Effect of Microbial Biomass and Humic Acids on Abiotic and Biotic Magnetite Formation

Aluminum substitution stabilizes organic matter in ferrihydrite transforming into hematite: A molecular analysis

The association of soil organic matter (SOM) with iron (Fe) oxyhydroxides, particularly ferrihydrite, plays a pivotal role in the biogeochemical cycling of carbon (C) in both terrestrial and aquatic environment. The aging of ferrihydrite to more crystalline phases can impact the stability of associated organic C, a process potentially influenced by aluminum (Al) substitution due to its abundance. However, the molecular mechanisms governing the temporal and spatial distribution of SOM during the aging process of Al-substituted Fe oxyhydroxides remain unclear. This study aims to bridge this knowledge gap through a comprehensive approach, utilizing batch experiments, solid characterization techniques, and atomic force microscopy (AFM) based peak-force quantitative nanomechanical mapping (PF-QNM). Batch experiments revealed that humic acid (HA) was released into the aqueous phase during aging, with Al inhibiting this release. Various solid characterization methods collectively suggested that Al hindered the crystalline transformation of ferrihydrite and significantly preserved HA on the surface of newly formed hematite, rather than it being occluded within the interior of the new minerals. Results from 3-Dimensional fluorescence spectroscopy (3D-EEM) and Fourier-transform infrared spectroscopy (FTIR) indicated that the structure of HA remained constant, with the carboxyl-rich and hydroxyl-rich portions of HA fixed at the mineral interface during the aging period. Furthermore, we developed AFM-based PF-QNM to both quantify and visualize the interactions between Fe oxyhydroxides and HA, demonstrating variations in HA affinity among different Fe oxyhydroxides and highlighting the influence of the Al substitution rate.

Extracellular polymeric substances altered ferrihydrite (trans)formation and induced arsenic mobilization

The behavior of As is closely related to trans(formation) of ferrihydrite, which often coprecipitates with extracellular polymeric substances (EPS), forming EPS-mineral aggregates in natural environments. While the effect of EPS on ferrihydrite properity, mineralogy reductive transformation, and associated As fate in sulfate-reducing bacteria (SRB)-rich environments remains unclear. In this research, ferrihydrite-EPS aggregates were synthesized and batch experiments combined with spectroscopic, microscopic, and geochemical analyses were conducted to address these knowledge gaps. Results indicated that EPS blocked micropores in ferrihydrite, and altered mineral surface area and susceptibility. Although EPS enhanced Fe(III) reduction, it retarded ferrihydrite transformation to magnetite by inhibiting Fe atom exchange in systems with low SO42-. As a result, 16% of the ferrihydrite was converted into magnetite in the Fh-0.3 treatment, and no ferrihydrite transformation occurred in the Fh-EPS-0.3 treatment. In systems with high SO42-, however, EPS promoted mackinawite formation and increased As mobilization into the solution. Additionally, the coprecipitated EPS facilitated As(V) reduction to more mobilized As(III) and decreased conversion of As into the residual phase, enhancing the potential risk of As contamination. These findings advance our understanding on biogeochemistry of elements Fe, S, and As and are helpful for accurate prediction of As behavior.

Morphological, Microstructural, and In Situ Chemical Characteristics of Siderite Produced by Iron-Reducing Bacteria

Dissimilatory iron-reducing bacteria (DIRB) oxidize organic matter or hydrogen and reduce ferric iron to form Fe(II)-bearing minerals, such as magnetite and siderite. However, compared with magnetite, which was extensively studied, the mineralization process and mechanisms of siderite remain unclear. Here, with the combination of advanced electron microscopy and synchrotron-based scanning transmission X-ray microscopy (STXM) approaches, we studied in detail the morphological, structural, and chemical features of biogenic siderite via a growth experiment with Shewanella oneidensis MR-4. Results showed that along with the growth of cells, Fe(II) ions were increasingly released into solution and reacted with CO32- to form micrometer-sized siderite minerals with spindle, rod, peanut, dumbbell, and sphere shapes. They are composed of many single-crystal siderite plates that are fanned out from the center of the particles. Additionally, STXM revealed Fh and organic molecules inside siderite. This suggests that the siderite crystals might assemble around a Fh-organic molecule core and then continue to grow radially. This study illustrates the biomineralization and assembly of siderite by a successive multistep growth process induced by DIRB, also provides evidences that the distinctive shapes and the presence of organic molecules inside might be morphological and chemical features for biogenic siderite.

Insight into bacterial role attribution in dissolved organic matter humification during rice straw composting with microbial inoculation

This study aims to investigate the effect of microbial role distribution in microbial carbon pumps on dissolved organic matter (DOM) humification during rice straw composting with microbial inoculation. Three composting groups were designed, named CK (control), B4 (with Bacillus subtilis, OR058594) and Z1 (with Aspergillus fumigatus, AF202956.1). As a result of inoculation, the composition of microbial communities was changed, so that the microorganisms that promoted DOM humification were concentrated in the responders in the microbial carbon pump. DOM was divided into three components in three composting treatments: C1, C2 and C3. After inoculation with Bacillus subtilis, the C2 component was significantly affected, while after inoculation with Aspergillus fumigatus, the C3 component was significantly affected. The results of physicochemical factors affecting the transformation of DOM fluorescence components indicated that C1, C2 and C3 were related to the abundance of the cellulose-degrading enzyme-encoding gene GH7 in CK and B4 composting. However, the C2 was susceptible to organic matter in Z1 composting. This study explored the distribution of microbial communities from a new perspective, which provided new information for analyzing DOM humification and treating agricultural straws to achieve clean conditions for environmental friendliness.

The decomposition of algae has a greater impact on heavy metal transformation in freshwater lake sediments than that of macrophytes

Heavy metal (HM) pollution is a major concern in freshwater ecosystem management. The different types of endogenous organic matter and the way their decomposition affects HM transformation in freshwater lakes is not well understood. An ex situ mesocosm study was conducted to compare HM transformation in sediments during anaerobic decomposition of cyanobacterial bloom biomass (CBB) and submerged cyanobacterial vegetation in Lake Taihu, known as Potamogeton malaianus (PM). Microbial community structures were examined through Illumina sequencing of 16S rDNA. Results indicate that Zn had a remarkably higher amount of potential mobile fraction than other heavy metals (Cr, Pb, Cu, Ni, and Cd) detected in sediments, especially in sediments collected from CBB-dominated areas (approximately 150 mg kg-1). CBB decomposition has caused a significant increase in exchangeable Zn content in sediments and a decrease in reducible Zn that was three times greater than PM decomposition. Additionally, oxidizable Zn content declined during CBB decomposition but increased during PM decomposition. Furthermore, the relative abundance of the main fermentative bacteria and some sulfate-reducing bacteria genera (e.g., Desulfomicrobium) were significantly associated with the HM content of exchangeable and reducible fractions during CBB decomposition. Overall, the findings indicate that Zn is more susceptible to endogenous organic matter decomposition than other metals in freshwater lakes, and the impacts of CBB decomposition on the transformation of heavy metals in sediment are greater than that of submerged macrophyte decomposition.

Transient fertilization of a post-Sturtian Snowball ocean margin with dissolved phosphate by clay minerals

Marine sedimentary rocks deposited across the Neoproterozoic Cryogenian Snowball interval, ~720-635 million years ago, suggest that post-Snowball fertilization of shallow continental margin seawater with phosphorus accelerated marine primary productivity, ocean-atmosphere oxygenation, and ultimately the rise of animals. However, the mechanisms that sourced and delivered bioavailable phosphate from land to the ocean are not fully understood. Here we demonstrate a causal relationship between clay mineral production by the melting Sturtian Snowball ice sheets and a short-lived increase in seawater phosphate bioavailability by at least 20-fold and oxygenation of an immediate post-Sturtian Snowball ocean margin. Bulk primary sediment inputs and inferred dissolved seawater phosphate dynamics point to a relatively low marine phosphate inventory that limited marine primary productivity and seawater oxygenation before the Sturtian glaciation, and again in the later stages of the succeeding interglacial greenhouse interval.

Mineral transformation of poorly crystalline ferrihydrite to hematite and goethite facilitated by an acclimated microbial consortium in electrodes of soil microbial fuel cells

In this study, we investigated the biogenic mineral transformation of poorly crystalline ferrihydrite in the presence of an acclimated microbial consortium after confirming successful soil microbial fuel cell optimization. The acclimated microbial consortia in the electrodes distinctly transformed amorphous ferrihydrite into crystallized hematite (cathode) and goethite (anode) under ambient culture conditions (30 °C). Serial analysis, including transmission/scanning electron microscopy and X-ray/selected area electron diffraction, confirmed that the biogenically synthesized nanostructures were iron nanospheres (~100 nm) for hematite and nanostars (~300 nm) for goethite. Fe(II) ion production with acetate oxidation via anaerobic respiration was much higher in the anode electrode sample (3.2- to 17.8-fold) than for the cathode electrode or soil samples. Regarding the culturable bacteria from the acclimated microbial consortium, the microbial isolates were more abundant and diverse at the anode. These results provide new insights into the biogeochemistry of iron minerals and microbial fuel cells in a soil environment, along with physiological characters of microbes (i.e., iron-reducing bacteria), for in situ applications in sustainable energy research.

Oxidative compensation mechanism of Fe-S synergetic inhibition of Cd activity in paddy field during flooding and drainage

It is known that the transformation of Fe and S forms in soil affects the migration and activity of Cd, but the coordinated regulation of Cd activity by Fe and S under different redox conditions is still unclear. Here, Diffusive gradients in thin films (DGT), an in-situ monitoring technique, is used to explore the difference of the regulation of Cd activity in paddy fields with ferrihydrite (FH) and ferrihydrite coprecipitated by sulfate (FH-S) under the flooding and drainage conditions. The addition of FH-S and FH significantly reduced the activity of Cd (Dissolved, Exchanged, and CDGT-Cd). Compared with pure FH, the adsorption extent of Cd in FH was enhanced by increasing concentrations of SO42- (i.e., S/Fe ratio), which is attributed to the decrease in the crystallinity of FH by sulfate. During soil flooding, the addition of FH-S promoted the production of metal sulfide (CdS and FeS/FeS2). The activity of Cd increased after drainage, while the FH-S treatment groups delayed the release of Cd. After 30 days of drainage, the concentration of Cd in FH-S treatment groups decreased by 28.9-44.1 % compared with the control group. The fresh FeS/FeS2 is not the main adsorbent for fixing Cd, and due to the existence of oxidation compensation mechanism, the preferential oxidation of FeS/FeS2 delays the release of Cd in the drainage stage. Our study shed new light on the mechanism of Fe-S synergistic regulation of Cd and remediation of Cd-contaminated soils.

Pyrogenic Carbon Improves Cd Retention during Microbial Transformation of Ferrihydrite under Varying Redox Conditions

Fe(III) (oxyhydr)oxides are ubiquitous in paddy soils and play a key role in Cd retention. Recent studies report that pyrogenic carbon (PC) may largely affect the microbial transformation processes of Fe(III) (oxyhydr)oxides, yet the impact of PC on the fate of Fe(III) (oxyhydr)oxide-associated Cd during redox fluctuations remains unclear. Here, we investigated the effects of PC on Cd retention during microbial (Shewanella oneidensis MR-1) transformation of Cd(II)-bearing ferrihydrite under varying redox conditions. The results showed that in the absence of PC, microbial reduction of ferrihydrite resulted in Cd release under anoxic conditions and Fe(II) oxidation by oxygen resulted in Cd retention under subsequent oxic conditions. The presence of PC facilitated microbial ferrihydrite reductive dissolution under anoxic conditions, promoted Fe(II) oxidative precipitation under oxic conditions, and inhibited Cd release under both anoxic and oxic conditions. The presence of PC and frequent shifts in redox conditions (i.e., redox cycling) inhibited the transformation of ferrihydrite to highly crystalline goethite and magnetite that exhibited less Cd adsorption. As a result, PC enhanced Cd retention by 41-59% and 55-77% after the redox shift and redox cycling, respectively, while in the absence of PC, Cd retention decreased by 5% after the redox shift and increased by 11% after redox cycling. Sequential extraction analysis revealed that 63-78% of Cd was associated with Fe minerals, while 3-12% of Cd was bound to PC, indicating that PC promoted Cd retention mainly through inhibiting ferrihydrite transformation. Our results demonstrate the great impacts of PC on improving Cd retention under dynamic redox conditions, which is essential for applying PC in remediating Cd-contaminated paddy soils.

Mechanisms of S cooperating with Fe and Mn to regulate the conversion of Cd and Cu during soil redox process revealed by LDHs-DGT technology

The activity changes of Cd and Cu in paddy field were strongly influenced by the transformation of S, Fe and Mn species. However, in the process of soil redox, how S cooperates with Fe/Mn to regulate the law and mechanism of Cd and Cu speciation transformation still needs to be studied. In this study, we used DGT technology based on layer double hydroxides (LDHs) combined with pore water sampling to investigate soil redox changes, rice growth, and the effects of different forms of sulfur (S⁰, SO₄^2-) on soil Cd and Cu activities. The results showed that the concentrations of C_DGT-Cd and Cu in the soil decreased rapidly in the anaerobic stage, but increased slowly in the oxidative stage. Multiple regression analysis showed that the changes of Cu and Cd concentrations mainly depended on the changes of Fe/Mn morphology. Sulfur treatment promoted the dissolution of Fe/Mn oxides in the short term (<48 h), and the activities of C_DGT-Fe, Mn, and Cd increased simultaneously, but C_DGT-Cu was not affected. However, after long-term anaerobic conditions (>10 d), sulfur addition reduced the activities of C_DGT-Cd and Cu, and decreased the uptake of Cd and Cu by rice. During sulfate reduction, the sulfur addition treatment group resulted in a 24.5-50.2 % decrease in C_DGT-Fe, indicating that sulfur addition may delay the release of Cd and Cu after rice planting by promoting the formation of FeS/FeS₂. In addition, in the anaerobic stage, Cu formed sulfide before Cd and was fixed, and the higher thermodynamic stability of CuS would promote the dissolution of CdS in the oxidation stage. Overall, soil flooding with sulfur to enhance the generation of metal sulfides and secondary iron ores provides an opportunity to use sulfur as an environmentally friendly modifier to coordinate Fe, Mn to improve heavy metal-contaminated soils.

Continuous cultivation of the lithoautotrophic nitrate-reducing Fe(II)-oxidizing culture KS in a chemostat bioreactor

Laboratory-based studies on microbial Fe(II) oxidation are commonly performed for 5-10 days in small volumes with high substrate concentrations, resulting in geochemical gradients and volumetric effects caused by sampling. We used a chemostat to enable uninterrupted supply of medium and investigated autotrophic nitrate-reducing Fe(II)-oxidizing culture KS for 24 days. We analysed Fe- and N-speciation, cell-mineral associations, and the identity of minerals. Results were compared to batch systems (50 and 700 mL-static/shaken). The Fe(II) oxidation rate was highest in the chemostat with 7.57 mM Fe(II) d^-1 , while the extent of oxidation was similar to the other experimental setups (average oxidation of 92% of all Fe(II)). Short-range ordered Fe(III) phases, presumably ferrihydrite, precipitated and later goethite was detected in the chemostat. The 1 mM solid phase Fe(II) remained in the chemostat, up to 15 μM of reactive nitrite was measured, and 42% of visualized cells were partially or completely mineral-encrusted, likely caused by abiotic oxidation of Fe(II) by nitrite. Despite (partial) encrustation, cells were still viable. Our results show that even with similar oxidation rates as in batch cultures, cultivating Fe(II)-oxidizing microorganisms under continuous conditions reveals the importance of reactive nitrogen intermediates on Fe(II) oxidation, mineral formation and cell-mineral interactions.

Effect of humic acid on bioreduction of facet-dependent hematite by Shewanella putrefaciens CN-32

Interfacial reactions between iron (Fe) (hydr)oxide surfaces and the activity of bacteria during dissimilatory Fe reduction affect extracellular electron transfer. The presence of organic matter (OM) and exposed facets of Fe (hydr)oxides influence this process. However, the underlying interfacial mechanism of facet-dependent hematite and its toxicity toward microbes during bioreduction in the presence of OM remains unknown. Herein, humic acid (HA), as typical OM, was selected to investigate its effect on the bioreduction of hematite {100} and {001}. When HA concentration was increased from 0 to 500 mg L^-1, the bioreduction rates increased from 0.02 h^-1 to 0.04 h^-1 for hematite {100} and from 0.026 h^-1 to 0.05 h^-1 for hematite {001}. Since hematite {001} owned lower resistance than hematite {100} irrespective of the HA concentration, and hematite {100} was less favorable for reduction. Microscopy-based analysis showed that more hematite {001} nanoparticles adhered to the cell surface and were bound more closely to the bacteria. Moreover, less cell damage was observed in the HA-hematite {001} treatments. As the reaction progressed, some bacterial cells died or were inactivated; confocal laser scanning microscopy showed that bacterial survival was higher in the HA-hematite {001} treatments than in the HA-hematite {100} treatments after bioreduction. Spectroscopic analysis revealed that facet-dependent binding was primarily realized by surface complexation of carboxyl functional groups with structural Fe atoms, and that the binding order of HA functional groups and hematite was affected by the exposed facets. The exposed facets of hematite could influence the electrochemical properties and activity of bacteria, as well as the binding of bacteria and Fe oxides in the presence of OM, thereby governing the extracellular electron transfer and concomitant bioreduction of Fe (hydr)oxides. These results provide new insights into the interfacial reactions between OM and facet-dependent Fe oxides in anoxic, OM-rich soil and sediment environments.

Exploring the secondary mineral products generated by microbial iron respiration in Archean ocean simulations

Marine chemical sedimentary deposits known as Banded Iron Formations (BIFs) archive Archean ocean chemistry and, potentially, signs of ancient microbial life. BIFs contain a diversity of iron- and silica-rich minerals in disequilibrium, and thus many interpretations of these phases suggest they formed secondarily during early diagenetic processes. One such hypothesis posits that the early diagenetic microbial respiration of primary iron(III) oxides in BIFs resulted in the formation of other iron phases, including the iron-rich silicates, carbonates, and magnetite common in BIF assemblages. Here, we simulated this proposed pathway in laboratory incubations combining a model dissimilatory iron-reducing (DIR) bacterium, Shewanella putrefaciens CN32, and the ferric oxyhydroxide mineral ferrihydrite under conditions mimicking the predicted Archean seawater geochemistry. We assessed the impact of dissolved silica, calcium, and magnesium on the bioreduced precipitates. After harvesting the solid products from these experiments, we analyzed the reduced mineral phases using Raman spectroscopy, electron microscopy, powder x-ray diffraction, and spectrophotometric techniques to identify mineral precipitates and track the bulk distributions of Fe(II) and Fe(III). These techniques detected a diverse range of calcium carbonate morphologies and polymorphism in incubations with calcium, as well as secondary ferric oxide phases like goethite in silica-free experiments. We also identified aggregates of curling, iron- and silica-rich amorphous precipitates in all incubations amended with silica. Although ferric oxides persist even in our electron acceptor-limited incubations, our observations indicate that microbial iron reduction of ferrihydrite is a viable pathway for the formation of early iron silicate phases. This finding allows us to draw parallels between our experimental proto-silicates and the recently characterized iron silicate nanoinclusions in BIF chert deposits, suggesting that early iron silicates could possibly be signatures of iron-reducing metabolisms on early Earth.

Humic acids alleviate the toxicity of reduced graphene oxide modified by nanosized palladium in microalgae

The use of graphene-family materials modified by nanosized palladium (Pd/GFMs) has intensified rapidly in various fields; however, the effects of environmental factors (e.g., natural organic matter (NOM)) on the transformation and ecotoxicity of Pd/GFMs remain largely unknown. In this study, reduced graphene oxide modified by nanosized Pd (Pd/rGO) was incubated with humic acid (HA) under light irradiation for 56 d to explore the effects of NOM on the physicochemical transformations (e.g., defects, surface charges and dispersity) and biological toxicity (e.g., growth inhibition, oxidative stress and ultrastructural damage on algae cells) of Pd/GFMs. The results revealed that HA increased the defects and dispersity of Pd/rGO. Growth inhibition, damage to cellular ultrastructures, and oxidative stress in microalgae cells were induced by Pd/rGO, and corresponding defense responses (e.g., superoxide dismutase, peroxidase and glutathione) were activated. HA diminished the above defense responses in microalgae triggered by Pd/rGO by regulating GSH metabolism and the alanine biosynthesis pathway. In the presence of HA, cell wall damage (i.e., hole formation) caused by exposure to Pd/rGO was restored, and the plasmolysis area was reduced by 28.6 %. In addition, growth inhibition, lipid peroxidation, loss of mitochondrial membrane potential and ROS formation induced by 1.0 mg/L MoS₂NPs were decreased by 1.4-65.6 %, 13.9-26.1 %, 21.8-58.3 % and 9.6-16.1 %, respectively. These findings highlight the need to consider the effects of HA on the environmental transformation and biological toxicity of Pd/GFMs, which presents significant implications for the management of Pd/GFMs.

Enhanced Microbial Ferrihydrite Reduction by Pyrogenic Carbon: Impact of Graphitic Structures

Electron-shuttling agents such as pyrogenic carbon (PC) can mediate long-distance electron transfer and play numerous key roles in aquatic and soil biogeochemical processes. The electron-shuttling capacity of PC relies on both the surface oxygen-containing functional groups and bulk graphitic structures. Although the impacts of oxygen-containing functional groups on the electron-shuttling performance of PC are well studied, there remains insufficient understanding on the function of graphitic structures. Here, we studied the functions of PC in mediating microbial (Shewanella oneidensis MR-1) reduction of ferrihydrite, a classic and geochemically important soil redox process. The results show that PC enhanced microbial ferrihydrite reduction by 20-115% and the reduction rates increased with PC pyrolysis temperature increasing from 500 to 900 °C. For PC prepared at low temperature (500-600 °C), the electron-shuttling capacity of PC is mainly attributed to its oxygen-containing functional groups, as indicated by a 50-60% decline in the ferrihydrite reduction rate when PC was reduced under a H₂ atmosphere to remove surface oxygen-containing functional groups. In stark contrast, for PC prepared at higher temperature (700-900 °C), the formation of PC graphitic structures was enhanced, as suggested by the higher electrical conductivity; accordingly, the graphitic structure exhibits greater importance in shuttling electrons, as demonstrated by a minor decline (10-18%) in the ferrihydrite reduction rate after H₂ treatment of PC. This study provides new insights into the nonlinear and combined role of graphitic structures and oxygen-containing functional groups of PC in mediating electron transfer, where the pyrolysis temperature of PC acts as a key factor in determining the electron-shuttling pathways.

Microbial processes during deposition and diagenesis of Banded Iron Formations

Banded Iron Formations (BIFs) are marine chemical sediments consisting of alternating iron (Fe)-rich and silica (Si)-rich bands which were deposited throughout much of the Precambrian era. BIFs represent important proxies for the geochemical composition of Precambrian seawater and provide evidence for early microbial life. Iron present in BIFs was likely precipitated in the form of Fe3+ (Fe(III)) minerals, such as ferrihydrite (Fe(OH)3), either through the metabolic activity of anoxygenic photoautotrophic Fe2+ (Fe(II))-oxidizing bacteria (photoferrotrophs), by microaerophilic bacteria, or by the oxidation of dissolved Fe(II) by O2 produced by early cyanobacteria. However, in addition to oxidized Fe-bearing minerals such as hematite (FeIII 2O3), (partially) reduced minerals such as magnetite (FeIIFeIII 2O4) and siderite (FeIICO3) are found in BIFs as well. The presence of reduced Fe in BIFs has been suggested to reflect the reduction of primary Fe(III) minerals by dissimilatory Fe(III)-reducing bacteria, or by metamorphic (high pressure and temperature) reactions occurring in presence of buried organic matter. Here, we present the current understanding of the role of Fe-metabolizing bacteria in the deposition of BIFs, as well as competing hypotheses that favor an abiotic model for BIF deposition. We also discuss the potential abiotic and microbial reduction of Fe(III) in BIFs after deposition. Further, we review the availability of essential nutrients (e.g. P and Ni) and their implications on early Earth biogeochemistry. Overall, the combined results of various ancient seawater analogue experiments aimed at assessing microbial iron cycling pathways, coupled with the analysis of the BIF rock record, point towards a strong biotic influence during BIF genesis.

Bioanalytical applications of Mössbauer spectroscopy

Data on the applications of Mössbauer spectroscopy in the transmission (mainly on 57Fe nuclei) and emission (on 57Co nuclei) variants for analytical studies at the molecular level of metal-containing components in a wide range of biological objects (from biocomplexes and biomacromolecules to supramolecular structures, cells, tissues and organisms) and of objects that are participants or products of biological processes, published in the last 15 years are discussed and systematized. The prospects of the technique in its biological applications, including the developing fields (emission variant, use of synchrotron radiation), are formulated.

The bibliography includes 248 references.

Persistent arsenate-iron(iii) oxyhydroxide-organic matter nanoaggregates observed in coal

Understanding how natural nanoaggregates of iron (Fe) and organic matter (OM), currently identified in organic rich soil or peat, interact with metals and metalloids is environmentally significant. Coal is also organic-rich and exemplifies anoxic sedimentary environments with Fe usually as pyrite and not oxides. Here, we analyze the local structure of Fe (6880-21 700 mg kg^-1) and As (45-5680 mg kg^-1) in representative Guizhou coal samples using X-ray absorption near-edge structure and extended X-ray absorption fine structure (XANES and EXAFS) to illustrate how Fe(iii) and As(v) are preserved in coal formed from reduced, organic-rich precursors. Arsenic XANES indicates that >80% of As exists as As(v) with <14% of As associated with sulfides in 5 Guizhou coal samples, confirming published but unexplained results. An As-Fe shell at 3.25-3.29 Å in the As EXAFS suggests that this As(v) is adsorbed on Fe(iii) oxyhydroxides as evidenced by Fe EXAFS in these coal samples. Significantly, lower Fe-Fe coordination numbers (CN) of 0.6-1.1 relative to those in 2-line ferrihydrite (CN = 1.6) and goethite (CN = 2.1) suggest that these Fe(iii) oxyhydroxides are likely Fe-OM nanoaggregates protected by OM encapsulation and adsorption of arsenate. Such structurally stabilized composites of As(v)-Fe(iii)-OM may be more widely distributed and allow oxidized As and Fe to persist in other organic-rich, reducing environments.

Extracellular polymeric substances from Shewanella oneidensis MR-1 biofilms mediate the transformation of Ferrihydrite

Extracellular polymeric substances (EPS) of dissimilatory iron-reducing bacteria (DIRB) such as Shewanella oneidensis MR-1 play a crucial role in the biotransformation of iron-containing minerals, but the mechanism has not been fully deciphered. Herein, abiotic and biotic transformation of ferrihydrite (Fh) were compared to clarify the contributions of MR-1, EPS-free MR-1 (MR-1-EPS), loosely bound EPS (LB-EPS), and tightly bound EPS (TB-EPS). The results of abiotic Fh transformation indicated that EPS did not block the Fh surfaces and thus has an insignificant effect on the adsorbed Fe(II)-Fh interaction. The complexation of the Fe(III) intermediate (Fe(III)_active) with EPS, especially LB-EPS, however, inhibited the nucleation of secondary Fe minerals and changed the crystallization pathway. For biotic Fh transformation, on the other hand, EPS had dual effects that accelerated Fh bioreduction due to the enhanced extracellular electron transfer (EET) and constrained the following Fh mineralization by cutting of the chain reactions leading to mineral crystallization. Our finding also suggested that the effects of EPS on Fh biotransformation largely depend on the chemical properties of EPS, especially the polar functional groups such as carboxyl and phosphate, because of their important abilities for the cell attachment and Fe(II)/Fe(III) binding.

Modified montmorillonite and illite adjusted the preference of biotic and abiotic pathways of humus formation during chicken manure composting

The study aimed to identify the preference of pathways of humus formation. Five lab-scale composting experiments were established: the control (CK), montmorillonite addition (M), illite addition (I), thermal treatment montmorillonite addition (M-) and thermal treatment illite addition (I-). Results showed humus content was increased by 11.5%, 39.3%, 37.2%, 30.9% and 27.6% during CK, M-, M, I- and I composting. Meanwhile, Redundancy analysis indicated the bands of bacteria community related to humic acid (HA) were more abundant in the M- and I- treatments. Furthermore, structural equation model and variance partitioning analysis demonstrated that M- and I- treatments promoted precursors to synthesize HA by coordinated regulation of biotic pathway and abiotic pathway, the increase of HA in the M and I treatments mainly through the abiotic pathway. In summary, an effective method was proposed to improve humus production by adjusting the preference of biotic and abiotic pathways of humus formation.