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For: Licht SS, Lawrence CC, Stubbe J. Thermodynamic and kinetic studies on carbon-cobalt bond homolysis by ribonucleoside triphosphate reductase: the importance of entropy in catalysis. Biochemistry 1999;38:1234-42. [PMID: 9930983 DOI: 10.1021/bi981886a] [Citation(s) in RCA: 49] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/17/2022]
Number Cited by Other Article(s)
1
Wu Q, Cao C, Wei S, He H, Chen K, Su L, Liu Q, Li S, Lai Y, Li J. Decreasing hydrophobicity or shielding hydrophobic areas of CH2 attenuates low pH-induced IgG4 aggregation. Front Bioeng Biotechnol 2023;11:1257665. [PMID: 37711444 PMCID: PMC10497874 DOI: 10.3389/fbioe.2023.1257665] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/12/2023] [Accepted: 08/18/2023] [Indexed: 09/16/2023]  Open
2
Marques HM. The inorganic chemistry of the cobalt corrinoids - an update. J Inorg Biochem 2023;242:112154. [PMID: 36871417 DOI: 10.1016/j.jinorgbio.2023.112154] [Citation(s) in RCA: 8] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/07/2023] [Revised: 01/23/2023] [Accepted: 01/26/2023] [Indexed: 02/05/2023]
3
Fatima S, Boggs DG, Ali N, Thompson PJ, Thielges MC, Bridwell-Rabb J, Olshansky L. Engineering a Conformationally Switchable Artificial Metalloprotein. J Am Chem Soc 2022;144:21606-21616. [DOI: 10.1021/jacs.2c08885] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
4
Mamun AA, Toda MJ, Lodowski P, Kozlowski PM. Photolytic Cleavage of Co–C Bond in Coenzyme B12-Dependent Glutamate Mutase. J Phys Chem B 2019;123:2585-2598. [DOI: 10.1021/acs.jpcb.8b07547] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
5
Mamun AA, Toda MJ, Lodowski P, Jaworska M, Kozlowski PM. Mechanism of Light Induced Radical Pair Formation in Coenzyme B12-Dependent Ethanolamine Ammonia-Lyase. ACS Catal 2018. [DOI: 10.1021/acscatal.8b00120] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/08/2023]
6
Wang M, Zhu C, Kohne M, Warncke K. Resolution and Characterization of Chemical Steps in Enzyme Catalytic Sequences by Using Low-Temperature and Time-Resolved, Full-Spectrum EPR Spectroscopy in Fluid Cryosolvent and Frozen Solution Systems. Methods Enzymol 2015;563:59-94. [PMID: 26478482 PMCID: PMC6186429 DOI: 10.1016/bs.mie.2015.08.015] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
7
The entropic contributions in vitamin B12 enzymes still reflect the electrostatic paradigm. Proc Natl Acad Sci U S A 2015;112:4328-33. [PMID: 25805820 DOI: 10.1073/pnas.1503828112] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]  Open
8
Kepp KP. Co-C dissociation of adenosylcobalamin (coenzyme B12): role of dispersion, induction effects, solvent polarity, and relativistic and thermal corrections. J Phys Chem A 2014;118:7104-17. [PMID: 25116644 DOI: 10.1021/jp503607k] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
9
Syrén PO, Hammer SC, Claasen B, Hauer B. Entropy is Key to the Formation of Pentacyclic Terpenoids by Enzyme-Catalyzed Polycyclization. Angew Chem Int Ed Engl 2014;53:4845-9. [DOI: 10.1002/anie.201402087] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/04/2014] [Revised: 02/21/2014] [Indexed: 01/13/2023]
10
Syrén PO, Hammer SC, Claasen B, Hauer B. Entropy is Key to the Formation of Pentacyclic Terpenoids by Enzyme-Catalyzed Polycyclization. Angew Chem Int Ed Engl 2014. [DOI: 10.1002/ange.201402087] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
11
Photolytic cleavage of Co–C bond: A mechanistic study for the formation of solvent coordinated cobalt(II) complex. J Organomet Chem 2014. [DOI: 10.1016/j.jorganchem.2013.09.010] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
12
Wang M, Warncke K. Entropic origin of cobalt-carbon bond cleavage catalysis in adenosylcobalamin-dependent ethanolamine ammonia-lyase. J Am Chem Soc 2013;135:15077-84. [PMID: 24028405 PMCID: PMC3839591 DOI: 10.1021/ja404467d] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
13
Adenosylcobalamin enzymes: theory and experiment begin to converge. BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS 2012;1824:1154-64. [PMID: 22516318 DOI: 10.1016/j.bbapap.2012.03.012] [Citation(s) in RCA: 45] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/01/2011] [Revised: 02/04/2012] [Accepted: 03/27/2012] [Indexed: 11/21/2022]
14
Larsson KM, Logan DT, Nordlund P. Structural basis for adenosylcobalamin activation in AdoCbl-dependent ribonucleotide reductases. ACS Chem Biol 2010;5:933-42. [PMID: 20672854 DOI: 10.1021/cb1000845] [Citation(s) in RCA: 38] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
15
Marsh ENG, Patterson DP, Li L. Adenosyl radical: reagent and catalyst in enzyme reactions. Chembiochem 2010;11:604-21. [PMID: 20191656 PMCID: PMC3011887 DOI: 10.1002/cbic.200900777] [Citation(s) in RCA: 88] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/21/2009] [Indexed: 12/17/2022]
16
Lohman GJS, Stubbe J. Inactivation of Lactobacillus leichmannii ribonucleotide reductase by 2',2'-difluoro-2'-deoxycytidine 5'-triphosphate: covalent modification. Biochemistry 2010;49:1404-17. [PMID: 20088569 PMCID: PMC2855214 DOI: 10.1021/bi902132u] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
17
Lohman GJS, Gerfen GJ, Stubbe J. Inactivation of Lactobacillus leichmannii ribonucleotide reductase by 2',2'-difluoro-2'-deoxycytidine 5'-triphosphate: adenosylcobalamin destruction and formation of a nucleotide-based radical. Biochemistry 2010;49:1396-403. [PMID: 20088568 PMCID: PMC2867335 DOI: 10.1021/bi9021318] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
18
Li X, Chung LW, Paneth P, Morokuma K. DFT and ONIOM(DFT:MM) studies on Co-C bond cleavage and hydrogen transfer in B12-dependent methylmalonyl-CoA mutase. Stepwise or concerted mechanism? J Am Chem Soc 2009;131:5115-25. [PMID: 19309090 DOI: 10.1021/ja807677z] [Citation(s) in RCA: 48] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
19
Morris AM, Watzky MA, Finke RG. Protein aggregation kinetics, mechanism, and curve-fitting: A review of the literature. BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS 2009;1794:375-97. [DOI: 10.1016/j.bbapap.2008.10.016] [Citation(s) in RCA: 507] [Impact Index Per Article: 33.8] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/06/2008] [Revised: 10/17/2008] [Accepted: 10/27/2008] [Indexed: 11/25/2022]
20
Yoon M, Kalli A, Lee HY, Håkansson K, Marsh ENG. Intrinsic deuterium kinetic isotope effects in glutamate mutase measured by an intramolecular competition experiment. Angew Chem Int Ed Engl 2008;46:8455-9. [PMID: 17910014 DOI: 10.1002/anie.200702448] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
21
Yoon M, Kalli A, Lee HY, Håkansson K, Marsh E. Intrinsic Deuterium Kinetic Isotope Effects in Glutamate Mutase Measured by an Intramolecular Competition Experiment. Angew Chem Int Ed Engl 2007. [DOI: 10.1002/ange.200702448] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
22
Marcus RA. H and other transfers in enzymes and in solution: theory and computations, a unified view. 2. Applications to experiment and computations. J Phys Chem B 2007;111:6643-54. [PMID: 17497918 DOI: 10.1021/jp071589s] [Citation(s) in RCA: 47] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
23
Cheng MC, Marsh ENG. Evidence for coupled motion and hydrogen tunneling of the reaction catalyzed by glutamate mutase. Biochemistry 2007;46:883-9. [PMID: 17223710 PMCID: PMC2518312 DOI: 10.1021/bi0616908] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
24
Siddiqui KS, Cavicchioli R. Cold-adapted enzymes. Annu Rev Biochem 2007;75:403-33. [PMID: 16756497 DOI: 10.1146/annurev.biochem.75.103004.142723] [Citation(s) in RCA: 546] [Impact Index Per Article: 32.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
25
Brown KL. The enzymatic activation of coenzyme B12. Dalton Trans 2006:1123-33. [PMID: 16482346 DOI: 10.1039/b517599m] [Citation(s) in RCA: 40] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
26
Brown KL. Chemistry and enzymology of vitamin B12. Chem Rev 2005;105:2075-149. [PMID: 15941210 DOI: 10.1021/cr030720z] [Citation(s) in RCA: 381] [Impact Index Per Article: 20.1] [Reference Citation Analysis] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
27
Atrans influence study in propyl (aquo)cobaloxime by imidazoles and amino acids. J CHEM SCI 2005. [DOI: 10.1007/bf02708442] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
28
Brown KL, Marques HM. Product stabilization in the enzymatic activation of coenzyme B12: a molecular modeling study. ACTA ACUST UNITED AC 2005. [DOI: 10.1016/j.theochem.2004.11.013] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
29
Brown KL, Zou X, Banka RR, Perry CB, Marques HM. Solution Structure and Thermolysis of Coβ-5‘-Deoxyadenosylimidazolylcobamide, a Coenzyme B12 Analogue with an Imidazole Axial Nucleoside. Inorg Chem 2004;43:8130-42. [PMID: 15578853 DOI: 10.1021/ic040079z] [Citation(s) in RCA: 16] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
30
Doll KM, Finke RG. Adenosylcobinamide Plus Exogenous, Sterically Hindered, Putative Axial Bases:  A Reinvestigation into the Cause of Record Levels of Co−C Heterolysis. Inorg Chem 2004;43:2611-23. [PMID: 15074980 DOI: 10.1021/ic030141c] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
31
Ge J, Yu G, Ator MA, Stubbe J. Pre-steady-state and steady-state kinetic analysis of E. coli class I ribonucleotide reductase. Biochemistry 2003;42:10071-83. [PMID: 12939135 DOI: 10.1021/bi034374r] [Citation(s) in RCA: 113] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
32
White WT, Finke RG. Synthesis of adenosylcobinamide 2-chlorophenyl phosphate, a zwitterionic cobinamide phosphate analog of adenosylcobalamin en route to crystallizable cobinamides. J Inorg Biochem 2002;91:371-87. [PMID: 12161307 DOI: 10.1016/s0162-0134(02)00402-6] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
33
Brown KL, Zou X, Li J, Chen G. Enzymatic activity of coenzyme B(12) derivatives with altered axial nucleotides: probing the mechanochemical triggering hypothesis in ribonucleotide reductase. Inorg Chem 2001;40:5942-7. [PMID: 11681909 DOI: 10.1021/ic010796i] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
34
Marsh EN, Drennan CL. Adenosylcobalamin-dependent isomerases: new insights into structure and mechanism. Curr Opin Chem Biol 2001;5:499-505. [PMID: 11578922 DOI: 10.1016/s1367-5931(00)00238-6] [Citation(s) in RCA: 79] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
35
Fontecave M, Pierre JL. Mechanisms of formation of free radicals in biological catalysis. ACTA ACUST UNITED AC 2001. [DOI: 10.1016/s1387-1609(01)01283-x] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/17/2022]
36
Huhta MS, Chen HP, Hemann C, Hille CR, Marsh EN. Protein-coenzyme interactions in adenosylcobalamin-dependent glutamate mutase. Biochem J 2001;355:131-7. [PMID: 11256957 PMCID: PMC1221720 DOI: 10.1042/0264-6021:3550131] [Citation(s) in RCA: 20] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
37
Marsh EN, Holloway DE. Adenosylcobalamin-dependent enzymes. Subcell Biochem 2001;35:351-403. [PMID: 11192728 DOI: 10.1007/0-306-46828-x_11] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]
38
Brown KL, Marques HM. Molecular modeling of the mechanochemical triggering mechanism for catalysis of carbon-cobalt bond homolysis in coenzyme B12. J Inorg Biochem 2001;83:121-32. [PMID: 11237251 DOI: 10.1016/s0162-0134(00)00188-4] [Citation(s) in RCA: 33] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
39
Sirovatka JM, Rappé AK, Finke RG. Molecular mechanics studies of coenzyme B12 complexes with constrained CoN(axial-base) bond lengths: introduction of the universal force field (UFF) to coenzyme B12 chemistry and its use to probe the plausibility of an axial-base-induced, ground-state corrin butterfly conformational steric effect. Inorganica Chim Acta 2000. [DOI: 10.1016/s0020-1693(00)00025-6] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
40
Sirovatka JM, Finke RG. Hydrogen abstraction from thiols by adenosyl radicals: chemical precedent for thiyl radical formation, the first catalytic step in ribonucleoside triphosphate reductase from Lactobacillus leichmannii. J Inorg Biochem 2000;78:149-60. [PMID: 10766338 DOI: 10.1016/s0162-0134(99)00224-x] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
41
Brown KL, Zou X. Thermolysis of coenzymes B12 at physiological temperatures: activation parameters for cobalt-carbon bond homolysis and a quantitative analysis of the perturbation of the homolysis equilibrium by the ribonucleoside triphosphate reductase from Lactobacillus leichmannii. J Inorg Biochem 1999;77:185-95. [PMID: 10643658 DOI: 10.1016/s0162-0134(99)00190-7] [Citation(s) in RCA: 35] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
42
Brasch NE, Hsu TL, Doll KM, Finke RG. Synthesis and characterization of isolable thiolatocobalamin complexes relevant to coenzyme B12-dependent ribonucleoside triphosphate reductase. J Inorg Biochem 1999;76:197-209. [PMID: 10605837 DOI: 10.1016/s0162-0134(99)00128-2] [Citation(s) in RCA: 26] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/01/2022]
43
Lawrence CC, Gerfen GJ, Samano V, Nitsche R, Robins MJ, Rétey J, Stubbe J. Binding of Cob(II)alamin to the adenosylcobalamin-dependent ribonucleotide reductase from Lactobacillus leichmannii. Identification of dimethylbenzimidazole as the axial ligand. J Biol Chem 1999;274:7039-42. [PMID: 10066759 DOI: 10.1074/jbc.274.11.7039] [Citation(s) in RCA: 61] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]  Open
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