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Nonn M, Fustero S, Kiss L. Application of 2-Azabicyclo[2.2.1]Hept-5-En-3-One (Vince Lactam) in Synthetic Organic and Medicinal Chemistry. CHEM REC 2024; 24:e202400070. [PMID: 39008895 DOI: 10.1002/tcr.202400070] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/15/2024] [Revised: 05/22/2024] [Indexed: 07/17/2024]
Abstract
2-Azabicyclo[2.2.1]hept-5-en-3-one (Vince lactam) is known to be a valuable building block in synthetic organic chemistry and drug research. It is an important precursor to access of some blockbuster antiviral drugs such as Carbovir or Abacavir as well as other carbocyclic neuraminidase inhibitors as antiviral agents. The ring C=C bond of the Vince lactam allows versatile chemical manipulations to create not only functionalized γ-lactams, but also γ-amino acid derivatives with a cyclopentane framework. The aim of the current account is to summarize the chemistry of Vince lactam, its synthetic utility and application in organic and medicinal chemistry over the last decade.
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Affiliation(s)
- Melinda Nonn
- MTA TTK Lendület Artificial Transporter Research Group, Institute of Materials and Environmental Chemistry, HUN-REN Research Center for Natural Sciences, H-1117, Budapest, Magyar tudósok krt. 2, Hungary
| | - Santos Fustero
- Department of Organic Chemistry, University of Valencia, Pharmacy Faculty, València, 46100-Burjassot Valencia, Spain
| | - Loránd Kiss
- Institute of Organic Chemistry, Stereochemistry Research Group, HUN-REN Research Center for Natural Sciences, H-1117, Budapest, Magyar tudósok krt. 2, Hungary
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2
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Kamińska K, Iwan D, Trojnar J, Daszkiewicz M, Rode JE, Wojaczyński J, Wojaczyńska E. Rearrangement of thiazolidine derivatives - a synthesis of a chiral fused oxathiane-γ-lactam bicyclic system. Org Biomol Chem 2023; 21:9182-9191. [PMID: 37955209 DOI: 10.1039/d3ob01454a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2023]
Abstract
Reaction of L-cysteine with carbonyl compounds leads to thiazolidine derivatives which undergo a stereoselective conversion to two types of chiral bicyclic products bearing two or three stereogenic centers, including the first fused oxathiane-γ-lactam system.
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Affiliation(s)
- Karolina Kamińska
- Faculty of Chemistry, Wrocław University of Science and Technology, Wybrzeże Wyspiańskiego 27, 50-370 Wrocław, Poland.
| | - Dominika Iwan
- Faculty of Chemistry, Wrocław University of Science and Technology, Wybrzeże Wyspiańskiego 27, 50-370 Wrocław, Poland.
| | - Jakub Trojnar
- Faculty of Chemistry, Wrocław University of Science and Technology, Wybrzeże Wyspiańskiego 27, 50-370 Wrocław, Poland.
| | - Marek Daszkiewicz
- Institute of Low Temperature and Structure Research, Polish Academy of Sciences, Okólna St. 2, 50-422 Wrocław, Poland
| | - Joanna E Rode
- Institute of Nuclear Chemistry and Technology, Dorodna St. 16, 03-195 Warszawa, Poland
| | - Jacek Wojaczyński
- Faculty of Chemistry, University of Wrocław, F. Joliot-Curie St. 14, 50-383 Wrocław, Poland
| | - Elżbieta Wojaczyńska
- Faculty of Chemistry, Wrocław University of Science and Technology, Wybrzeże Wyspiańskiego 27, 50-370 Wrocław, Poland.
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3
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Li K, Cui L, Zhang Y, Jian Z. Amide-Functionalized Polyolefins and Facile Post-Transformations. Macromolecules 2023. [DOI: 10.1021/acs.macromol.2c02517] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]
Affiliation(s)
- Kangkang Li
- State Key Laboratory of Polymer Physics and Chemistry, Changchun Institute of Applied Chemistry, Chinese Academy of Sciences, Changchun 130022, China
- University of Science and Technology of China, Hefei 230026, China
| | - Lei Cui
- State Key Laboratory of Polymer Physics and Chemistry, Changchun Institute of Applied Chemistry, Chinese Academy of Sciences, Changchun 130022, China
| | - Yixin Zhang
- State Key Laboratory of Polymer Physics and Chemistry, Changchun Institute of Applied Chemistry, Chinese Academy of Sciences, Changchun 130022, China
| | - Zhongbao Jian
- State Key Laboratory of Polymer Physics and Chemistry, Changchun Institute of Applied Chemistry, Chinese Academy of Sciences, Changchun 130022, China
- University of Science and Technology of China, Hefei 230026, China
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4
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Lindman J, Gopalan G, Palo-Nieto C, Brandt P, Gising J, Larhed M. Diastereoselective Synthesis of N-Methylspiroindolines by Intramolecular Mizoroki-Heck Annulations. ACS OMEGA 2022; 7:32525-32535. [PMID: 36120037 PMCID: PMC9476516 DOI: 10.1021/acsomega.2c04111] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 06/30/2022] [Accepted: 08/15/2022] [Indexed: 06/15/2023]
Abstract
Spiroindolines represent a privileged structure in medicinal chemistry, although stereocontrol around the spirocarbon can be a synthetic challenge. Here we present a palladium(0)-catalyzed intramolecular Mizoroki-Heck annulation reaction from (+)-Vince lactam-derived cyclopentenyl-tethered 2-bromo-N-methylanilines for the formation of N-methylspiroindolines. A series of 14 N-methylspiroindolines were synthesized in 59-81% yield with diastereoselectivity >98%, which was rationalized by density functional theory calculations and confirmed through X-ray crystallography. One spiroindoline was converted to an N- and C-terminal protected rigidified unnatural amino acid, which could be orthogonally deprotected.
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5
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Zhu W, Butrin A, Melani RD, Doubleday PF, Ferreira GM, Tavares MT, Habeeb Mohammad TS, Beaupre BA, Kelleher NL, Moran GR, Liu D, Silverman RB. Rational Design, Synthesis, and Mechanism of (3 S,4 R)-3-Amino-4-(difluoromethyl)cyclopent-1-ene-1-carboxylic Acid: Employing a Second-Deprotonation Strategy for Selectivity of Human Ornithine Aminotransferase over GABA Aminotransferase. J Am Chem Soc 2022; 144:5629-5642. [PMID: 35293728 PMCID: PMC9181902 DOI: 10.1021/jacs.2c00924] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Human ornithine aminotransferase (hOAT) is a pyridoxal 5'-phosphate (PLP)-dependent enzyme that contains a similar active site to that of γ-aminobutyric acid aminotransferase (GABA-AT). Recently, pharmacological inhibition of hOAT was recognized as a potential therapeutic approach for hepatocellular carcinoma. In this work, we first studied the inactivation mechanisms of hOAT by two well-known GABA-AT inactivators (CPP-115 and OV329). Inspired by the inactivation mechanistic difference between these two aminotransferases, a series of analogues were designed and synthesized, leading to the discovery of analogue 10b as a highly selective and potent hOAT inhibitor. Intact protein mass spectrometry, protein crystallography, and dialysis experiments indicated that 10b was converted to an irreversible tight-binding adduct (34) in the active site of hOAT, as was the unsaturated analogue (11). The comparison of kinetic studies between 10b and 11 suggested that the active intermediate (17b) was only generated in hOAT and not in GABA-AT. Molecular docking studies and pKa computational calculations highlighted the importance of chirality and the endocyclic double bond for inhibitory activity. The turnover mechanism of 10b was supported by mass spectrometric analysis of dissociable products and fluoride ion release experiments. Notably, the stopped-flow experiments were highly consistent with the proposed mechanism, suggesting a relatively slow hydrolysis rate for hOAT. The novel second-deprotonation mechanism of 10b contributes to its high potency and significantly enhanced selectivity for hOAT inhibition.
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Affiliation(s)
- Wei Zhu
- Department of Chemistry, Chemistry of Life Processes Institute, and Center for Developmental Therapeutics, Northwestern University, Evanston, Illinois 60208, United States
| | - Arseniy Butrin
- Department of Chemistry and Biochemistry, Loyola University Chicago, Chicago, Illinois 60660, United States
| | - Rafael D Melani
- Department of Molecular Biosciences, Northwestern University, Evanston, Illinois 60208, United States
| | - Peter F Doubleday
- Department of Molecular Biosciences, Northwestern University, Evanston, Illinois 60208, United States
| | - Glaucio Monteiro Ferreira
- Department of Clinical and Toxicological Analyses, School of Pharmaceutical Sciences, University of São Paulo, São Paulo, SP 05508-000, Brazil
| | - Mauricio T Tavares
- Department of Molecular Medicine, Scripps Research, Jupiter, Florida 33458, United States
| | - Thahani S Habeeb Mohammad
- Department of Chemistry, Chemistry of Life Processes Institute, and Center for Developmental Therapeutics, Northwestern University, Evanston, Illinois 60208, United States
| | - Brett A Beaupre
- Department of Chemistry and Biochemistry, Loyola University Chicago, Chicago, Illinois 60660, United States
| | - Neil L Kelleher
- Department of Chemistry, Chemistry of Life Processes Institute, and Center for Developmental Therapeutics, Northwestern University, Evanston, Illinois 60208, United States.,Department of Molecular Biosciences, Northwestern University, Evanston, Illinois 60208, United States
| | - Graham R Moran
- Department of Chemistry and Biochemistry, Loyola University Chicago, Chicago, Illinois 60660, United States
| | - Dali Liu
- Department of Chemistry and Biochemistry, Loyola University Chicago, Chicago, Illinois 60660, United States
| | - Richard B Silverman
- Department of Chemistry, Chemistry of Life Processes Institute, and Center for Developmental Therapeutics, Northwestern University, Evanston, Illinois 60208, United States.,Department of Molecular Biosciences, Northwestern University, Evanston, Illinois 60208, United States.,Department of Pharmacology, Feinberg School of Medicine, Northwestern University, Chicago, Illinois 60611, United States
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6
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Barashkin AA, Polyakov VS, Shikut NL, Putilova AD, Gorovoy AR, Degtiarev AD, Tafeenko VA, Tarasevich BN, Zyk NV, Beloglazkina EK. Diastereoselective cycloaddition of isatin azomethine ylides to 5-arylidene-2-thiohydantoins bearing 3-positioned chiral substituent. MENDELEEV COMMUNICATIONS 2022. [DOI: 10.1016/j.mencom.2022.03.022] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]
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7
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Al-Majid AM, Alammari AS, Alshahrani S, Haukka M, Islam MS, Barakat A. Cu(ii)-thiophene-2,5-bis(amino-alcohol) mediated asymmetric Aldol reaction and Domino Knoevenagel Michael cyclization: a new highly efficient Lewis acid catalyst. RSC Adv 2022; 12:6149-6165. [PMID: 35424540 PMCID: PMC8982094 DOI: 10.1039/d2ra00674j] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/31/2022] [Accepted: 02/09/2022] [Indexed: 11/24/2022] Open
Abstract
The highly efficient Lewis acid-catalytic system Cu(ii)-thiophene-2,5-bis(amino-alcohol) has been developed for enantioselective Aldol reaction of isatin derivatives with ketones. The new catalytic system also proved to be highly enantioselective for the one pot three-component Domino Knoevenagel Michael cyclization reaction of substituted isatin with malononitrile and ethylacetoacetate. The chiral ligand (2S,2'S)-2,2'-((thiophene-2,5-diylbis(methylene))bis(azanediyl))bis(3-phenylpropan-1-ol) (L1) in combination with Cu(OAc)2·H2O employed as a new Lewis acid catalyst, furnished 3-substituted-3-hydroxyindolin-2-ones derivatives (3a-s) in good to excellent yields (81-99%) with high enantioselectivities (up to 96% ee) and spiro[4H-pyran-3,3-oxindole] derivatives (6a-l) in excellent yields (89-99%) with high ee (up to 95%). These aldol products and spiro-oxindoles constitute a core structural motif in a large number of pharmaceutically active molecules and natural products.
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Affiliation(s)
- Abdullah Mohammed Al-Majid
- Department of Chemistry, College of Science, King Saud University P. O. Box 2455 Riyadh 11451 Saudi Arabia +966-61-1467-5992
| | - Abdullah Saleh Alammari
- Department of Chemistry, College of Science, King Saud University P. O. Box 2455 Riyadh 11451 Saudi Arabia +966-61-1467-5992
| | - Saeed Alshahrani
- Department of Chemistry, College of Science, King Saud University P. O. Box 2455 Riyadh 11451 Saudi Arabia +966-61-1467-5992
| | - Matti Haukka
- Department of Chemistry, University of Jyväskylä P. O. Box 35 FI-40014 Jyväskylä Finland
| | - Mohammad Shahidul Islam
- Department of Chemistry, College of Science, King Saud University P. O. Box 2455 Riyadh 11451 Saudi Arabia +966-61-1467-5992
| | - Assem Barakat
- Department of Chemistry, College of Science, King Saud University P. O. Box 2455 Riyadh 11451 Saudi Arabia +966-61-1467-5992
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8
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Converting the E. coli Isochorismatase Nicotinamidase into γ-Lactamase. Microbiol Spectr 2022; 10:e0098521. [PMID: 35171012 PMCID: PMC8849098 DOI: 10.1128/spectrum.00985-21] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
Nicotinamidase (Nic) (E.C.3.5.1.19) is a representative protein of the isochorismatase superfamily from Escherichia coli. Despite showing no (+) γ-lactamase activity, its active site constellations (ASCs) are very similar to those of two other known (+) γ-lactamases (Mhpg and RutB), indicating that it could be a latent (+) γ-lactamase. In this study, the primary sequences of the five representative proteins of the isochorismatase superfamily from E. coli were aligned, and a "lid"-like unit of a six-residue loop (112GENPLV117) was established. The Nic protein was converted to a (+) γ-lactamase by eliminating the loop. A conversion mechanism was proposed in which a more compact binding pocket is formed after lid deletion. In addition, the "shrunk" binding pocket stabilized the small substrate and the catalysis intermediate, which triggered catalysis. Moreover, we identified another latent (+) γ-lactamase in the E. coli isochorismatase superfamily and successfully converted it into an active (+) γ-lactamase. In summary, the isochorismatase superfamily is potentially a good candidate for obtaining novel (+) γ-lactamases. IMPORTANCE γ-Lactamases are important enzymatic catalysts in preparing optically pure γ-lactam enantiomers, which are high-value chiral intermediates. Different studies have presumed that the isochorismatase superfamily is a candidate to obtain novel (+) γ-lactamases. By engineering its substrate entrance tunnel, Nic, a representative protein of the isochorismatase superfamily, is converted to a (+) γ-lactamase. Tunnel engineering has proven effective in enhancing enzyme promiscuity. Therefore, the latent or active γ-lactamase activities of the isochorismatase superfamily members indicate their evolutionary path positions.
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9
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Akabane-Nakata M, Chickering T, Harp JM, Schlegel MK, Matsuda S, Egli M, Manoharan M. RNAs Containing Carbocyclic Ribonucleotides. Org Lett 2022; 24:525-530. [PMID: 34958225 DOI: 10.1021/acs.orglett.1c03936] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Toward the goal of evaluation of carbocyclic ribonucleoside-containing oligonucleotide therapeutics, we developed convenient, scalable syntheses of all four carbocyclic ribonucleotide phosphoramidites and the uridine solid-support building block. Crystallographic analysis confirmed configuration and stereochemistry of these building blocks. Duplexes with carbocyclic RNA (car-RNA) modifications in one strand were less thermodynamically stable than duplexes with unmodified RNA. However, circular dichroism spectroscopy indicated that global conformations of the duplexes containing car-RNAs were similar to those in the unmodified duplexes.
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Affiliation(s)
- Masaaki Akabane-Nakata
- Alnylam Pharmaceuticals, 675 W Kendall Street, Cambridge, Massachusetts 02142, United States
| | - Tyler Chickering
- Alnylam Pharmaceuticals, 675 W Kendall Street, Cambridge, Massachusetts 02142, United States
| | - Joel M Harp
- Department of Biochemistry, School of Medicine, Vanderbilt University, Nashville, Tennessee 37232, United States
| | - Mark K Schlegel
- Alnylam Pharmaceuticals, 675 W Kendall Street, Cambridge, Massachusetts 02142, United States
| | - Shigeo Matsuda
- Alnylam Pharmaceuticals, 675 W Kendall Street, Cambridge, Massachusetts 02142, United States
| | - Martin Egli
- Department of Biochemistry, School of Medicine, Vanderbilt University, Nashville, Tennessee 37232, United States
| | - Muthiah Manoharan
- Alnylam Pharmaceuticals, 675 W Kendall Street, Cambridge, Massachusetts 02142, United States
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10
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Rodríguez DF, Moglie Y, Ramírez-Sarmiento CA, Singh SK, Dua K, Zacconi FC. Bio-click chemistry: a bridge between biocatalysis and click chemistry. RSC Adv 2022; 12:1932-1949. [PMID: 35425264 PMCID: PMC8979012 DOI: 10.1039/d1ra08053a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/02/2021] [Accepted: 12/28/2021] [Indexed: 11/21/2022] Open
Abstract
The fields of click chemistry and biocatalysis have rapidly grown over the last two decades. The development of robust and active biocatalysts and the widespread use of straightforward click reactions led to significant interactions between these two fields. Therefore the name bio-click chemistry seems to be an accurate definition of chemoenzymatic reactions cooperating with click transformations. Bio-click chemistry can be understood as the approach towards molecules of high-value using a green and sustainable approach by exploiting the potential of biocatalytic enzyme activity combined with the reliable nature of click reactions. This review summarizes the principal bio-click chemistry reactions reported over the last two decades, with a special emphasis on small molecules. Contributions to the field of bio-click chemistry are manifold, but the synthesis of chiral molecules with applications in medicinal chemistry and sustainable syntheses will be especially highlighted.
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Affiliation(s)
- Diego F Rodríguez
- Facultad de Química y de Farmacia, Pontificia Universidad Católica de Chile Chile
| | - Yanina Moglie
- Departamento de Química, INQUISUR, Universidad Nacional del Sur (UNS)-CONICET Argentina
| | - César A Ramírez-Sarmiento
- Institute for Biological and Medical Engineering, Schools of Engineering, Medicine and Biological Sciences, Pontificia Universidad Católica de Chile Santiago Chile.,ANID - Millennium Science Initiative Program, Millennium Institute for Integrative Biology (iBio) Santiago Chile
| | - Sachin Kumar Singh
- School of Pharmaceutical Sciences, Lovely Professional University Phagwara 144411 Punjab India
| | - Kamal Dua
- Discipline of Pharmacy, Graduate School of Health, University of Technology Sydney NSW 2007 Australia.,Faculty of Health, Australian Research Centre in Complementary and Integrative Medicine, University of Technology Sydney Ultimo Australia
| | - Flavia C Zacconi
- Facultad de Química y de Farmacia, Pontificia Universidad Católica de Chile Chile .,Institute for Biological and Medical Engineering, Schools of Engineering, Medicine and Biological Sciences, Pontificia Universidad Católica de Chile Santiago Chile.,Centro de Investigaciones en Nanotecnología y Materiales Avanzados, CIEN-UC, Pontificia Universidad Católica de Chile Santiago Chile
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11
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Ortega‐Rojas MA, Castillo E, Razo‐Hernández RS, Pastor N, Juaristi E, Escalante J. Effect of the Substituent and Amino Group Position on the Lipase‐Catalyzed Resolution of γ‐Amino Esters: A Molecular Docking Study Shedding Light on
Candida antarctica
lipase B Enantioselectivity. European J Org Chem 2021. [DOI: 10.1002/ejoc.202100712] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/25/2023]
Affiliation(s)
- Marina A. Ortega‐Rojas
- Instituto de Investigación en Ciencias Básicas y Aplicadas Centro de Investigaciones Químicas Universidad Autónoma del Estado de Morelos Av. Universidad No. 1001, Col. Chamilpa C.P. 62210 Cuernavaca Morelos México
| | - Edmundo Castillo
- Departamento de Ingeniería Celular y Biocatálisis Instituto de Biotecnología UNAM Apartado Postal 510–3 C.P. 62271 Cuernavaca Morelos México
| | - Rodrigo Said Razo‐Hernández
- Instituto de Investigación en Ciencias Básicas y Aplicadas Centro de Investigación en Dinámica Celular Universidad Autónoma del Estado de Morelos Av. Universidad No. 1001, Col. Chamilpa C.P. 62210 Cuernavaca Morelos México
| | - Nina Pastor
- Instituto de Investigación en Ciencias Básicas y Aplicadas Centro de Investigación en Dinámica Celular Universidad Autónoma del Estado de Morelos Av. Universidad No. 1001, Col. Chamilpa C.P. 62210 Cuernavaca Morelos México
| | - Eusebio Juaristi
- Departamento de Química Centro de Investigación y de Estudios Avanzados Av. Instituto Politécnico Nacional No. 2508 07360 Ciudad de México México
- El Colegio Nacional Luis González Obregón 23, Centro Histórico 06020 Ciudad de México México
| | - Jaime Escalante
- Instituto de Investigación en Ciencias Básicas y Aplicadas Centro de Investigaciones Químicas Universidad Autónoma del Estado de Morelos Av. Universidad No. 1001, Col. Chamilpa C.P. 62210 Cuernavaca Morelos México
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12
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Rydzik AM, Balk R, Koegler M, Steinle T, Riether D, Gottschling D. Access to 1'-Amino Carbocyclic Phosphoramidite to Enable Postsynthetic Functionalization of Oligonucleotides. Org Lett 2021; 23:6735-6739. [PMID: 34424724 DOI: 10.1021/acs.orglett.1c02302] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/15/2023]
Abstract
We report a synthesis of a carbocyclic, abasic RNA phosphoramidite decorated with an amino functionality. The building block was efficiently incorporated into an RNA oligonucleotide in a site-specific manner, followed by deprotection to a free amino group. The amino moiety could be further derivatized as exemplified with fluorescein N-hydroxysuccinimide ester. Hence, this convertible building block may provide access to a variety of RNA oligonucleotides via postsynthetic amino group functionalization. In particular, providing a vector toward nucleobase replacements.
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Affiliation(s)
- Anna M Rydzik
- Boehringer Ingelheim Pharma GmbH & Co. KG, 88400 Biberach an der Riss, Germany
| | - Regina Balk
- Boehringer Ingelheim Pharma GmbH & Co. KG, 88400 Biberach an der Riss, Germany
| | | | - Tobias Steinle
- Boehringer Ingelheim Pharma GmbH & Co. KG, 88400 Biberach an der Riss, Germany
| | - Doris Riether
- Boehringer Ingelheim Pharma GmbH & Co. KG, 88400 Biberach an der Riss, Germany
| | - Dirk Gottschling
- Boehringer Ingelheim Pharma GmbH & Co. KG, 88400 Biberach an der Riss, Germany
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13
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Subnaik S, Sheridan K, Hobbs CE. Ring Opening Metathesis Polymerization of a New Monomer Derived from a Nitroso Diels–Alder Reaction. MACROMOL CHEM PHYS 2021. [DOI: 10.1002/macp.202100098] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- Selesha Subnaik
- Department of Chemistry Sam Houston State University Huntsville TX 77340 USA
| | - Katya Sheridan
- Department of Chemistry Sam Houston State University Huntsville TX 77340 USA
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14
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Shen S, Butrin A, Doubleday PF, Melani RD, Beaupre BA, Tavares MT, Ferreira GM, Kelleher NL, Moran GR, Liu D, Silverman RB. Turnover and Inactivation Mechanisms for ( S)-3-Amino-4,4-difluorocyclopent-1-enecarboxylic Acid, a Selective Mechanism-Based Inactivator of Human Ornithine Aminotransferase. J Am Chem Soc 2021; 143:8689-8703. [PMID: 34097381 PMCID: PMC8367020 DOI: 10.1021/jacs.1c02456] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/02/2023]
Abstract
The inhibition of human ornithine δ-aminotransferase (hOAT) is a potential therapeutic approach to treat hepatocellular carcinoma. In this work, (S)-3-amino-4,4-difluorocyclopent-1-enecarboxylic acid (SS-1-148, 6) was identified as a potent mechanism-based inactivator of hOAT while showing excellent selectivity over other related aminotransferases (e.g., GABA-AT). An integrated mechanistic study was performed to investigate the turnover and inactivation mechanisms of 6. A monofluorinated ketone (M10) was identified as the primary metabolite of 6 in hOAT. By soaking hOAT holoenzyme crystals with 6, a precursor to M10 was successfully captured. This gem-diamine intermediate, covalently bound to Lys292, observed for the first time in hOAT/ligand crystals, validates the turnover mechanism proposed for 6. Co-crystallization yielded hOAT in complex with 6 and revealed a novel noncovalent inactivation mechanism in hOAT. Native protein mass spectrometry was utilized for the first time in a study of an aminotransferase inactivator to validate the noncovalent interactions between the ligand and the enzyme; a covalently bonded complex was also identified as a minor form observed in the denaturing intact protein mass spectrum. Spectral and stopped-flow kinetic experiments supported a lysine-assisted E2 fluoride ion elimination, which has never been observed experimentally in other studies of related aminotransferase inactivators. This elimination generated the second external aldimine directly from the initial external aldimine, rather than the typical E1cB elimination mechanism, forming a quinonoid transient state between the two external aldimines. The use of native protein mass spectrometry, X-ray crystallography employing both soaking and co-crystallization methods, and stopped-flow kinetics allowed for the detailed elucidation of unusual turnover and inactivation pathways.
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Affiliation(s)
- Sida Shen
- Department of Chemistry, Center for Molecular Innovation and Drug Discovery, and Center for Developmental Therapeutics, Northwestern University, Evanston, Illinois 60208, United States
| | - Arseniy Butrin
- Department of Chemistry and Biochemistry, Loyola University Chicago, Chicago, Illinois 60660, United States
| | - Peter F. Doubleday
- Department of Molecular Biosciences, Northwestern University, Evanston, Illinois 60208, United States
| | - Rafael D. Melani
- Department of Molecular Biosciences, Northwestern University, Evanston, Illinois 60208, United States
| | - Brett A. Beaupre
- Department of Chemistry and Biochemistry, Loyola University Chicago, Chicago, Illinois 60660, United States
| | - Mauricio T. Tavares
- Department of Molecular Medicine, Scripps Research, Jupiter, Florida 33458, United States
| | - Glaucio M. Ferreira
- Department of Clinical and Toxicological Analyses, School of Pharmaceutical Sciences, University of São Paulo, São Paulo, SP, 05508-000, Brazil
| | - Neil L. Kelleher
- Department of Chemistry, Center for Molecular Innovation and Drug Discovery, and Center for Developmental Therapeutics, Northwestern University, Evanston, Illinois 60208, United States,Department of Molecular Biosciences, Northwestern University, Evanston, Illinois 60208, United States
| | - Graham R. Moran
- Department of Chemistry and Biochemistry, Loyola University Chicago, Chicago, Illinois 60660, United States
| | - Dali Liu
- Department of Chemistry and Biochemistry, Loyola University Chicago, Chicago, Illinois 60660, United States,Corresponding authors: (R.B.S.) . Phone: +1-847-491-5653; (D.L.) . Phone: +1-773-508-3093
| | - Richard B. Silverman
- Department of Chemistry, Center for Molecular Innovation and Drug Discovery, and Center for Developmental Therapeutics, Northwestern University, Evanston, Illinois 60208, United States,Department of Molecular Biosciences, Northwestern University, Evanston, Illinois 60208, United States,Department of Pharmacology, Northwestern University, Chicago, Illinois, 60611, United States,Corresponding authors: (R.B.S.) . Phone: +1-847-491-5653; (D.L.) . Phone: +1-773-508-3093
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15
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Diastereoselective Diboration of Cyclic Alkenes: Application to the Synthesis of Aristeromycin. Org Lett 2021; 23:2863-2867. [PMID: 33792325 DOI: 10.1021/acs.orglett.1c00353] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
The Pt-catalyzed diboration of cyclic alkenes is extended to unsaturated heterocycles and bicyclic compounds and can be accomplished in a diastereoselective fashion. The optimal procedures, substrate scope, and diastereoselectivity were investigated, and examples employing both homogeneous and heterogeneous catalysis were examined. Lastly, application to the construction of the nucleoside analog (±)-aristeromycin was conducted.
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16
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Fathi M, Naimi-Jamal MR, Dekamin MG, Panahi L, Demchuk OM. A straightforward, environmentally beneficial synthesis of spiro[diindeno[1,2-b:2',1'-e]pyridine-11,3'-indoline]-2',10,12-triones mediated by a nano-ordered reusable catalyst. Sci Rep 2021; 11:4820. [PMID: 33649384 PMCID: PMC7921678 DOI: 10.1038/s41598-021-84209-6] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/20/2020] [Accepted: 02/15/2021] [Indexed: 11/09/2022] Open
Abstract
A library of new spiro[diindeno[1,2-b:2',1'-e]pyridine-11,3'-indoline]-2',10,12-trione derivatives has been prepared in an efficient, one-pot pseudo four-component method mediated by a reusable heterogeneous nano-ordered mesoporous SO3H functionalized-silica (MCM-41-SO3H) catalyst. Excellent yields, short reaction times, as well as convenient non-chromatographic purification of the products and environmental benefits such as green and metal-free conditions constitute the main advantages of the developed synthetic methodology. The obtained fused indole-indenone dyes would be of interest to pharmaceutical and medicinal chemistry. Furthermore, due to their sensitivity to pH changes, they could be used as novel pH indicators.
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Affiliation(s)
- Mahsa Fathi
- Research Laboratory of Green Organic Synthesis and Polymers, Department of Chemistry, Iran University of Science and Technology, Tehran, 16846-13114, Islamic Republic of Iran
| | - M Reza Naimi-Jamal
- Research Laboratory of Green Organic Synthesis and Polymers, Department of Chemistry, Iran University of Science and Technology, Tehran, 16846-13114, Islamic Republic of Iran.
| | - Mohammad G Dekamin
- Research Laboratory of Green Organic Synthesis and Polymers, Department of Chemistry, Iran University of Science and Technology, Tehran, 16846-13114, Islamic Republic of Iran
| | - Leila Panahi
- Research Laboratory of Green Organic Synthesis and Polymers, Department of Chemistry, Iran University of Science and Technology, Tehran, 16846-13114, Islamic Republic of Iran
| | - Oleg M Demchuk
- Pharmaceutical Research Institute, 8 Rydygiera Street, 01-793, Warsaw, Poland
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17
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Yoshida Y, Honma M, Kimura Y, Abe H. Structure, Synthesis and Inhibition Mechanism of Nucleoside Analogues as HIV-1 Reverse Transcriptase Inhibitors (NRTIs). ChemMedChem 2021; 16:743-766. [PMID: 33230979 DOI: 10.1002/cmdc.202000695] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/05/2020] [Revised: 10/31/2020] [Indexed: 12/13/2022]
Abstract
Acquired immunodeficiency syndrome (AIDS) is caused by infection with the human immunodeficiency virus (HIV). Although treatments against HIV infection are available, AIDS remains a serious disease that causes many deaths annually. Although a variety of anti-HIV drugs have been synthesized and marketed to treat HIV-infected patients, nucleoside analogue reverse transcriptase inhibitors (NRTIs), which mimic nucleosides, are used extensively and remain a subject of interest to medicinal chemists. However, HIV has acquired drug resistance against NRTIs, and thus the struggle to find novel therapies continues. In this review, we trace the trajectory of NRTIs, focusing on the synthesis, mechanisms of action and applications of NRTIs that have been developed.
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Affiliation(s)
- Yuki Yoshida
- Graduate School of Science, Department of Chemistry, Nagoya University Furo-cho, Chikusa-ku, Nagoya, Aichi, 464-8602, Japan
| | - Masakazu Honma
- Nucleic Acid Medicine Research Laboratories, Research Functions Unit, R&D Division, Kyowa Kirin Co., Ltd., 3-6-6, Asahi-machi, Machida-shi, >, Tokyo, 194-8533, Japan
| | - Yasuaki Kimura
- Graduate School of Science, Department of Chemistry, Nagoya University Furo-cho, Chikusa-ku, Nagoya, Aichi, 464-8602, Japan
| | - Hiroshi Abe
- Graduate School of Science, Department of Chemistry, Nagoya University Furo-cho, Chikusa-ku, Nagoya, Aichi, 464-8602, Japan.,Research Center for Materials Science, Nagoya University Furo-cho, Chikusa-ku, Nagoya, Aichi, 464-8602, Japan.,CREST, Japan Science and Technology Agency, 7, Gobancho, Chiyoda-ku, Tokyo, 102-0076, Japan.,Institute for Glyco-core Research (iGCORE), Nagoya University Furo-cho, Chikusa-ku, Nagoya, Aichi, 464-8602, Japan
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18
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Slagman S, Fessner WD. Biocatalytic routes to anti-viral agents and their synthetic intermediates. Chem Soc Rev 2021; 50:1968-2009. [DOI: 10.1039/d0cs00763c] [Citation(s) in RCA: 18] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Abstract
An assessment of biocatalytic strategies for the synthesis of anti-viral agents, offering guidelines for the development of sustainable production methods for a future COVID-19 remedy.
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Affiliation(s)
- Sjoerd Slagman
- Institut für Organische Chemie und Biochemie
- Technische Universität Darmstadt
- Germany
| | - Wolf-Dieter Fessner
- Institut für Organische Chemie und Biochemie
- Technische Universität Darmstadt
- Germany
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19
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Smith SN, Craig R, Connon SJ. Divergent Synthesis of γ-Amino Acid and γ-Lactam Derivatives from meso-Glutaric Anhydrides. Chemistry 2020; 26:13378-13382. [PMID: 32996163 DOI: 10.1002/chem.202003280] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/13/2020] [Indexed: 12/18/2022]
Abstract
The first divergent synthesis of both γ-amino acid and γ-lactam derivatives from meso-glutaric anhydrides is described. The organocatalytic desymmetrisation with TMSN3 relies on controlled generation of a nucleophilic ammonium azide species mediated by a polystyrene-bound base to promote efficient silylazidation. After Curtius rearrangement of the acyl azide intermediate to access the corresponding isocyanate, hydrolysis/alcoholysis provided uniformly high yields of γ-amino acids and their N-protected counterparts. The same intermediates were shown to undergo an unprecedented decarboxylation-cyclisation cascade in situ to provide synthetically useful yields of γ-lactam derivatives without using any further activating agents. Mechanistic insights invoke the intermediacy of an unconventional γ-N-carboxyanhydride (γ-NCA) in the latter process. Among the examples prepared using this transformation are 8 APIs/molecules of considerable medicinal interest.
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Affiliation(s)
- Simon N Smith
- School of Chemistry, Trinity Biomedical Sciences Institute, Trinity College Dublin, 152-160 Pearse Street, Dublin, 2, Ireland
| | - Ryan Craig
- School of Chemistry, Trinity Biomedical Sciences Institute, Trinity College Dublin, 152-160 Pearse Street, Dublin, 2, Ireland
| | - Stephen J Connon
- School of Chemistry, Trinity Biomedical Sciences Institute, Trinity College Dublin, 152-160 Pearse Street, Dublin, 2, Ireland
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20
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Kiss L, Benke Z, Remete AM, Fülöp F. Diversity-oriented Functionalization of Cyclodienes Through Selective Cycloaddition/Ring-opening/Cross-metathesis Protocols; Transformation of a "Flatland" into Three-dimensional Scaffolds With Stereo- and Regiocontrol. CHEM REC 2020; 20:1129-1141. [PMID: 32720742 DOI: 10.1002/tcr.202000070] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/11/2020] [Revised: 07/05/2020] [Accepted: 07/06/2020] [Indexed: 01/07/2023]
Abstract
This article presents selective transformations of some readily available cyclodienes through simple chemical procedures into novel functionalized small-molecular entities. The syntheses hereby described involved selective cycloadditions, followed by ring-opening metathesis of the resulting β-lactam or isoxazoline derivatives and selective cross-metathesis by differentiation of the olefin bonds on the alkenylated heterocycles. The cross-metathesis transformations have been detailed, which were performed under various experimental conditions with the aim of exploring chemodiscrimination of the olefin bonds and delivering the corresponding functionalized β-lactam or isoxazoline derivatives.
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Affiliation(s)
- Loránd Kiss
- Institute of Pharmaceutical Chemistry, University of Szeged, H-6720, Szeged, Eötvös u. 6, Hungary.,University of Szeged, I, nterdisciplinary Excellence Centre, Institute of Pharmaceutical Chemistry, H-6720, Szeged, Eötvös u. 6, Hungary
| | - Zsanett Benke
- Institute of Pharmaceutical Chemistry, University of Szeged, H-6720, Szeged, Eötvös u. 6, Hungary.,University of Szeged, I, nterdisciplinary Excellence Centre, Institute of Pharmaceutical Chemistry, H-6720, Szeged, Eötvös u. 6, Hungary
| | - Attila M Remete
- Institute of Pharmaceutical Chemistry, University of Szeged, H-6720, Szeged, Eötvös u. 6, Hungary.,University of Szeged, I, nterdisciplinary Excellence Centre, Institute of Pharmaceutical Chemistry, H-6720, Szeged, Eötvös u. 6, Hungary
| | - Ferenc Fülöp
- Institute of Pharmaceutical Chemistry, University of Szeged, H-6720, Szeged, Eötvös u. 6, Hungary.,University of Szeged, I, nterdisciplinary Excellence Centre, Institute of Pharmaceutical Chemistry, H-6720, Szeged, Eötvös u. 6, Hungary.,MTA-SZTE Stereochemistry Research Group, Hungarian Academy of Sciences, H-6720, Szeged, Eötvös u. 6, Hungary
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21
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Nonn M, Remete AM, Kiss L. Structural Diversity‐Oriented Synthesis of Orthogonally Protected Cyclic Amino Acid Derivatives with Multiple Stereogenic Centers. Helv Chim Acta 2020. [DOI: 10.1002/hlca.202000090] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Affiliation(s)
- Melinda Nonn
- Institute of Pharmaceutical ChemistryUniversity of Szeged Eötvös u. 6 HU-6720 Szeged Hungary
- Interdisciplinary Excellence CentreInstitute of Pharmaceutical ChemistryUniversity of Szeged Eötvös u. 6, HU 6720 Szeged Hungary
- MTA-SZTE Stereochemistry Research GroupHungarian Academy of Sciences Eötvös u. 6 HU-6720 Szeged Hungary
| | - Attila M. Remete
- Institute of Pharmaceutical ChemistryUniversity of Szeged Eötvös u. 6 HU-6720 Szeged Hungary
- Interdisciplinary Excellence CentreInstitute of Pharmaceutical ChemistryUniversity of Szeged Eötvös u. 6, HU 6720 Szeged Hungary
| | - Loránd Kiss
- Institute of Pharmaceutical ChemistryUniversity of Szeged Eötvös u. 6 HU-6720 Szeged Hungary
- Interdisciplinary Excellence CentreInstitute of Pharmaceutical ChemistryUniversity of Szeged Eötvös u. 6, HU 6720 Szeged Hungary
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22
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Semina E, Tuzina P, Bienewald F, Hashmi ASK, Schaub T. Ruthenium-catalyzed synthesis of vinylamides at low acetylene pressure. Chem Commun (Camb) 2020; 56:5977-5980. [PMID: 32347853 DOI: 10.1039/d0cc01533d] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The reaction of cyclic amides with acetylene under low pressure, using ruthenium-phosphine catalysts, afforded a broad variety of N-vinylated amides including (azabicyclic) lactams, oxazolidinones, benzoisoxazolones, isoindolinones, quinoxalinones, oxazinanones, cyclic urea derivatives (imidazolidinones), nucleobases (thymine), amino acid anhydrides and thiazolidinone.
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Affiliation(s)
- Elena Semina
- Catalysis Research Laboratory (CaRLa) Im Neuenheimer Feld 584, 69120 Heidelberg, Germany
| | - Pavel Tuzina
- Organic Synthesis, BASF SE Carl-Bosch-Str. 38, 67056 Ludwigshafen, Germany.
| | - Frank Bienewald
- Organic Synthesis, BASF SE Carl-Bosch-Str. 38, 67056 Ludwigshafen, Germany.
| | - A Stephen K Hashmi
- Catalysis Research Laboratory (CaRLa) Im Neuenheimer Feld 584, 69120 Heidelberg, Germany and Organisch-Chemisches Institut, Heidelberg University Im Neuenheimer Feld 270, 69120 Heidelberg, Germany
| | - Thomas Schaub
- Catalysis Research Laboratory (CaRLa) Im Neuenheimer Feld 584, 69120 Heidelberg, Germany and Organic Synthesis, BASF SE Carl-Bosch-Str. 38, 67056 Ludwigshafen, Germany.
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23
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Kang B, Zhang Q, Qu G, Guo H. The Enantioselective Synthesis of Chiral Carbocyclic Nucleosides via Palladium‐Catalyzed Asymmetric Allylic Amination of Alicyclic MBH Adducts with Purines. Adv Synth Catal 2020. [DOI: 10.1002/adsc.202000088] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Affiliation(s)
- Bo Kang
- Henan Key Laboratory of Organic Functional Molecules and Drug Innovation, Key Laboratory of Green Chemical Media and Reactions, Ministry of Education, Collaborative Innovation Center of Henan Province for Green Manufacturing of Fine Chemicals, School of Chemistry and Chemical EngineeringHenan Normal University, Xinxiang Henan 453007 People's Republic of China
| | - Qi‐Ying Zhang
- Henan Key Laboratory of Organic Functional Molecules and Drug Innovation, Key Laboratory of Green Chemical Media and Reactions, Ministry of Education, Collaborative Innovation Center of Henan Province for Green Manufacturing of Fine Chemicals, School of Chemistry and Chemical EngineeringHenan Normal University, Xinxiang Henan 453007 People's Republic of China
| | - Gui‐Rong Qu
- Henan Key Laboratory of Organic Functional Molecules and Drug Innovation, Key Laboratory of Green Chemical Media and Reactions, Ministry of Education, Collaborative Innovation Center of Henan Province for Green Manufacturing of Fine Chemicals, School of Chemistry and Chemical EngineeringHenan Normal University, Xinxiang Henan 453007 People's Republic of China
| | - Hai‐Ming Guo
- Henan Key Laboratory of Organic Functional Molecules and Drug Innovation, Key Laboratory of Green Chemical Media and Reactions, Ministry of Education, Collaborative Innovation Center of Henan Province for Green Manufacturing of Fine Chemicals, School of Chemistry and Chemical EngineeringHenan Normal University, Xinxiang Henan 453007 People's Republic of China
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24
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Li H, Gao S, Qiu Y, Liang C, Zhu S, Zheng G. Genome mining integrating semi-rational protein engineering and nanoreactor design: roadmap for a robust biocatalyst for industrial resolution of Vince lactam. Appl Microbiol Biotechnol 2019; 104:1109-1123. [PMID: 31828408 DOI: 10.1007/s00253-019-10275-6] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/02/2019] [Revised: 11/13/2019] [Accepted: 11/23/2019] [Indexed: 11/25/2022]
Abstract
Biomanufacturing of chemicals using biocatalysts is an attractive strategy for the production of valuable pharmaceuticals since it is usually more economical and has a much-reduced environmental impact. However, there are often challenges such as their thermal instability that should be overcome before a newly discovered enzyme is eventually translated into industrial processes. In this work, we describe a roadmap for the development of a robust catalyst for industrial resolution of Vince lactam, a key intermediate for the synthesis of carbocyclic-nucleoside-related pharmaceuticals. By a genome mining strategy, a new (+)-γ-lactamase (MiteL) from Microbacterium testaceum was successfully discovered and biochemically characterized. In vitro studies showed that the enzyme exhibited high activity but poor enantioselectivity (E = 6.3 ± 0.2) toward racemic Vince lactam, and thus, it is not suitable for industrial applications. Based on structural modeling and docking studies, a semi-rational engineering strategy combined with an efficient screening method was then applied to improve the enantioselectivity of MiteL. Several mutants with significant shifting stereoselectivity toward (-)-γ-lactam were obtained by site-saturation mutagenesis. Synergy effects led to the final mutant F14D/Q114R/M117L, which enabled efficient acquisition of (-)-γ-lactam with a high E value (> 200). The mutant was biochemically characterized, and the docking studies suggested a plausible mechanism for its improved selectivity. Finally, a sunflower-like nanoreactor was successfully constructed to improve the mutant's robustness via protein supramolecular self-assembly. Thus, the synergism between semi-rational protein engineering and self-assembling immobilization enabled construction of a nanoreactor with superior properties, which can be used for resolution of Vince lactam in large scale.
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Affiliation(s)
- Hongxia Li
- State Key Laboratory of Chemical Resources Engineering, Beijing University of Chemical Technology, Beijing, 100029, People's Republic of China.,College of Life Science and Technology, Beijing University of Chemical Technology, Beijing, 100029, People's Republic of China
| | - Shuaihua Gao
- State Key Laboratory of Chemical Resources Engineering, Beijing University of Chemical Technology, Beijing, 100029, People's Republic of China.,College of Life Science and Technology, Beijing University of Chemical Technology, Beijing, 100029, People's Republic of China
| | - Yan Qiu
- State Key Laboratory of Chemical Resources Engineering, Beijing University of Chemical Technology, Beijing, 100029, People's Republic of China.,College of Life Science and Technology, Beijing University of Chemical Technology, Beijing, 100029, People's Republic of China
| | - Chaoqun Liang
- State Key Laboratory of Chemical Resources Engineering, Beijing University of Chemical Technology, Beijing, 100029, People's Republic of China.,College of Life Science and Technology, Beijing University of Chemical Technology, Beijing, 100029, People's Republic of China
| | - Shaozhou Zhu
- State Key Laboratory of Chemical Resources Engineering, Beijing University of Chemical Technology, Beijing, 100029, People's Republic of China. .,College of Life Science and Technology, Beijing University of Chemical Technology, Beijing, 100029, People's Republic of China.
| | - Guojun Zheng
- State Key Laboratory of Chemical Resources Engineering, Beijing University of Chemical Technology, Beijing, 100029, People's Republic of China. .,College of Life Science and Technology, Beijing University of Chemical Technology, Beijing, 100029, People's Republic of China.
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25
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Liu Z, Chen J, Lu H, Li X, Gao Y, Coombs JR, Goldfogel MJ, Engle KM. Palladium(0)‐Catalyzed Directed
syn
‐1,2‐Carboboration and ‐Silylation: Alkene Scope, Applications in Dearomatization, and Stereocontrol by a Chiral Auxiliary. Angew Chem Int Ed Engl 2019. [DOI: 10.1002/ange.201910304] [Citation(s) in RCA: 27] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
Affiliation(s)
- Zhen Liu
- Department of ChemistryThe Scripps Research Institute 10550 North Torrey Pines Road La Jolla California 92037 USA
| | - Jiahao Chen
- Department of ChemistryThe Scripps Research Institute 10550 North Torrey Pines Road La Jolla California 92037 USA
| | - Hou‐Xiang Lu
- Department of ChemistryThe Scripps Research Institute 10550 North Torrey Pines Road La Jolla California 92037 USA
| | - Xiaohan Li
- Department of ChemistryThe Scripps Research Institute 10550 North Torrey Pines Road La Jolla California 92037 USA
| | - Yang Gao
- Department of ChemistryThe Scripps Research Institute 10550 North Torrey Pines Road La Jolla California 92037 USA
| | - John R. Coombs
- Chemical DevelopmentBristol-Myers Squibb One Squibb Drive New Brunswick New Jersey 08903 USA
| | - Matthew J. Goldfogel
- Chemical DevelopmentBristol-Myers Squibb One Squibb Drive New Brunswick New Jersey 08903 USA
| | - Keary M. Engle
- Department of ChemistryThe Scripps Research Institute 10550 North Torrey Pines Road La Jolla California 92037 USA
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26
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Liu Z, Chen J, Lu HX, Li X, Gao Y, Coombs JR, Goldfogel MJ, Engle KM. Palladium(0)-Catalyzed Directed syn-1,2-Carboboration and -Silylation: Alkene Scope, Applications in Dearomatization, and Stereocontrol by a Chiral Auxiliary. Angew Chem Int Ed Engl 2019; 58:17068-17073. [PMID: 31538388 PMCID: PMC7337986 DOI: 10.1002/anie.201910304] [Citation(s) in RCA: 80] [Impact Index Per Article: 16.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/17/2019] [Indexed: 11/08/2022]
Abstract
We report the development of palladium(0)-catalyzed syn-selective 1,2-carboboration and -silylation reactions of alkenes containing cleavable directing groups. With B2 pin2 or PhMe2 Si-Bpin as nucleophiles and aryl/alkenyl triflates as electrophiles, a broad range of mono-, di-, tri- and tetrasubstituted alkenes are compatible in these transformations. We further describe a directed dearomative 1,2-carboboration of electron-rich heteroarenes by employing this approach. Through use of a removable chiral directing group, we demonstrate the viability of achieving stereoinduction in Heck-type alkene 1,2-difunctionalization. This work introduces new avenues to access highly functionalized boronates and silanes with precise regio- and stereocontrol.
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Affiliation(s)
- Zhen Liu
- Department of Chemistry, The Scripps Research Institute, 10550 North Torrey Pines Road, La Jolla, California, 92037, USA
| | - Jiahao Chen
- Department of Chemistry, The Scripps Research Institute, 10550 North Torrey Pines Road, La Jolla, California, 92037, USA
| | - Hou-Xiang Lu
- Department of Chemistry, The Scripps Research Institute, 10550 North Torrey Pines Road, La Jolla, California, 92037, USA
| | - Xiaohan Li
- Department of Chemistry, The Scripps Research Institute, 10550 North Torrey Pines Road, La Jolla, California, 92037, USA
| | - Yang Gao
- Department of Chemistry, The Scripps Research Institute, 10550 North Torrey Pines Road, La Jolla, California, 92037, USA
| | - John R Coombs
- Chemical Development, Bristol-Myers Squibb, One Squibb Drive, New Brunswick, New Jersey, 08903, USA
| | - Matthew J Goldfogel
- Chemical Development, Bristol-Myers Squibb, One Squibb Drive, New Brunswick, New Jersey, 08903, USA
| | - Keary M Engle
- Department of Chemistry, The Scripps Research Institute, 10550 North Torrey Pines Road, La Jolla, California, 92037, USA
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27
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Atmaca U, Kaya R, Karaman HS, Çelik M, Gülçin İ. Synthesis of oxazolidinone from enantiomerically enriched allylic alcohols and determination of their molecular docking and biologic activities. Bioorg Chem 2019; 88:102980. [PMID: 31174010 DOI: 10.1016/j.bioorg.2019.102980] [Citation(s) in RCA: 50] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/18/2019] [Revised: 05/01/2019] [Accepted: 05/08/2019] [Indexed: 12/11/2022]
Abstract
Enantioselective synthesis of functionalized cyclic allylic alcohols via kinetic resolution in transesterifcation with different lipase enzymes has been developed. The influence of the enzymes and temperature activity was studied. By determination of ideal reaction conditions, byproduct formation is minimized; this made it possible to prepare enantiomerically enriched allylic alcohols in high ee's and good yields. Enantiomerically enriched allylic alcohols were used for enantiomerically enriched oxazolidinone synthesis. Using benzoate as a leaving group means that 1 mol % of potassium osmate is necessary and can be obtained high yields 98%. Inhibitory activities of enantiomerically enriched oxazolidinones (8, 10 and 12) were tested against human carbonic anhydrase I and II isoenzymes (hCA I and hCA II), acetylcholinesterase (AChE), and α-glycosidase (α-Gly) enzymes. These enantiomerically enriched oxazolidinones derivatives had Ki values in the range of 11.6 ± 2.1-66.4 ± 22.7 nM for hCA I, 34.1 ± 6.7-45.2 ± 12.9 nM for hCA II, 16.5 ± 2.9 to 35.6 ± 13.9 for AChE, and 22.3 ± 6.0-70.9 ± 9.9 nM for α-glycosidase enzyme. Moreover, they had high binding affinity with -5.767, -6.568, -9.014, and -8.563 kcal/mol for hCA I, hCA II, AChE and α-glycosidase enzyme, respectively. These results strongly supported the promising nature of the enantiomerically enriched oxazolidinones as selective hCA, AChE, and α-glycosidase inhibitors. Overall, due to these derivatives' inhibitory potential on the tested enzymes, they are promising drug candidates for the treatment of diseases like glaucoma, leukemia, epilepsy; Alzheimer's disease; type-2 diabetes mellitus that are associated with high enzymatic activity of CA, AChE, and α-glycosidase.
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Affiliation(s)
- Ufuk Atmaca
- Department of Chemistry, Faculty of Sciences, Ataturk University, 25240 Erzurum, Turkey; Oltu Vocational School, Ataturk University, 25400 Oltu-Erzurum, Turkey
| | - Rüya Kaya
- Department of Chemistry, Faculty of Sciences, Ataturk University, 25240 Erzurum, Turkey; Central Research and Application Laboratory, Agri Ibrahim Cecen University, 04100 Agri, Turkey
| | - Halide Sedef Karaman
- Department of Chemistry, Faculty of Sciences, Ataturk University, 25240 Erzurum, Turkey
| | - Murat Çelik
- Department of Chemistry, Faculty of Sciences, Ataturk University, 25240 Erzurum, Turkey
| | - İlhami Gülçin
- Department of Chemistry, Faculty of Sciences, Ataturk University, 25240 Erzurum, Turkey.
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28
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Enhancing the atypical esterase promiscuity of the γ-lactamase Sspg from
Sulfolobus solfataricus
by substrate screening. Appl Microbiol Biotechnol 2019; 103:4077-4087. [DOI: 10.1007/s00253-019-09758-3] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/21/2019] [Accepted: 03/06/2019] [Indexed: 11/26/2022]
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29
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Hughes DL. Review of Synthetic Routes and Final Forms of Integrase Inhibitors Dolutegravir, Cabotegravir, and Bictegravir. Org Process Res Dev 2019. [DOI: 10.1021/acs.oprd.9b00031] [Citation(s) in RCA: 21] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- David L. Hughes
- Cidara Therapeutics, Inc., 6310 Nancy Ridge Dr., Suite 101, San Diego, California 92121, United States
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30
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Remete AM, Kiss L. Alicyclic β- and γ-Amino Acids: Useful Scaffolds for the Stereocontrolled Access to Amino Acid-Based Carbocyclic Nucleoside Analogs. Molecules 2019; 24:molecules24010161. [PMID: 30609864 PMCID: PMC6337571 DOI: 10.3390/molecules24010161] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/10/2018] [Revised: 12/21/2018] [Accepted: 12/23/2018] [Indexed: 12/27/2022] Open
Abstract
Stereocontrolled synthesis of some amino acid-based carbocyclic nucleoside analogs containing ring C=C bond has been performed on β- and γ-lactam basis. Key steps were N-arylation of readily available β- or γ-lactam-derived amino ester isomers and amino alcohols with 5-amino-4,6-dichloropyrimidine; ring closure of the formed adduct with HC(OMe)3 and nucleophilic displacement of chlorine with various N-nucleophiles in the resulting 6-chloropurine moiety.
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Affiliation(s)
- Attila Márió Remete
- Institute of Pharmaceutical Chemistry, University of Szeged, Eötvös u. 6, H-6720 Szeged, Hungary.
- Interdisciplinary Excellence Centre, Institute of Pharmaceutical Chemistry, University of Szeged, Eötvös u. 6, H-6720 Szeged, Hungary.
| | - Loránd Kiss
- Institute of Pharmaceutical Chemistry, University of Szeged, Eötvös u. 6, H-6720 Szeged, Hungary.
- Interdisciplinary Excellence Centre, Institute of Pharmaceutical Chemistry, University of Szeged, Eötvös u. 6, H-6720 Szeged, Hungary.
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Ouchakour L, Ábrahámi RA, Forró E, Haukka M, Fülöp F, Kiss L. Stereocontrolled Synthesis of Fluorine-Containing Piperidine γ-Amino Acid Derivatives. European J Org Chem 2018. [DOI: 10.1002/ejoc.201801540] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/24/2023]
Affiliation(s)
- Lamiaa Ouchakour
- Institute of Pharmaceutical Chemistry; University of Szeged; Szeged, Eötvös u. Hungary
- Interdisciplinary Excellence Centre; Institute of Pharmaceutical Chemistry; University of Szeged; Szeged Hungary
| | - Renáta A. Ábrahámi
- Institute of Pharmaceutical Chemistry; University of Szeged; Szeged, Eötvös u. Hungary
| | - Enikő Forró
- Institute of Pharmaceutical Chemistry; University of Szeged; Szeged, Eötvös u. Hungary
| | - Matti Haukka
- Department of Chemistry; Institute of Pharmaceutical Chemistry; University of Jyväskylä; Finland
| | - Ferenc Fülöp
- Institute of Pharmaceutical Chemistry; University of Szeged; Szeged, Eötvös u. Hungary
- MTA-SZTE Stereochemistry Research Group; Hungarian Academy of Sciences; Szeged, Eötvös u. 6 Hungary
- Interdisciplinary Excellence Centre; Institute of Pharmaceutical Chemistry; University of Szeged; Szeged Hungary
| | - Loránd Kiss
- Institute of Pharmaceutical Chemistry; University of Szeged; Szeged, Eötvös u. Hungary
- Interdisciplinary Excellence Centre; Institute of Pharmaceutical Chemistry; University of Szeged; Szeged Hungary
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32
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Dynamic kinetic resolution of Vince lactam catalyzed by γ-lactamases: a mini-review. ACTA ACUST UNITED AC 2018; 45:1017-1031. [DOI: 10.1007/s10295-018-2093-6] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/18/2018] [Accepted: 10/16/2018] [Indexed: 10/28/2022]
Abstract
Abstract
γ-Lactamases are versatile enzymes used for enzymatic kinetic resolution of racemic Vince lactam (2-azabicyclo[2.2.1]hept-5-en-3-one) in the industry. Optically pure enantiomers and their hydrolytic products are widely employed as key chemical intermediates for developing a wide range of carbocyclic nucleoside medicines, including US FDA-approved drugs peramivir and abacavir. Owing to the broad applications in the healthcare industry, the resolution process of Vince lactam has witnessed tremendous progress during the past decades. Some of the most important advances are the enzymatic strategies involving γ-lactamases. The strong industrial demand drives the progress in various strategies for discovering novel biocatalysts. In the past few years, several new scientific breakthroughs, including the genome-mining strategy and elucidation of several crystal structures, boosted the research on γ-lactamases. So far, several families of γ-lactamases for resolution of Vince lactam have been discovered, and their number is continuously increasing. The purpose of this mini-review is to describe the discovery strategy and classification of these intriguing enzymes and to cover our current knowledge on their potential biological functions. Moreover, structural properties are described in addition to their possible catalytic mechanisms. Additionally, recent advances in the newest approaches, such as immobilization to increase stability, and other engineering efforts are introduced.
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Benke Z, Nonn M, Kardos M, Fustero S, Kiss L. Ring-opening metathesis of some strained bicyclic systems; stereocontrolled access to diolefinated saturated heterocycles with multiple stereogenic centers. Beilstein J Org Chem 2018; 14:2698-2707. [PMID: 30410631 PMCID: PMC6204778 DOI: 10.3762/bjoc.14.247] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/31/2018] [Accepted: 10/10/2018] [Indexed: 01/15/2023] Open
Abstract
Ring-opening metathesis (ROM) of various unsaturated, constrained bicyclic ring systems has been investigated with the use of commercial ruthenium-based catalysts. Starting from various cyclodienes, the corresponding derived bicyclic lactone, lactam, and isoxazoline derivatives were submitted to ROM under ethenolysis. These functionalized, strained bicyclic systems afforded novel highly-functionalized diolefinated heterocyclic scaffolds in ROM reactions with stereocontrol, through the conservation of the configuration of the stereogenic centers of the starting compounds.
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Affiliation(s)
- Zsanett Benke
- Institute of Pharmaceutical Chemistry, University of Szeged, Eötvös u. 6, H-6720 Szeged, Hungary
| | - Melinda Nonn
- Institute of Pharmaceutical Chemistry, University of Szeged, Eötvös u. 6, H-6720 Szeged, Hungary.,MTA-SZTE Stereochemistry Research Group, Hungarian Academy of Sciences, Eötvös u. 6, H-6720 Szeged, Hungary
| | - Márton Kardos
- Institute of Pharmaceutical Chemistry, University of Szeged, Eötvös u. 6, H-6720 Szeged, Hungary
| | - Santos Fustero
- Departamento de Química Orgánica, Facultad de Farmàcia, Universidad de Valencia, Av. Vicente Andrés Estellés, s/n 46100 Valencia, Spain
| | - Loránd Kiss
- Institute of Pharmaceutical Chemistry, University of Szeged, Eötvös u. 6, H-6720 Szeged, Hungary
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34
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Gao S, Lu Y, Li Y, Huang R, Zheng G. Enhancement in the catalytic activity of Sulfolobus solfataricus P2 (+)-γ-lactamase by semi-rational design with the aid of a newly established high-throughput screening method. Appl Microbiol Biotechnol 2018; 103:251-263. [DOI: 10.1007/s00253-018-9428-0] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/13/2018] [Revised: 08/26/2018] [Accepted: 09/19/2018] [Indexed: 10/28/2022]
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Just D, Hernandez-Guerra D, Kritsch S, Pohl R, Císařová I, Jones PG, Mackman R, Bahador G, Jahn U. Lithium Chloride Catalyzed Asymmetric Domino Aza-Michael Addition/[3 + 2] Cycloaddition Reactions for the Synthesis of Spiro- and Bicyclic α,β,γ-Triamino Acid Derivatives. European J Org Chem 2018. [DOI: 10.1002/ejoc.201800585] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Affiliation(s)
- David Just
- Institute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences; Flemingovo nám. 2 166 10 Prague 6 Czech Republic
| | - Daniel Hernandez-Guerra
- Institute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences; Flemingovo nám. 2 166 10 Prague 6 Czech Republic
| | - Susanne Kritsch
- Fachbereich Chemie; Technische Universität Braunschweig; Hagenring 30 38106 Braunschweig Germany
| | - Radek Pohl
- Institute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences; Flemingovo nám. 2 166 10 Prague 6 Czech Republic
| | - Ivana Císařová
- Department of Inorganic Chemistry; Faculty of Science; Charles University; Hlavova 2030/8 128 43 Prague 2 Czech Republic
| | - Peter G. Jones
- Fachbereich Chemie; Technische Universität Braunschweig; Hagenring 30 38106 Braunschweig Germany
| | - Richard Mackman
- Gilead Sciences, Inc.; 333 Lakeside Drive 94404 Foster City CA USA
| | - Gina Bahador
- Gilead Sciences, Inc.; 333 Lakeside Drive 94404 Foster City CA USA
| | - Ullrich Jahn
- Institute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences; Flemingovo nám. 2 166 10 Prague 6 Czech Republic
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Luo J, Xie C, Zhang Y, Huang SH, Zhu L, Hong R. Total syntheses of melinonine-E and strychnoxanthine: Evolution of the synthetic strategy enabled by novel method development. Tetrahedron 2018. [DOI: 10.1016/j.tet.2018.08.015] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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Affiliation(s)
- Marta Meazza
- Faculty of Natural and Environmental Sciences; University of Southampton; University Road SO17 1BJ UK
| | - Xavier Companyó
- Dipartimento di Scienze Chimiche; University of Padua; via Marzolo 1 35131 Padua Italy
| | - Ramon Rios
- Faculty of Natural and Environmental Sciences; University of Southampton; University Road SO17 1BJ UK
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Li H, Zhu S, Zheng G. Promiscuous (+)-γ-lactamase activity of an amidase from nitrile hydratase pathway for efficient synthesis of carbocyclic nucleosides intermediate. Bioorg Med Chem Lett 2018; 28:1071-1076. [DOI: 10.1016/j.bmcl.2018.02.019] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/21/2017] [Revised: 02/04/2018] [Accepted: 02/09/2018] [Indexed: 11/17/2022]
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39
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Benedikter MJ, Frater G, Buchmeiser MR. Regio- and Stereoselective Ring-Opening Metathesis Polymerization of Enantiomerically Pure Vince Lactam. Macromolecules 2018. [DOI: 10.1021/acs.macromol.8b00318] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]
Affiliation(s)
- Mathis J. Benedikter
- Institute of Polymer Chemistry, University of Stuttgart, Pfaffenwaldring 55, D-70569 Stuttgart, Germany
| | - Georg Frater
- XiMo AG, Altsagenstr. 3, CH-6048 Horw/Lucerne, Switzerland
| | - Michael R. Buchmeiser
- Institute of Polymer Chemistry, University of Stuttgart, Pfaffenwaldring 55, D-70569 Stuttgart, Germany
- German Institutes
of Textile and Fiber Research (DITF) Denkendorf, Körschtalstr. 26, D-73770 Denkendorf, Germany
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40
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Karlsson S, Cornwall P, Cruz A, Pontén F, Fridén-Saxin M, Turner A. Diastereoselective 1,4-Conjugate Addition of Alkyl Cuprates to Methyl Cyclopent-1-enecarboxylates. Org Process Res Dev 2018. [DOI: 10.1021/acs.oprd.7b00374] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Staffan Karlsson
- Early Chemical Development, Pharmaceutical Sciences, IMED Biotech Unit, AstraZeneca Gothenburg, SE-431 83 Mölndal, Sweden
| | - Philip Cornwall
- Early Chemical Development, Pharmaceutical Sciences, IMED Biotech Unit, AstraZeneca, Macclesfield SK10 2NA, United Kingdom
| | - Angéle Cruz
- Early Chemical Development, Pharmaceutical Sciences, IMED Biotech Unit, AstraZeneca Gothenburg, SE-431 83 Mölndal, Sweden
| | - Fritiof Pontén
- Early Chemical Development, Pharmaceutical Sciences, IMED Biotech Unit, AstraZeneca Gothenburg, SE-431 83 Mölndal, Sweden
| | - Maria Fridén-Saxin
- Medicinal Chemistry, Respiratory, Inflammation and Autoimmunity, IMED Biotech Unit, AstraZeneca Gothenburg, SE-431 83 Mölndal, Sweden
| | - Andrew Turner
- Early Chemical Development, Pharmaceutical Sciences, IMED Biotech Unit, AstraZeneca, Macclesfield SK10 2NA, United Kingdom
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41
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Li H, Zheng G, Zhu S. Construction of an organelle-like nanodevice via supramolecular self-assembly for robust biocatalysts. Microb Cell Fact 2018; 17:26. [PMID: 29458431 PMCID: PMC5819227 DOI: 10.1186/s12934-018-0873-3] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/26/2017] [Accepted: 02/09/2018] [Indexed: 11/13/2022] Open
Abstract
Background When using the microbial cell factories for green manufacturing, several important issues need to be addressed such as how to maintain the stability of biocatalysts used in the bioprocess and how to improve the synthetic efficiency of the biological system. One strategy widely used during natural evolution is the creation of organelles which can be used for regional control. This kind of compartmentalization strategy has inspired the design of artificial organelle-like nanodevice for synthetic biology and “green chemistry”. Results Mimicking the natural concept of functional compartments, here we show that the engineered thermostable ketohydroxyglutarate aldolase from Thermotoga maritima could be developed as a general platform for nanoreactor design via supramolecular self-assembly. An industrial biocatalyst-(+)-γ-lactamase was selected as a model catalyst and successful encapsulated in the nanoreactor with high copies. These nanomaterials could easily be synthesized by Escherichia coli by heterologous expression and subsequently self-assembles into the target organelle-like nanoreactors both in vivo and in vitro. By probing their structural characteristics via transmission electronic microscopy and their catalytic activity under diverse conditions, we proved that these nanoreactors could confer a significant benefit to the cargo proteins. The encapsulated protein exhibits significantly improved stability under conditions such as in the presence of organic solvent or proteases, and shows better substrate tolerance than free enzyme. Conclusions Our biodesign strategy provides new methods to develop new catalytically active protein-nanoreactors and could easily be applied into other biocatalysts. These artificial organelles could have widely application in sustainable catalysis, synthetic biology and could significantly improve the performance of microbial cell factories. Graphical Abstract ![]()
Electronic supplementary material The online version of this article (10.1186/s12934-018-0873-3) contains supplementary material, which is available to authorized users.
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Affiliation(s)
- Hongxia Li
- State Key Laboratory of Chemical Resources Engineering, Beijing University of Chemical Technology, 100029, Beijing, People's Republic of China
| | - Guojun Zheng
- State Key Laboratory of Chemical Resources Engineering, Beijing University of Chemical Technology, 100029, Beijing, People's Republic of China.
| | - Shaozhou Zhu
- State Key Laboratory of Chemical Resources Engineering, Beijing University of Chemical Technology, 100029, Beijing, People's Republic of China.
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42
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Singh US, Mulamoottil VA, Chu CK. 2′-Fluoro-6′-methylene carbocyclic adenosine and its phosphoramidate prodrug: A novel anti-HBV agent, active against drug-resistant HBV mutants. Med Res Rev 2018; 38:977-1002. [DOI: 10.1002/med.21490] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/22/2017] [Revised: 01/04/2018] [Accepted: 01/12/2018] [Indexed: 12/12/2022]
Affiliation(s)
- Uma S. Singh
- Department of Pharmaceutical and Biomedical Sciences; University of Georgia; Athens GA USA
| | | | - Chung K. Chu
- Department of Pharmaceutical and Biomedical Sciences; University of Georgia; Athens GA USA
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43
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Abe T, Morita T, Yamada K. Radical Cyclizations of Aryl Bromides for Synthesis of Cyclopenta[b]indoles from Vince Lactam. HETEROCYCLES 2018. [DOI: 10.3987/com-17-s(t)15] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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44
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Halder J, Das D, Nanda S. A distinctive transformation based diversity oriented synthesis of small ring carbocycles and heterocycles from biocatalytically derived enantiopure α-substituted-β-hydroxyesters. Org Biomol Chem 2018; 16:2549-2575. [DOI: 10.1039/c8ob00233a] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
Abstract
A series of structurally novel small ring carbocyclic and heterocyclic molecules were accessed in an enantiopure fashion.
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Affiliation(s)
- Joydev Halder
- Department of Chemistry
- Indian Institute of Technology Kharagpur
- Kharagpur
- India
| | - Debabrata Das
- Department of Chemistry
- Indian Institute of Technology Kharagpur
- Kharagpur
- India
| | - Samik Nanda
- Department of Chemistry
- Indian Institute of Technology Kharagpur
- Kharagpur
- India
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45
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Engineering the Enantioselectivity and Thermostability of a (+)-γ-Lactamase from Microbacterium hydrocarbonoxydans for Kinetic Resolution of Vince Lactam (2-Azabicyclo[2.2.1]hept-5-en-3-one). Appl Environ Microbiol 2017; 84:AEM.01780-17. [PMID: 29054871 DOI: 10.1128/aem.01780-17] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/17/2017] [Accepted: 09/29/2017] [Indexed: 11/20/2022] Open
Abstract
To produce promising biocatalysts, natural enzymes often need to be engineered to increase their catalytic performance. In this study, the enantioselectivity and thermostability of a (+)-γ-lactamase from Microbacterium hydrocarbonoxydans as the catalyst in the kinetic resolution of Vince lactam (2-azabicyclo[2.2.1]hept-5-en-3-one) were improved. Enantiomerically pure (-)-Vince lactam is the key synthon in the synthesis of antiviral drugs, such as carbovir and abacavir, which are used to fight against HIV and hepatitis B virus. The work was initialized by using the combinatorial active-site saturation test strategy to engineer the enantioselectivity of the enzyme. The approach resulted in two mutants, Val54Ser and Val54Leu, which catalyzed the hydrolysis of Vince lactam to give (-)-Vince lactam, with 99.2% (enantiomeric ratio [E] > 200) enantiomeric excess (ee) and 99.5% ee (E > 200), respectively. To improve the thermostability of the enzyme, 11 residues with high temperature factors (B-factors) calculated by B-FITTER or high root mean square fluctuation (RMSF) values from the molecular dynamics simulation were selected. Six mutants with increased thermostability were obtained. Finally, the mutants generated with improved enantioselectivity and mutants evolved for enhanced thermostability were combined. Several variants showing (+)-selectivity (E value > 200) and improved thermostability were observed. These engineered enzymes are good candidates to serve as enantioselective catalysts for the preparation of enantiomerically pure Vince lactam.IMPORTANCE Enzymatic kinetic resolution of the racemic Vince lactam using (+)-γ-lactamase is the most often utilized means of resolving the enantiomers for the preparation of carbocyclic nucleoside compounds. The efficiency of the native enzymes could be improved by using protein engineering methods, such as directed evolution and rational design. In our study, two properties (enantioselectivity and thermostability) of a γ-lactamase identified from Microbacterium hydrocarbonoxydans were tackled using a semirational design. The protein engineering was initialized by combinatorial active-site saturation test to improve the enantioselectivity. At the same time, two strategies were applied to identify mutation candidates to enhance the thermostability based on calculations from both a static (B-FITTER based on the crystal structure) and a dynamic (root mean square fluctuation [RMSF] values based on molecular dynamics simulations) way. After combining the mutants, we successfully obtained the final mutants showing better properties in both properties. The engineered (+)-lactamase could be a candidate for the preparation of (-)-Vince lactam.
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Zhang Z, Gao X, Yu H, Bi J, Zhang G. Tandem Oxidative α-Hydroxylation/β-Acetalization Reaction of β-Ketoamides and Its Applications. ACS OMEGA 2017; 2:7746-7754. [PMID: 31457331 PMCID: PMC6645376 DOI: 10.1021/acsomega.7b01526] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/14/2017] [Accepted: 10/30/2017] [Indexed: 06/10/2023]
Abstract
A tandem oxidative α-hydroxylation/β-acetalization reaction of β-ketoamides was developed in the presence of PIDA and NaOH. This reaction proceeded at 25 °C in the absence of a metal catalyst to provide 2-hydroxy-3,3-dimethoxy-N-substituted butanamides in good to excellent yields from readily available starting materials. The application of this chemistry to the construction of α-hydroxy-β-ketoamides and quinolinones was also described.
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Affiliation(s)
- Zhiguo Zhang
- Key
Laboratory of Green Chemical Media and Reactions, Ministry of Education,
School of Chemistry and Chemical Engineering, Henan Key Laboratory
of Organic Functional Molecule and Drug Innovation, Henan Normal University, 46# East of Construction Road, Xinxiang, Henan 453007, China
- Jilin
Province Key Laboratory of Organic Functional Molecular Design &
Synthesis, Northeast Normal University, Changchun, Jilin 130024, China
| | - Xiaolong Gao
- Key
Laboratory of Green Chemical Media and Reactions, Ministry of Education,
School of Chemistry and Chemical Engineering, Henan Key Laboratory
of Organic Functional Molecule and Drug Innovation, Henan Normal University, 46# East of Construction Road, Xinxiang, Henan 453007, China
| | - Haifeng Yu
- School
of Chemistry and Life Science, Anshan Normal
University, 33# Ping
An Street, Tiedong District, Anshan, Liaoning 114007, China
| | - Jingjing Bi
- Key
Laboratory of Green Chemical Media and Reactions, Ministry of Education,
School of Chemistry and Chemical Engineering, Henan Key Laboratory
of Organic Functional Molecule and Drug Innovation, Henan Normal University, 46# East of Construction Road, Xinxiang, Henan 453007, China
| | - Guisheng Zhang
- Key
Laboratory of Green Chemical Media and Reactions, Ministry of Education,
School of Chemistry and Chemical Engineering, Henan Key Laboratory
of Organic Functional Molecule and Drug Innovation, Henan Normal University, 46# East of Construction Road, Xinxiang, Henan 453007, China
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47
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Zhan Y, Liu T, Ren J, Wang Z. Lewis Acid-Catalyzed Intramolecular [3+2] Cross-Cycloaddition of Aziridine 2,2-Diesters with Conjugated Dienes for Construction of Aza-[n
.2.1] Skeletons. Chemistry 2017; 23:17862-17866. [DOI: 10.1002/chem.201704695] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/04/2017] [Indexed: 12/13/2022]
Affiliation(s)
- Yizhou Zhan
- State Key Laboratory of Elemento-Organic Chemistry; Institute of Elemento-Organic Chemistry; College of Chemistry; Nankai University; 94 Weijin Road Tianjin 300071 China
| | - Tao Liu
- State Key Laboratory of Elemento-Organic Chemistry; Institute of Elemento-Organic Chemistry; College of Chemistry; Nankai University; 94 Weijin Road Tianjin 300071 China
| | - Jun Ren
- State Key Laboratory of Elemento-Organic Chemistry; Institute of Elemento-Organic Chemistry; College of Chemistry; Nankai University; 94 Weijin Road Tianjin 300071 China
| | - Zhongwen Wang
- State Key Laboratory of Elemento-Organic Chemistry; Institute of Elemento-Organic Chemistry; College of Chemistry; Nankai University; 94 Weijin Road Tianjin 300071 China
- Collaborative Innovation Center of Chemical Science and Engineering; Nankai University; 94 Weijin Road Tianjin 300071 China
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48
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Vijayan A, Jumaila CU, Radhakrishnan KV. Rhodium(III)-Catalyzed C−H Activation of O
-Acetyl Ketoximes/N
-Methoxybenzamides toward the Synthesis of Isoquinoline/Isoquinolone-Fused Bicycles. ASIAN J ORG CHEM 2017. [DOI: 10.1002/ajoc.201700377] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
Affiliation(s)
- Ajesh Vijayan
- Academy of Scientific and Innovative Research (AcSIR); CSIR-NIIST; Thiruvananthapuram 695019 India
- Organic chemistry section; CSIR-National Institute for Interdisciplinary Science and Technology; Thiruvananthapuram 695019 India
| | - Choorappulan Ummu Jumaila
- Organic chemistry section; CSIR-National Institute for Interdisciplinary Science and Technology; Thiruvananthapuram 695019 India
| | - Kokkuvayil Vasu Radhakrishnan
- Academy of Scientific and Innovative Research (AcSIR); CSIR-NIIST; Thiruvananthapuram 695019 India
- Organic chemistry section; CSIR-National Institute for Interdisciplinary Science and Technology; Thiruvananthapuram 695019 India
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49
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Vijayan A, Jumaila CU, Baiju TV, Radhakrishnan KV. Palladium-Catalyzed Cross-Coupling of Aryl Iodides with Heterobicyclic Olefins: Access to Hydroarylated and Heteroannulated Motifs. ChemistrySelect 2017. [DOI: 10.1002/slct.201701152] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/15/2023]
Affiliation(s)
- Ajesh Vijayan
- Academy of Scientific and Innovative Research (AcSIR); CSIR-NIIST; Thiruvananthapuram-695019 India
- Organic chemistry section; CSIR-National Institute for Interdisciplinary Science and Technology; Thiruvananthapuram-695019 India
| | - Choorappulan Ummu Jumaila
- Organic chemistry section; CSIR-National Institute for Interdisciplinary Science and Technology; Thiruvananthapuram-695019 India
| | - Thekke Veettil Baiju
- Academy of Scientific and Innovative Research (AcSIR); CSIR-NIIST; Thiruvananthapuram-695019 India
- Organic chemistry section; CSIR-National Institute for Interdisciplinary Science and Technology; Thiruvananthapuram-695019 India
| | - Kokkuvayil Vasu Radhakrishnan
- Academy of Scientific and Innovative Research (AcSIR); CSIR-NIIST; Thiruvananthapuram-695019 India
- Organic chemistry section; CSIR-National Institute for Interdisciplinary Science and Technology; Thiruvananthapuram-695019 India
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Roy T, Brandt P, Wetzel A, Bergman J, Brånalt J, Sävmarker J, Larhed M. Selective Synthesis of Spirooxindoles by an Intramolecular Heck-Mizoroki Reaction. Org Lett 2017; 19:2738-2741. [PMID: 28471686 DOI: 10.1021/acs.orglett.7b01094] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
We report a highly diastereoselective synthesis of cyclopentene-spirooxindole derivatives via an intramolecular Heck-Mizoroki reaction using aryl bromides as precursors. The reactions were performed under dry conditions or in a DMF-water system. This protocol can be useful to introduce several functionalities to the aromatic nucleus of the spirooxindoles. DFT calculations were performed to rationalize the high antiselectivity. A functionalized spiroproduct was transformed into a cyclic amino acid derivative.
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Affiliation(s)
- Tamal Roy
- Department of Medicinal Chemistry, BMC, Uppsala University , Box 574, SE-751 23 Uppsala, Sweden
| | - Peter Brandt
- Department of Medicinal Chemistry, BMC, Uppsala University , Box 574, SE-751 23 Uppsala, Sweden
| | - Alexander Wetzel
- Department of Medicinal Chemistry, Cardiovascular and Metabolic Diseases, Innovative Medicines and Early Development Biotech Unit, AstraZeneca , Pepparedsleden 1, Mölndal 431 83, Sweden
| | - Joakim Bergman
- Department of Medicinal Chemistry, Cardiovascular and Metabolic Diseases, Innovative Medicines and Early Development Biotech Unit, AstraZeneca , Pepparedsleden 1, Mölndal 431 83, Sweden
| | - Jonas Brånalt
- Department of Medicinal Chemistry, Cardiovascular and Metabolic Diseases, Innovative Medicines and Early Development Biotech Unit, AstraZeneca , Pepparedsleden 1, Mölndal 431 83, Sweden
| | - Jonas Sävmarker
- The Beijer Laboratory, Department of Medicinal Chemistry, BMC, Uppsala University , Box 574, SE-751 23 Uppsala, Sweden
| | - Mats Larhed
- Department of Medicinal Chemistry, Science for Life Laboratory, BMC, Uppsala University , Box 574, SE-751 23 Uppsala, Sweden
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