1
|
Yang X, Wang L, Smaluk V, Shaftan T, Wang T, Bouet N, D’Amen G, Wan W, Musumeci P. Simulation Study of High-Precision Characterization of MeV Electron Interactions for Advanced Nano-Imaging of Thick Biological Samples and Microchips. NANOMATERIALS (BASEL, SWITZERLAND) 2024; 14:1797. [PMID: 39591038 PMCID: PMC11597139 DOI: 10.3390/nano14221797] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/12/2024] [Revised: 11/05/2024] [Accepted: 11/07/2024] [Indexed: 11/28/2024]
Abstract
The resolution of a mega-electron-volt scanning transmission electron microscope (MeV-STEM) is primarily governed by the properties of the incident electron beam and angular broadening effects that occur within thick biological samples and microchips. A precise understanding and mitigation of these constraints require detailed knowledge of beam emittance, aberrations in the STEM column optics, and energy-dependent elastic and inelastic critical angles of the materials being examined. This simulation study proposes a standardized experimental framework for comprehensively assessing beam intensity, divergence, and size at the sample exit. This framework aims to characterize electron-sample interactions, reconcile discrepancies among analytical models, and validate Monte Carlo (MC) simulations for enhanced predictive accuracy. Our numerical findings demonstrate that precise measurements of these parameters, especially angular broadening, are not only feasible but also essential for optimizing imaging resolution in thick biological samples and microchips. By utilizing an electron source with minimal emittance and tailored beam characteristics, along with amorphous ice and silicon samples as biological proxies and microchip materials, this research seeks to optimize electron beam energy by focusing on parameters to improve the resolution in MeV-STEM/TEM. This optimization is particularly crucial for in situ imaging of thick biological samples and for examining microchip defects with nanometer resolutions. Our ultimate goal is to develop a comprehensive mapping of the minimum electron energy required to achieve a nanoscale resolution, taking into account variations in sample thickness, composition, and imaging mode.
Collapse
Affiliation(s)
- Xi Yang
- National Synchrotron Light Source II, Brookhaven National Laboratory, Upton, NY 11973, USA; (V.S.); (T.S.); (T.W.); (N.B.)
| | - Liguo Wang
- Laboratory for BioMolecular Structure, Brookhaven National Laboratory, Upton, NY 11973, USA;
| | - Victor Smaluk
- National Synchrotron Light Source II, Brookhaven National Laboratory, Upton, NY 11973, USA; (V.S.); (T.S.); (T.W.); (N.B.)
| | - Timur Shaftan
- National Synchrotron Light Source II, Brookhaven National Laboratory, Upton, NY 11973, USA; (V.S.); (T.S.); (T.W.); (N.B.)
| | - Tianyi Wang
- National Synchrotron Light Source II, Brookhaven National Laboratory, Upton, NY 11973, USA; (V.S.); (T.S.); (T.W.); (N.B.)
| | - Nathalie Bouet
- National Synchrotron Light Source II, Brookhaven National Laboratory, Upton, NY 11973, USA; (V.S.); (T.S.); (T.W.); (N.B.)
| | - Gabriele D’Amen
- Physics, Brookhaven National Laboratory, Upton, NY 11973, USA;
| | - Weishi Wan
- School of Physical Science and Technology, ShanghaiTech University, Shanghai 201210, China;
| | - Pietro Musumeci
- Department of Physics and Astronomy, University of California, Los Angeles (UCLA), Los Angeles, CA 90095, USA;
| |
Collapse
|
2
|
Black AP, Escudero C, Fauth F, Fehse M, Agostini G, Reynaud M, Houdeville RG, Chatzogiannakis D, Orive J, Ramo-Irurre A, Casas-Cabanas M, Palacin MR. Beam Effects in Synchrotron Radiation Operando Characterization of Battery Materials: X-Ray Diffraction and Absorption Study of LiNi 0.33Mn 0.33Co 0.33O 2 and LiFePO 4 Electrodes. CHEMISTRY OF MATERIALS : A PUBLICATION OF THE AMERICAN CHEMICAL SOCIETY 2024; 36:5596-5610. [PMID: 38883437 PMCID: PMC11170951 DOI: 10.1021/acs.chemmater.4c00597] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 03/01/2024] [Revised: 05/03/2024] [Accepted: 05/06/2024] [Indexed: 06/18/2024]
Abstract
Operando synchrotron radiation-based techniques are a precious tool in battery research, as they enable the detection of metastable intermediates and ensure characterization under realistic cycling conditions. However, they do not come exempt of risks. The interaction between synchrotron radiation and samples, particularly within an active electrochemical cell, can induce relevant effects at the irradiated spot, potentially jeopardizing the experiment's reliability and biasing data interpretation. With the aim of contributing to this ongoing debate, a systematic investigation into these phenomena was carried out by conducting a root cause analysis of beam-induced effects during the operando characterization of two of the most commonly employed positive electrode materials in commercial Li-ion batteries: LiNi0.33Mn0.33Co0.33O2 and LiFePO4. The study spans across diverse experimental conditions involving different cell types and absorption and scattering techniques and seeks to correlate beam effects with factors such as radiation energy, photon flux, exposure time, and other parameters associated with radiation dosage. Finally, it provides a comprehensive set of guidelines and recommendations for assessing and mitigating beam-induced effects that may affect the outcome of battery operando experiments.
Collapse
Affiliation(s)
- Ashley P Black
- Institut de Ciència de Materials de Barcelona, ICMAB-CSIC, Campus de la UAB, Bellaterra 08193, Spain
| | - Carlos Escudero
- ALBA Synchrotron Light Source, Cerdanyola del Vallès 08290, Spain
| | - François Fauth
- ALBA Synchrotron Light Source, Cerdanyola del Vallès 08290, Spain
| | - Marcus Fehse
- Centre for Cooperative Research on Alternative Energies (CIC energiGUNE), Basque Research and Technology Alliance (BRTA), Technology Park, Albert Einstein 48, Vitoria-Gasteiz, Alava 01510, Spain
| | | | - Marine Reynaud
- Centre for Cooperative Research on Alternative Energies (CIC energiGUNE), Basque Research and Technology Alliance (BRTA), Technology Park, Albert Einstein 48, Vitoria-Gasteiz, Alava 01510, Spain
| | - Raphaelle G Houdeville
- Institut de Ciència de Materials de Barcelona, ICMAB-CSIC, Campus de la UAB, Bellaterra 08193, Spain
| | - Dimitrios Chatzogiannakis
- Institut de Ciència de Materials de Barcelona, ICMAB-CSIC, Campus de la UAB, Bellaterra 08193, Spain
- Centre for Cooperative Research on Alternative Energies (CIC energiGUNE), Basque Research and Technology Alliance (BRTA), Technology Park, Albert Einstein 48, Vitoria-Gasteiz, Alava 01510, Spain
| | - Joseba Orive
- Centre for Cooperative Research on Alternative Energies (CIC energiGUNE), Basque Research and Technology Alliance (BRTA), Technology Park, Albert Einstein 48, Vitoria-Gasteiz, Alava 01510, Spain
| | - Alejandro Ramo-Irurre
- Institut de Ciència de Materials de Barcelona, ICMAB-CSIC, Campus de la UAB, Bellaterra 08193, Spain
| | - Montse Casas-Cabanas
- Centre for Cooperative Research on Alternative Energies (CIC energiGUNE), Basque Research and Technology Alliance (BRTA), Technology Park, Albert Einstein 48, Vitoria-Gasteiz, Alava 01510, Spain
- IKERBASQUE, Basque Foundation for Science, Plaza Euskadi 5, Bilbao 48009, Spain
| | - M Rosa Palacin
- Institut de Ciència de Materials de Barcelona, ICMAB-CSIC, Campus de la UAB, Bellaterra 08193, Spain
| |
Collapse
|
3
|
Borrelli S, de Raadt TCH, van der Geer SB, Mutsaers PHA, van Leeuwen KAH, Luiten OJ. Direct Observation of Sub-Poissonian Temporal Statistics in a Continuous Free-Electron Beam with Subpicosecond Resolution. PHYSICAL REVIEW LETTERS 2024; 132:115001. [PMID: 38563914 DOI: 10.1103/physrevlett.132.115001] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/25/2023] [Accepted: 01/23/2024] [Indexed: 04/04/2024]
Abstract
We present a novel method to measure the arrival time statistics of continuous electron beams with subpicosecond resolution, based on the combination of an rf deflection cavity and fast single electron imaging. We observe Poissonian statistics within time bins from 100 to 2 ns and increasingly pronounced sub-Poissonian statistics as the time bin decreases from 2 ps to 340 fs. This 2D streak camera, in principle, enables femtosecond-level arrival time measurements, paving the way to observing Pauli blocking effects in electron beams and thus serving as an essential diagnostic tool toward degenerate electron beam sources for free-electron quantum optics.
Collapse
Affiliation(s)
- S Borrelli
- Department of Applied Physics, Eindhoven University of Technology, Groene Loper 19, 5612 AP, Eindhoven, The Netherlands
| | - T C H de Raadt
- Department of Applied Physics, Eindhoven University of Technology, Groene Loper 19, 5612 AP, Eindhoven, The Netherlands
| | - S B van der Geer
- Department of Applied Physics, Eindhoven University of Technology, Groene Loper 19, 5612 AP, Eindhoven, The Netherlands
| | - P H A Mutsaers
- Department of Applied Physics, Eindhoven University of Technology, Groene Loper 19, 5612 AP, Eindhoven, The Netherlands
| | - K A H van Leeuwen
- Department of Applied Physics, Eindhoven University of Technology, Groene Loper 19, 5612 AP, Eindhoven, The Netherlands
| | - O J Luiten
- Department of Applied Physics, Eindhoven University of Technology, Groene Loper 19, 5612 AP, Eindhoven, The Netherlands
| |
Collapse
|
4
|
Willis SA, Flannigan DJ. Stable Photoemission from the Wehnelt Aperture Surface in 4D Ultrafast Electron Microscopy. MICROSCOPY AND MICROANALYSIS : THE OFFICIAL JOURNAL OF MICROSCOPY SOCIETY OF AMERICA, MICROBEAM ANALYSIS SOCIETY, MICROSCOPICAL SOCIETY OF CANADA 2023; 29:1842-1844. [PMID: 37612902 DOI: 10.1093/micmic/ozad067.1103] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 08/25/2023]
Affiliation(s)
- Simon A Willis
- Department of Chemical Engineering and Materials Science, University of Minnesota, Minneapolis, MN, United States
- Minnesota Institute of Ultrafast Science, University of Minnesota, Minneapolis, MN, United States
| | - David J Flannigan
- Department of Chemical Engineering and Materials Science, University of Minnesota, Minneapolis, MN, United States
- Minnesota Institute of Ultrafast Science, University of Minnesota, Minneapolis, MN, United States
| |
Collapse
|
5
|
Reisbick SA, Pofelski A, Han MG, Liu C, Montgomery E, Jing C, Sawada H, Zhu Y. Characterization of transverse electron pulse trains using RF powered traveling wave metallic comb striplines. Ultramicroscopy 2023; 249:113733. [PMID: 37030159 DOI: 10.1016/j.ultramic.2023.113733] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/19/2022] [Revised: 02/20/2023] [Accepted: 04/03/2023] [Indexed: 04/08/2023]
Abstract
Advancements in ultrafast electron microscopy have allowed elucidation of spatially selective structural dynamics. However, as the spatial resolution and imaging capabilities have made progress, quantitative characterization of the electron pulse trains has not been reported at the same rate. In fact, inexperienced users have difficulty replicating the technique because only a few dedicated microscopes have been characterized thoroughly. Systems replacing laser driven photoexcitation with electrically driven deflectors especially suffer from a lack of quantified characterization because of the limited quantity. The primary advantages to electrically driven systems are broader frequency ranges, ease of use and simple synchronization to electrical pumping. Here, we characterize the technical parameters for electrically driven UEM including the shape, size and duration of the electron pulses using low and high frequency chopping methods. At high frequencies, pulses are generated by sweeping the electron beam across a chopping aperture. For low frequencies, the beam is continuously forced off the optic axis by a DC potential, then momentarily aligned by a countering pulse. Using both methods, we present examples that measure probe durations of 2 ns and 10 ps for the low and high frequency techniques, respectively. We also discuss how the implementation of a pulsed probe affects STEM imaging conditions by adjusting the first condenser lens.
Collapse
|
6
|
Flannigan DJ, VandenBussche EJ. Pulsed-beam transmission electron microscopy and radiation damage. Micron 2023; 172:103501. [PMID: 37390662 DOI: 10.1016/j.micron.2023.103501] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/22/2023] [Revised: 06/20/2023] [Accepted: 06/21/2023] [Indexed: 07/02/2023]
Abstract
We review the use of pulsed electron-beams in transmission electron microscopes (TEMs) for the purpose of mitigating specimen damage. We begin by placing the importance of TEMs with respect to materials characterization into proper context, and we provide a brief overview of established methods for reducing or eliminating the deleterious effects of beam-induced damage. We then introduce the concept of pulsed-beam TEM, and we briefly describe the basic methods and instrument configurations used to create so-called temporally structured electron beams. Following a brief overview of the use of high-dose-rate pulsed-electron beams in cancer radiation therapy, we review historical speculations and more recent compelling but mostly anecdotal findings of a pulsed-beam TEM damage effect. This is followed by an in-depth technical review of recent works seeking to establish cause-and-effect relationships, to conclusively uncover the presence of an effect, and to explore the practicality of the approach. These studies, in particular, provide the most compelling evidence to date that using a pulsed electron beam in the TEM is indeed a viable way to mitigate damage. Throughout, we point out current gaps in understanding, and we conclude with a brief perspective of current needs and future directions.
Collapse
Affiliation(s)
- David J Flannigan
- Department of Chemical Engineering and Materials Science, University of Minnesota, 421 Washington Avenue SE, Minneapolis, MN 55455, USA; Minnesota Institute for Ultrafast Science, University of Minnesota, Minneapolis, MN 55455, USA.
| | - Elisah J VandenBussche
- Department of Chemical Engineering and Materials Science, University of Minnesota, 421 Washington Avenue SE, Minneapolis, MN 55455, USA; Minnesota Institute for Ultrafast Science, University of Minnesota, Minneapolis, MN 55455, USA
| |
Collapse
|
7
|
Jiang N. Electron irradiation effects in transmission electron microscopy: Random displacements and collective migrations. Micron 2023; 171:103482. [PMID: 37167653 DOI: 10.1016/j.micron.2023.103482] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/03/2023] [Revised: 05/02/2023] [Accepted: 05/02/2023] [Indexed: 05/13/2023]
Abstract
Electron beam damage in transmission electron microscopy (TEM) is complicated because the damage phenomena can be the result of random atomic displacements or collective migrations. The former is categorized as the primary beam effects and the latter is the secondary beam effects. The mechanisms for these two distinguishing atomic processes of damage are different. The primary beam effects can be caused by the mechanisms of knock-on and/or radiolysis, while the secondary effects must be driven by a field that is induced by electron irradiation. One such field has been identified to be the electric field produced by the accumulated charges due to the ejection of secondary and Auger electrons from the irradiated region. One convincing example is the electron irradiation-induced domain switch in ferroelectric materials, in which the collective cation displacements are driven by the induced electric field. A detailed interpretation is given in this review. The sintering of metal NPs under electron irradiation is a secondary beam effect and is most likely also caused by the induced electric fields. The interactions between the charged NP and substrate, and between charged NPs, result in NP motion. Interchanging atoms between NPs during the sintering may also be driven by the electric fields. Although many beam-damage phenomena in C nanotubes and layered materials, such as graphene, BN, and transition metal dichalcogenides, are caused by the primary beam effects and have been well studied experimentally and theoretically in the literature, some phenomena from the secondary beam effects have also been identified in this review. These phenomena are sensitive to electron current density, the shape and orientation of the specimen, and even the illumination mode (i.e., TEM or STEM). Unfortunately, the mechanisms responsible for these phenomena still need to be clarified.
Collapse
Affiliation(s)
- Nan Jiang
- Department of Physics, Arizona State University, Tempe, AZ 85281-1504, USA.
| |
Collapse
|
8
|
Du DX, Simjanoska M, Fitzpatrick AWP. Four-dimensional microED of conformational dynamics in protein microcrystals on the femto-to-microsecond timescales. J Struct Biol 2023; 215:107941. [PMID: 36773734 DOI: 10.1016/j.jsb.2023.107941] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/28/2022] [Revised: 02/03/2023] [Accepted: 02/07/2023] [Indexed: 02/12/2023]
Abstract
As structural determination of protein complexes approaches atomic resolution, there is an increasing focus on conformational dynamics. Here we conceptualize the combination of two techniques which have become established in recent years: microcrystal electron diffraction and ultrafast electron microscopy. We show that the extremely low dose of pulsed photoemission still enables microED due to the strength of the electron bunching from diffraction of the protein crystals. Indeed, ultrafast electron diffraction experiments on protein crystals have already been demonstrated to be effective in measuring intermolecular forces in protein microcrystals. We discuss difficulties that may arise in the acquisition and processing of data and the overall feasibility of the experiment, paying specific attention to dose and signal-to-noise ratio. In doing so, we outline a detailed workflow that may be effective in minimizing the dose on the specimen. A series of model systems that would be good candidates for initial experiments is provided.
Collapse
Affiliation(s)
- Daniel X Du
- Department of Biochemistry and Molecular Biophysics, Columbia University, New York, NY 10032, USA; Mortimer B. Zuckerman Mind Brain Behavior Institute, Columbia University, New York, NY 10027, USA; Taub Institute for Research on Alzheimer's Disease and the Aging Brain, Columbia University Irving Medical Center, 630 West 168th Street, New York, NY 10032, USA
| | - Marija Simjanoska
- Department of Biochemistry and Molecular Biophysics, Columbia University, New York, NY 10032, USA; Mortimer B. Zuckerman Mind Brain Behavior Institute, Columbia University, New York, NY 10027, USA; Taub Institute for Research on Alzheimer's Disease and the Aging Brain, Columbia University Irving Medical Center, 630 West 168th Street, New York, NY 10032, USA
| | - Anthony W P Fitzpatrick
- Department of Biochemistry and Molecular Biophysics, Columbia University, New York, NY 10032, USA; Mortimer B. Zuckerman Mind Brain Behavior Institute, Columbia University, New York, NY 10027, USA; Taub Institute for Research on Alzheimer's Disease and the Aging Brain, Columbia University Irving Medical Center, 630 West 168th Street, New York, NY 10032, USA.
| |
Collapse
|
9
|
Time-resolved transmission electron microscopy for nanoscale chemical dynamics. Nat Rev Chem 2023; 7:256-272. [PMID: 37117417 DOI: 10.1038/s41570-023-00469-y] [Citation(s) in RCA: 14] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 01/12/2023] [Indexed: 02/24/2023]
Abstract
The ability of transmission electron microscopy (TEM) to image a structure ranging from millimetres to Ångströms has made it an indispensable component of the toolkit of modern chemists. TEM has enabled unprecedented understanding of the atomic structures of materials and how structure relates to properties and functions. Recent developments in TEM have advanced the technique beyond static material characterization to probing structural evolution on the nanoscale in real time. Accompanying advances in data collection have pushed the temporal resolution into the microsecond regime with the use of direct-electron detectors and down to the femtosecond regime with pump-probe microscopy. Consequently, studies have deftly applied TEM for understanding nanoscale dynamics, often in operando. In this Review, time-resolved in situ TEM techniques and their applications for probing chemical and physical processes are discussed, along with emerging directions in the TEM field.
Collapse
|
10
|
Du DX, Fitzpatrick AW. Design of an ultrafast pulsed ponderomotive phase plate for cryo-electron tomography. CELL REPORTS METHODS 2023; 3:100387. [PMID: 36814846 PMCID: PMC9939428 DOI: 10.1016/j.crmeth.2022.100387] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/27/2022] [Revised: 09/09/2022] [Accepted: 12/20/2022] [Indexed: 01/15/2023]
Abstract
Ponderomotive phase plates have shown that temporally consistent phase contrast is possible within electron microscopes via high-fluence static laser modes resonating in Fabry-Perot cavities. Here, we explore using pulsed laser beams as an alternative method of generating high fluences. We find through forward-stepping finite element models that picosecond or shorter interactions are required for meaningful fluences and phase shifts, with higher pulse energies and smaller beam waists leading to predicted higher fluences. An additional model based on quasi-classical assumptions is used to discover the shape of the phase plate by incorporating the oscillatory nature of the electric field. From these results, we find the transient nature of the laser pulses removes the influence of Kapitza-Dirac diffraction patterns that appear in the static resonator cases. We conclude by predicting that a total laser pulse energy of 8.7 μJ is enough to induce the required π/2 phase shift for Zernike-like phase microscopy.
Collapse
Affiliation(s)
- Daniel X. Du
- Mortimer B. Zuckerman Mind Brain Behavior Institute, Columbia University, New York, NY 10027, USA
- Department of Biochemistry and Molecular Biophysics, Columbia University, New York, NY 10032, USA
- Taub Institute for Research on Alzheimer’s Disease and the Aging Brain, Columbia University Irving Medical Center, 630 West 168th Street, New York, NY 10032, USA
| | - Anthony W.P. Fitzpatrick
- Mortimer B. Zuckerman Mind Brain Behavior Institute, Columbia University, New York, NY 10027, USA
- Department of Biochemistry and Molecular Biophysics, Columbia University, New York, NY 10032, USA
- Taub Institute for Research on Alzheimer’s Disease and the Aging Brain, Columbia University Irving Medical Center, 630 West 168th Street, New York, NY 10032, USA
| |
Collapse
|
11
|
Schreiber MT, Maigné A, Beleggia M, Shibata S, Wolf M. Temporal dynamics of charge buildup in cryo-electron microscopy. J Struct Biol X 2022; 7:100081. [PMID: 36632442 PMCID: PMC9826809 DOI: 10.1016/j.yjsbx.2022.100081] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022] Open
Abstract
It is well known that insulating samples can accumulate electric charges from exposure to an electron beam. How the accumulation of charge affects imaging parameters and sample stability in transmission electron microscopy is poorly understood. To quantify these effects, it is important to know how the charge is distributed within the sample and how it builds up over time. In the present study, we determine the spatial distribution and temporal dynamics of charge accumulation on vitreous ice samples with embedded proteins through a combination of modeling and Fresnel diffraction experiments. Our data reveal a rapid evolution of the charge state on ice upon initial exposure to the electron beam accompanied by charge gradients at the interfaces between ice and carbon films. We demonstrate that ice film movement and charge state variations occur upon electron beam exposure and are dose-rate dependent. Both affect the image defocus through a combination of sample height changes and lensing effects. Our results may be used as a guide to improve sample preparation, data collection, and data processing for imaging of dose-sensitive samples.
Collapse
Affiliation(s)
- Makoto Tokoro Schreiber
- Molecular Cryo-Electron Microscopy Unit, Okinawa Institute of Science and Technology Graduate University, 1919-1 Tancha, Onna-son, Okinawa, Japan
| | - Alan Maigné
- Molecular Cryo-Electron Microscopy Unit, Okinawa Institute of Science and Technology Graduate University, 1919-1 Tancha, Onna-son, Okinawa, Japan
| | - Marco Beleggia
- DTU Nanolab, Technical University of Denmark, 2800 Kgs. Lyngby, Denmark
| | - Satoshi Shibata
- Molecular Cryo-Electron Microscopy Unit, Okinawa Institute of Science and Technology Graduate University, 1919-1 Tancha, Onna-son, Okinawa, Japan
| | - Matthias Wolf
- Molecular Cryo-Electron Microscopy Unit, Okinawa Institute of Science and Technology Graduate University, 1919-1 Tancha, Onna-son, Okinawa, Japan,Institute of Biological Chemistry, Academia Sinica, Nankang, Taipei 115, Taiwan,Corresponding author at: Molecular Cryo-Electron Microscopy Unit, Okinawa Institute of Science and Technology Graduate University, 1919-1 Tancha, Onna-son, Okinawa, Japan.
| |
Collapse
|
12
|
Xue H, Zhang M, Liu J, Wang J, Ren G. Cryo-electron tomography related radiation-damage parameters for individual-molecule 3D structure determination. Front Chem 2022; 10:889203. [PMID: 36110139 PMCID: PMC9468540 DOI: 10.3389/fchem.2022.889203] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/03/2022] [Accepted: 07/13/2022] [Indexed: 11/28/2022] Open
Abstract
To understand the dynamic structure-function relationship of soft- and biomolecules, the determination of the three-dimensional (3D) structure of each individual molecule (nonaveraged structure) in its native state is sought-after. Cryo-electron tomography (cryo-ET) is a unique tool for imaging an individual object from a series of tilted views. However, due to radiation damage from the incident electron beam, the tolerable electron dose limits image contrast and the signal-to-noise ratio (SNR) of the data, preventing the 3D structure determination of individual molecules, especially at high-resolution. Although recently developed technologies and techniques, such as the direct electron detector, phase plate, and computational algorithms, can partially improve image contrast/SNR at the same electron dose, the high-resolution structure, such as tertiary structure of individual molecules, has not yet been resolved. Here, we review the cryo-electron microscopy (cryo-EM) and cryo-ET experimental parameters to discuss how these parameters affect the extent of radiation damage. This discussion can guide us in optimizing the experimental strategy to increase the imaging dose or improve image SNR without increasing the radiation damage. With a higher dose, a higher image contrast/SNR can be achieved, which is crucial for individual-molecule 3D structure. With 3D structures determined from an ensemble of individual molecules in different conformations, the molecular mechanism through their biochemical reactions, such as self-folding or synthesis, can be elucidated in a straightforward manner.
Collapse
Affiliation(s)
- Han Xue
- The Molecular Foundry, Lawrence Berkeley National Laboratory, Berkeley, CA, United States
- Beijing National Laboratory for Molecular Science, Institute of Chemistry, Chinese Academy of Sciences, Beijing, China
| | - Meng Zhang
- The Molecular Foundry, Lawrence Berkeley National Laboratory, Berkeley, CA, United States
| | - Jianfang Liu
- The Molecular Foundry, Lawrence Berkeley National Laboratory, Berkeley, CA, United States
| | - Jianjun Wang
- Beijing National Laboratory for Molecular Science, Institute of Chemistry, Chinese Academy of Sciences, Beijing, China
| | - Gang Ren
- The Molecular Foundry, Lawrence Berkeley National Laboratory, Berkeley, CA, United States
| |
Collapse
|
13
|
Chen C, Guo X, Zhao G, Yao Y, Zhu Y. Effects of electron irradiation on structure and bonding of polymer spherulite thin films. POLYMER 2022. [DOI: 10.1016/j.polymer.2022.125195] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/16/2022]
|
14
|
Shiloh R, Chlouba T, Hommelhoff P. Quantum-Coherent Light-Electron Interaction in a Scanning Electron Microscope. PHYSICAL REVIEW LETTERS 2022; 128:235301. [PMID: 35749196 DOI: 10.1103/physrevlett.128.235301] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/10/2021] [Revised: 01/21/2022] [Accepted: 03/29/2022] [Indexed: 06/15/2023]
Abstract
The last two decades experimentally affirmed the quantum nature of free electron wave packets by the rapid development of transmission electron microscopes into ultrafast, quantum-coherent systems. So far, all experiments were restricted to the bounds of transmission electron microscopes enabling one or two photon-electron interaction sites. We show the quantum coherent coupling between electrons and light in a scanning electron microscope, at unprecedentedly low, subrelativistic energies down to 10.4 keV. These microscopes not only afford the yet-unexplored energies from ∼0.5 to 30 keV providing the optimum electron-light coupling efficiency, but also offer spacious and easily configurable experimental chambers for extended, cascaded optical set ups, potentially boasting thousands of photon-electron interaction sites. Our results make possible experiments in electron wave packet shaping, quantum computing, and spectral imaging with low-energy electrons.
Collapse
Affiliation(s)
- R Shiloh
- Physics Department, Friedrich-Alexander-Universität Erlangen-Nürnberg (FAU), Staudtstraße 1, 91058 Erlangen, Germany
| | - T Chlouba
- Physics Department, Friedrich-Alexander-Universität Erlangen-Nürnberg (FAU), Staudtstraße 1, 91058 Erlangen, Germany
| | - P Hommelhoff
- Physics Department, Friedrich-Alexander-Universität Erlangen-Nürnberg (FAU), Staudtstraße 1, 91058 Erlangen, Germany
| |
Collapse
|
15
|
Stroboscopic ultrafast imaging using RF strip-lines in a commercial transmission electron microscope. Ultramicroscopy 2022; 235:113497. [DOI: 10.1016/j.ultramic.2022.113497] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/21/2021] [Revised: 02/09/2022] [Accepted: 02/15/2022] [Indexed: 11/18/2022]
|
16
|
Gnanasekaran K, Korpanty J, Berger O, Hampu N, Halperin-Sternfeld M, Cohen-Gerassi D, Adler-Abramovich L, Gianneschi NC. Dipeptide Nanostructure Assembly and Dynamics via in Situ Liquid-Phase Electron Microscopy. ACS NANO 2021; 15:16542-16551. [PMID: 34623126 PMCID: PMC9836046 DOI: 10.1021/acsnano.1c06130] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/01/2023]
Abstract
In this paper, we report the in situ growth of FF nanotubes examined via liquid-cell transmission electron microscopy (LCTEM). This direct, high spatial, and temporal resolution imaging approach allowed us to observe the growth of peptide-based nanofibrillar structures through directional elongation. Furthermore, the radial growth profile of FF nanotubes through the addition of monomers perpendicular to the tube axis has been observed in real-time with sufficient resolution to directly observe the increase in diameter. Our study demonstrates that the kinetics, dynamics, structure formation, and assembly mechanism of these supramolecular assemblies can be directly monitored using LCTEM. The performance of the peptides and the assemblies they form can be verified and evaluated using post-mortem techniques including time-of-flight secondary ion mass spectrometry (ToF-SIMS).
Collapse
Affiliation(s)
- Karthikeyan Gnanasekaran
- Department of Chemistry, International Institute for Nanotechnology, Simpson Querrey Institute, Chemistry of Life Processes Institute, Northwestern University, Evanston, Illinois 60208, United States
- Department of Materials Science & Engineering, Department of Biomedical Engineering, Department of Pharmacology, Northwestern University, Evanston, Illinois 60208, United States
| | - Joanna Korpanty
- Department of Chemistry, International Institute for Nanotechnology, Simpson Querrey Institute, Chemistry of Life Processes Institute, Northwestern University, Evanston, Illinois 60208, United States
| | - Or Berger
- Department of Chemistry, International Institute for Nanotechnology, Simpson Querrey Institute, Chemistry of Life Processes Institute, Northwestern University, Evanston, Illinois 60208, United States
- Department of Materials Science & Engineering, Department of Biomedical Engineering, Department of Pharmacology, Northwestern University, Evanston, Illinois 60208, United States
| | - Nicholas Hampu
- Department of Chemistry, International Institute for Nanotechnology, Simpson Querrey Institute, Chemistry of Life Processes Institute, Northwestern University, Evanston, Illinois 60208, United States
- Department of Materials Science & Engineering, Department of Biomedical Engineering, Department of Pharmacology, Northwestern University, Evanston, Illinois 60208, United States
| | - Michal Halperin-Sternfeld
- Department of Oral Biology, The Goldschleger School of Dental Medicine, Sackler Faculty of Medicine, Tel Aviv University, Tel Aviv 6997801, Israel
- The Center for Nanoscience and Nanotechnology, Tel Aviv University, Tel Aviv 6997801, Israel
| | - Dana Cohen-Gerassi
- Department of Oral Biology, The Goldschleger School of Dental Medicine, Sackler Faculty of Medicine, Tel Aviv University, Tel Aviv 6997801, Israel
- The Center for Nanoscience and Nanotechnology, Tel Aviv University, Tel Aviv 6997801, Israel
- Department of Materials Science and Engineering, Iby and Aladar Fleischman Faculty of Engineering, Tel Aviv University, Tel Aviv 6997801, Israel
| | - Lihi Adler-Abramovich
- Department of Oral Biology, The Goldschleger School of Dental Medicine, Sackler Faculty of Medicine, Tel Aviv University, Tel Aviv 6997801, Israel
- The Center for Nanoscience and Nanotechnology, Tel Aviv University, Tel Aviv 6997801, Israel
| | - Nathan C Gianneschi
- Department of Chemistry, International Institute for Nanotechnology, Simpson Querrey Institute, Chemistry of Life Processes Institute, Northwestern University, Evanston, Illinois 60208, United States
- Department of Materials Science & Engineering, Department of Biomedical Engineering, Department of Pharmacology, Northwestern University, Evanston, Illinois 60208, United States
| |
Collapse
|
17
|
Rizvi A, Mulvey JT, Carpenter BP, Talosig R, Patterson JP. A Close Look at Molecular Self-Assembly with the Transmission Electron Microscope. Chem Rev 2021; 121:14232-14280. [PMID: 34329552 DOI: 10.1021/acs.chemrev.1c00189] [Citation(s) in RCA: 24] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/08/2023]
Abstract
Molecular self-assembly is pervasive in the formation of living and synthetic materials. Knowledge gained from research into the principles of molecular self-assembly drives innovation in the biological, chemical, and materials sciences. Self-assembly processes span a wide range of temporal and spatial domains and are often unintuitive and complex. Studying such complex processes requires an arsenal of analytical and computational tools. Within this arsenal, the transmission electron microscope stands out for its unique ability to visualize and quantify self-assembly structures and processes. This review describes the contribution that the transmission electron microscope has made to the field of molecular self-assembly. An emphasis is placed on which TEM methods are applicable to different structures and processes and how TEM can be used in combination with other experimental or computational methods. Finally, we provide an outlook on the current challenges to, and opportunities for, increasing the impact that the transmission electron microscope can have on molecular self-assembly.
Collapse
Affiliation(s)
- Aoon Rizvi
- Department of Chemistry, University of California, Irvine, Irvine, California 92697-2025, United States
| | - Justin T Mulvey
- Department of Materials Science and Engineering, University of California, Irvine, Irvine, California 92697-2025, United States
| | - Brooke P Carpenter
- Department of Chemistry, University of California, Irvine, Irvine, California 92697-2025, United States
| | - Rain Talosig
- Department of Chemistry, University of California, Irvine, Irvine, California 92697-2025, United States
| | - Joseph P Patterson
- Department of Chemistry, University of California, Irvine, Irvine, California 92697-2025, United States
| |
Collapse
|
18
|
Ferrer Orri J, Tennyson EM, Kusch G, Divitini G, Macpherson S, Oliver RA, Ducati C, Stranks SD. Using pulsed mode scanning electron microscopy for cathodoluminescence studies on hybrid perovskite films. NANO EXPRESS 2021. [DOI: 10.1088/2632-959x/abfe3c] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Abstract
Abstract
The use of pulsed mode scanning electron microscopy cathodoluminescence (CL) for both hyperspectral mapping and time-resolved measurements is found to be useful for the study of hybrid perovskite films, a class of ionic semiconductors that have been shown to be beam sensitive. A range of acquisition parameters is analysed, including beam current and beam mode (either continuous or pulsed operation), and their effect on the CL emission is discussed. Under optimized acquisition conditions, using a pulsed electron beam, the heterogeneity of the emission properties of hybrid perovskite films can be resolved via the acquisition of CL hyperspectral maps. These optimized parameters also enable the acquisition of time-resolved CL of polycrystalline films, showing significantly shorter lived charge carriers dynamics compared to the photoluminescence analogue, hinting at additional electron beam-specimen interactions to be further investigated. This work represents a promising step to investigate hybrid perovskite semiconductors at the nanoscale with CL.
Collapse
|
19
|
Leijten ZJWA, Wirix MJM, Lazar S, Verhoeven W, Luiten OJ, With G, Friedrich H. Nanoscale chemical analysis of beam‐sensitive polymeric materials by cryogenic electron microscopy. JOURNAL OF POLYMER SCIENCE 2021. [DOI: 10.1002/pol.20210012] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Affiliation(s)
- Zino J. W. A. Leijten
- Laboratory of Physical Chemistry, Department of Chemical Engineering and Chemistry Eindhoven University of Technology Eindhoven The Netherlands
- Center for Multiscale Electron Microscopy, Department of Chemical Engineering and Chemistry Eindhoven University of Technology Eindhoven The Netherlands
- Institute for Complex Molecular Systems Eindhoven University of Technology Eindhoven The Netherlands
| | - Maarten J. M. Wirix
- Materials and Structural Analysis Thermo Fisher Scientific Eindhoven The Netherlands
| | - Sorin Lazar
- Materials and Structural Analysis Thermo Fisher Scientific Eindhoven The Netherlands
| | - Wouter Verhoeven
- Coherence and Quantum Technology group, Department of Applied Physics Eindhoven University of Technology Eindhoven The Netherlands
| | - O. Jom Luiten
- Institute for Complex Molecular Systems Eindhoven University of Technology Eindhoven The Netherlands
- Coherence and Quantum Technology group, Department of Applied Physics Eindhoven University of Technology Eindhoven The Netherlands
| | - Gijsbertus With
- Laboratory of Physical Chemistry, Department of Chemical Engineering and Chemistry Eindhoven University of Technology Eindhoven The Netherlands
- Center for Multiscale Electron Microscopy, Department of Chemical Engineering and Chemistry Eindhoven University of Technology Eindhoven The Netherlands
| | - Heiner Friedrich
- Laboratory of Physical Chemistry, Department of Chemical Engineering and Chemistry Eindhoven University of Technology Eindhoven The Netherlands
- Center for Multiscale Electron Microscopy, Department of Chemical Engineering and Chemistry Eindhoven University of Technology Eindhoven The Netherlands
- Institute for Complex Molecular Systems Eindhoven University of Technology Eindhoven The Netherlands
| |
Collapse
|
20
|
VandenBussche E, Clark CP, Holmes RJ, Flannigan DJ. Mitigating Damage to Hybrid Perovskites Using Pulsed-Beam TEM. ACS OMEGA 2020; 5:31867-31871. [PMID: 33344840 PMCID: PMC7745440 DOI: 10.1021/acsomega.0c04711] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/24/2020] [Accepted: 10/28/2020] [Indexed: 06/12/2023]
Abstract
Using a pulsed-beam transmission electron microscope, we discover a reduction in damage to methylammonium lead iodide (MAPbI3) as compared to conventional beams delivered at the same dose rates. For rates as low as 0.001 e·Å-2·s-1, we find up to a 17% reduction in damage at a total dose of 10 e·Å-2. We systematically study the effects of number of electrons in each pulse and the duration between pulse arrival. Damage increases for both, though the number of electrons per pulse has a larger effect. A crossover is identified, where a pulsed beam causes more damage than a conventional one. Although qualitatively similar to previous findings, the degree to which damage is reduced in MAPbI3 is less than that observed for other materials (e.g., C36H74), supporting the hypothesis that the effects are material- and damage-mechanism-dependent. Despite this, the observation here of damage reduction for relatively large electron packets (up to 200 electrons per pulse) suggests that MAPbI3 is in fact less susceptible to irradiation than C36H74, which may be related to reported self-healing effects. This work provides insights into damage processes and durability in hybrid perovskites and also illustrates the viability of using pulsed-beam TEM to explore the associated molecular-level routes to degradation, analogous to laser-accelerated energetic pulsed electron beams and the study of damage to biomolecules, cells, and tissues in radiobiology.
Collapse
Affiliation(s)
- Elisah
J. VandenBussche
- Department of Chemical Engineering
and Materials Science, University of Minnesota, 421 Washington Avenue SE, Minneapolis, Minnesota 55455, United States
| | - Catherine P. Clark
- Department of Chemical Engineering
and Materials Science, University of Minnesota, 421 Washington Avenue SE, Minneapolis, Minnesota 55455, United States
| | - Russell J. Holmes
- Department of Chemical Engineering
and Materials Science, University of Minnesota, 421 Washington Avenue SE, Minneapolis, Minnesota 55455, United States
| | - David J. Flannigan
- Department of Chemical Engineering
and Materials Science, University of Minnesota, 421 Washington Avenue SE, Minneapolis, Minnesota 55455, United States
| |
Collapse
|
21
|
Ilett M, S'ari M, Freeman H, Aslam Z, Koniuch N, Afzali M, Cattle J, Hooley R, Roncal-Herrero T, Collins SM, Hondow N, Brown A, Brydson R. Analysis of complex, beam-sensitive materials by transmission electron microscopy and associated techniques. PHILOSOPHICAL TRANSACTIONS. SERIES A, MATHEMATICAL, PHYSICAL, AND ENGINEERING SCIENCES 2020; 378:20190601. [PMID: 33100161 PMCID: PMC7661278 DOI: 10.1098/rsta.2019.0601] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Accepted: 06/12/2020] [Indexed: 06/11/2023]
Abstract
We review the use of transmission electron microscopy (TEM) and associated techniques for the analysis of beam-sensitive materials and complex, multiphase systems in-situ or close to their native state. We focus on materials prone to damage by radiolysis and explain that this process cannot be eliminated or switched off, requiring TEM analysis to be done within a dose budget to achieve an optimum dose-limited resolution. We highlight the importance of determining the damage sensitivity of a particular system in terms of characteristic changes that occur on irradiation under both an electron fluence and flux by presenting results from a series of molecular crystals. We discuss the choice of electron beam accelerating voltage and detectors for optimizing resolution and outline the different strategies employed for low-dose microscopy in relation to the damage processes in operation. In particular, we discuss the use of scanning TEM (STEM) techniques for maximizing information content from high-resolution imaging and spectroscopy of minerals and molecular crystals. We suggest how this understanding can then be carried forward for in-situ analysis of samples interacting with liquids and gases, provided any electron beam-induced alteration of a specimen is controlled or used to drive a chosen reaction. Finally, we demonstrate that cryo-TEM of nanoparticle samples snap-frozen in vitreous ice can play a significant role in benchmarking dynamic processes at higher resolution. This article is part of a discussion meeting issue 'Dynamic in situ microscopy relating structure and function'.
Collapse
Affiliation(s)
| | | | | | | | | | | | | | | | | | | | | | | | - Rik Brydson
- Leeds Electron Microscopy and Spectroscopy (LEMAS) Centre, School of Chemical and Process Engineering, Bragg Centre for Materials Research, University of Leeds, Leeds LS2 9JT, UK
| |
Collapse
|
22
|
VandenBussche EJ, Flannigan DJ. High-resolution analogue of time-domain phonon spectroscopy in the transmission electron microscope. PHILOSOPHICAL TRANSACTIONS. SERIES A, MATHEMATICAL, PHYSICAL, AND ENGINEERING SCIENCES 2020; 378:20190598. [PMID: 33100160 PMCID: PMC7661281 DOI: 10.1098/rsta.2019.0598] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Accepted: 05/31/2020] [Indexed: 06/11/2023]
Abstract
Femtosecond photoexcitation of semiconducting materials leads to the generation of coherent acoustic phonons (CAPs), the behaviours of which are linked to intrinsic and engineered electronic, optical and structural properties. While often studied with pump-probe spectroscopic techniques, the influence of nanoscale structure and morphology on CAP dynamics can be challenging to resolve with these all-optical methods. Here, we used ultrafast electron microscopy (UEM) to resolve variations in CAP dynamics caused by differences in the degree of crystallinity in as-prepared and annealed GaAs lamellae. Following in situ femtosecond photoexcitation, we directly imaged the generation and propagation dynamics of hypersonic CAPs in a mostly amorphous and, following an in situ photothermal anneal, a mostly crystalline lamella. Subtle differences in both the initial hypersonic velocities and the asymptotic relaxation behaviours were resolved via construction of space-time contour plots from phonon wavefronts. Comparison to bulk sound velocities in crystalline and amorphous GaAs reveals the influence of the mixed amorphous-crystalline morphology on CAP dispersion behaviours. Further, an increase in the asymptotic velocity following annealing establishes the sensitivity of quantitative UEM imaging to both structural and compositional variations through differences in bonding and elasticity. Implications of extending the methods and results reported here to elucidating correlated electronic, optical and structural behaviours in semiconducting materials are discussed. This article is part of a discussion meeting issue 'Dynamic in situ microscopy relating structure and function'.
Collapse
|
23
|
Han Z, Porter AE. In situ Electron Microscopy of Complex Biological and Nanoscale Systems: Challenges and Opportunities. FRONTIERS IN NANOTECHNOLOGY 2020. [DOI: 10.3389/fnano.2020.606253] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022] Open
Abstract
In situ imaging for direct visualization is important for physical and biological sciences. Research endeavors into elucidating dynamic biological and nanoscale phenomena frequently necessitate in situ and time-resolved imaging. In situ liquid cell electron microscopy (LC-EM) can overcome certain limitations of conventional electron microscopies and offer great promise. This review aims to examine the status-quo and practical challenges of in situ LC-EM and its applications, and to offer insights into a novel correlative technique termed microfluidic liquid cell electron microscopy. We conclude by suggesting a few research ideas adopting microfluidic LC-EM for in situ imaging of biological and nanoscale systems.
Collapse
|
24
|
Coherent interaction between free electrons and a photonic cavity. Nature 2020; 582:50-54. [PMID: 32494081 DOI: 10.1038/s41586-020-2321-x] [Citation(s) in RCA: 72] [Impact Index Per Article: 14.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/26/2019] [Accepted: 03/17/2020] [Indexed: 11/08/2022]
Abstract
Advances in the research of interactions between ultrafast free electrons and light have introduced a previously unknown kind of quantum matter, quantum free-electron wavepackets1-5. So far, studies of the interactions of cavity-confined light with quantum matter have focused on bound electron systems, such as atoms, quantum dots and quantum circuits, which are considerably limited by their fixed energy states, spectral range and selection rules. By contrast, quantum free-electron wavepackets have no such limits, but so far no experiment has shown the influence of a photonic cavity on quantum free-electron wavepackets. Here we develop a platform for multidimensional nanoscale imaging and spectroscopy of free-electron interactions with photonic cavities. We directly measure the cavity-photon lifetime via a coherent free-electron probe and observe an enhancement of more than an order of magnitude in the interaction strength relative to previous experiments of electron-photon interactions. Our free-electron probe resolves the spatiotemporal and energy-momentum information of the interaction. The quantum nature of the electrons is verified by spatially mapping Rabi oscillations of the electron spectrum. The interactions between free electrons and cavity photons could enable low-dose, ultrafast electron microscopy of soft matter or other beam-sensitive materials. Such interactions may also open paths towards using free electrons for quantum information processing and quantum sensing. Future studies could achieve free-electron strong coupling6,7, photon quantum state synthesis8 and quantum nonlinear phenomena such as cavity electro-optomechanics9.
Collapse
|
25
|
Wu H, Friedrich H, Patterson JP, Sommerdijk NAJM, de Jonge N. Liquid-Phase Electron Microscopy for Soft Matter Science and Biology. ADVANCED MATERIALS (DEERFIELD BEACH, FLA.) 2020; 32:e2001582. [PMID: 32419161 DOI: 10.1002/adma.202001582] [Citation(s) in RCA: 25] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/05/2020] [Revised: 04/05/2020] [Accepted: 04/06/2020] [Indexed: 05/20/2023]
Abstract
Innovations in liquid-phase electron microscopy (LP-EM) have made it possible to perform experiments at the optimized conditions needed to examine soft matter. The main obstacle is conducting experiments in such a way that electron beam radiation can be used to obtain answers for scientific questions without changing the structure and (bio)chemical processes in the sample due to the influence of the radiation. By overcoming these experimental difficulties at least partially, LP-EM has evolved into a new microscopy method with nanometer spatial resolution and sub-second temporal resolution for analysis of soft matter in materials science and biology. Both experimental design and applications of LP-EM for soft matter materials science and biological research are reviewed, and a perspective of possible future directions is given.
Collapse
Affiliation(s)
- Hanglong Wu
- Department of Chemical Engineering and Chemistry, Eindhoven University of Technology, Eindhoven, 5600 MB, The Netherlands
| | - Heiner Friedrich
- Department of Chemical Engineering and Chemistry, Eindhoven University of Technology, Eindhoven, 5600 MB, The Netherlands
- Institute for Complex Molecular Systems, Eindhoven University of Technology, Eindhoven, 5600 MB, The Netherlands
| | - Joseph P Patterson
- Department of Chemistry, University of California, Irvine, CA, 92697, USA
| | - Nico A J M Sommerdijk
- Department of Biochemistry, Radboud University Medical Center, Nijmegen, 6500 HB, The Netherlands
| | - Niels de Jonge
- INM - Leibniz Institute for New Materials, Saarbrücken, 66123, Germany
- Department of Physics, Saarland University, Saarbrücken, 66123, Germany
| |
Collapse
|
26
|
Candanedo J, Caleman C, Tîmneanu N, Beckstein O, Spence JCH. Dynamics of rare gas solids irradiated by electron beams. J Chem Phys 2020; 152:144303. [DOI: 10.1063/1.5134801] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- J. Candanedo
- Department of Physics, Arizona State University, Tempe, Arizona 85282, USA
| | - C. Caleman
- Department of Physics and Astronomy, Uppsala University, Uppsala SE-75120, Sweden
- Center for Free-Electron Laser Science, Deutsches Elektronen-Synchrotron, Notkestraße 85, Hamburg, Germany
| | - N. Tîmneanu
- Department of Physics and Astronomy, Uppsala University, Uppsala SE-75120, Sweden
| | - O. Beckstein
- Department of Physics, Arizona State University, Tempe, Arizona 85282, USA
- Center for Biological Physics, Arizona State University, Tempe, Arizona 85282, USA
| | - J. C. H. Spence
- Department of Physics, Arizona State University, Tempe, Arizona 85282, USA
| |
Collapse
|
27
|
Chen Q, Dwyer C, Sheng G, Zhu C, Li X, Zheng C, Zhu Y. Imaging Beam-Sensitive Materials by Electron Microscopy. ADVANCED MATERIALS (DEERFIELD BEACH, FLA.) 2020; 32:e1907619. [PMID: 32108394 DOI: 10.1002/adma.201907619] [Citation(s) in RCA: 82] [Impact Index Per Article: 16.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/20/2019] [Revised: 12/20/2019] [Indexed: 05/15/2023]
Abstract
Electron microscopy allows the extraction of multidimensional spatiotemporally correlated structural information of diverse materials down to atomic resolution, which is essential for figuring out their structure-property relationships. Unfortunately, the high-energy electrons that carry this important information can cause damage by modulating the structures of the materials. This has become a significant problem concerning the recent boost in materials science applications of a wide range of beam-sensitive materials, including metal-organic frameworks, covalent-organic frameworks, organic-inorganic hybrid materials, 2D materials, and zeolites. To this end, developing electron microscopy techniques that minimize the electron beam damage for the extraction of intrinsic structural information turns out to be a compelling but challenging need. This article provides a comprehensive review on the revolutionary strategies toward the electron microscopic imaging of beam-sensitive materials and associated materials science discoveries, based on the principles of electron-matter interaction and mechanisms of electron beam damage. Finally, perspectives and future trends in this field are put forward.
Collapse
Affiliation(s)
- Qiaoli Chen
- Center for Electron Microscopy, State Key Laboratory Breeding Base of Green Chemistry Synthesis Technology and College of Chemical Engineering, Zhejiang University of Technology, Hangzhou, 310014, China
| | - Christian Dwyer
- Department of Physics, Arizona State University, Tempe, AZ, 85287-1504, USA
| | - Guan Sheng
- Advanced Membranes and Porous Materials Center, Physical Science and Engineering, King Abdullah University of Science and Technology, Thuwal, 23955-6900, Kingdom of Saudi Arabia
| | - Chongzhi Zhu
- Center for Electron Microscopy, State Key Laboratory Breeding Base of Green Chemistry Synthesis Technology and College of Chemical Engineering, Zhejiang University of Technology, Hangzhou, 310014, China
| | - Xiaonian Li
- Center for Electron Microscopy, State Key Laboratory Breeding Base of Green Chemistry Synthesis Technology and College of Chemical Engineering, Zhejiang University of Technology, Hangzhou, 310014, China
| | - Changlin Zheng
- State Key Laboratory of Surface Physics and Department of Physics, Fudan University, Shanghai, 200438, China
| | - Yihan Zhu
- Center for Electron Microscopy, State Key Laboratory Breeding Base of Green Chemistry Synthesis Technology and College of Chemical Engineering, Zhejiang University of Technology, Hangzhou, 310014, China
| |
Collapse
|
28
|
Zhao J, Bakr OM, Mohammed OF. Ultrafast electron imaging of surface charge carrier dynamics at low voltage. STRUCTURAL DYNAMICS (MELVILLE, N.Y.) 2020; 7:021001. [PMID: 32266302 PMCID: PMC7105398 DOI: 10.1063/4.0000007] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 02/07/2020] [Accepted: 03/10/2020] [Indexed: 06/11/2023]
Abstract
The performance of optoelectronic devices strongly depends on charge carrier dynamics on top of surfaces of the absorber layers. Unfortunately, this information cannot be selectively probed using conventional ultrafast laser spectroscopic methods, due to the large penetration depth (tens of nm to μm) of the photon pulses in the pump-probe configurations. Therefore, ultrafast time-resolved approaches that can directly and selectively visualize the behavior of the surface carrier dynamics are urgently needed. Here, we introduce a novel methodology of low-voltage scanning ultrafast electron microscopy that can take ultrafast time-resolved images (snapshots) of the surface of materials at the sub-nanometer level. By this approach, the surface of the photoactive materials is optically excited and imaged, using a pulsed low-voltage electron beam (1 keV) that interacts with the surface to generate secondary electrons with an energy of a few eV, and that are emitted only from the top surface of materials, providing direct information about the carrier dynamics and the localization of electron/holes in real space and time. An outlook on the potential applications of this low voltage approach in different disciplines will also be discussed.
Collapse
Affiliation(s)
- Jianfeng Zhao
- Division of Physical Science and Engineering, King Abdullah University of Science and Technology, Thuwal 23955-6900, Saudi Arabia
| | - Osman M Bakr
- Division of Physical Science and Engineering, King Abdullah University of Science and Technology, Thuwal 23955-6900, Saudi Arabia
| | - Omar F Mohammed
- Division of Physical Science and Engineering, King Abdullah University of Science and Technology, Thuwal 23955-6900, Saudi Arabia
| |
Collapse
|
29
|
Lau JW, Schliep KB, Katz MB, Gokhale VJ, Gorman JJ, Jing C, Liu A, Zhao Y, Montgomery E, Choe H, Rush W, Kanareykin A, Fu X, Zhu Y. Laser-free GHz stroboscopic transmission electron microscope: Components, system integration, and practical considerations for pump-probe measurements. THE REVIEW OF SCIENTIFIC INSTRUMENTS 2020; 91:021301. [PMID: 32113442 PMCID: PMC11210549 DOI: 10.1063/1.5131758] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/15/2019] [Accepted: 02/01/2020] [Indexed: 06/10/2023]
Abstract
A 300 keV transmission electron microscope was modified to produce broadband pulsed beams that can be, in principle, between 40 MHz and 12 GHz, corresponding to temporal resolution in the nanosecond to picosecond range without an excitation laser. The key enabling technology is a pair of phase-matched modulating and de-modulating traveling wave metallic comb striplines (pulsers). An initial temporal resolution of 30 ps was achieved with a strobe frequency of 6.0 GHz. The placement of the pulsers, mounted immediately below the gun, allows for preservation of all optical configurations, otherwise available to the unmodified instrument, and therefore makes such a post-modified instrument for dual-use, i.e., both pulsed-beam mode (i.e., stroboscopic time-resolved) and conventional continuous waveform mode. In this article, we describe the elements inserted into the beam path, challenges encountered during integration with an in-service microscope, and early results from an electric-field-driven pump-probe experiment. We conclude with ideas for making this class of instruments broadly applicable for examining cyclical and repeatable phenomena.
Collapse
Affiliation(s)
- June W. Lau
- Materials Science and Engineering Division, National Institute of Standards and Technology, Gaithersburg, Maryland 20899, USA
| | - Karl B. Schliep
- Materials Science and Engineering Division, National Institute of Standards and Technology, Gaithersburg, Maryland 20899, USA
| | - Michael B. Katz
- Materials Science and Engineering Division, National Institute of Standards and Technology, Gaithersburg, Maryland 20899, USA
| | - Vikrant J. Gokhale
- Microsystems and Nanotechnology Division, National Institute of Standards and Technology, Gaithersburg, Maryland 20899, USA
| | - Jason J. Gorman
- Microsystems and Nanotechnology Division, National Institute of Standards and Technology, Gaithersburg, Maryland 20899, USA
| | - Chunguang Jing
- Euclid Techlabs, LLC, 365 Remington Blvd., Bolingbrook, Illinois 60440, USA
| | - Ao Liu
- Euclid Techlabs, LLC, 365 Remington Blvd., Bolingbrook, Illinois 60440, USA
| | - Yubin Zhao
- Euclid Techlabs, LLC, 365 Remington Blvd., Bolingbrook, Illinois 60440, USA
| | - Eric Montgomery
- Euclid Techlabs, LLC, 365 Remington Blvd., Bolingbrook, Illinois 60440, USA
| | - Hyeokmin Choe
- Euclid Techlabs, LLC, 365 Remington Blvd., Bolingbrook, Illinois 60440, USA
| | - Wade Rush
- Euclid Techlabs, LLC, 365 Remington Blvd., Bolingbrook, Illinois 60440, USA
| | - Alexei Kanareykin
- Euclid Techlabs, LLC, 365 Remington Blvd., Bolingbrook, Illinois 60440, USA
| | - Xuewen Fu
- Department of Condensed Matter Physics and Materials Science, Brookhaven National Laboratory, Upton, New York 11973, USA
| | - Yimei Zhu
- Department of Condensed Matter Physics and Materials Science, Brookhaven National Laboratory, Upton, New York 11973, USA
| |
Collapse
|
30
|
Yang X, Li J, Fedurin M, Smaluk V, Yu L, Wu L, Wan W, Zhu Y, Shaftan T. A novel nondestructive diagnostic method for mega-electron-volt ultrafast electron diffraction. Sci Rep 2019; 9:17223. [PMID: 31748616 PMCID: PMC6868275 DOI: 10.1038/s41598-019-53824-9] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/03/2019] [Accepted: 11/05/2019] [Indexed: 11/09/2022] Open
Abstract
A real-time, nondestructive, Bragg-diffracted electron beam energy, energy-spread and spatial-pointing jitter monitor is experimentally verified by encoding the electron beam energy and spatial-pointing jitter information into the mega-electron-volt ultrafast electron diffraction pattern. The shot-to-shot fluctuation of the diffraction pattern is then decomposed to two basic modes, i.e., the distance between the Bragg peaks as well as its variation (radial mode) and the overall lateral shift of the whole pattern (drift mode). Since these two modes are completely decoupled, the Bragg-diffraction method can simultaneously measure the shot-to-shot energy fluctuation from the radial mode with 2·10−4 precision and spatial-pointing jitter from the drift mode having wide measurement span covering energy jitter range from 10−4 to 10−1. The key advantage of this method is that it allows us to extract the electron beam energy spread concurrently with the ongoing experiment and enables online optimization of the electron beam especially for future high charge single-shot ultrafast electron diffraction (UED) and ultrafast electron microscopy (UEM) experiments. Furthermore, real-time energy measurement enables the filtering process to remove off-energy shots, improving the resolution of time-resolved UED. As a result, this method can be applied to the entire UED user community, beyond the traditional electron beam diagnostics of accelerators used by accelerator physicists.
Collapse
Affiliation(s)
- Xi Yang
- Brookhaven National Laboratory, Upton, NY, 11973, USA.
| | - Junjie Li
- Brookhaven National Laboratory, Upton, NY, 11973, USA
| | | | - Victor Smaluk
- Brookhaven National Laboratory, Upton, NY, 11973, USA
| | - Lihua Yu
- Brookhaven National Laboratory, Upton, NY, 11973, USA
| | - Lijun Wu
- Brookhaven National Laboratory, Upton, NY, 11973, USA
| | - Weishi Wan
- ShanghaiTech University, Shanghai, China
| | - Yimei Zhu
- Brookhaven National Laboratory, Upton, NY, 11973, USA
| | - Timur Shaftan
- Brookhaven National Laboratory, Upton, NY, 11973, USA
| |
Collapse
|