University of Pavia, Viale Taramelli 12, 27100 Pavia, Italy; (D.M.); (L.C.); (S.R.); (G.S.); (M.S.); (F.F.); (C.C.)
| | - Giuseppina Sandri
- Department of Drug Sciences, University of Pavia, Viale Taramelli 12, 27100 Pavia, Italy; (D.M.); (L.C.); (S.R.); (G.S.); (M.S.); (F.F.); (C.C.)
| | - Milena Sorrenti
- Department of Drug Sciences, University of Pavia, Viale Taramelli 12, 27100 Pavia, Italy; (D.M.); (L.C.); (S.R.); (G.S.); (M.S.); (F.F.); (C.C.)
| | - Alberta Terzi
- Institute of Crystallography, CNR-IC, Via Amendola 122/O, 70126 Bari, Italy; (A.T.); (C.G.)
| | - Cinzia Giannini
- Institute of Crystallography, CNR-IC, Via Amendola 122/O, 70126 Bari, Italy; (A.T.); (C.G.)
| | - Federica Riva
- Department of Public Health, Experimental and Forensic Medicine, University of Pavia, via Forlanini 2, 27100 Pavia, Italy;
| | - Franca Ferrari
- Department of Drug Sciences, University of Pavia, Viale Taramelli 12, 27100 Pavia, Italy; (D.M.); (L.C.); (S.R.); (G.S.); (M.S.); (F.F.); (C.C.)
| | - Carla Caramella
- Department of Drug Sciences, University of Pavia, Viale Taramelli 12, 27100 Pavia, Italy; (D.M.); (L.C.); (S.R.); (G.S.); (M.S.); (F.F.); (C.C.)
| | - Maria Cristina Bonferoni
- Department of Drug Sciences, University of Pavia, Viale Taramelli 12, 27100 Pavia, Italy; (D.M.); (L.C.); (S.R.); (G.S.); (M.S.); (F.F.); (C.C.)
- Correspondence:
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37
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Linking structural and compositional changes in archaeological human bone collagen: an FTIR-ATR approach. Sci Rep 2020; 10:17888. [PMID: 33087827 PMCID: PMC7578014 DOI: 10.1038/s41598-020-74993-y] [Citation(s) in RCA: 17] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/16/2019] [Accepted: 08/06/2020] [Indexed: 12/19/2022] Open
Abstract
Collagen is the main structural and most abundant protein in the human body, and it is routinely extracted and analysed in scientific archaeology. Its degree of preservation is, therefore, crucial and several approaches are used to determine it. Spectroscopic techniques provide a cost-effective, non-destructive method to investigate the molecular structure, especially when combined with multivariate statistics (chemometric approach). In this study, we used FTIR-ATR spectroscopy to characterise collagen extracted from skeletons recovered from necropoleis in NW Spain spanning from the Bronze Age to eighteenth century AD. Principal components analysis was performed on a selection of bands and structural equation models (SEM) were developed to relate the collagen quality indicators to collagen structural change. Four principal components represented: (i) Cp1, transformations of the backbone protein with a residual increase in proteoglycans; (ii) Cp2, protein transformations not accompanied by changes in proteoglycans abundance; (iii) Cp3, variations in aliphatic side chains and (iv) Cp4, absorption of the OH of carbohydrates and amide. Highly explanatory SEM models were obtained for the traditional collagen quality indicators (collagen yield, C, N, C:N), but no relationship was found between quality and δ13C and δ15N ratios. The observed decrease in C and N content and increase in C:N ratios is controlled by the degradation of protein backbone components and the relative preservation of carbon-rich compounds, proteoglycans and, to a lesser extent, aliphatic moieties. Our results suggest that FTIR-ATR is an ideal technique for collagen characterization/pre-screening for palaeodiet, mobility and radiocarbon research.
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38
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Proton Conduction via Water Bridges Hydrated in the Collagen Film. J Funct Biomater 2020; 11:jfb11030061. [PMID: 32887392 PMCID: PMC7563757 DOI: 10.3390/jfb11030061] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/25/2020] [Revised: 08/12/2020] [Accepted: 09/01/2020] [Indexed: 01/16/2023] Open
Abstract
Collagen films with proton conduction are a candidate of next generation of fuel-cell electrolyte. To clarify a relation between proton conductivity and formation of water networks in the collagen film originating from a tilapia’s scale, we systematically measured the ac conductivity, infrared absorption spectrum, and weight change as a function of relative humidity (RH) at room temperature. The integrated absorbance concerning an O–H stretching mode of water molecules increases above 60% RH in accordance with the weight change. The dc conductivity varies in the vicinity of 60 and 83% RH. From those results, we have determined the dc conductivity vs. hydration number (N) per unit (Gly-X-Y). The proton conduction is negligible in the collagen molecule itself, but dominated by the hydration shell, the development of which is characterized with three regions. For 0 < N < 2, the conductivity is extremely small, because the water molecule in the primary hydration shell has a little hydrogen bonded with each other. For 2 < N < 4, a quasi-one-dimensional proton conduction occurs through intra-water bridges in the helix. For 4 < N, the water molecule fills the helix, and inter-water bridges are formed in between the adjacent helices, so that a proton-conducting network is extended three dimensional.
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39
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Ghosh M, Bera S, Schiffmann S, Shimon LJW, Adler-Abramovich L. Collagen-Inspired Helical Peptide Coassembly Forms a Rigid Hydrogel with Twisted Polyproline II Architecture. ACS NANO 2020; 14:9990-10000. [PMID: 32806033 PMCID: PMC7450664 DOI: 10.1021/acsnano.0c03085] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/10/2023]
Abstract
Collagen, the most abundant protein in mammals, possesses notable cohesion and elasticity properties and efficiently induces tissue regeneration. The Gly-Pro-Hyp canonical tripeptide repeating unit of the collagen superhelix has been well-characterized. However, to date, the shortest tripeptide repeat demonstrated to attain a helical conformation contained 3-10 peptide repeats. Here, taking a minimalistic approach, we studied a single repeating unit of collagen in its protected form, Fmoc-Gly-Pro-Hyp. The peptide formed single crystals displaying left-handed polyproline II superhelical packing, as in the native collagen single strand. The crystalline assemblies also display head-to-tail H-bond interactions and an "aromatic zipper" arrangement at the molecular interface. The coassembly of this tripeptide, with Fmoc-Phe-Phe, a well-studied dipeptide hydrogelator, produced twisted helical fibrils with a polyproline II conformation and improved hydrogel mechanical rigidity. The design of these peptides illustrates the possibility to assemble superhelical nanostructures from minimal collagen-inspired peptides with their potential use as functional motifs to introduce a polyproline II conformation into hybrid hydrogel assemblies.
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Affiliation(s)
- Moumita Ghosh
- Department
of Oral Biology, The Goldschleger School of Dental Medicine, Sackler
Faculty of Medicine, Tel-Aviv University, Tel Aviv 69978, Israel
- The
Center for Nanoscience and Nanotechnology, Tel Aviv University, Tel Aviv 69978, Israel
| | - Santu Bera
- Department
of Oral Biology, The Goldschleger School of Dental Medicine, Sackler
Faculty of Medicine, Tel-Aviv University, Tel Aviv 69978, Israel
- The
Center for Nanoscience and Nanotechnology, Tel Aviv University, Tel Aviv 69978, Israel
| | - Sarah Schiffmann
- Department
of Oral Biology, The Goldschleger School of Dental Medicine, Sackler
Faculty of Medicine, Tel-Aviv University, Tel Aviv 69978, Israel
- The
Center for Nanoscience and Nanotechnology, Tel Aviv University, Tel Aviv 69978, Israel
| | - Linda J. W. Shimon
- Department
of Chemical Research Support, Weizmann Institute
of Science, Rehovot 7610001, Israel
| | - Lihi Adler-Abramovich
- Department
of Oral Biology, The Goldschleger School of Dental Medicine, Sackler
Faculty of Medicine, Tel-Aviv University, Tel Aviv 69978, Israel
- The
Center for Nanoscience and Nanotechnology, Tel Aviv University, Tel Aviv 69978, Israel
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Kostetsky EY, Uversky VN. On the origin of matrix mechanism in protocells and key problems of molecular biology. J Biomol Struct Dyn 2020; 40:572-583. [PMID: 32820704 DOI: 10.1080/07391102.2020.1809523] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
Abstract
The theory of the emergence of the matrix mechanism in protocells on complexes of minerals (apatite, carbonate-apatite, calcite, and quartz) with the reciprocal proportions and with the participation of the gas phase radicals (NH3, CH4, and CO) is considered. The structure of apatite and carbonate-apatite predetermined the formation of a double helix of DNA with the complementary pairs of purine-pyrimidine bases, as well as RNA strands complementary to DNA, and helical protein chains combined into supramolecular structures with RNA. It is proposed that during the Archean Eon, a gradual replacement of the mineral matrix with organic matter took place. The site of the origin of the matrix mechanism is the defect-free and growing defective zone of apatite and carbonate-apatite. The size and specificity of DNA, complementary-bound RNA and protein molecules in supramolecular protein-RNA complexes increased as defects accumulated in the structure of minerals. An increase in the size of RNA transcripts was accompanied by an increase in the number of protein molecules in supramolecular protein-RNA complexes. At the first, anhydrous, stage, the formation of a transcriptional-translational apparatus in the form of a crystalline organic-mineral complex -DNA, RNA and protein, based on the "spiral into spiral" principle of gas phase elements. The appearance of water determined the launch of the transcriptional-translational apparatus and the transformation of the organo-mineral crystalline complex into a liquid-crystalline state. A detailed description of the preparation and launch of the matrix mechanism is given. The following problems are discussed: the origin of ribosomal proteins and the role of super-specific aminoacyl-tRNA synthetase as a true carrier of genetic information; properties of the genetic code and synthesis of protocells without violating the second law of thermodynamics; the origin of biological asymmetry; the appearance of nanobacteria and dark genetic matter of eukaryotic systems.Communicated by Ramaswamy H. Sarma.
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Affiliation(s)
- Eduard Y Kostetsky
- Department of Biochemistry, Microbiology and Biotechnology, School of Natural Sciences, Far Eastern Federal University, Vladivostok, Russian Federation
| | - Vladimir N Uversky
- Department of Molecular Medicine and USF Health Byrd Alzheimer's Research Institute, Morsani College of Medicine, University of South Florida, Tampa, FL, USA.,Institute for Biological Instrumentation of the Russian Academy of Sciences, Federal Research Center "Pushchino Scientific Center for Biological Research of the Russian Academy of Sciences", Pushchino, Russia
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41
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Kaur S, Jindal R. Exploring the heavy metal ion sequestration ability of gum copal‐collagen hybrid based interpenetrating polymer network: Kinetics, isotherms, and biodegradation studies. ACTA ACUST UNITED AC 2020. [DOI: 10.1002/pls2.10007] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Affiliation(s)
- Savneet Kaur
- Department of Chemistry Dr. B.R. Ambedkar National Institute of Technology Jalandhar Punjab India
| | - Rajeev Jindal
- Department of Chemistry Dr. B.R. Ambedkar National Institute of Technology Jalandhar Punjab India
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42
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Suzuki H, Mahapatra D, Board AJ, Steel PJ, Dyer JM, Gerrard JA, Dobson RCJ, Valéry C. Sub-Ångstrom structure of collagen model peptide (GPO) 10 shows a hydrated triple helix with pitch variation and two proline ring conformations. Food Chem 2020; 319:126598. [PMID: 32182540 DOI: 10.1016/j.foodchem.2020.126598] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/10/2019] [Revised: 02/18/2020] [Accepted: 03/10/2020] [Indexed: 11/17/2022]
Abstract
Collagens are large structural proteins that are prevalent in mammalian connective tissue. Peptides designed to include a glycine-proline-hydroxyproline (GPO) amino acid triad are biomimetic analogs of the collagen triple helix, a fold that is a hallmark of collagen-like sequences. To inform the rational engineering of collagen-like peptides and proteins for food systems, we report the crystal structure of the (GPO)10 peptide at 0.89-Å resolution, solved using direct methods. We determined that a single chain in the asymmetric unit forms a pseudo-hexagonal network of triple helices that have a pitch variation consistent with the model 7/2 helix (3.5 residues per turn). The proline rings occupied one of two states, while the helix was found to have a well-defined hydration shell involved in the stabilization of the inter-helix crystal network. This structure offers a new high-resolution basis for understanding the hierarchical assembly of native collagens, which will aid the food industry in engineering new sustainable food systems.
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Affiliation(s)
- Hironori Suzuki
- Biomolecular Interaction Centre, University of Canterbury, Christchurch, New Zealand
| | - Deepti Mahapatra
- Biomolecular Interaction Centre, University of Canterbury, Christchurch, New Zealand; AgResearch Ltd, Lincoln, New Zealand
| | - Amanda J Board
- Biomolecular Interaction Centre, University of Canterbury, Christchurch, New Zealand; Riddet Institute, Massey University, Palmerston North, New Zealand
| | - Peter J Steel
- Chemistry Department, University of Canterbury, Christchurch, New Zealand
| | - Jolon M Dyer
- Biomolecular Interaction Centre, University of Canterbury, Christchurch, New Zealand; AgResearch Ltd, Lincoln, New Zealand; Riddet Institute, Massey University, Palmerston North, New Zealand
| | - Juliet A Gerrard
- Biomolecular Interaction Centre, University of Canterbury, Christchurch, New Zealand; School of Biological Sciences and School of Chemical Sciences, University of Auckland, Auckland, New Zealand; Riddet Institute, Massey University, Palmerston North, New Zealand; Callaghan Innovation Research Limited, Lower Hutt, New Zealand
| | - Renwick C J Dobson
- Biomolecular Interaction Centre, University of Canterbury, Christchurch, New Zealand; Riddet Institute, Massey University, Palmerston North, New Zealand; Department of Biochemistry and Molecular Biology, Bio21 Molecular Science and Biotechnology Institute, University of Melbourne, Victoria, Australia.
| | - Céline Valéry
- Biomolecular Interaction Centre, University of Canterbury, Christchurch, New Zealand; School of Medical Sciences, RMIT University, Bundoora, Victoria, Australia.
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43
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Melton SD, Brackhahn EAE, Orlin SJ, Jin P, Chenoweth DM. Rules for the design of aza-glycine stabilized triple-helical collagen peptides. Chem Sci 2020; 11:10638-10646. [PMID: 34094319 PMCID: PMC8162259 DOI: 10.1039/d0sc03003a] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
The stability of the triple-helical structure of collagen is modulated by a delicate balance of effects including polypeptide backbone geometry, a buried hydrogen bond network, dispersive interfacial interactions, and subtle stereoelectronic effects. Although the different amino acid propensities for the Xaa and Yaa positions of collagen's repeating (Glycine-Xaa-Yaa) primary structure have been described, our understanding of the impact of incorporating aza-glycine (azGly) residues adjacent to varied Xaa and Yaa position residues has been limited to specific sequences. Here, we detail the impact of variation in the Xaa position adjacent to an azGly residue and compare these results to our study on the impact of the Yaa position. For the first time, we present a set of design rules for azGly-stabilized triple-helical collagen peptides, accounting for all canonical amino acids in the Xaa and Yaa positions adjacent to an azGly residue, and extend these rules using multiple azGly residues. To gain atomic level insight into these new rules we present two high-resolution crystal structures of collagen triple helices, with the first peptoid-containing collagen peptide structure. In conjunction with biophysical and computational data, we highlight the critical importance of preserving the triple helix geometry and protecting the hydrogen bonding network proximal to the azGly residue from solvent. Our results provide a set of design guidelines for azGly-stabilized triple-helical collagen peptides and fundamental insight into collagen structure and stability.
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Affiliation(s)
- Samuel D Melton
- Department of Chemistry, University of Pennsylvania 231 South 34th Street Philadelphia Pennsylvania 19104 USA
| | - Emily A E Brackhahn
- Department of Chemistry, University of Pennsylvania 231 South 34th Street Philadelphia Pennsylvania 19104 USA
| | - Samuel J Orlin
- Department of Chemistry, University of Pennsylvania 231 South 34th Street Philadelphia Pennsylvania 19104 USA
| | - Pengfei Jin
- Department of Chemistry, University of Pennsylvania 231 South 34th Street Philadelphia Pennsylvania 19104 USA
| | - David M Chenoweth
- Department of Chemistry, University of Pennsylvania 231 South 34th Street Philadelphia Pennsylvania 19104 USA
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Thomas J, Worch H, Kruppke B, Gemming T. Contribution to understand the biomineralization of bones. J Bone Miner Metab 2020; 38:456-468. [PMID: 32008099 DOI: 10.1007/s00774-020-01083-4] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 10/01/2019] [Accepted: 01/03/2020] [Indexed: 02/06/2023]
Abstract
INTRODUCTION The goal is to propose a material scientific hypothesis for the atomic arrangement of calcium phosphates during the mineralization of bones. MATERIALS AND METHODS It was reached by the analysis of bones of healthy and osteoporotic rats using analytical transmission electron microscopic methods. RESULTS Electron diffraction patterns show hydroxyapatite (HAP) as dominant phase within the mineralized areas. In the electron energy loss spectrum, a double peak of the phosphorous L-edge seems to be a characteristic feature of the phosphorous binding in biological HAP. The hypothesis bases on periodic features on the collagen surface which agree with distances between oxygen atoms in the (200) plane of octacalcium phosphate (OCP). Bridge pillars for the HAP network consist of OCP coupled with a half unit cell on collagen by oxygen-hydrogen bridges. Possibly, the metastable OCP bridges are only a transient step, while the mineralization is starting. OCP and HAP couple by similar distances of calcium atoms in an interface close to the (100) planes of the OCP and the HAP network. To reach the perfect overlap of the equidistant Ca atoms, the HAP network has to be rotated by 22.5° around the a-axis, 11.5° around the c-axis of HAP, and 10.1° around an axis perpendicular to a and c. CONCLUSIONS A supercell based on this idea is able to explain the dominance of HAP in the electron diffraction patterns, the arrangement of the (002) lattice planes perpendicular to the collagen fiber axis, and sections of high-resolution TEM images.
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Affiliation(s)
- Jürgen Thomas
- Leibniz Institute for Solid State and Materials Research Dresden, Helmholtzstraße 20, 01069, Dresden, Germany.
| | - Hartmut Worch
- Max Bergmann Center of Biomaterials and Institute of Materials Science, Technische Universität Dresden, Budapester Str. 27, 01069, Dresden, Germany
| | - Benjamin Kruppke
- Max Bergmann Center of Biomaterials and Institute of Materials Science, Technische Universität Dresden, Budapester Str. 27, 01069, Dresden, Germany
| | - Thomas Gemming
- Leibniz Institute for Solid State and Materials Research Dresden, Helmholtzstraße 20, 01069, Dresden, Germany
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Abstract
Natural fibrillar-like macromolecules find applications in several fields, thanks to their peculiar features, and are considered perfect building blocks for natural and artificial functional materials. Indeed, fibrous proteins (such as collagen or fibroin) are commonly used in scaffold fabrication for biomedical applications, due to the high biophysical similarity with the extracellular matrix (ECM) which stimulates tissue regeneration. In the textile industry, cellulose-based fabrics are widely used in place of cotton and viscose, which both have sustainability issues related to their fabrication. With this in mind, the structural characterization of the materials at molecular scale plays a fundamental role in gaining insight into the fiber assembly process. In this work, we report on three fibers of research interest (i.e., type I collagen, silk fibroin extracted from Bombyx mori, and cellulose) to show the power of wide-angle X-ray scattering to characterize both intra- and intermolecular parameters of fibrous polymers. The latest possibilities offered in the X-ray scattering field allow one to study fibers at solid state or dispersed in solutions as well as to perform quantitative scanning X-ray microscopy of tissues entirely or partially made by fibers.
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Terzi A, Gallo N, Bettini S, Sibillano T, Altamura D, Madaghiele M, De Caro L, Valli L, Salvatore L, Sannino A, Giannini C. Sub‐ and Supramolecular X‐Ray Characterization of Engineered Tissues from Equine Tendon, Bovine Dermis, and Fish Skin Type‐I Collagen. Macromol Biosci 2020; 20:e2000017. [DOI: 10.1002/mabi.202000017] [Citation(s) in RCA: 17] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/13/2020] [Accepted: 01/23/2020] [Indexed: 12/20/2022]
Affiliation(s)
- Alberta Terzi
- Institute of Crystallography (IC)National Research Council Bari 70126 Italy
| | - Nunzia Gallo
- Department of Engineering for InnovationUniversity of Salento Lecce 73100 Italy
| | - Simona Bettini
- Department of Engineering for InnovationUniversity of Salento Lecce 73100 Italy
| | - Teresa Sibillano
- Institute of Crystallography (IC)National Research Council Bari 70126 Italy
| | - Davide Altamura
- Institute of Crystallography (IC)National Research Council Bari 70126 Italy
| | - Marta Madaghiele
- Department of Engineering for InnovationUniversity of Salento Lecce 73100 Italy
| | - Liberato De Caro
- Institute of Crystallography (IC)National Research Council Bari 70126 Italy
| | - Ludovico Valli
- Department of Biological and Environmental Sciences and TechnologiesUniversity of Salento Lecce 73100 Italy
| | - Luca Salvatore
- Department of Engineering for InnovationUniversity of Salento Lecce 73100 Italy
| | - Alessandro Sannino
- Department of Engineering for InnovationUniversity of Salento Lecce 73100 Italy
| | - Cinzia Giannini
- Institute of Crystallography (IC)National Research Council Bari 70126 Italy
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Rouède D, Schaub E, Bellanger JJ, Ezan F, Tiaho F. Wavy nature of collagen fibrils deduced from the dispersion of their second-order nonlinear optical anisotropy parameters ρ. OPTICS EXPRESS 2020; 28:4845-4858. [PMID: 32121716 DOI: 10.1364/oe.380089] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/11/2019] [Accepted: 01/02/2020] [Indexed: 06/10/2023]
Abstract
From P-SHG experiments, second-order nonlinear optical anisotropy parameters ρ = χZZZ/χZXX of collagen tissues are calculated assuming the same model of supercoiled collagen fibril characterized by a variable angle θ. Dispersion of experimental ρ values is converted into distribution of θ values based on the wavy nature of collagen fibrils deduced from EM studies. For tendon, the results show that the dispersion of experimental ρ values is mainly due to Poisson photonic shot noise assuming a slight fibrillar undulation with θ = 2.2° ± 1.8°. However for skin and vessels, the dispersion of experimental ρ values is mainly due to a stronger fibrillar undulation with θ = 16.2° ± 1.3°. The results highlight that this undulation is reduced during the development of liver fibrosis therefore, contributing to the rigidity of the tissue.
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48
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Mansurnezhad R, Ghasemi-Mobarakeh L, Coclite AM, Beigi MH, Gharibi H, Werzer O, Khodadadi-Khorzoughi M, Nasr-Esfahani MH. Fabrication, characterization and cytocompatibility assessment of gelatin nanofibers coated with a polymer thin film by initiated chemical vapor deposition. MATERIALS SCIENCE & ENGINEERING. C, MATERIALS FOR BIOLOGICAL APPLICATIONS 2020; 110:110623. [PMID: 32204065 DOI: 10.1016/j.msec.2019.110623] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/09/2019] [Revised: 11/22/2019] [Accepted: 12/31/2019] [Indexed: 12/17/2022]
Abstract
The presence of various functional groups in the structure of gelatin nanofibers (GNFs) has made it a suitable candidate for biomedical applications, yet its fast dissolution in aqueous media has been a real challenge for years. In the present work, we propose an efficient procedure to improve the durability of the GNFs. The electrospun GNFs were coated with poly(ethylene glycol dimethacrylate) (pEGDMA) using initiated chemical vapor deposition (iCVD) as a completely dry polymerization method. Morphological and chemical analysis revealed that an ultrathin layer formed around nanofibers (iCVD-GNFs) which has covalently bonded to gelatin chains. Against the instant dissolution of GNFs, the in vitro biodegradability test showed the iCVD-GNFs, to a large extent, preserve their morphology after 14 days of immersion and did not lose its integrity even after 31 days. In vitro cell culture studies, also, revealed cytocompatibility of the iCVD-GNFs for human fibroblast cells (hFC), as well as higher cell proliferation on the iCVD-GNFs compared to control made from tissue culture plate (TCP). Furthermore, contact angle measurements indicated that the hydrophilic GNFs became hydrophobic after the iCVD, yet FE-SEM images of cell-seeded iCVD-GNFs showed satisfactory cell adhesion. Taken together, the proposed method paves a promising way for the production of water-resistant GNFs utilized in biomedical applications; for instance, tissue engineering scaffolds and wound dressings.
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Affiliation(s)
- Reza Mansurnezhad
- Department of Textile Engineering, Isfahan University of Technology, Isfahan 84156-83111, Iran
| | - Laleh Ghasemi-Mobarakeh
- Department of Textile Engineering, Isfahan University of Technology, Isfahan 84156-83111, Iran.
| | - Anna Maria Coclite
- Institute for Solid State Physics, NAWI Graz, Graz University of Technology, 8010, Graz, Austria; BioTechMed, Graz, Austria.
| | - Mohammad-Hossein Beigi
- Silicon Hall: Micro/Nano Manufacturing Facility, Faculty of Engineering and Applied Science, Ontario Tech University, Ontario, Canada; Department of Cellular Biotechnology, Cell Science Research Center, Royan Institute for Biotechnology, ACECR, Isfahan, Iran
| | - Hamidreza Gharibi
- Innovation management and Technology Commercialization Center, Isfahan University of Technology, Isfahan 84156-83111, Iran
| | - Oliver Werzer
- Institute of Pharmaceutical Science, Department of Pharmaceutical Technology, University of Graz, 8010, Graz, Austria
| | | | - Mohammad-Hossein Nasr-Esfahani
- Department of Cellular Biotechnology, Cell Science Research Center, Royan Institute for Biotechnology, ACECR, Isfahan, Iran
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49
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Falk MJ, Duwel A, Colwell LJ, Brenner MP. Collagen-Inspired Self-Assembly of Twisted Filaments. PHYSICAL REVIEW LETTERS 2019; 123:238102. [PMID: 31868483 DOI: 10.1103/physrevlett.123.238102] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/13/2018] [Revised: 09/27/2019] [Indexed: 06/10/2023]
Abstract
Collagen consists of three peptides twisted together through a periodic array of hydrogen bonds. Here we use this as inspiration to find design rules for programmed specific interactions for self-assembling synthetic collagenlike triple helices, starting from disordered configurations. The assembly generically nucleates defects in the triple helix, the characteristics of which can be manipulated by spatially varying the enthalpy of helix formation. Defect formation slows assembly, evoking kinetic pathologies that have been observed to mutations in the primary collagen amino acid sequence. The controlled formation and interaction between defects gives a route for hierarchical self-assembly of bundles of twisted filaments.
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Affiliation(s)
- Martin J Falk
- Department of Physics, Massachusetts Institute of Technology, Cambridge, Massachusetts 02138, USA
| | - Amy Duwel
- Charles Stark Draper Laboratory, Cambridge, Massachusetts 02138, USA
| | - Lucy J Colwell
- Department of Chemistry, University of Cambridge, Lensfield Road, Cambridge CB2 1EW, United Kingdom
| | - Michael P Brenner
- School of Engineering and Applied Sciences, Harvard University, Cambridge, Massachusetts 02138, USA
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50
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Shu F, Dai C, Wang H, Xu C, Wie B, Zhang J, Xu Y, He L, Li S. Formation, Stability and Self‐Assembly Behaviour of the Collagen‐Like Triple Helix Confirmation: The Role of Ser, Ala and Arg/Glu. ChemistrySelect 2019. [DOI: 10.1002/slct.201903500] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Affiliation(s)
- Feiyi Shu
- School of Chemistry and Environmental EngineeringWuhan Polytechnic University, Changqing Garden, Wuhan, Hubei China
| | - Chun Dai
- School of Food Science and EngineeringWuhan Polytechnic University, Changqing Garden, Wuhan, Hubei China
| | - Haibo Wang
- School of Chemistry and Environmental EngineeringWuhan Polytechnic University, Changqing Garden, Wuhan, Hubei China
| | - Chengzhi Xu
- School of Chemistry and Environmental EngineeringWuhan Polytechnic University, Changqing Garden, Wuhan, Hubei China
| | - Benmei Wie
- School of Chemistry and Environmental EngineeringWuhan Polytechnic University, Changqing Garden, Wuhan, Hubei China
| | - Juntao Zhang
- School of Chemistry and Environmental EngineeringWuhan Polytechnic University, Changqing Garden, Wuhan, Hubei China
| | - Yuling Xu
- School of Chemistry and Environmental EngineeringWuhan Polytechnic University, Changqing Garden, Wuhan, Hubei China
| | - Lang He
- School of Chemistry and Environmental EngineeringWuhan Polytechnic University, Changqing Garden, Wuhan, Hubei China
| | - Sheng Li
- School of Chemistry and Environmental EngineeringWuhan Polytechnic University, Changqing Garden, Wuhan, Hubei China
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