Microbial metabolism and community structure in response to bioelectrochemically enhanced remediation of petroleum hydrocarbon-contaminated soil

Review on biochar as a sustainable green resource for the rehabilitation of petroleum hydrocarbon-contaminated soil

Petroleum pollution is one of the primary threats to the environment and public health. Therefore, it is essential to create new strategies and enhance current ones. The process of biological reclamation, which utilizes a biological agent to eliminate harmful substances from polluted soil, has drawn much interest. Biochars are inexpensive, environmentally beneficial carbon compounds extensively employed to remove petroleum hydrocarbons from the environment. Biochar has demonstrated an excellent capability to remediate soil pollutants because of its abundant supply of the required raw materials, sustainability, affordability, high efficacy, substantial specific surface area, and desired physical-chemical surface characteristics. This paper reviews biochar's methods, effectiveness, and possible toxic effects on the natural environment, amended biochar, and their integration with other remediating materials towards sustainable remediation of petroleum-polluted soil environments. Efforts are being undertaken to enhance the effectiveness of biochar in the hydrocarbon-based rehabilitation approach by altering its characteristics. Additionally, the adsorption, biodegradability, chemical breakdown, and regenerative facets of biochar amendment and combined usage culminated in augmenting the remedial effectiveness. Lastly, several shortcomings of the prevailing methods and prospective directions were provided to overcome the constraints in tailored biochar studies for long-term performance stability and ecological sustainability towards restoring petroleum hydrocarbon adultered soil environments.

Dynamic membrane filtration accelerates electroactive biofilms in bioelectrochemical systems

Bioelectrochemical systems (BES) have emerged as a dual-function technology for treating wastewater and recovering energy. A vital element of BES is the rapid formation and maintenance of electroactive biofilms (EABs). Previous attempts to accelerate EAB formation and improve electroactivities focused on enhancing the bacterial adhesion process while neglecting the rate-limiting step of the bacterial transport process. Here, we introduce membrane filtration into BES, establishing a dynamic membrane filtration system that enhances overall performance. We observed that optimal membrane flux considerably reduced the startup time for EAB formation. Specifically, EABs established under a 25 L m-2 h-1 flux (EAB25 LMH) had a formation time of 43.8 ± 1.3 h, notably faster than the 51.4 ± 1.6 h in the static state (EAB0 LMH). Additionally, EAB25 LMH exhibited a significant increase in maximum current density, approximately 2.2 times higher than EAB0 LMH. Pearson correlation analysis indicated a positive relationship between current densities and biomass quantities and an inverse correlation with startup time. Microbial analysis revealed two critical findings: (i) variations in maximum current densities across different filtration conditions were associated with redox-active substances and biomass accumulation, and (ii) the incorporation of a filtration process in EAB formation enhanced the proportion of viable cells and encouraged a more diverse range of electroactive bacteria. Moreover, the novel electroactive membrane demonstrated sustained current production and effective solid-liquid separation during prolonged operation, indicating its potential as a viable alternative in membrane-based systems. This approach not only provides a new operational model for BES but also holds promise for expanding its application in future wastewater treatment solutions.

Metagenomics revealing biomolecular insights into the enhanced toluene removal and electricity generation in PANI@CNT bioanode

Microbial fuel cells (MFCs) have significant potential for environmental remediation and energy recycling directly from refractory aromatic hydrocarbons. To boost the capacities of toluene removal and the electricity production in MFCs, this study constructed a polyaniline@carbon nanotube (PANI@CNT) bioanode with a three-dimensional framework structure. Compared with the control bioanode based on graphite sheet, the PANI@CNT bioanode increased the output voltage and toluene degradation kinetics by 2.27-fold and 1.40-fold to 0.399 V and 0.60 h-1, respectively. Metagenomic analysis revealed that the PANI@CNT bioanode promoted the selective enrichment of Pseudomonas, with the dual functions of degrading toluene and generating exogenous electrons. Additionally, compelling genomic evidence elucidating the relationship between functional genes and microorganisms was found. It was interesting that the genes derived from Pseudomonas related to extracellular electron transfer, tricarboxylic acid cycle, and toluene degradation were upregulated due to the existence of PANI@CNT. This study provided biomolecular insights into key genes and related microorganisms that effectively facilitated the organic pollutant degradation and energy recovery in MFCs, offering a novel alternative for high-performance bioanode.

Fulvic acid more facilitated the soil electron transfer than humic acid

Humus substances (HSs) participate in extracellular electron transfer (EET), which is unclear in heterogeneous soil. Here, a microbial electrochemical system (MES) was constructed to determine the effect of HSs, including humic acid, humin and fulvic acid, on soil electron transfer. The results showed that fulvic acid led to the optimal electron transfer efficiency in soil, as evidenced by the highest accumulated charges and removal of total petroleum hydrocarbons after 140 days, with increases of 161% and 30%, respectively, compared with those of the control. However, the performance of MES with the addition of humic acid and humin was comparable to that of the control. Fulvic acid amendment enhanced the carboxyl content and oxidative state of dissolved organic matter, endowing a better electron transfer capacity. Additionally, the presence of fulvic acid induced an increase in the abundance of electroactive bacteria and organic degraders, extracellular polymeric substances and functional enzymes such as cytochrome c and NADH synthesis, and the expression of m tr C gene, which is responsible for EET enhancement in soil. Overall, this study reveals the mechanism by which HSs stimulate soil electron transfer at the physicochemical and biological levels and provides basic support for the application of bioelectrochemical technology in soil.

A novel mycelial pellet applied to remove polycyclic aromatic hydrocarbons: High adsorption performance & its mechanisms

Mycelial pellets formed by Penicillium thomii ZJJ were applied as efficient biosorbents for the removal of polycyclic aromatic hydrocarbons (PAHs), which are a type of ubiquitous harmful hydrophobic pollutants. The live mycelial pellets were able to remove 93.48 % of pyrene at a concentration of 100 mg/L within 48 h, demonstrating a maximum adsorption capacity of 285.63 mg/g. Meanwhile, the heat-killed one also achieved a removal rate of 65.01 %. Among the six typical PAHs (pyrene, phenanthrene, fluorene, anthracene, fluoranthene, benzo[a]pyrene), the mycelial pellets preferentially adsorbed the high molecular weight PAHs, which also have higher toxicity, resulting in higher removal efficiency. The experimental results showed that the biosorption of mycelial pellets was mainly a spontaneous physical adsorption process that occurred as a monolayer on a homogeneous surface, with mass transfer being the key rate-limiting step. The main adsorption sites on the surface of mycelia were carboxyl and N-containing groups. Extracellular polymeric substances (EPS) produced by mycelial pellets could enhance adsorption, and its coupling with dead mycelia could achieve basically the same removal effect to that of living one. It can be concluded that biosorption by mycelial pellets occurred due to the influence of electrostatic and hydrophobic interactions, consisting of five steps. Furthermore, the potential applicability of mycelial pellets has been investigated considering diverse factors. The mycelia showed high environmental tolerance, which could effectively remove pyrene across a wide range of pH and salt concentration. And pellets diameters and humic acid concentration had a significant effect on microbial adsorption effect. Based on a cost-effectiveness analysis, mycelium pellets were found to be a low-cost adsorbent. The research outcomes facilitate a thorough comprehension of the adsorption process of pyrene by mycelial pellets and their relevant applications, proposing a cost-effective method without potential environmental issues (heat-killed mycelial pellets plus EPS) to removal PAHs.

Biochar-based materials as remediation strategy in petroleum hydrocarbon-contaminated soil and water: Performances, mechanisms, and environmental impact

Petroleum contamination is considered as a major risk to the health of humans and environment. Biochars as low-cost and eco-friendly carbon materials, have been widely used for the removal of petroleum hydrocarbon in the environment. The purpose of this paper is to review the performance, mechanisms, and potential environmental toxicity of biochar, modified biochar and its integration use with other materials in petroleum contaminated soil and water. Specifically, the use of biochar in oil-contaminated water and soil as well as the factors that could influence the removal ability of biochar were systematically evaluated. In addition, the modification and integrated use of biochar for improving the removal efficiency were summarized from the aspects of sorption, biodegradation, chemical degradation, and reusability. Moreover, the functional impacts and associated ecotoxicity of pristine and modified biochars in various environments were demonstrated. Finally, some shortcoming of current approaches, and future research needs were provided for the future direction and challenges of modified biochar research. Overall, this paper gain insight into biochar application in petroleum remediation from the perspectives of performance enhancement and environmental sustainability.

Bioaugmentation and vermicompost facilitated the hydrocarbon bioremediation: scaling up from lab to field for petroleum-contaminated soils

The biodegradation of total petroleum hydrocarbon (TPH) in soil is very challenging due to the complex recalcitrant nature of hydrocarbon, hydrophobicity, indigenous microbial adaptation and competition, and harsh environmental conditions. This work further confirmed that limited natural attenuation of petroleum hydrocarbons (TPHs) (15% removal) necessitates efficient bioremediation strategies. Hence, a scaling-up experiment for testing and optimizing the use of biopiles for bioremediation of TPH polluted soils was conducted with three 500-kg pilots of polluted soil, and respective treatments were implemented: including control soil (CT), bioaugmentation and vermicompost treatment (BAVC), and a combined application of BAVC along with bioelectrochemical snorkels (BESBAVC), all maintained at 40% field capacity. This study identified that at pilot scale level, a successful application of BAVC treatment can achieve 90.3% TPH removal after 90 days. BAVC's effectiveness stemmed from synergistic mechanisms. Introduced microbial consortia were capable of TPH degradation, while vermicompost provided essential nutrients, enhanced aeration, and, potentially, acted as a biosorbent. Hence, it can be concluded that the combined application of BAVC significantly enhances TPH removal compared to natural attenuation. While the combined application of a bioelectrochemical snorkel (BES) with BAVC also showed a significant TPH removal, it did not differ statistically from the individual application of BAVC, under applied conditions. Further research is needed to optimize BES integration with BAVC for broader applicability. This study demonstrates BAVC as a scalable and mechanistically sound approach for TPH bioremediation in soil.

Application of biochar on soil bioelectrochemical remediation: behind roles, progress, and potential

Bioelectrochemical systems (BESs) that combine electrochemistry with biological methods have gained attention in the remediation of polluted environments, including wastewater, sludge, sediments, and soils. The most attractive advantage of BESs is that the solid electrode is used as an inexhaustible electron acceptor or donor, and biocurrent directly converted from organics can afford the reaction energy of contaminant breakdown, crossing the internal energy barrier of endothermic degradation, which achieves a continuous biodegradation process without the simultaneous use of exogenetic chemicals and bioelectricity recovery. However, soil BESs are hindered by expensive electrode materials, difficult pollutant and electron transfer, low microbial competitive activity, and biocompatibility in contamination remediation. Fortunately, introducing biochar into soil BESs could reveal a high potential in addressing these BES inadequacies. The characteristics of biochar, e.g., conductivity, transferability, high specific surface area, high porosity, large functional groups, and biocompatibility, can improve the performance of soil BESs. In fact, biochar not only carries electrons but also transfers nutrients, pollutants, and even bacteria by facilitating transmission in the bioelectric field of BESs. Consequently, the abilities of biochar make for better functionality of BESs. This review collates information on the roles, application, and progress of biochar in soil BESs, and future prospects are given. It is beneficial for environmental researchers and engineers to extend BES application in environmental remediation and to assist the progress of carbon sequestration and emission reduction based on the inertia of biochar and the blocking of electron flow to form methane.

Harnessing Pseudomonas putida in bioelectrochemical systems

Bioelectrochemical systems (BESs), a group of promising integrated systems that combine the advantages of biotechnology and electrochemical techniques, offer new opportunities to address environmental and energy challenges. Exoelectrogens capable of extracellular electron transfer (EET) are the critical factor enabling electrocatalytic activity in BESs. Pseudomonas putida, an aerobe widely used in environmental bioremediation, the biosynthesis of valuable chemicals, and energy bioproduction, has attracted much attention due to its unique application potential in BESs. This review provides a comprehensive understanding of the working principles, key factors, and applications of BESs using P. putida as the exoelectrogen. The challenges and perspectives for the development of BESs with P. putida as the exoelectrogen are also proposed and discussed.

Microbial electrochemical system: an emerging technology for remediation of polycyclic aromatic hydrocarbons from soil and sediments

Worldwide industrialization and other human activities have led to a frightening stage of release of hazardous, highly persistent, toxic, insoluble, strongly adsorbed to the soil and high molecular weight ubiquitous polycyclic aromatic hydrocarbons (PAHs) in soils and sediments. The various conventional remediation methods are being used to remediate PAHs with certain drawbacks. Time taking process, high expenditure, excessive quantities of sludge generation, and various chemical requirements do not only make these methods outdated but produce yet much resistant and toxic intermediate metabolites. These disadvantages may be overcome by using a microbial electrochemical system (MES), a booming technology in the field of bioremediation. MES is a green remediation approach that is regulated by electrochemically active microorganisms at the electrode in the system. The key advantage of the system over the conventional methods is it does not involve any additional chemicals, takes less time, and generates minimal sludge or waste during the remediation of PAHs in soils. However, a comprehensive review of the MES towards bioremediation of PAHs adsorbed in soil and sediment is still lacking. Therefore, the present review intended to summarize the recent information on PAHs bioremediation, application, risks, benefits, and challenges based on sediment microbial fuel cell and microbial fuel cell to remediate mount-up industrial sludge, soil, and sediment rich in PAHs. Additionally, bio-electrochemically active microbes, mechanisms, and future perspectives of MES have been discussed.

Key genes of electron transfer, the nitrogen cycle and tetracycline removal in bioelectrochemical systems

BACKGROUND

Soil microbial fuel cells (MFCs) can remove antibiotics and antibiotic resistance genes (ARGs) simultaneously, but their removal mechanism is unclear. In this study, metagenomic analysis was employed to reveal the functional genes involved in degradation, electron transfer and the nitrogen cycle in the soil MFC.

RESULTS

The results showed that the soil MFC effectively removed tetracycline in the overlapping area of the cathode and anode, which was 64% higher than that of the control. The ARGs abundance increased by 14% after tetracycline was added (54% of the amplified ARGs belonged to efflux pump genes), while the abundance decreased by 17% in the soil MFC. Five potential degraders of tetracycline were identified, especially the species Phenylobacterium zucineum, which could secrete the 4-hydroxyacetophenone monooxygenase encoded by EC 1.14.13.84 to catalyse deacylation or decarboxylation. Bacillus, Geobacter, Anaerolinea, Gemmatirosa kalamazoonesis and Steroidobacter denitrificans since ubiquinone reductase (encoded by EC 1.6.5.3), succinate dehydrogenase (EC 1.3.5.1), Coenzyme Q-cytochrome c reductase (EC 1.10.2.2), cytochrome-c oxidase (EC 1.9.3.1) and electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1) served as complexes I, II, III, IV and ubiquinone, respectively, to accelerate electron transfer. Additionally, nitrogen metabolism-related gene abundance increased by 16% to support the microbial efficacy in the soil MFC, and especially EC 1.7.5.1, and coding the mutual conversion between nitrite and nitrate was obviously improved.

CONCLUSIONS

The soil MFC promoted functional bacterial growth, increased functional gene abundance (including nitrogen cycling, electron transfer, and biodegradation), and facilitated antibiotic and ARG removal. Therefore, soil MFCs have expansive prospects in the remediation of antibiotic-contaminated soil. This study provides insight into the biodegradation mechanism at the gene level in soil bioelectrochemical remediation.

Effect of electric fields strength on soil factors and microorganisms during electro-bioremediation of benzo[a]pyrene-contaminated soil

Electro-bioremediation is a promising technology for remediating soils contaminated with polycyclic aromatic hydrocarbons (PAHs). However, the resulting electrokinetic effects and electrochemical reactions may inevitably cause changes in soil factors and microorganism, thereby reducing the remediation efficiency. To avoid negative effect of electric field on soil and microbes and maximize microbial degradability, it is necessary to select a suitable electric field. In this study, artificial benzo [a]pyrene (BaP)-contaminated soil was selected as the object of remediation. Changes in soil factors and microorganisms were investigated under the voltage of 1.0, 2.0, and 2.5 V cm-1 using chemical analysis, real-time PCR, and high-throughput sequencing. The results revealed noticeable changes in soil factors (pH, moisture, electrical conductivity [EC], and BaP concentration) and microbes (PAHs ring-hydroxylating dioxygenase [PAHs-RHDα] gene and bacterial community) after the application of electric field. The degree of change was related to the electric field strength, with a suitable strength being more conducive to BaP removal. At 70 d, the highest mean extent of BaP removal and PAHs-RHDα gene copies were observed in EK2.0 + BIO, reaching 3.37 and 109.62 times those in BIO, respectively, indicating that the voltage of 2.0 V cm-1 was the most suitable for soil microbial growth and metabolism. Changes in soil factors caused by electric fields can affect microbial activity and community composition. Redundancy analysis revealed that soil pH and moisture had the most significant effects on microbial community composition (P < 0.05). The purpose of this study was to determine the appropriate electric field that could be used for electro-bioremediation of PAH-contaminated soil by evaluating the effects of electric fields on soil factors and microbial communities. This study also provides a reference for efficiency enhancement and successful application of electro-bioremediation of soil contaminated with PAHs.

Influence of carbon-based cathodes on biofilm composition and electrochemical performance in soil microbial fuel cells

Increasing energy demands and environmental pollution concerns press for sustainable and environmentally friendly technologies. Soil microbial fuel cell (SMFC) technology has great potential for carbon-neutral bioenergy generation and self-powered electrochemical bioremediation. In this study, an in-depth assessment on the effect of several carbon-based cathode materials on the electrochemical performance of SMFCs is provided for the first time. An innovative carbon nanofibers electrode doped with Fe (CNFFe) is used as cathode material in membrane-less SMFCs, and the performance of the resulting device is compared with SMFCs implementing either Pt-doped carbon cloth (PtC), carbon cloth, or graphite felt (GF) as the cathode. Electrochemical analyses are integrated with microbial analyses to assess the impact on both electrogenesis and microbial composition of the anodic and cathodic biofilm. The results show that CNFFe and PtC generate very stable performances, with a peak power density (with respect to the cathode geometric area) of 25.5 and 30.4 mW m^-2, respectively. The best electrochemical performance was obtained with GF, with a peak power density of 87.3 mW m^-2. Taxonomic profiling of the microbial communities revealed differences between anodic and cathodic communities. The anodes were predominantly enriched with Geobacter and Pseudomonas species, while cathodic communities were dominated by hydrogen-producing and hydrogenotrophic bacteria, indicating H₂ cycling as a possible electron transfer mechanism. The presence of nitrate-reducing bacteria, combined with the results of cyclic voltammograms, suggests microbial nitrate reduction occurred on GF cathodes. The results of this study can contribute to the development of effective SMFC design strategies for field implementation.

An overview of bioelectrokinetic and bioelectrochemical remediation of petroleum-contaminated soils

The global problem of petroleum contamination in soils seriously threatens environmental safety and human health. Current studies have successfully demonstrated the feasibility of bioelectrokinetic and bioelectrochemical remediation of petroleum-contaminated soils due to their easy implementation, environmental benignity, and enhanced removal efficiency compared to bioremediation. This paper reviewed recent progress and development associated with bioelectrokinetic and bioelectrochemical remediation of petroleum-contaminated soils. The working principles, removal efficiencies, affecting factors, and constraints of the two technologies were thoroughly summarized and discussed. The potentials, challenges, and future perspectives were also deliberated to shed light on how to overcome the barriers and realize widespread implementation on large scales of these two technologies.

Long-term comparison of the performance of biostimulation and phytoextraction in soil contaminated with diesel and heavy metals

The long-term remediation performance under the natural conditions is required to establish the appropriate remediation strategy for contaminated soil. The objective of this study was to compare the long-term remediation efficiency of biostimulation and phytoextraction in contaminated soil containing petroleum hydrocarbons (PHs) and heavy metals. Two types of contaminated soil (soil contaminated with diesel only and co-contaminated with diesel and heavy metals) were prepared. For the biostimulation treatments, the soil was amended with compost, whereas maize, a representative phytoremediation plant, was cultivated for the phytoextraction treatments. There was no significant difference in remediation performance of biostimulation and phytoextraction in the diesel-contaminated soil, in which the maximum total petroleum hydrocarbon (TPH) removability was 94-96% (p < 0.05). However, phytoextraction exhibited the higher removability for TPH and heavy metals than biostimulation in the co-contaminated soil. There was no considerable change in the TPH removal in biostimulation (16-25%), while phytoextraction showed a 75% of TPH removal rate in the co-contaminated soil. Additionally, no significant changes were observed in heavy metals concentration of biostimulation, whereas the removability of heavy metals was 33-63% in phytoextraction. Meanwhile, maize, which is a suitable plant for phytoextraction, showed a translocation factor (translocating efficiency from roots to shoots) value of >1. Correlation analysis revealed that soil properties (pH, water content, and organic content) negatively correlated with pollutants removal. Additionally, the soil bacterial communities were changed over the investigated period, and the types of pollutants exerted a significant influence on the bacterial community dynamics. This study performed a pilot-scale comparison of two types of biological remediation technologies under natural environmental conditions and provided information on changes in the bacterial community structures. This study can be useful for establishing appropriate biological remediation methods to restore soil contaminated with PHs and heavy metals.

Exogenous Electroactive Microbes Regulate Soil Geochemical Properties and Microbial Communities by Enhancing the Reduction and Transformation of Fe(III) Minerals

Electroactive microbes can conduct extracellular electron transfer and have the potential to be applied as a bioresource to regulate soil geochemical properties and microbial communities. In this study, we incubated Fe-limited and Fe-enriched farmland soil together with electroactive microbes for 30 days; both soils were incubated with electroactive microbes and a common iron mineral, ferrihydrite. Our results indicated that the exogenous electroactive microbes decreased soil pH, total organic carbon (TOC), and total nitrogen (TN) but increased soil conductivity and promoted Fe(III) reduction. The addition of electroactive microbes also changed the soil microbial community from Firmicutes-dominated to Proteobacteria-dominated. Moreover, the total number of detected microbial species in the soil decreased from over 700 to less than 500. Importantly, the coexistence of N-transforming bacteria, Fe(III)-reducing bacteria and methanogens was also observed with the addition of electroactive microbes in Fe-rich soil, indicating the accelerated interspecies electron transfer of functional microflora.

Biochar-Assisted Catalytic Pyrolysis of Oily Sludge to Attain Harmless Disposal and Residue Utilization for Soil Reclamation

Pyrolysis of oily sludge (OS) is a feasible technology to match the principle of reduction and recycling; however, it is difficult to confirm the feasible environmental destination and meet the corresponding requirements. Therefore, an integrated strategy of biochar-assisted catalytic pyrolysis (BCP) of OS and residue utilization for soil reclamation is investigated in this study. During the catalytic pyrolysis process, biochar as a catalyst intensifies the removal of recalcitrant petroleum hydrocarbons at the expense of liquid product yield. Concurrently, biochar as an adsorbent can inhibit the release of micromolecular gaseous pollutants (e.g. HCN, H₂S, and HCl) and stabilize heavy metals. Due to the assistance of biochar, pyrolysis reactions of OS are more likely to occur and require a lower temperature to achieve the same situation. During the soil reclamation process, the obtained residue as a soil amendment can not only provide a carbon source and mineral nutrients but can also improve the abundance and diversity of microbial communities. Thus, it facilitates the plant germination and the secondary removal of petroleum hydrocarbons. The integrated strategy of BCP of OS and residue utilization for soil reclamation is a promising management strategy, which is expected to realize the coordinated and benign disposal of more than one waste.

Enhanced carbon emission driven by the interaction between functional microbial community and hydrocarbons: An enlightenment for carbon cycle

Soil microbial communities are usually regarded as one of the key players in the global element cycling. Moreover, an important consequence of oil contamination altering the structure of microbial communities is likely to result in an increased carbon emission. However, understanding of the complex interactions between environmental factors and biological communities is clearly lagging behind. Here it showed that the flux of carbon emissions increased in oil-contaminated soils, up to 13.64 g C·(kg soil)^-1·h^-1. This phenomenon was mainly driven by the enrichment of rare degrading microorganisms (e.g., Methylosinus, Marinobacter, Pseudomonas, Alcanivorax, Yeosuana, Halomonas and Microbulbifer) in the aerobic layer, rather than the anaerobic layer, which is more conducive to methane formation. In addition, petroleum hydrocarbons and environmental factors are equally important in shaping the structure of microbial communities (the ecological stability) and functional traits (e.g., fatty acid metabolism, lipid metabolism and amino acid metabolism) due to the different ecological sensitivities of microorganisms. Thus, it can be believed that the variability of rare hydrocarbon degrading microorganisms is of greater concern than changes in dominant microorganisms in oil-contaminated soil. Undoubtedly, this study could reveal the unique characterization of bacterial communities that mediate carbon emission and provide evidence for understanding the conversion from carbon stores to carbon gas release in oil-contaminated soils.

Novel electro-assisted micro-aerobic cathode biological technology induces oxidative demethylation of N, N-dimethylformamide for efficient ammonification of refractory membrane-making wastewater

Recalcitrant and toxicological membrane-making wastewater displays negative impacts on environment, and this is difficult to treat efficiently using conventional hydrolytic acidification. In this study, a novel electro-assisted biological reactor with micro-aerobic cathode (EABR-MAC) was developed to improve the biodegradation and ammonification of N, N-dimethylformamide (DMF) in membrane-making wastewater, and the metabolic mechanism using metagenomic sequencing as comprehensively illustrated. The results showed that EABR-MAC significantly improved the ammonification of refractory organonitrogen and promoted DMF oxidative degradation by driving the electron transferred to the cathode. Additionally, the inhibition rates of oxygen uptake rate and nitrification in EABR-MAC were both lower under different cathode aeration frequency conditions. Microbial community analysis indicated that the functional fermentation bacteria and exoelectrogens, which were correlated with COD removal, ammonification, and detoxification, were significantly enriched upon electrostimulation, and the positive biological connections increased to form highly connected communities instead of competition. The functional genes revealed that EABR-MAC forcefully intervened with the metabolic pathway, so that DMF converted to formamide and ammonia by oxidative demethylation and formamide hydrolysis. The results of this study provide a promising strategy for efficient conversion of organonitrogen into ammonia nitrogen, and offer a new insight into the effects of electrostimulation on microbial metabolism.

Revealing the microbial mechanism of Fe0 and MnO2 mediated microbial fuel cell-anaerobic digestion coupling system and its energy flow distribution

Microbial fuel cell-anaerobic digestion (MFC-AD) is a new sludge treatment technology with multi-path energy recovery. In this study, Fe⁰ and MnO₂ with gradient concentration were added to investigate its effects on the sludge reduction, electrochemical performance, extracellular polymeric substances (EPS) of sludge, microbial community, electron distribution and energy flow of the MFC-AD system. Results showed that the highest sludge reduction 59% (49%), was obtained at 10 g/L Fe⁰ (5 g/L MnO₂) adding and its total energy recovery efficiency increased by 100% (71%) compare to the control. Different Fe⁰ and MnO₂ concentrations lead to different microbial mechanisms: at 10 g/L Fe⁰ or 5 g/L MnO₂, it prefers to promote extracellular electrons transfer, favoring the Geobacter, Shewanella and Acinetobacter enrichment, while at 5 g/L Fe⁰ or 0.5 g/L MnO₂ it plays a more important role in substrate metabolism of anaerobic digestion, with Clostridium, Roseomonas lacus, and Methylocystis enriched. Correspondingly, the electron quantity distribution from biomass to recovered energy ends (Current, CH₄ and VFAs), was influenced by Fe⁰ and MnO₂ concentration, indicating the controllability of the energy flow.

Influence of biocurrent self-generated by indigenous microorganisms on soil quality

The redox process driven by anaerobic respiration is a link between matter conversion and energy exchange in soil biogeochemistry. Microbial extracellular electron transfer forming biocurrents is a force in element cycling and community living in soil. However, the effect of indigenous microorganisms generating biocurrents on soil quality is unclear. We found that soil biocurrent showed little adverse influence on soil pH, cation exchange capacity, and available nitrogen, phosphorus and potassium and deblocked sequestered organic matter (29%). In addition, the bioelectric field derived from biocurrent obviously forced the migration of mineral elements, which was a supplement to the theory of water-salt transport, providing a new perspective on element transport. Moreover, the soil biocurrent directly regulated the availability of Ca and Fe (increase of 7-fold), indicating that electron transfer plays an important role in weathering and mineralization and thus pedogenesis. From a microbial ecology point of view, the soil bacterial richness and diversity were perfectly restored to their original state when the biocurrent stopped; including bacterial functions; although a temporary enrichment of certain species was observed. The above results provide new insights into the interactions between electron transfer and soil quality and confirm the safety of soil bioelectrochemical technology.

Insights into rhamnolipid amendment towards enhancing microbial electrochemical treatment of petroleum hydrocarbon contaminated soil

Environmental pollution by hydrophobic hydrocarbons is increasing, notably nowadays due to a large amount of industrial activity. Microbial electrochemical technologies (MET) are promising bio-based systems which can oxidize hydrophobic hydrocarbon pollutants and produce bioelectricity simultaneously. However, MET faces some issues in terms of soil remediation, including low mass transfer, limited electro-activity of anodes as electron acceptors, low bioavailability of hydrocarbons, and the limited activity of beneficial bacteria and inefficient electron transport. This study aims to investigate the role of the addition of rhamnolipid as an analyte solution to the MET to enhance the efficacy and concurrently solve the abovementioned issues. In this regard, a novel long chain of RL was produced by using low-cost carbon winery waste through non-pathogenic Burkholderia thailandensis E264 strains. Different doses of RL were tested, including 10, 50, and 100 mg/L. A maximum enhancement in the oxidation of hydrophobic hydrocarbons was found to be up to 72.5%, while the current density reached 9.5 Am-2 for the MET reactor having a dose of 100 mg/L. The biosurfactants induced a unique microbial enrichment associated with Geobacter, Desulfovibrio, Klebsiella, and Comamona on the anode surface, as well as Pseudomonas, Acinetobacter, and Franconibacter in soil MET, indicating the occurrence of a metabolic pathway in microbes working with the anode and soil bioelectrochemical remediation system. According to cyclic voltammetry analysis, redox peaks appeared, showing a minor shift in redox MET-biosurfactant compared to the bare MET system. Furthermore, the phytotoxicity of polluted soil to L. sativum seeds after and before MET remediation shows a decrease in phytotoxicity of 77.5% and 5% for MET-biosurfactant system and MET only, respectively. With MET as a tool, this study confirmed for the first time that novel long-chain RL produced from non-Pseudomonas bacteria could remarkably facilitate the degradation of petroleum hydrocarbon via extracellular electron transfer, which provides novel insights to understand the mechanisms of RL regulating petroleum hydrocarbon degradation.

Bioelectrochemical degradation of petroleum hydrocarbons: A critical review and future perspectives

As typical pollutants, petroleum hydrocarbons that are widely present in various environmental media such as soil, water, sediments, and air, seriously endanger living organisms and human health. In the meantime, as a green environmental technology that integrates pollutant removal and resource recovery, bioelectrochemical systems (BESs) have been extensively applied to the removal of petroleum hydrocarbons from the environment. This review introduces working principles of BESs, following which it discusses the different reactor structures, application progresses, and key optimization factors when treating water, sewage sludges, sediments, and soil. Furthermore, bibliometrics was first used in this field to analyze the evolution of knowledge structure and forecast future hot topics. The research focus has shifted from the early generation of bioelectric energy to exploring mechanisms of soil remediation and microbial metabolisms, which will be closely integrated in the future. Finally, the future prospects of this field are proposed. This review focuses on the research status of bioelectrochemical degradation of petroleum hydrocarbons and provides a scientific reference for subsequent research.

Effects of pyrene on the structure and metabolic function of soil microbial communities

The widely detected pyrene (PYR) is prone to accumulate and pose risks to the soil ecosystem. In this study, an aerobic closed microcosm was constructed to assess the effects of PYR at the environmental concentration (12.09 mg kg^-1) on the structure, interactions, and metabolism of carbon sources of soil microbial communities. The results found that half-life of PYR was 37 d and its aerobic biodegradation was mainly implemented by both Gram-negative and Gram-positive bacteria as revealed by the quantitative results. High-throughput sequencing based on 16 S rRNA and ITS genes showed that PYR exposure interfered more significantly with the diversity and abundance of the bacterial community than that of the fungal community. For bacteria, rare species were sensitive to PYR, while Gemmatimonadota, Gaiellales, and Planococcaceae involved in organic pollutants detoxification and degradation were tolerant of PYR stress. Co-occurrence network analysis demonstrated that PYR enhanced the intraspecific cooperation within the bacterial community and altered the patterns of trophic interaction in the fungal community. Furthermore, the keystone taxa and their topological roles were altered, potentially inducing functionality changes. Function annotation suggested PYR inhibited the nitrogen fixation and ammonia oxidation processes but stimulated methylotrophy and methanol oxidation, especially on day 7. For the metabolism, microbial communities accelerated the metabolism of nitrogenous carbon sources (e.g. amine) to meet the physiological needs under PYR stress. This study clarifies the impacts of PYR on the structure, metabolism, and potential N and C cycling functions of soil microbial communities, deepening the knowledge of the environmental risks of PYR.

Biodegradation of petroleum hydrocarbons in a weathered, unsaturated soil is inhibited by peroxide oxidants

Field-weathered crude oil-containing soils have a residual concentration of hydrocarbons with complex chemical structure, low solubility, and high viscosity, often poorly amenable to microbial degradation. Hydrogen peroxide (H₂O₂)-based oxidation can generate oxygenated compounds that are smaller and/or more soluble and thus increase petroleum hydrocarbon biodegradability. In this study, we assessed the efficacy of H₂O₂-based oxidation under unsaturated soil conditions to promote biodegradation in a field-contaminated and weathered soil containing high concentrations of total petroleum hydrocarbons (25200 mg TPH kg^-1) and total organic carbon (80900 mg TOC kg^-1). Microcosms amended with three doses of 48 g H₂O₂ kg^-1 soil (unactivated or Fe²⁺-activated) or 24 g sodium percarbonate kg^-1 soil and nutrients did not show substantial TPH changes during the experiment. However, 7.6-41.8% of the TOC concentration was removed. Furthermore, production of DOC was enhanced and highest in the microcosms with oxidants, with approximately 20-40-fold DOC increase by the end of incubation. In the absence of oxidants, biostimulation led to > 50% TPH removal in 42 days. Oxidants limited TPH biodegradation by diminishing the viable concentration of microorganisms, altering the composition of the soil microbial communities, and/or creating inhibitory conditions in soil. Study's findings underscore the importance of soil characteristics and petroleum hydrocarbon properties and inform on potential limitations of combined H₂O₂ oxidation and biodegradation in weathered soils.

Variation of bacterial community and alkane monooxygenase gene abundance in diesel n-alkane contaminated subsurface environment under seasonal water table fluctuation

n-Alkanes, the main component of diesel fuel, are common light non-aqueous phase liquids (LNAPLs) that threaten ecological security. The subsurface from vadose zone, through fluctuating zone, to saturated zone, is a critical multi-interface earth layer which significantly affects the biodegradation processes of n-alkanes. A pilot-scale diesel contaminated aquifer column experiment has been undertaken to investigate the variations of bacterial community and alkane monooxygenase (alkB) gene abundance in these zones due to water-table fluctuations. The n-alkanes formed a layer immediately above the water table, and when this was raised, they were carried upwards through the fluctuating zone into the vadose zone. Water content and n-alkanes component C10-C12 are main factors influencing bacterial community variation in the vadose zone, while C10-C12 is a key driving factor shaping bacterial community in the fluctuating zone. The most abundant bacterial phyla at all three zones were Proteobacteria, Firmicutes and Actinobacteria, but moisture-niche selection determined their relative abundance. The intermittent wetting cycle resulted in higher abundance of Proteobacteria, and lower abundance of Actinobacteria in the vadose and fluctuating zones in comparison to the control column with a static water-table. The abundances of the alkB gene variants were relatively uniform in different zones, probably because the bacterial populations harboring alkB gene are habituated to biogenic n-alkanes rather than responding to diesel fuel contamination. The variation in the bacterial populations with height due to moisture-niche selection had very little effect on the alkB gene abundance, possibly because numerous species in both phyla (Proteobacteria and Actinobacteria) carry an alkB gene variant. Nevertheless, the drop in the water table caused a short-term spike in alkB gene abundance in the saturated zone, which is most likely associated with transport of solutes or colloids from the fluctuating zone to bacteria species in the saturated zone, so a fluctuating water table could potentially increase n-alkane biodegradation function.

Phosphate fertilizers facilitated the Cd contaminated soil remediation by sepiolite: Cd mobilization, plant toxicity, and soil microbial community

In-situ immobilization does not remove Cd from the contaminated soil. It is vital to investigate the effects of fertilizers on soil Cd mobility during remediation with amendments. In the current study, a pot experiment was conducted to investigate the effects of calcium magnesium phosphate (CMP) and calcium superphosphate (SSP) on the remediation of Cd-contaminated soil by sepiolite. We mainly focused on changes in soil Cd immobilization, plant toxicity, and soil microbial communities after applying two phosphates during Cd-contaminated soil remediation by sepiolite. The results demonstrated that sepiolite decreased Cd concentration in brown rice, straw, and roots by 32.66%, 38.89%, and 30.94%, respectively. During soil remediation by sepiolite, the Cd concentrations of brown rice and straw were not affected by CMP or SSP, except for the treatment with sepiolite plus high-dose CMP. Sepiolite significantly decreased HCl-extractable Cd and DTPA-extractable Cd by 32.21% and 10.50%, respectively. During soil remediation by sepiolite, the HCl-extractable and DTPA-extractable Cd further decreased with CMP or SSP. The decreasing amplitude with CMP was 40.57-72.60% and 7.05-14.53%, and that of SSP was 37.68-59.66% and 20.71-25.07%, respectively. The superoxide dismutase, peroxidase, catalase activities, and malondialdehyde concentration in rice roots decreased inordinately with the addition of sepiolite, CMP, and SSP, indicating that the application of sepiolite, CMP, or SSP alleviated Cd-induced rice root stress and protected rice roots from Cd toxicity. Alpha diversity estimators (including the Chao, ACE, and Shannon indices) indicated that sepiolite, CMP, or SSP applications had no adverse effects on soil bacterial richness and diversity. Hierarchical clustering analysis revealed that the two phosphate fertilizers and sepiolite were the main factors affecting changes in the bacterial communities structure. Redundancy analysis revealed that soil pH, Eh, and soil-extractable Cd were critical factors affecting the structure of the bacterial communities.

Advances and prospects on the aquatic plant coupled with sediment microbial fuel cell system

Energy resource scarcity and sediment pollution perniciousness have become enormous challenges, to which research has been focused on energy recovery and recycle technologies to solve both above problems. The organic matter stored in anoxic sediments of freshwater ecosystem represents a tremendous potential energy source. The system of aquatic plant coupled with sediment microbial fuel cell (AP-SMFC) has attracted much attention as a more feasible, economical and eco-friendly way to remediate sediment and surface water and generate electricity. However, the research on AP-SMFC has only been carried out in the last decade, and relevant studies have not been well summarized. In this review, the advances and prospects on AP-SMFC were systematically introduced. Firstly, the annual publication counts and keywords co-occurrence cluster of AP-SMFC were identified and visualized by resorting to the CiteSpace software, and the result showed that the research on AP-SMFC increased significantly in the last decade on the whole and will continue to increase. The bibliometric results provided valuable references and information on potential research directions for future studies. And then, the research progress and reaction mechanism of AP-SMFC were systematically described. Thirdly, the performance of AP-SMFC, including nutrients removal, organic contaminants removal, and electricity generation, was systematically summarized. AP-SMFC can enhance the removal of pollutants and electricity generation compared with SMFC without AP, and is considered to be an ideal technology for pollutants removal and resource recovery. Finally, the current challenges and future perspectives were summarized and prospected. Therefore, the review could serve as a guide for the new entrants to the field and further development of AP-SMFC application.

Microbial Electrochemical Technologies for Sustainable Nitrogen Removal in Marine and Coastal Environments

For many years, the world’s coastal marine ecosystems have received industrial waste with high nitrogen concentrations, generating the eutrophication of these ecosystems. Different physicochemical-biological technologies have been developed to remove the nitrogen present in wastewater. However, conventional technologies have high operating costs and excessive production of brines or sludge which compromise the sustainability of the treatment. Microbial electrochemical technologies (METs) have begun to gain attention due to their cost-efficiency in removing nitrogen and organic matter using the metabolic capacity of microorganisms. This article combines a critical review of the environmental problems associated with the discharge of the excess nitrogen and the biological processes involved in its biogeochemical cycle; with a comparative analysis of conventional treatment technologies and METs especially designed for nitrogen removal. Finally, current METs limitations and perspectives as a sustainable nitrogen treatment alternative and efficient microbial enrichment techniques are included.

Physiological metabolism of electrochemically active bacteria directed by combined acetate and Cd(II) in single-chamber microbial electrolysis cells

It is of great interest to explore physiological metabolism of electrochemically active bacteria (EAB) for combined organics and heavy metals in single-chamber microbial electrolysis cells (MECs). Four pure culture EAB varying degrees responded to the combined acetate (1.0-5.0 g/L) and Cd(II) (20-150 mg/L) at different initial concentrations in the single-chamber MECs, shown as significant relevance of Cd(II) removal (2.57-7.35 mg/L/h) and H₂ production (0-0.0011 m³/m³/h) instead of acetate removal (73-130 mg/L/h), to these EAB species at initial Cd(II) below 120 mg/L and initial acetate below 3.0 g/L. A high initial acetate (5.0 g/L) compensated the Cd(II) inhibition and broadened the removal of Cd(II) to 150 mg/L. These EAB physiologically released variable amounts of extracellular polymeric substances with a compositional diversity in response to the changes of initial Cd(II) and circuital current whereas the activities of typical intracellular enzymes were more apparently altered by the initial Cd(II) than the circuital current. These results provide experimental validation of the presence, the metabolic plasticity and the physiological response of these EAB directed by the changes of initial Cd(II) and acetate concentrations in the single-chamber MECs, deepening our understanding of EAB physiological coping strategies in metallurgical microbial electro-ecological cycles.

Applicability of Ash Wastes for Reducing Trace Element Content in Zea mays L. Grown in Eco-Diesel Contaminated Soil

Among the large group of xenobiotics released into the environment, petroleum derivatives are particularly dangerous, especially given continuing industrial development and the rising demand for fuel. As increasing amounts of fly ash and sewage sludge are released, it becomes necessary to explore new methods of reusing these types of waste as reclamation agents or nutrient sources. The present study examined how soil contamination with Eco-Diesel oil (0; 10; 20 cm3 kg−1 soil) affected the trace-element content in the aerial parts of maize. Coal and sludge ashes were used as reclamation agents. Our study revealed that diesel oil strongly affected the trace-element content in the aerial parts of maize. In the non-amended group, Eco-Diesel oil contamination led to higher accumulation of the trace elements in maize (with the exception of Pb and Ni), with Cu and Mn content increasing the most. The ashes incorporated into the soil performed inconsistently as a reclamation agent. Overall, the amendment reduced Mn and Fe in the aerial parts of maize while increasing average Cd and Cu levels. No significant effect was noted for the other elements.

Stimulation of phenanthrene and biphenyl degradation by biochar-conducted long distance electron transfer in soil bioelectrochemical systems

The bioelectrochemical degradation of organic pollutants has attracted considerable attention owing to its remarkable sustainability and low cost. However, the application of bioelectrochemical system (BES) for the degradation of pollutants in soils is hindered by limitations in the effective distance in the soil matrix. In this study, a biochar-amended BES was constructed to evaluate the degradation of organic pollutants. This system was expected to extend the electron transfer distance via conductive biochar in soils. The results showed that biochar pyrolyzed at 900 °C facilitated the degradation of phenanthrene (PHE) and biphenyl (BP) in the soil BES (SBES), reaching 86.4%-95.1% and 88.8%-95.3% in 27 days, respectively. The effective distance of SBESs was estimated to be 154-271 cm away from the electrode, which increased 1.9-3 fold after the addition of biochar. Microbial community and functional gene analysis confirmed that biochar enriched functional degrading bacteria. These findings demonstrate that the promotion of long-distance electron transfer and the formation of soil conductive networks can be achieved by biochar amendment. Thus, this study provides a basis for the effective degradation of for persistent organic pollutants in petroleum-contaminated soils using bioelectrochemical strategy.

Metagenomic Analysis for Evaluating Change in Bacterial Diversity in TPH-Contaminated Soil after Soil Remediation

Soil washing and landfarming processes are widely used to remediate total petroleum hydrocarbon (TPH)-contaminated soil, but the impact of these processes on soil bacteria is not well understood. Four different states of soil (uncontaminated soil (control), TPH-contaminated soil (CS), after soil washing (SW), and landfarming (LF)) were collected from a soil remediation facility to investigate the impact of TPH and soil remediation processes on soil bacterial populations by metagenomic analysis. Results showed that TPH contamination reduced the operational taxonomic unit (OTU) number and alpha diversity of soil bacteria. Compared to SW and LF remediation techniques, LF increased more bacterial richness and diversity than SW, indicating that LF is a more effective technique for TPH remediation in terms of microbial recovery. Among different bacterial species, Proteobacteria were the most abundant in all soil groups followed by Actinobacteria, Acidobacteria, and Firmicutes. For each soil group, the distribution pattern of the Proteobacteria class was different. The most abundant classed were Alphaproteobacteria (16.56%) in uncontaminated soils, Deltaproteobacteria (34%) in TPH-contaminated soils, Betaproteobacteria (24%) in soil washing, and Gammaproteobacteria (24%) in landfarming, respectively. TPH-degrading bacteria were detected from soil washing (23%) and TPH-contaminated soils (21%) and decreased to 12% in landfarming soil. These results suggest that soil pollution can change the diversity of microbial groups and different remediation techniques have varied effective ranges for recovering bacterial communities and diversity. In conclusion, the landfarming process of TPH remediation is more advantageous than soil washing from the perspective of bacterial ecology.

Effects of water flow on performance of soil microbial fuel cells: Electricity generation, benzo[a]pyrene removal, microbial community and molecular ecological networks

Soil microbial fuel cells with water flow (W-SMFCs) as a driven force of substrate transport were constructed. Electricity generation, benzo[a]pyrene (BaP) removal, microbial communities and microbial molecular ecological networks were compared between W-SMFCs and their control reactors (without water flow, C-SMFCs) in 240 days of operation. The W-SMFCs started up faster than C-SMFCs (37 days vs. 50 days) and output higher startup voltage (148.45 mV vs. 111.90 mV). The water flow caused higher removal efficiency of BaP at sites >1 cm from the anode (S _{> 1 cm}) than at sites <1 cm from the anode (S _{< 1 cm}) in W-SMFCs, whereas in C-SMFCs, the removal efficiency of BaP at S_{< 1 cm} was higher than that at S_{> 1 cm}. The removal efficiency of BaP at S_{> 1 cm} in W-SMFCs was up to 1.7 times higher than that at S_{> 1 cm} in C-SMFCs on the 91^st day. After 240 days of operation, the biodegradation efficiency of absolute BaP amount was 45.95% in W-SMFCs, being 20% higher than that in C-SMFCs (38.17%). Moreover, the water flow caused highly tight interaction among the microbial species, which could be beneficial to BaP biodegradation. Conclusively, the water flow in soil was very beneficial for startup and biodegradation of BaP in SMFCs.

Combined phyto-microbial-electrochemical system enhanced the removal of petroleum hydrocarbons from soil: A profundity remediation strategy

The soil contaminated by petroleum hydrocarbons has been a global environmental problem and its remediation is urgent. A combined phyto-microbial-electrochemical system (PMES) was constructed to repair the oil-contaminated soil in this study. During the 42-day operation time, a total petroleum hydrocarbons (TPHs) of 18.0 ± 3.0% were removed from PMES, which increased by 414% compared with the control group (CK1). The supervision of physicochemical properties of pore water in soil exhibited an enhanced microbial consumption of the total organic carbon (TOC) and N source under the applied potential with the generation of bio-current. The microbial succession indicated that the Dietzia, Georgenia and Malbranchea possibly participated in the degradation and current output in PMES. And a collaborative network of potential degrading microorganisms including unclassified norank_f__JG30-KF-CM45 (in Chloroflexi), Dietzia and Malbranchea was discovered in PMES. While the functional communities of microorganism were re-enriched with the reconstructed interactions in the system which was started with the sterilized soil (S+MEC). The superiority of TPHs degradation in S+MEC compared to P + CK2 (removing the electrochemical effect relative to CK1) revealed the key role of external potential in regulating the degradation microflora. The study provided a strategy of the potential regulated phyto-microbial interaction for the removal of TPHs.

Bio-electrocatalytic remediation of hydrocarbons contaminated soil with integrated natural attenuation and chemical oxidant

The present study aimed to assess the possibility of integrating natural attenuation (NA) and chemical oxidation (O) with the bio-electrocatalytic remediation (BET) process to remediate petroleum hydrocarbons contaminated soil. Six different reactors were operated, wherein in the first reactor was a NA system, and the second condition to the NA was supplemented with a chemical oxidant (NAO). These systems were compared with BET systems which were differentiated based on the position and distance between the electrodes. The study was performed by considering NA as a common condition in all the six different reactors viz., NA, NAO, NA + BET with 0.5 cm space amid electrodes (BET_H-0.5), NAO + BET with 0.5 cm space amid electrodes (BETO_H-0.5), NAO + BET with 1.0 cm space amid electrodes (BETO_H-1.₀), and NAO + BET with vertical electrodes at 1.0 cm distance (BETO_V-1.₀). The highest total petroleum hydrocarbons (TPH) degradation efficiency was observed with BETO_H-0.5 (67 ± 0.8%) followed by BETO_H-1.0 (62 ± 0.6%), BET_H-0.5 (60%), BETO_V-1.0 (56 ± 0.5%), NAO (46.6%), and NA (27.7%). In NA, the indigenous microorganisms remediate the organic contaminants. In the NAO system, KMnO₄ actively breakdown the carbon-carbon double bond functional group. Further, in BETO_H-0.5, an anodophilic bacteria enriched around the electrode reported enhanced treatment efficiency along with a maximum of 260 mV (1.65 mA). BET systems integrated with chemical oxidation processes were much more effective in the TPH removal process than an individual process. The BET method adopted here thus provides a good opportunity for bio-electrocatalytic remediation of TPH and resource recovery in the form of bioelectricity.

Alternating current enhanced bioremediation of petroleum hydrocarbon-contaminated soils

In this work, bioremediation was applied with sinusoidal alternating current (AC) electric fields to remove petroleum hydrocarbon (TPH) for soil remediation. Applying AC electric field with bioremediation (AC+BIO) could efficiently remove 31.6% of the TPH in 21 days, much faster than that in the BIO only system (13.7%) and AC only system (5.5%). When the operation time extended to 119 days, the AC+BIO system could remove 73.3% of the TPH. Applying AC electric field (20-200 V/m) could maintain the soil pH at neutral, superior to the direct current electric field. The maximum difference between soil temperature and the room temperature was 1.9 °C in the AC (50 V/m) +BIO system. The effects of AC voltage gradient (20-200 V/m) on the microorganisms and TPH degradation efficiency by AC+BIO were investigated, and the optimized AC voltage gradient was assessed as 50 V/m for lab-scale experiments. The microbial community structures in the BIO and AC+BIO systems were compared. Although Pseudomonas was the dominant species, Firmicutes became more abundant in the AC+BIO system than the BIO system, indicating their adaptive capacity to the stress of the AC electric field. Real petroleum-contaminated soil was used as a reaction matrix to evaluate the performance of AC+BIO in the field. The initial current density was about 0.2 mA/cm², voltage gradient was about 20 V/m, and the average TPH degradation rate was 8.1 μg/g_{dry soil} per day. This study provided insights and fundamental supports for the applications of AC+BIO to treat petroleum-polluted soils.

Accelerated bioremediation of a complexly contaminated river sediment through ZVI-electrode combined stimulation

Complexly contaminated river sediment caused by reducible and oxidizable organic pollutants is a growing global concern due to the adverse influence on ecosystem safety and planetary health. How to strengthen indigenous microbial metabolic activity to enhance biodegradation and mineralization efficiency of refractory composite pollutants is critical but poorly understood in environmental biotechnology. Here, a synergetic biostimulation coupling electrode with zero-valent iron (ZVI) was investigated for the bioremediation of river sediments contaminated by 2,4,6-tribromophenol (TBP, reducible pollutant) and hydrocarbons (oxidizable pollutants). The bioremediation efficiency of ZVI based biostimulation coupling electrode against TBP debromination and hydrocarbons degradation were 1.1-3 times higher than the electrode used solely, which was attributed to the shape of distinctive microbial communities and the enrichment of potential dehalogenators (like Desulfovibrio, Desulfomicrobium etc.). The sediment microbial communities were significantly positively correlated with the enhanced degradation efficiencies of TBP and hydrocarbons (P < 0.05). Moreover, the coupled system predominately increased positive microbial interactions in the ecological networks. The possible mutual relationship between microbes i.e., Thiobacillus (iron-oxidizing bacteria) and Desulfovibrio (dehalogenator) as well as Pseudomonas (electroactive bacteria) and Clostridium (hydrocarbons degraders) were revealed. This study proposed a promising approach for efficient bioremediation of complexly contaminated river sediments.

Organic matter composition, BaP biodegradation and microbial communities at sites near and far from the bioanode in a soil microbial fuel cell

Bioanodes in a soil microbial fuel cell (SMFC) can serve as sustainable electron acceptors in microbial metabolism processes; thus, SMFCs are considered a promising in situ bioremediation technology. Most related studies have focused on the removal efficiency of contaminants. Relatively few efforts have been made to comprehensively investigate the organic matter composition and biodegradation metabolites of organic contaminants and microbial communities at various distances from the bioanode. In this study, the level and composition of dissolved organic matter (DOM), biodegradation metabolites of benzo[a]pyrene (BaP), and microbial communities at two sites with different distances (S_1cm and S_11cm) to the bioanode were investigated in an SMFC. The consumption efficiency of dissolved organic carbon (R_DOC) and removal efficiency of BaP (R_BaP) at S_1cm were slightly higher than those at S_11cm after 100 days (R_DOC 47.82 ± 5.77% at S_1cm and 44.98 ± 10.76% at S_11cm; R_BaP 72.52 ± 1.88% at S_1cm and 68.50 ± 4.34% at S_11cm). More fulvic acid-like components and more low-molecular-weight metabolites (indicating a higher biodegradation degree) of BaP were generated at S_1cm than at S_11cm. The microbial community structures were similar at the two sites. Electroactive bacteria (EAB) and some polycyclic aromatic hydrocarbon degraders were both enriched at the bioanode. Energy metabolism at the bioanode could be upregulated to generate more adenosine triphosphate (ATP). In conclusion, the bioanode could modulate the metabolic pathways in the adjacent soil by strengthening the contact between the EAB and BaP degraders, and providing more ATP to the BaP degraders.

Recent advances in soil microbial fuel cells for soil contaminants remediation

The cost-effective and eco-friendly approaches are needed for decontamination of polluted soils. The bio-electrochemical system, especially microbial fuel cells (MFCs) offer great promise as a technology for remediation of soil, sediment, sludge and wastewater. Recently, soil MFCs (SMFCs) have been attracting increasing amounts of interest in environmental remediation, since they are capable of providing a clean and inexhaustible source of electron donors or acceptors and can be easily controlled by adjusting the electrochemical parameters. In this review, we comprehensively covered the principle of SMFCs including the mechanisms of electron releasing and electron transportation, summarized the applications for soil contaminants remediation by SMFCs with highlights on organic contaminants degradation and heavy metal ions removal. In addition, the main factors that affected the performance of SMFCs were discussed in details which would be helpful for performance optimization of SMFCs as well as the efficiency improvement for soil remediation. Moreover, the key issues need to be addressed and future perspectives are presented.

New insights into the degradation of synthetic pollutants in contaminated environments

The environment is contaminated by synthetic contaminants owing to their extensive applications globally. Hence, the removal of synthetic pollutants (SPs) from the environment has received widespread attention. Different remediation technologies have been investigated for their abilities to eliminate SPs from the ecosystem; these include photocatalysis, sonochemical techniques, nanoremediation, and bioremediation. SPs, which can be organic or inorganic, can be degraded by microbial metabolism at contaminated sites. Owing to their diverse metabolisms, microbes can adapt to a wide variety of environments. Several microbial strains have been reported for their bioremediation potential concerning synthetic chemical compounds. The selection of potential strains for large-scale removal of organic pollutants is an important research priority. Additionally, novel microbial consortia have been found to be capable of efficient degradation owing to their combined and co-metabolic activities. Microbial engineering is one of the most prominent and promising techniques for providing new opportunities to develop proficient microorganisms for various biological processes; here, we have targeted the SP-degrading mechanisms of microorganisms. This review provides an in-depth discussion of microbial engineering techniques that are used to enhance the removal of both organic and inorganic pollutants from different contaminated environments and under different conditions. The degradation of these pollutants is investigated using abiotic and biotic approaches; interestingly, biotic approaches based on microbial methods are preferable owing to their high potential for pollutant removal and cost-effectiveness.

Mechanisms and challenges of microbial fuel cells for soil heavy metal(loid)s remediation

Bioelectrochemical approaches offer a simple, effective, and environmentally friendly solution to pollutant remediation. As a versatile technology, although many studies have shown its potential in soil heavy metal(loid) remediation, the mechanism behind this process is not simple or well-reviewed. Thus, in this review we summarized the impacts of the microbial fuel cells (MFCs) on metal (loids) movement and transformation in the soil environment in terms of changes in soil pH, electromigration, and substrate competition between anode-respiring bacteria and the soil microbial community. Furthermore, the progress of MFCs in the fixation/removal of different elements from the soil environment is described. Hence, this review provides critical insight into the use of the MFC for soil metal(loid) bioremediation.

Ferric iron stimulation in marine SMFCs: Impact on the microbial structure evolution in contaminated sediments with low and high molecular weight PAHs

The impact of ferric iron stimulation on the evolution of microbial structure in marine sediment microbial fuel cells (SMFCs), operated for the bioremediation of a complex mixture of low and high molecular weight PAHs (naphthalene, fluorene, pyrene and benzo(a)pyrene), was assessed. Microbial evolution profiles showed high relative abundances of exoelectrogenic iron-reducing bacteria throughout the biodegradation, namely Geoalkalibacter, under ferric iron stimulation and anode reducing conditions, irrespective of sulfate reducing bacteria (SRB) inhibition. Highest PAHs removal was measured in the absence of anode reduction, under Fe stimulation and SRB inhibition, reaching 40.85% for benzo(a)pyrene, the most persistent PAH used in this study. Results suggest that amendment of contaminated sediment with ferric iron could constitute a better bioremediation strategy than using SMFCs. This becomes significant when considering the well-established and dominant indigenous SRB population in marine sediments that usually limits the performance of the anode as a terminal electron acceptor in marine SMFCs.

Non-Invasive Measurement, Mathematical Simulation and In Situ Detection of Biofilm Evolution in Porous Media: A Review

The development of biofilms and the related changes in porous media in the subsurface cannot be directly observed and evaluated. The primary reason that the mechanism of biofilm clogging in porous media cannot be clearly demonstrated is due to the opacity and structural complexity of three-dimensional pore space. Interest in exploring methods to overcome this limitation has been increasing. In the first part of this review, we introduce the underlying characteristics of biofilm in porous media. Then, we summarize two approaches, non-invasive measurement methods and mathematical simulation strategies, for studying fluid–biofilm–porous medium interaction with spatiotemporal resolution. We also discuss the advantages and limitations of these approaches. Lastly, we provide a perspective on opportunities for in situ monitoring at the field site.

Bioelectrochemically enhanced degradation of bisphenol S: mechanistic insights from stable isotope-assisted investigations

Electroactive microbes is the driving force for the bioelectrochemical degradation of organic pollutants, but the underlying microbial interactions between electrogenesis and pollutant degradation have not been clearly identified. Here, we combined stable isotope-assisted metabolomics (SIAM) and 13C-DNA stable isotope probing (DNA-SIP) to investigate bisphenol S (BPS) enhanced degradation by electroactive mixed-culture biofilms (EABs). Using SIAM, six 13C fully labeled transformation products were detected originating via hydrolysis, oxidation, alkylation, or aromatic ring-cleavage reactions from 13C-BPS, suggesting hydrolysis and oxidation as the initial and key degradation pathways for the electrochemical degradation process. The DNA-SIP results further displayed high 13C-DNA accumulation in the genera Bacteroides and Cetobacterium from the EABs and indicated their ability in the assimilation of BPS or its metabolites. Collectively, network analysis showed that the collaboration between electroactive microbes and BPS assimilators played pivotal roles the improvement in bioelectrochemically enhanced BPS degradation.