1
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De Biasi F, Karthikeyan G, Visegrádi M, Levien M, Hope MA, Brown PJ, Wasielewski MR, Ouari O, Emsley L. Light-Induced 1H NMR Hyperpolarization in Solids at 9.4 and 21.1 T. J Am Chem Soc 2024; 146:19667-19672. [PMID: 39007869 PMCID: PMC11273353 DOI: 10.1021/jacs.4c06151] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/06/2024] [Revised: 06/10/2024] [Accepted: 07/03/2024] [Indexed: 07/16/2024]
Abstract
The inherently low sensitivity of nuclear magnetic resonance (NMR) spectroscopy is the major limiting factor for its application to elucidate structure and dynamics in solids. In the solid state, nuclear spin hyperpolarization methods based on microwave-induced dynamic nuclear polarization (DNP) provide a versatile platform to enhance the bulk NMR signal of many different sample formulations, leading to significant sensitivity improvements. Here we show that 1H NMR hyperpolarization can also be generated in solids at high magnetic fields by optical irradiation of the sample. We achieved this by exploiting a donor-chromophore-acceptor molecule with an excited state electron-electron interaction similar to the nuclear Larmor frequency, enabling solid-state 1H photochemically induced DNP (photo-CIDNP) at high magnetic fields. Through hyperpolarization relay, we obtained bulk NMR signal enhancements εH by factors of ∼100 at both 9.4 and 21.1 T for the 1H signal of o-terphenyl in magic angle spinning (MAS) NMR experiments at 100 K. These findings open a pathway toward a general light-induced hyperpolarization approach for dye-sensitized high-field NMR in solids.
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Affiliation(s)
- Federico De Biasi
- Institut
des Sciences et Ingenierie Chimiques, École
Polytechnique Fedérale de Lausanne (EPFL), CH-1015 Lausanne, Switzerland
| | - Ganesan Karthikeyan
- Aix-Marseille
University, CNRS, Institut de Chimie Radicalaire, 13013 Marseille, France
| | - Máté Visegrádi
- Institut
des Sciences et Ingenierie Chimiques, École
Polytechnique Fedérale de Lausanne (EPFL), CH-1015 Lausanne, Switzerland
| | - Marcel Levien
- Institut
des Sciences et Ingenierie Chimiques, École
Polytechnique Fedérale de Lausanne (EPFL), CH-1015 Lausanne, Switzerland
| | - Michael A. Hope
- Institut
des Sciences et Ingenierie Chimiques, École
Polytechnique Fedérale de Lausanne (EPFL), CH-1015 Lausanne, Switzerland
| | - Paige J. Brown
- Department
of Chemistry, Center for Molecular Quantum Transduction, Paula M.
Trienens Institute for Sustainability and Energy, Northwestern University, Evanston, Illinois 60208-3113, United States
| | - Michael R. Wasielewski
- Department
of Chemistry, Center for Molecular Quantum Transduction, Paula M.
Trienens Institute for Sustainability and Energy, Northwestern University, Evanston, Illinois 60208-3113, United States
| | - Olivier Ouari
- Aix-Marseille
University, CNRS, Institut de Chimie Radicalaire, 13013 Marseille, France
| | - Lyndon Emsley
- Institut
des Sciences et Ingenierie Chimiques, École
Polytechnique Fedérale de Lausanne (EPFL), CH-1015 Lausanne, Switzerland
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2
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De Biasi F, Hope MA, Qiu Y, Brown PJ, Visegrádi M, Ouari O, Wasielewski MR, Emsley L. Magic Angle Spinning Solid-State 13C Photochemically Induced Dynamic Nuclear Polarization by a Synthetic Donor-Chromophore-Acceptor System at 9.4 T. J Phys Chem Lett 2024; 15:5488-5494. [PMID: 38748557 PMCID: PMC11129313 DOI: 10.1021/acs.jpclett.4c01121] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/16/2024] [Revised: 05/06/2024] [Accepted: 05/10/2024] [Indexed: 05/24/2024]
Abstract
Solid-state photochemically induced dynamic nuclear polarization (photo-CIDNP) is a nuclear magnetic resonance spectroscopy technique in which nuclear spin hyperpolarization is generated upon optical irradiation of an appropriate donor-acceptor system. Until now, solid-state photo-CIDNP at high magnetic fields has been observed only in photosynthetic reaction centers and flavoproteins. In the present work, we show that the effect is not limited to such biomolecular samples, and solid-state 13C photo-CIDNP can be observed at 9.4 T under magic angle spinning using a frozen solution of a synthetic molecular system dissolved in an organic solvent. Signal enhancements for the source molecule larger than a factor of 2300 are obtained. In addition, we show that bulk 13C hyperpolarization of the solvent can be generated via spontaneous 13C-13C spin diffusion at natural abundance.
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Affiliation(s)
- Federico De Biasi
- Institut
des Sciences et Ingenierie Chimiques, École
Polytechnique Fedérale de Lausanne (EPFL), CH-1015 Lausanne, Switzerland
| | - Michael A. Hope
- Institut
des Sciences et Ingenierie Chimiques, École
Polytechnique Fedérale de Lausanne (EPFL), CH-1015 Lausanne, Switzerland
| | - Yunfan Qiu
- Department
of Chemistry, Center for Molecular Quantum Transduction, Paula M.
Trienens Institute for Sustainability and Energy, Northwestern University, Evanston, Illinois 60208-3113, United States
| | - Paige J. Brown
- Department
of Chemistry, Center for Molecular Quantum Transduction, Paula M.
Trienens Institute for Sustainability and Energy, Northwestern University, Evanston, Illinois 60208-3113, United States
| | - Máté Visegrádi
- Institut
des Sciences et Ingenierie Chimiques, École
Polytechnique Fedérale de Lausanne (EPFL), CH-1015 Lausanne, Switzerland
| | - Olivier Ouari
- Aix-Marseille
University, Centre National de la Recherche Scientifique (CNRS), Institut
de Chimie Radicalaire, 13013 Marseille, France
| | - Michael R. Wasielewski
- Department
of Chemistry, Center for Molecular Quantum Transduction, Paula M.
Trienens Institute for Sustainability and Energy, Northwestern University, Evanston, Illinois 60208-3113, United States
| | - Lyndon Emsley
- Institut
des Sciences et Ingenierie Chimiques, École
Polytechnique Fedérale de Lausanne (EPFL), CH-1015 Lausanne, Switzerland
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3
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Kim Y, Alia A, Kurle-Tucholski P, Wiebeler C, Matysik J. Electronic Structures of Radical-Pair-Forming Cofactors in a Heliobacterial Reaction Center. Molecules 2024; 29:1021. [PMID: 38474533 DOI: 10.3390/molecules29051021] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/29/2024] [Revised: 02/16/2024] [Accepted: 02/22/2024] [Indexed: 03/14/2024] Open
Abstract
Photosynthetic reaction centers (RCs) are membrane proteins converting photonic excitations into electric gradients. The heliobacterial RCs (HbRCs) are assumed to be the precursors of all known RCs, making them a compelling subject for investigating structural and functional relationships. A comprehensive picture of the electronic structure of the HbRCs is still missing. In this work, the combination of selective isotope labelling of 13C and 15N nuclei and the utilization of photo-CIDNP MAS NMR (photochemically induced dynamic nuclear polarization magic-angle spinning nuclear magnetic resonance) allows for highly enhanced signals from the radical-pair-forming cofactors. The remarkable magnetic-field dependence of the solid-state photo-CIDNP effect allows for observation of positive signals of the electron donor cofactor at 4.7 T, which is interpreted in terms of a dominant contribution of the differential relaxation (DR) mechanism. Conversely, at 9.4 T, the emissive signals mainly originate from the electron acceptor, due to the strong activation of the three-spin mixing (TSM) mechanism. Consequently, we have utilized two-dimensional homonuclear photo-CIDNP MAS NMR at both 4.7 T and 9.4 T. These findings from experimental investigations are corroborated by calculations based on density functional theory (DFT). This allows us to present a comprehensive investigation of the electronic structure of the cofactors involved in electron transfer (ET).
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Affiliation(s)
- Yunmi Kim
- Institut für Analytische Chemie, Universität Leipzig, Linnéstraße 3, D-04103 Leipzig, Germany
| | - A Alia
- Leiden Institute of Chemistry, Leiden University, Einsteinweg 55, 2301 RA Leiden, The Netherlands
- Institut für Medizinische Physik und Biophysik, Universität Leipzig, Härtelstr. 16-18, D-04107 Leipzig, Germany
| | - Patrick Kurle-Tucholski
- Institut für Analytische Chemie, Universität Leipzig, Linnéstraße 3, D-04103 Leipzig, Germany
| | - Christian Wiebeler
- Institut für Analytische Chemie, Universität Leipzig, Linnéstraße 3, D-04103 Leipzig, Germany
- Institut für Physik, Universität Augsburg, Universitätsstraße 1, D-86159 Augsburg, Germany
| | - Jörg Matysik
- Institut für Analytische Chemie, Universität Leipzig, Linnéstraße 3, D-04103 Leipzig, Germany
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4
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De Biasi F, Hope MA, Avalos CE, Karthikeyan G, Casano G, Mishra A, Badoni S, Stevanato G, Kubicki DJ, Milani J, Ansermet JP, Rossini AJ, Lelli M, Ouari O, Emsley L. Optically Enhanced Solid-State 1H NMR Spectroscopy. J Am Chem Soc 2023. [PMID: 37366803 DOI: 10.1021/jacs.3c03937] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/28/2023]
Abstract
Low sensitivity is the primary limitation to extending nuclear magnetic resonance (NMR) techniques to more advanced chemical and structural studies. Photochemically induced dynamic nuclear polarization (photo-CIDNP) is an NMR hyperpolarization technique where light is used to excite a suitable donor-acceptor system, creating a spin-correlated radical pair whose evolution drives nuclear hyperpolarization. Systems that exhibit photo-CIDNP in solids are not common, and this effect has, up to now, only been observed for 13C and 15N nuclei. However, the low gyromagnetic ratio and natural abundance of these nuclei trap the local hyperpolarization in the vicinity of the chromophore and limit the utility for bulk hyperpolarization. Here, we report the first example of optically enhanced solid-state 1H NMR spectroscopy in the high-field regime. This is achieved via photo-CIDNP of a donor-chromophore-acceptor molecule in a frozen solution at 0.3 T and 85 K, where spontaneous spin diffusion among the abundant strongly coupled 1H nuclei relays polarization through the whole sample, yielding a 16-fold bulk 1H signal enhancement under continuous laser irradiation at 450 nm. These findings enable a new strategy for hyperpolarized NMR beyond the current limits of conventional microwave-driven DNP.
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Affiliation(s)
- Federico De Biasi
- Institut des Sciences et Ingenierie Chimiques, École Polytechnique Fedérale de Lausanne (EPFL), CH-1015 Lausanne, Switzerland
| | - Michael A Hope
- Institut des Sciences et Ingenierie Chimiques, École Polytechnique Fedérale de Lausanne (EPFL), CH-1015 Lausanne, Switzerland
| | - Claudia E Avalos
- Institut des Sciences et Ingenierie Chimiques, École Polytechnique Fedérale de Lausanne (EPFL), CH-1015 Lausanne, Switzerland
| | - Ganesan Karthikeyan
- Institute of Radical Chemistry, Aix-Marseille University, CNRS, ICR, 13013 Marseille, France
| | - Gilles Casano
- Institute of Radical Chemistry, Aix-Marseille University, CNRS, ICR, 13013 Marseille, France
| | - Aditya Mishra
- Institut des Sciences et Ingenierie Chimiques, École Polytechnique Fedérale de Lausanne (EPFL), CH-1015 Lausanne, Switzerland
| | - Saumya Badoni
- Institut des Sciences et Ingenierie Chimiques, École Polytechnique Fedérale de Lausanne (EPFL), CH-1015 Lausanne, Switzerland
| | - Gabriele Stevanato
- Institut des Sciences et Ingenierie Chimiques, École Polytechnique Fedérale de Lausanne (EPFL), CH-1015 Lausanne, Switzerland
| | - Dominik J Kubicki
- Institut des Sciences et Ingenierie Chimiques, École Polytechnique Fedérale de Lausanne (EPFL), CH-1015 Lausanne, Switzerland
| | - Jonas Milani
- Institut de Physique, École Polytechnique Fedérale de Lausanne (EPFL), CH-1015 Lausanne, Switzerland
| | - Jean-Philippe Ansermet
- Institut de Physique, École Polytechnique Fedérale de Lausanne (EPFL), CH-1015 Lausanne, Switzerland
| | - Aaron J Rossini
- U.S. Department of Energy, Ames Laboratory, Ames, Iowa 50011, United States
- Department of Chemistry, Iowa State University, Ames, Iowa 50011, United States
| | - Moreno Lelli
- Magnetic Resonance Center (CERM) and Department of Chemistry "Ugo Schiff", University of Florence, 50019 Sesto Fiorentino, Italy
- Consorzio Interuniversitario Risonanze Magnetiche delle Metalloproteine Paramagnetiche (CIRMMP), 50019 Sesto Fiorentino, Italy
| | - Olivier Ouari
- Institute of Radical Chemistry, Aix-Marseille University, CNRS, ICR, 13013 Marseille, France
| | - Lyndon Emsley
- Institut des Sciences et Ingenierie Chimiques, École Polytechnique Fedérale de Lausanne (EPFL), CH-1015 Lausanne, Switzerland
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5
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Matysik J, Ding Y, Kim Y, Kurle P, Yurkovskaya A, Ivanov K, Alia A. Photo-CIDNP in Solid State. APPLIED MAGNETIC RESONANCE 2021; 53:521-537. [PMID: 33840910 PMCID: PMC8021640 DOI: 10.1007/s00723-021-01322-5] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/25/2020] [Revised: 02/08/2021] [Accepted: 02/11/2021] [Indexed: 05/27/2023]
Abstract
Photo-CIDNP (photo-chemically induced dynamic nuclear polarization) refers to nuclear polarization created by the spin-chemical evolution of spin-correlated radical pairs (SCRPs). This phenomenon occurs in gases, liquids and solids. Based on the solid-state photo-CIDNP effect observed under magic-angle spinning (MAS), photo-CIDNP MAS NMR has been developed as analytical method. Here we report the origin, the theory and the state of the art of this method.
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Affiliation(s)
- Jörg Matysik
- Institut für Analytische Chemie, Universität Leipzig, Linnéstr. 3, 04103 Leipzig, Germany
| | - Yonghong Ding
- Institut für Analytische Chemie, Universität Leipzig, Linnéstr. 3, 04103 Leipzig, Germany
| | - Yunmi Kim
- Institut für Analytische Chemie, Universität Leipzig, Linnéstr. 3, 04103 Leipzig, Germany
| | - Patrick Kurle
- Institut für Analytische Chemie, Universität Leipzig, Linnéstr. 3, 04103 Leipzig, Germany
| | | | - Konstantin Ivanov
- International Tomography Center, Institutskaya, 630090 Novosibirsk, Russia
| | - A. Alia
- Institut für Medizinische Physik und Biophysik, Universität Leipzig, Härtelstr. 16-18, 04107 Leipzig, Germany
- Leiden Institute of Chemistry, Leiden University, Einsteinweg 55, 2333 CC Leiden, The Netherlands
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6
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Artiukhin DG, Eschenbach P, Matysik J, Neugebauer J. Theoretical Assessment of Hinge-Type Models for Electron Donors in Reaction Centers of Photosystems I and II as well as of Purple Bacteria. J Phys Chem B 2021; 125:3066-3079. [PMID: 33749260 DOI: 10.1021/acs.jpcb.0c10656] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Hinge-type molecular models for electron donors in reaction centers of Photosystems I and II and purple bacteria were investigated using a two-state computational approach based on frozen-density embedding (FDE). This methodology, dubbed FDE-diab, is known to avoid consequences of the self-interaction error as far as intermolecular phenomena are concerned, which allows a prediction of qualitatively correct spin densities for large biomolecular systems. The calculated spin density distributions are in a good agreement with available experimental results and demonstrated a very high sensitivity to changes in the relative orientation of cofactors and amino acid protonation states. This allows a validation of the previously proposed hinge-type models providing hints on possible protonation states of axial histidine molecules.
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Affiliation(s)
- Denis G Artiukhin
- Department of Chemistry, Aarhus Universitet, DK-8000 Aarhus, Denmark
| | - Patrick Eschenbach
- Theoretische Organische Chemie, Organisch-Chemisches Institut and Center for Multiscale Theory and Simulation, Westfälische Wilhelms-Universität Münster, Corrensstraße 40, 48149 Münster, Germany
| | - Jörg Matysik
- Institut für Analytische Chemie, Universität Leipzig, Linnéstr. 3, 04103 Leipzig, Germany
| | - Johannes Neugebauer
- Theoretische Organische Chemie, Organisch-Chemisches Institut and Center for Multiscale Theory and Simulation, Westfälische Wilhelms-Universität Münster, Corrensstraße 40, 48149 Münster, Germany
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7
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Fay TP, Lindoy LP, Manolopoulos DE. Spin relaxation in radical pairs from the stochastic Schrödinger equation. J Chem Phys 2021; 154:084121. [PMID: 33639770 DOI: 10.1063/5.0040519] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022] Open
Abstract
We show that the stochastic Schrödinger equation (SSE) provides an ideal way to simulate the quantum mechanical spin dynamics of radical pairs. Electron spin relaxation effects arising from fluctuations in the spin Hamiltonian are straightforward to include in this approach, and their treatment can be combined with a highly efficient stochastic evaluation of the trace over nuclear spin states that is required to compute experimental observables. These features are illustrated in example applications to a flavin-tryptophan radical pair of interest in avian magnetoreception and to a problem involving spin-selective radical pair recombination along a molecular wire. In the first of these examples, the SSE is shown to be both more efficient and more widely applicable than a recent stochastic implementation of the Lindblad equation, which only provides a valid treatment of relaxation in the extreme-narrowing limit. In the second, the exact SSE results are used to assess the accuracy of a recently proposed combination of Nakajima-Zwanzig theory for the spin relaxation and Schulten-Wolynes theory for the spin dynamics, which is applicable to radical pairs with many more nuclear spins. We also analyze the efficiency of trace sampling in some detail, highlighting the particular advantages of sampling with SU(N) coherent states.
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Affiliation(s)
- Thomas P Fay
- Physical and Theoretical Chemistry Laboratory, Department of Chemistry, University of Oxford, South Parks Road, Oxford OX1 3QZ, United Kingdom
| | - Lachlan P Lindoy
- Physical and Theoretical Chemistry Laboratory, Department of Chemistry, University of Oxford, South Parks Road, Oxford OX1 3QZ, United Kingdom
| | - David E Manolopoulos
- Physical and Theoretical Chemistry Laboratory, Department of Chemistry, University of Oxford, South Parks Road, Oxford OX1 3QZ, United Kingdom
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8
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Artiukhin DG, Eschenbach P, Neugebauer J. Computational Investigation of the Spin-Density Asymmetry in Photosynthetic Reaction Center Models from First Principles. J Phys Chem B 2020; 124:4873-4888. [DOI: 10.1021/acs.jpcb.0c02827] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
| | - Patrick Eschenbach
- Theoretische Organische Chemie, Organisch-Chemisches Institut and Center for Multiscale Theory and Simulation, Westfälische Wilhelms-Universität Münster, Corrensstraße 40, 48149 Münster, Germany
| | - Johannes Neugebauer
- Theoretische Organische Chemie, Organisch-Chemisches Institut and Center for Multiscale Theory and Simulation, Westfälische Wilhelms-Universität Münster, Corrensstraße 40, 48149 Münster, Germany
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9
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Ding Y, Kiryutin AS, Yurkovskaya AV, Sosnovsky DV, Sagdeev RZ, Bannister S, Kottke T, Kar RK, Schapiro I, Ivanov KL, Matysik J. Nuclear spin-hyperpolarization generated in a flavoprotein under illumination: experimental field-dependence and theoretical level crossing analysis. Sci Rep 2019; 9:18436. [PMID: 31804538 PMCID: PMC6895156 DOI: 10.1038/s41598-019-54671-4] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/06/2019] [Accepted: 11/15/2019] [Indexed: 11/25/2022] Open
Abstract
The solid-state photo-chemically induced dynamic nuclear polarization (photo-CIDNP) effect generates non-equilibrium nuclear spin polarization in frozen electron-transfer proteins upon illumination and radical-pair formation. The effect can be observed in various natural photosynthetic reaction center proteins using magic-angle spinning (MAS) nuclear magnetic resonance (NMR) spectroscopy, and in a flavin-binding light-oxygen-voltage (LOV) domain of the blue-light receptor phototropin. In the latter system, a functionally instrumental cysteine has been mutated to interrupt the natural cysteine-involving photochemistry allowing for an electron transfer from a more distant tryptophan to the excited flavin mononucleotide chromophore. We explored the solid-state photo-CIDNP effect and its mechanisms in phototropin-LOV1-C57S from the green alga Chlamydomonas reinhardtii by using field-cycling solution NMR. We observed the 13C and, to our knowledge, for the first time, 15N photo-CIDNP signals from phototropin-LOV1-C57S. Additionally, the 1H photo-CIDNP signals of residual water in the deuterated buffer of the protein were detected. The relative strengths of the photo-CIDNP effect from the three types of nuclei, 1H, 13C and 15N were measured in dependence of the magnetic field, showing their maximum polarizations at different magnetic fields. Theoretical level crossing analysis demonstrates that anisotropic mechanisms play the dominant role at high magnetic fields.
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Affiliation(s)
- Yonghong Ding
- Institut für Analytische Chemie, Universität Leipzig, Linnéstr. 3, 04103, Leipzig, Germany
| | - Alexey S Kiryutin
- International Tomography Center, Siberian Branch of Russian Academy of Sciences, Institutskaya, 3а, Novosibirsk, 630090, Russia
- Novosibirsk State University, Pirogova 1, Novosibirsk, 630090, Russia
| | - Alexandra V Yurkovskaya
- International Tomography Center, Siberian Branch of Russian Academy of Sciences, Institutskaya, 3а, Novosibirsk, 630090, Russia
- Novosibirsk State University, Pirogova 1, Novosibirsk, 630090, Russia
| | - Denis V Sosnovsky
- International Tomography Center, Siberian Branch of Russian Academy of Sciences, Institutskaya, 3а, Novosibirsk, 630090, Russia
- Novosibirsk State University, Pirogova 1, Novosibirsk, 630090, Russia
| | - Renad Z Sagdeev
- International Tomography Center, Siberian Branch of Russian Academy of Sciences, Institutskaya, 3а, Novosibirsk, 630090, Russia
- Novosibirsk State University, Pirogova 1, Novosibirsk, 630090, Russia
| | - Saskia Bannister
- Physical and Biophysical Chemistry, Bielefeld University, Universitätsstr. 25, 33615, Bielefeld, Germany
| | - Tilman Kottke
- Physical and Biophysical Chemistry, Bielefeld University, Universitätsstr. 25, 33615, Bielefeld, Germany
| | - Rajiv K Kar
- Fritz Haber Center for Molecular Dynamics Research, Institute of Chemistry, The Hebrew University of Jerusalem, Jerusalem, 9190401, Israel
| | - Igor Schapiro
- Fritz Haber Center for Molecular Dynamics Research, Institute of Chemistry, The Hebrew University of Jerusalem, Jerusalem, 9190401, Israel
| | - Konstantin L Ivanov
- International Tomography Center, Siberian Branch of Russian Academy of Sciences, Institutskaya, 3а, Novosibirsk, 630090, Russia
- Novosibirsk State University, Pirogova 1, Novosibirsk, 630090, Russia
| | - Jörg Matysik
- Institut für Analytische Chemie, Universität Leipzig, Linnéstr. 3, 04103, Leipzig, Germany.
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10
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Paul S, Roy U, Böckers M, Neugebauer J, Alia A, Matysik J. 15N photo-CIDNP MAS NMR analysis of a bacterial photosynthetic reaction center of Rhodobacter sphaeroides wildtype. J Chem Phys 2019; 151:195101. [PMID: 31757137 DOI: 10.1063/1.5128783] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022] Open
Abstract
The solid-state photochemically induced dynamic nuclear polarization (photo-CIDNP) effect has been studied in a quinone-depleted uniformly (u-)13C,15N-labeled photosynthetic reaction center (RC) protein from purple bacterium Rhodobacter (R.) sphaeroides wild type (WT). As a method for investigation, solid-state 15N NMR under magic-angle spinning (MAS) is applied under both continuous illumination (steady state) and nanosecond-laser flashes (time-resolved). While all previous 15N photo-CIDNP MAS NMR studies on the purple bacterial RC used the carotenoid-less mutant R26, this is the first using WT samples. The absence of further photo-CIDNP mechanisms (compared to R26) and various couplings (compared to 13C NMR experiments on 13C-labeled samples) allows the simplification of the spin-system. We report 15N signals of the three cofactors forming the spin-correlated radical pair (SCRP) and, based on density-functional theory calculations, their assignment. The simulation of photo-CIDNP intensities and time-resolved 15N photo-CIDNP MAS NMR data matches well to the frame of the mechanistic interpretation. Three spin-chemical processes, namely, radical pair mechanism, three spin mixing, and differential decay, generate emissive (negative) 15N polarization in the singlet decay channel and absorptive (positive) polarization in the triplet decay channel of the SCRP. The absorptive 15N polarization of the triplet decay channel is transiently obscured during the lifetime of the triplet state of the carotenoid (3Car); therefore, the observed 15N signals are strongly emissive. Upon decay of 3Car, the transiently obscured polarization becomes visible by reducing the excess of emissive polarization. After the decline of 3Car, the remaining nuclear hyperpolarization decays with nuclear T1 relaxation kinetics.
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Affiliation(s)
- Shubhajit Paul
- Institut für Analytische Chemie, Universität Leipzig, Linnéstr. 3, D-04103 Leipzig, Germany
| | - Upasana Roy
- Institut für Analytische Chemie, Universität Leipzig, Linnéstr. 3, D-04103 Leipzig, Germany
| | - Michael Böckers
- Organisch-Chemisches Institut and Center for Multiscale Theory and Computation, Universität Münster, Corrensstraße 40, D-48149 Münster, Germany
| | - Johannes Neugebauer
- Organisch-Chemisches Institut and Center for Multiscale Theory and Computation, Universität Münster, Corrensstraße 40, D-48149 Münster, Germany
| | - A Alia
- Institut für Medizinische Physik und Biophysik, Universität Leipzig, Härtelstr. 16, D-04107 Leipzig, Germany
| | - Jörg Matysik
- Institut für Analytische Chemie, Universität Leipzig, Linnéstr. 3, D-04103 Leipzig, Germany
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11
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Panov M, Bielytskyi P, Gräsing D, Yurkovskaya A, Matysik J. Same spectral signature in liquid-state and solid-state 1H photo-CIDNP NMR spectra of cyclohexanone. Mol Phys 2019. [DOI: 10.1080/00268976.2018.1512722] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/28/2022]
Affiliation(s)
- Mikhail Panov
- International Tomography Center, Siberian Branch of Russian Academy of Science, Novosibirsk, Russia
- Novosibirsk State University, Novosibirsk, Russia
| | - Pavlo Bielytskyi
- Universität Leipzig, Institut für Analytische Chemie, Leipzig, Germany
| | - Daniel Gräsing
- Universität Leipzig, Institut für Analytische Chemie, Leipzig, Germany
| | - Alexandra Yurkovskaya
- International Tomography Center, Siberian Branch of Russian Academy of Science, Novosibirsk, Russia
- Novosibirsk State University, Novosibirsk, Russia
| | - Jörg Matysik
- Universität Leipzig, Institut für Analytische Chemie, Leipzig, Germany
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12
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Studying hydrogen bonding and dynamics of the acetylate groups of the Special Pair of Rhodobacter sphaeroides WT. Sci Rep 2019; 9:10528. [PMID: 31324886 PMCID: PMC6642110 DOI: 10.1038/s41598-019-46903-4] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/28/2019] [Accepted: 07/08/2019] [Indexed: 11/17/2022] Open
Abstract
Although the cofactors in the bacterial reaction centre of Rhodobacter sphaeroides wild type (WT) are arranged almost symmetrically in two branches, the light-induced electron transfer occurs selectively in one branch. As origin of this functional symmetry break, a hydrogen bond between the acetyl group of PL in the primary donor and His-L168 has been discussed. In this study, we investigate the existence and rigidity of this hydrogen bond with solid-state photo-CIDNP MAS NMR methods offering information on the local electronic structure due to highly sensitive and selective NMR experiments. On the time scale of the experiment, the hydrogen bond between PL and His-L168 appears to be stable and not to be affected by illumination confirming a structural asymmetry within the Special Pair.
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13
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Zill JC, Kansy M, Goss R, Alia A, Wilhelm C, Matysik J. 15N photo-CIDNP MAS NMR on both photosystems and magnetic field-dependent 13C photo-CIDNP MAS NMR in photosystem II of the diatom Phaeodactylum tricornutum. PHOTOSYNTHESIS RESEARCH 2019; 140:151-171. [PMID: 30194671 DOI: 10.1007/s11120-018-0578-9] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/19/2018] [Accepted: 08/24/2018] [Indexed: 05/14/2023]
Abstract
Diatoms contribute about 20-25% to the global marine productivity and are successful autotrophic players in all aquatic ecosystems, which raises the question whether this performance is caused by differences in their photosynthetic apparatus. Photo-CIDNP MAS NMR presents a unique tool to obtain insights into the reaction centres of photosystems (PS), by selective enhancement of NMR signals from both, the electron donor and the primary electron acceptor molecules. Here, we present the first observation of the solid-state photo-CIDNP effect in the pennate diatoms. In comparison to plant PSs, similar spectral patterns have been observed for PS I at 9.4 T and PS II at 4.7 T in the PSs of Phaeodactylum tricornutum. Studies at different magnetic fields reveal a surprising sign change of the 13C photo-CIDNP MAS NMR signals indicating an alternative arrangement of cofactors which allows to quench the Chl a donor triplet state in contrast to the situation in plant PS II. This unusual quenching mechanism is related to a carotenoid molecule in close vicinity to the Chl a donor. In addition to the photo-CIDNP MAS NMR signals arising from the donor and the primary electron acceptor cofactors, a complete set of signals of the imidazole ring ligating to the magnesium of Chl a can be observed.
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Affiliation(s)
- Jeremias C Zill
- Institute of Analytical Chemistry, University of Leipzig, Johannisallee 29, 04103, Leipzig, Germany
| | - Marcel Kansy
- Institute of Biology, University of Leipzig, Johannisallee 21-23, 04103, Leipzig, Germany
| | - Reimund Goss
- Institute of Biology, University of Leipzig, Johannisallee 21-23, 04103, Leipzig, Germany
| | - A Alia
- Leiden Institute of Chemistry, University of Leiden, Einsteinweg 55, P.O. Box 9502, 2300 RA, Leiden, The Netherlands
- Institute of Medical Physics and Biophysics, University of Leipzig, Härtelstr. 16-18, 04107, Leipzig, Germany
| | - Christian Wilhelm
- Institute of Biology, University of Leipzig, Johannisallee 21-23, 04103, Leipzig, Germany
| | - Jörg Matysik
- Institute of Analytical Chemistry, University of Leipzig, Johannisallee 29, 04103, Leipzig, Germany.
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14
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Sosnovsky DV, Lukzen NN, Vieth HM, Jeschke G, Gräsing D, Bielytskyi P, Matysik J, Ivanov KL. Magnetic field and orientation dependence of solid-state CIDNP. J Chem Phys 2019; 150:094105. [PMID: 30849872 DOI: 10.1063/1.5077078] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022] Open
Abstract
The magnetic field dependence of Chemically Induced Dynamic Nuclear Polarization (CIDNP) in solid-state systems is analyzed theoretically with the aim to explain the puzzling sign change of polarization found at low fields [D. Gräsing et al., Sci. Rep. 7, 12111 (2017)]. We exploit the analysis of polarization in terms of level crossings and level anti-crossings trying to identify the positions of features in the CIDNP field dependence with specific crossings between spin energy levels of the radical pair. Theoretical treatment of solid-state CIDNP reveals a strong orientation dependence of polarization due to the spin dynamics conditioned by anisotropic spin interactions. Specifically, different anisotropic CIDNP mechanisms become active at different magnetic fields and different molecular orientations. Consequently, the field dependence and orientation dependence of polarization need to be analyzed together in order to rationalize experimental observations. By considering both magnetic field and orientation dependence of CIDNP, we are able to explain the previously measured CIDNP field dependence in photosynthetic reaction centers and to obtain a good qualitative agreement between the experimental observations and theoretical results.
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Affiliation(s)
- Denis V Sosnovsky
- International Tomography Center, Siberian Branch of the Russian Academy of Science, Novosibirsk 630090, Russia
| | - Nikita N Lukzen
- International Tomography Center, Siberian Branch of the Russian Academy of Science, Novosibirsk 630090, Russia
| | - Hans-Martin Vieth
- International Tomography Center, Siberian Branch of the Russian Academy of Science, Novosibirsk 630090, Russia
| | - Gunnar Jeschke
- Department of Chemistry and Applied Biosciences, ETH Zürich, 8093 Zürich, Switzerland
| | - Daniel Gräsing
- Institut für Analytische Chemie, Universität Leipzig, 04103 Leipzig, Germany
| | - Pavlo Bielytskyi
- Institut für Analytische Chemie, Universität Leipzig, 04103 Leipzig, Germany
| | - Jörg Matysik
- Institut für Analytische Chemie, Universität Leipzig, 04103 Leipzig, Germany
| | - Konstantin L Ivanov
- International Tomography Center, Siberian Branch of the Russian Academy of Science, Novosibirsk 630090, Russia
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15
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Bielytskyi P, Gräsing D, Zahn S, Mote KR, Alia A, Madhu PK, Matysik J. Assignment of NMR resonances of protons covalently bound to photochemically active cofactors in photosynthetic reaction centers by 13C- 1H photo-CIDNP MAS-J-HMQC experiment. JOURNAL OF MAGNETIC RESONANCE (SAN DIEGO, CALIF. : 1997) 2019; 298:64-76. [PMID: 30529893 DOI: 10.1016/j.jmr.2018.11.013] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/02/2018] [Revised: 11/27/2018] [Accepted: 11/28/2018] [Indexed: 06/09/2023]
Abstract
Modified versions of through-bond heteronuclear correlation (HETCOR) experiments are presented to take advantage of the light-induced hyperpolarization that occurs on 13C nuclei due to the solid-state photochemically induced dynamic nuclear polarization (photo-CIDNP) effect. Such 13C-1H photo-CIDNP MAS-J-HMQC and photo-CIDNP MAS-J-HSQC experiments are applied to acquire the 2D 13C-1H correlation spectra of selectively 13C-labeled photochemically active cofactors in the frozen quinone-blocked photosynthetic reaction center (RC) of the purple bacterium Rhodobacter (R.) sphaeroides wild-type (WT). Resulting spectra contain no correlation peaks arising from the protein backbone, which greatly simplifies the assignment of aliphatic region. Based on the photo-CIDNP MAS-J-HMQC NMR experiment, we obtained assignment of selective 1H NMR resonances of the cofactors involved in the electron transfer process in the RC and compared them with values theoretically predicted by density functional theory (DFT) calculation as well as with the chemical shifts obtained from monomeric cofactors in the solution. We also compared proton chemical shifts obtained by photo-CIDNP MAS-J-HMQC experiment under continuous illumination with the ones obtained in dark by classical cross-polarization (CP) HETCOR. We expect that the proposed approach will become a method of choice for obtaining 1H chemical shift maps of the active cofactors in photosynthetic RCs and will aid the interpretation of heteronuclear spin-torch experiments.
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Affiliation(s)
- Pavlo Bielytskyi
- Institut für Analytische Chemie, Universität Leipzig, Linnéstraße 3, D-04103 Leipzig, Germany
| | - Daniel Gräsing
- Institut für Analytische Chemie, Universität Leipzig, Linnéstraße 3, D-04103 Leipzig, Germany
| | - Stefan Zahn
- Leibniz Institute of Surface Engineering (IOM), Permoserstraße 15, D-04318 Leipzig, Germany
| | - Kaustubh R Mote
- TIFR Centre for Interdisciplinary Sciences, Tata Institute of Fundamental Research, 36/P Gopanpally Village, Serilingampally Mandal, Ranga Reddy District, Hyderabad 500107, India
| | - A Alia
- Leiden Institute of Chemistry, Leiden University, Einsteinweg 55, 2301 RA Leiden, the Netherlands; Institut für Medizinische Physik und Biophysik, Universität Leipzig, Härtelstr. 16-18, D-04107 Leipzig, Germany
| | - P K Madhu
- TIFR Centre for Interdisciplinary Sciences, Tata Institute of Fundamental Research, 36/P Gopanpally Village, Serilingampally Mandal, Ranga Reddy District, Hyderabad 500107, India
| | - Jörg Matysik
- Institut für Analytische Chemie, Universität Leipzig, Linnéstraße 3, D-04103 Leipzig, Germany.
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16
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Bielytskyi P, Gräsing D, Mote KR, Sai Sankar Gupta KB, Vega S, Madhu PK, Alia A, Matysik J. 13C → 1H transfer of light-induced hyperpolarization allows for selective detection of protons in frozen photosynthetic reaction center. JOURNAL OF MAGNETIC RESONANCE (SAN DIEGO, CALIF. : 1997) 2018; 293:82-91. [PMID: 29909081 DOI: 10.1016/j.jmr.2018.06.003] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/24/2018] [Revised: 06/06/2018] [Accepted: 06/07/2018] [Indexed: 05/14/2023]
Abstract
In the present study, we exploit the light-induced hyperpolarization occurring on 13C nuclei due to the solid-state photochemically induced dynamic nuclear polarization (photo-CIDNP) effect to boost the NMR signal intensity of selected protons via inverse cross-polarization. Such hyperpolarization transfer is implemented into 1H-detected two-dimensional 13C-1H correlation magic-angle-spinning (MAS) NMR experiment to study protons in frozen photosynthetic reaction centers (RCs). As a first trial, the performance of such an experiment is tested on selectively 13C labeled RCs from the purple bacteria of Rhodobacter sphaeroides. We observed response from the protons belonging to the photochemically active cofactors in their native protein environment. Such an approach is a potential heteronuclear spin-torch experiment which could be complementary to the classical heteronuclear correlation (HETCOR) experiments for mapping proton chemical shifts of photosynthetic cofactors and to understand the role of the proton pool around the electron donors in the electron transfer process occurring during photosynthesis.
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Affiliation(s)
- Pavlo Bielytskyi
- Institut für Analytische Chemie, Universität Leipzig, Linnéstraße 3, D-04103 Leipzig, Germany
| | - Daniel Gräsing
- Institut für Analytische Chemie, Universität Leipzig, Linnéstraße 3, D-04103 Leipzig, Germany
| | - Kaustubh R Mote
- TIFR Centre for Interdisciplinary Sciences, Tata Institute of Fundamental Research, 36/P Gopanpally Village, Serilingampally Mandal, Ranga Reddy District, Hyderabad 500107, India
| | | | - Shimon Vega
- Department of Chemical Physics, Weizmann Institute of Science, 76100 Rechovot, Israel
| | - P K Madhu
- TIFR Centre for Interdisciplinary Sciences, Tata Institute of Fundamental Research, 36/P Gopanpally Village, Serilingampally Mandal, Ranga Reddy District, Hyderabad 500107, India; Department of Chemical Sciences, Tata Institute of Fundamental Research, Homi Bhabha Road, Colaba, Mumbai 400005, India
| | - A Alia
- Leiden Institute of Chemistry, Leiden University, Einsteinweg 55, 2301 RA Leiden, The Netherlands; Institut für Medizinische Physik und Biophysik, Universität Leipzig, Härtelstr. 16-18, D-04107 Leipzig, Germany
| | - Jörg Matysik
- Institut für Analytische Chemie, Universität Leipzig, Linnéstraße 3, D-04103 Leipzig, Germany.
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17
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Zill JC, He Z, Tank M, Ferlez BH, Canniffe DP, Lahav Y, Bellstedt P, Alia A, Schapiro I, Golbeck JH, Bryant DA, Matysik J. 15N photo-CIDNP MAS NMR analysis of reaction centers of Chloracidobacterium thermophilum. PHOTOSYNTHESIS RESEARCH 2018; 137:295-305. [PMID: 29603082 DOI: 10.1007/s11120-018-0504-1] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/05/2018] [Accepted: 03/23/2018] [Indexed: 06/08/2023]
Abstract
Photochemically induced dynamic nuclear polarization (photo-CIDNP) has been observed in the homodimeric, type-1 photochemical reaction centers (RCs) of the acidobacterium, Chloracidobacterium (Cab.) thermophilum, by 15N magic-angle spinning (MAS) solid-state NMR under continuous white-light illumination. Three light-induced emissive (negative) signals are detected. In the RCs of Cab. thermophilum, three types of (bacterio)chlorophylls have previously been identified: bacteriochlorophyll a (BChl a), chlorophyll a (Chl a), and Zn-bacteriochlorophyll a' (Zn-BChl a') (Tsukatani et al. in J Biol Chem 287:5720-5732, 2012). Based upon experimental and quantum chemical 15N NMR data, we assign the observed signals to a Chl a cofactor. We exclude Zn-BChl because of its measured spectroscopic properties. We conclude that Chl a is the primary electron acceptor, which implies that the primary donor is most likely Zn-BChl a'. Chl a and 81-OH Chl a have been shown to be the primary electron acceptors in green sulfur bacteria and heliobacteria, respectively, and thus a Chl a molecule serves this role in all known homodimeric type-1 RCs.
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Affiliation(s)
- Jeremias C Zill
- Institute of Analytical Chemistry, University of Leipzig, Johannisallee 29, 04103, Leipzig, Germany
| | - Zhihui He
- Department of Biochemistry and Molecular Biology, The Pennsylvania State University, University Park, PA, 16802, USA
| | - Marcus Tank
- Department of Biochemistry and Molecular Biology, The Pennsylvania State University, University Park, PA, 16802, USA
- Department of Biological Sciences, Tokyo Metropolitan University, 1-1 Minami-Osawa, Hachioji-shi, Tokyo, 192-0397, Japan
| | - Bryan H Ferlez
- Department of Biochemistry and Molecular Biology, The Pennsylvania State University, University Park, PA, 16802, USA
| | - Daniel P Canniffe
- Department of Biochemistry and Molecular Biology, The Pennsylvania State University, University Park, PA, 16802, USA
| | - Yigal Lahav
- Fritz Haber Center of Molecular Dynamics, Institute of Chemistry, The Hebrew University of Jerusalem, 91904, Jerusalem, Israel
- Migal-Galilee Research Institute, S. Industrial Zone, 12100, Kiryat Shmona, Israel
| | - Peter Bellstedt
- Institute of Organic and Macromolecular Chemistry, Friedrich-Schiller-Universität Jena, Humboldtstraße 10, 07743, Jena, Germany
| | - A Alia
- Institute of Analytical Chemistry, University of Leipzig, Johannisallee 29, 04103, Leipzig, Germany
- Leiden Institute of Chemistry, University of Leiden, Einsteinweg 55, P.O. Box 9502, 2300 RA, Leiden, The Netherlands
- Institute of Medical Physics and Biophysics, University of Leipzig, Härtelstr. 16-18, 04107, Leipzig, Germany
| | - Igor Schapiro
- Fritz Haber Center of Molecular Dynamics, Institute of Chemistry, The Hebrew University of Jerusalem, 91904, Jerusalem, Israel
| | - John H Golbeck
- Department of Biochemistry and Molecular Biology, The Pennsylvania State University, University Park, PA, 16802, USA
- Department of Chemistry, The Pennsylvania State University, University Park, PA, 16802, USA
| | - Donald A Bryant
- Department of Biochemistry and Molecular Biology, The Pennsylvania State University, University Park, PA, 16802, USA
- Department of Chemistry and Biochemistry, Montana State University, Bozeman, MT, 59717, USA
| | - Jörg Matysik
- Institute of Analytical Chemistry, University of Leipzig, Johannisallee 29, 04103, Leipzig, Germany.
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18
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Gräsing D, Bielytskyi P, Céspedes-Camacho IF, Alia A, Marquardsen T, Engelke F, Matysik J. Field-cycling NMR with high-resolution detection under magic-angle spinning: determination of field-window for nuclear hyperpolarization in a photosynthetic reaction center. Sci Rep 2017; 7:12111. [PMID: 28935961 PMCID: PMC5608766 DOI: 10.1038/s41598-017-10413-y] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/10/2017] [Accepted: 08/09/2017] [Indexed: 11/09/2022] Open
Abstract
Several parameters in NMR depend on the magnetic field strength. Field-cycling NMR is an elegant way to explore the field dependence of these properties. The technique is well developed for solution state and in relaxometry. Here, a shuttle system with magic-angle spinning (MAS) detection is presented to allow for field-dependent studies on solids. The function of this system is demonstrated by exploring the magnetic field dependence of the solid-state photochemically induced nuclear polarization (photo-CIDNP) effect. The effect allows for strong nuclear spin-hyperpolarization in light-induced spin-correlated radical pairs (SCRPs) under solid-state conditions. To this end, 13C MAS NMR is applied to a photosynthetic reaction center (RC) of the purple bacterium Rhodobacter (R.) sphaeroides wildtype (WT). For induction of the effect in the stray field of the magnet and its subsequent observation at 9.4 T under MAS NMR conditions, the sample is shuttled by the use of an aerodynamically driven sample transfer technique. In the RC, we observe the effect down to 0.25 T allowing to determine the window for the occurrence of the effect to be between about 0.2 and 20 T.
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Affiliation(s)
- Daniel Gräsing
- Institut für Analytische Chemie, Universität Leipzig, Linnéstraße 3, D-04103, Leipzig, Germany
| | - Pavlo Bielytskyi
- Institut für Analytische Chemie, Universität Leipzig, Linnéstraße 3, D-04103, Leipzig, Germany
| | - Isaac F Céspedes-Camacho
- Institut für Analytische Chemie, Universität Leipzig, Linnéstraße 3, D-04103, Leipzig, Germany.,Escuela de Química, Tecnológico de Costa Rica, Sede Central, 30101, Cartago, Costa Rica
| | - A Alia
- Institut für Medizinische Physik und Biophysik, Universität Leipzig, Härtelstr. 16-18, D-04107, Leipzig, Germany.,Leiden Institute of Chemistry, 2333, Leiden, The Netherlands
| | | | - Frank Engelke
- Bruker BioSpin GmbH, Silberstreifen 4, D-76287, Rheinstetten, Germany
| | - Jörg Matysik
- Institut für Analytische Chemie, Universität Leipzig, Linnéstraße 3, D-04103, Leipzig, Germany.
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19
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Paul S, Kiryutin AS, Guo J, Ivanov KL, Matysik J, Yurkovskaya AV, Wang X. Magnetic field effect in natural cryptochrome explored with model compound. Sci Rep 2017; 7:11892. [PMID: 28928466 PMCID: PMC5605708 DOI: 10.1038/s41598-017-10356-4] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/06/2017] [Accepted: 08/02/2017] [Indexed: 11/09/2022] Open
Abstract
Many animals sense the Earth's magnetic-field and use it for navigation. It is proposed that a light-dependent quantum effect in cryptochrome proteins, residing in the retina, allows for such an iron-free spin-chemical compass. The photochemical processes, spin-dynamics and its magnetic field dependence in natural cryptochrome are not fully understood by the in vivo and in vitro studies. For a deeper insight into these biophysical mechanisms in cryptochrome, we had introduced a flavin-tryptophan dyad (F10T). Here we present the magnetic field dependence of 1H photo-CIDNP NMR on F10T and a theoretical model for low-field photo-CIDNP of F10T. This model provides mixing mechanism of energy-levels and spin-dynamics at low magnetic fields. Photo-CIDNP has been observed even at Earth's magnetic field (~0.05 mT). These experiments prove F10T to be an excellent model compound establishing the key mechanism of avian-magnetoreception and provide insight into the optimal behaviour of cryptochrome at Earth's magnetic field.
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Affiliation(s)
- Shubhajit Paul
- Institut für Analytische Chemie, Universität Leipzig, Linnéstr, 3, D-04103, Leipzig, Germany
| | - Alexey S Kiryutin
- International Tomography Center, Siberian Branch of the Russian Academy of Science, Institutskaya 3a, Novosibirsk, 630090, Russia
- Novosibirsk State University, Pirogova 2, Novosibirsk, 630090, Russia
| | - Jinping Guo
- Department of Chemistry and Biology, College of Science, National University of Defense Technology, 410073, Changsha, China
| | - Konstantin L Ivanov
- International Tomography Center, Siberian Branch of the Russian Academy of Science, Institutskaya 3a, Novosibirsk, 630090, Russia
- Novosibirsk State University, Pirogova 2, Novosibirsk, 630090, Russia
| | - Jörg Matysik
- Institut für Analytische Chemie, Universität Leipzig, Linnéstr, 3, D-04103, Leipzig, Germany
| | - Alexandra V Yurkovskaya
- International Tomography Center, Siberian Branch of the Russian Academy of Science, Institutskaya 3a, Novosibirsk, 630090, Russia
- Novosibirsk State University, Pirogova 2, Novosibirsk, 630090, Russia
| | - Xiaojie Wang
- Department of Chemistry and Biology, College of Science, National University of Defense Technology, 410073, Changsha, China.
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20
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Najdanova M, Gräsing D, Alia A, Matysik J. Analysis of the Electronic Structure of the Special Pair of a Bacterial Photosynthetic Reaction Center by 13 C Photochemically Induced Dynamic Nuclear Polarization Magic-Angle Spinning NMR Using a Double-Quantum Axis. Photochem Photobiol 2017; 94:69-80. [PMID: 28746728 DOI: 10.1111/php.12812] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/24/2017] [Accepted: 07/04/2017] [Indexed: 11/28/2022]
Abstract
The origin of the functional symmetry break in bacterial photosynthesis challenges since several decades. Although structurally very similar, the two branches of cofactors in the reaction center (RC) protein complex act very differently. Upon photochemical excitation, an electron is transported along one branch, while the other remains inactive. Photochemically induced dynamic nuclear polarization (photo-CIDNP) magic-angle spinning (MAS) 13 C NMR revealed that the two bacteriochlorophyll cofactors forming the "Special Pair" donor dimer are already well distinguished in the electronic ground state. These previous studies are relying solely on 13 C-13 C correlation experiments as radio-frequency-driven recoupling (RFDR) and dipolar-assisted rotational resonance (DARR). Obviously, the chemical-shift assignment is difficult in a dimer of tetrapyrrole macrocycles, having eight pyrrole rings of similar chemical shifts. To overcome this problem, an INADEQUATE type of experiment using a POST C7 symmetry-based approach is applied to selectively isotope-labeled bacterial RC of Rhodobacter (R.) sphaeroides wild type (WT). We, therefore, were able to distinguish unresolved sites of the macromolecular dimer. The obtained chemical-shift pattern is in-line with a concentric assembly of negative charge within the common center of the Special Pair supermolecule in the electronic ground state.
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Affiliation(s)
- Marija Najdanova
- Institute of Analytical Chemistry, University of Leipzig, Leipzig, Germany
| | - Daniel Gräsing
- Institute of Analytical Chemistry, University of Leipzig, Leipzig, Germany
| | - A Alia
- Institute of Medical Physics and Biophysics, University of Leipzig, Leipzig, Germany.,Leiden Institute of Chemistry, Leiden University, Leiden, The Netherlands
| | - Jörg Matysik
- Institute of Analytical Chemistry, University of Leipzig, Leipzig, Germany
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21
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Zill JC, Kansy M, Goss R, Köhler L, Alia A, Wilhelm C, Matysik J. Photo-CIDNP in the Reaction Center of the Diatom Cyclotella meneghiniana Observed by 13C MAS NMR. Z PHYS CHEM 2016. [DOI: 10.1515/zpch-2016-0806] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
Abstract
Abstract
Photo-CIDNP MAS NMR presents a unique tool to obtain insight into the photosynthetic reaction centers (RCs) of bacteria and plants. Using the dramatic enhancement of sensitivity and selectivity of the solid-state photo-CIDNP effect, structural as well as functional information can be obtained from the cofactor molecules forming a light-induced spin-correlated radical pair (SCRP) in a given reaction center. Here we demonstrate that the effect can be observed in a further species, which belongs neither to the plant nor the bacteria kingdom. Cyclotella (C.) meneghiniana is a member of the diatom phylum and, therefore, belongs to the kingdom of chromista. Chromista are some of the most productive organisms in nature, even in comparison to trees and terrestrial grasses. The observation of the effect in chromista indicates that the effect occurs in all photosynthetic organisms and completes the list with the last phototrophic kingdoms. Our data also demonstrate that the photo- and spin-chemical machineries of photosystem I of plants and chromista are very similar with respect to structure as well as function.
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Affiliation(s)
- Jeremias C. Zill
- University of Leipzig, Institute of Analytical Chemistry, Johannisallee 29, D-04103 Leipzig, Germany
| | - Marcel Kansy
- University of Leipzig, Institute of Biology, Abteilung Pflanzenphysiologie, Johannisallee 21-23, D-04103 Leipzig, Germany
| | - Reimund Goss
- University of Leipzig, Institute of Biology, Abteilung Pflanzenphysiologie, Johannisallee 21-23, D-04103 Leipzig, Germany
| | - Lisa Köhler
- University of Leipzig, Institute of Analytical Chemistry, Johannisallee 29, D-04103 Leipzig, Germany
| | - A. Alia
- University of Leiden, Leiden Institute of Chemistry, Einsteinweg 55, P.O. Box 9502, 2300 RA Leiden, The Netherlands
- University of Leipzig, Institute of Medical Physics and Biophysics, Härtelstr. 16-18, D-04107 Leipzig, Germany
| | - Christian Wilhelm
- University of Leipzig, Institute of Biology, Abteilung Pflanzenphysiologie, Johannisallee 21-23, D-04103 Leipzig, Germany
| | - Jörg Matysik
- University of Leipzig, Institute of Analytical Chemistry, Johannisallee 29, D-04103 Leipzig, Germany
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22
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Milanovsky GE, Shuvalov VA, Semenov AY, Cherepanov DA. Elastic Vibrations in the Photosynthetic Bacterial Reaction Center Coupled to the Primary Charge Separation: Implications from Molecular Dynamics Simulations and Stochastic Langevin Approach. J Phys Chem B 2015; 119:13656-67. [PMID: 26148224 DOI: 10.1021/acs.jpcb.5b03036] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Primary electron transfer reactions in the bacterial reaction center are difficult for theoretical explication: the reaction kinetics, almost unalterable over a wide range of temperature and free energy changes, revealed oscillatory features observed initially by Shuvalov and coauthors (1997, 2002). Here the reaction mechanism was studied by molecular dynamics and analyzed within a phenomenological Langevin approach. The spectral function of polarization around the bacteriochlorophyll special pair PLPM and the dielectric response upon the formation of PL(+)PM(-) dipole within the special pair were calculated. The system response was approximated by Langevin oscillators; the respective frequencies, friction, and energy coupling coefficients were determined. The protein dynamics around PL and PM were distinctly asymmetric. The polarization around PL included slow modes with the frequency 30-80 cm(-1) and the total amplitude of 130 mV. Two main low-frequency modes of protein response around PM had frequencies of 95 and 155 cm(-1) and the total amplitude of 30 mV. In addition, a slowly damping mode with the frequency of 118 cm(-1) and the damping time >1.1 ps was coupled to the formation of PL(+)PM(-) dipole. It was attributed to elastic vibrations of α-helices in the vicinity of PLPM. The proposed trapping of P excitation energy in the form of the elastic vibrations can rationalize the observed properties of the primary electron transfer reactions, namely, the unusual temperature and ΔG dependences, the oscillating phenomena in kinetics, and the asymmetry of the charge separation reactions.
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Affiliation(s)
- Georgy E Milanovsky
- A. N. Belozersky Institute of Physical-Chemical Biology, Moscow State University , Leninskiye Gory, 119992 Moscow, Russia
| | - Vladimir A Shuvalov
- A. N. Belozersky Institute of Physical-Chemical Biology, Moscow State University , Leninskiye Gory, 119992 Moscow, Russia.,N. N. Semenov Institute of Chemical Physics, Russian Academy of Sciences , Kosygina st., 4, 117977 Moscow, Russia
| | - Alexey Yu Semenov
- A. N. Belozersky Institute of Physical-Chemical Biology, Moscow State University , Leninskiye Gory, 119992 Moscow, Russia.,N. N. Semenov Institute of Chemical Physics, Russian Academy of Sciences , Kosygina st., 4, 117977 Moscow, Russia
| | - Dmitry A Cherepanov
- A. N. Belozersky Institute of Physical-Chemical Biology, Moscow State University , Leninskiye Gory, 119992 Moscow, Russia.,A. N. Frumkin Institute of Physical Chemistry and Electrochemistry, Russian Academy of Sciences , 31, Leninsky Prospect, 119071 Moscow, Russia
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23
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Paul S, Bode BE, Matysik J, Alia A. Photochemically Induced Dynamic Nuclear Polarization Observed by Solid-State NMR in a Uniformly (13)C-Isotope-Labeled Photosynthetic Reaction Center. J Phys Chem B 2015; 119:13897-903. [PMID: 26110356 DOI: 10.1021/acs.jpcb.5b04542] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
A sample of solubilized and quinone-depleted reaction centers from the purple bacterium Rhodobacter (R.) sphaeroides wild type has been prepared entirely (13)C and (15)N isotope labeled at all positions of the protein as well as of the cofactors. In this sample, the occurrence of the solid-state photo-CIDNP (photochemically induced dynamic nuclear polarization) effect has been probed by (13)C solid-state magic-angle spinning NMR under illumination. Under continuous illumination, signal intensities are modified by the three-spin mixing (TSM) mechanism. Time-resolved illumination experiments reveal the occurrence of light-induced nuclear polarization on the time scale of hundreds of microseconds, initially dominated by the transient polarization of the singlet branch of the radical-pair mechanism. A first kinetic analysis shows that the lifetime of the polarization from the singlet branch, indicated by the enhanced absorptive intensities of the signals from aliphatic carbons, is significantly extended. Upon arrival of the polarization from the triplet decay branch, emissive polarization caused by the TSM mechanism is observed. Also, this arrival is significantly delayed. The decay of TSM polarization occurs in two steps, assigned to intra- and intermolecular spin diffusion.
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Affiliation(s)
- Shubhajit Paul
- Universität Leipzig , Institut für Analytische Chemie, Linnéstr. 3, D-04103 Leipzig, Germany
| | - Bela E Bode
- EaStCHEM School of Chemistry, Biomedical Sciences Research Complex and Centre of Magnetic Resonance, University of St Andrews , St Andrews KY16 9ST, Scotland
| | - Jörg Matysik
- Universität Leipzig , Institut für Analytische Chemie, Linnéstr. 3, D-04103 Leipzig, Germany
| | - A Alia
- Universität Leipzig , Institut für Medizinische Physik und Biophysik, Härtelstr. 16, D-04107 Leipzig, Germany.,Gorlaeus Laboratoria, Leiden Institute of Chemistry , Einsteinweg 55, P.O. Box 9502, 2300 RA Leiden, The Netherlands
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24
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Najdanova M, Janssen GJ, de Groot HJM, Matysik J, Alia A. Analysis of electron donors in photosystems in oxygenic photosynthesis by photo-CIDNP MAS NMR. JOURNAL OF PHOTOCHEMISTRY AND PHOTOBIOLOGY B-BIOLOGY 2015; 152:261-71. [PMID: 26282679 DOI: 10.1016/j.jphotobiol.2015.08.001] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/08/2015] [Revised: 08/04/2015] [Accepted: 08/05/2015] [Indexed: 10/23/2022]
Abstract
Both photosystem I and photosystem II are considerably similar in molecular architecture but they operate at very different electrochemical potentials. The origin of the different redox properties of these RCs is not yet clear. In recent years, insight was gained into the electronic structure of photosynthetic cofactors through the application of photochemically induced dynamic nuclear polarization (photo-CIDNP) with magic-angle spinning NMR (MAS NMR). Non-Boltzmann populated nuclear spin states of the radical pair lead to strongly enhanced signal intensities that allow one to observe the solid-state photo-CIDNP effect from both photosystem I and II from isolated reaction center of spinach (Spinacia oleracea) and duckweed (Spirodela oligorrhiza) and from the intact cells of the cyanobacterium Synechocystis by (13)C and (15)N MAS NMR. This review provides an overview on the photo-CIDNP MAS NMR studies performed on PSI and PSII that provide important ingredients toward reconstruction of the electronic structures of the donors in PSI and PSII.
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Affiliation(s)
- M Najdanova
- University of Leipzig, Institute of Analytical Chemistry, Johannisallee 29, D-04103 Leipzig, Germany
| | - G J Janssen
- University of Leiden, Leiden Institute of Chemistry, Einsteinweg 55, P.O. Box 9502, 2300 RA Leiden, The Netherlands
| | - H J M de Groot
- University of Leiden, Leiden Institute of Chemistry, Einsteinweg 55, P.O. Box 9502, 2300 RA Leiden, The Netherlands
| | - J Matysik
- University of Leipzig, Institute of Analytical Chemistry, Johannisallee 29, D-04103 Leipzig, Germany
| | - A Alia
- University of Leiden, Leiden Institute of Chemistry, Einsteinweg 55, P.O. Box 9502, 2300 RA Leiden, The Netherlands; University of Leipzig, Institute of Medical Physics and Biophysics, Härtelstr. 16-18, D-04107 Leipzig, Germany.
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25
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Kothe G, Lukaschek M, Link G, Kacprzak S, Illarionov B, Fischer M, Eisenreich W, Bacher A, Weber S. Detecting a new source for photochemically induced dynamic nuclear polarization in the LOV2 domain of phototropin by magnetic-field dependent (13)C NMR spectroscopy. J Phys Chem B 2014; 118:11622-32. [PMID: 25207844 DOI: 10.1021/jp507134y] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Phototropin is a flavin mononucleotide (FMN) containing blue-light receptor, which regulates, governed by its two LOV domains, the phototropic response of higher plants. Upon photoexcitation, the FMN cofactor triplet state, (3)F, reacts with a nearby cysteine to form a covalent adduct. Cysteine-to-alanine mutants of LOV domains instead generate a flavin radical upon illumination. Here, we explore the formation of photochemically induced dynamic nuclear polarization (CIDNP) in LOV2-C450A of Avena sativa phototropin and demonstrate that photo-CIDNP observed in solution (13)C NMR spectra can reliably be interpreted in terms of solid-state mechanisms including a novel triplet mechanism. To minimize cross-polarization, which transfers light-induced magnetization to adjacent (13)C nuclei, our experiments were performed on proteins reconstituted with specifically (13)C-labeled flavins. Two potential sources for photo-CIDNP can be identified: The photogenerated triplet state, (3)F, and the triplet radical pair (3)(F(-•)W(+•)), formed by electron abstraction of (3)F from tryptophan W491. To separate the two contributions, photo-CIDNP studies were performed at four different magnetic fields ranging from 4.7 to 11.8 T. Analysis revealed that, at fields <9 T, both (3)(F(-•)W(+•)) and (3)F contribute to photo-CIDNP, whereas at high magnetic fields, the calculated enhancement factors of (3)F agree favorably with their experimental counterparts. Thus, we have for the first time detected that a triplet state is the major source for photo-CIDNP in a photoactive protein. Since triplet states are frequently encountered upon photoexcitation of flavoproteins, the novel triplet mechanism opens up new means of studying electronic structures of the active cofactors in these proteins at atomic resolution.
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Affiliation(s)
- Gerd Kothe
- Institut für Physikalische Chemie, Albert-Ludwigs-Universität Freiburg , Albertstr. 21, 79104 Freiburg, Germany
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26
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Sai Sankar Gupta KB, Daviso E, Jeschke G, Alia A, Ernst M, Matysik J. Spectral editing through laser-flash excitation in two-dimensional photo-CIDNP MAS NMR experiments. JOURNAL OF MAGNETIC RESONANCE (SAN DIEGO, CALIF. : 1997) 2014; 246:9-17. [PMID: 25063951 DOI: 10.1016/j.jmr.2014.06.007] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/29/2014] [Revised: 06/08/2014] [Accepted: 06/17/2014] [Indexed: 05/14/2023]
Abstract
In solid-state photochemically induced dynamic nuclear polarization (photo-CIDNP) MAS NMR experiments, strong signal enhancement is observed from molecules forming a spin-correlated radical pair in a rigid matrix. Two-dimensional (13)C-(13)C dipolar-assisted rotational resonance (DARR) photo-CIDNP MAS NMR experiments have been applied to obtain exact chemical shift assignments from those cofactors. Under continuous illumination, the signals are enhanced via three-spin mixing (TSM) and differential decay (DD) and their intensity corresponds to the electron spin density in pz orbitals. In multiple-(13)C labelled samples, spin diffusion leads to propagation of signal enhancement to all (13)C spins. Under steady-state conditions, direct signal assignment is possible due to the uniform signal intensity. The original intensities, however, are inaccessible and the information of the local electron spin density is lost. Upon laser-flash illumination, the signal is enhanced via the classical radical pair mechanism (RPM). The obtained intensities are related to isotropic hyperfine interactions aiso and both enhanced absorptive and emissive lines can be observed due to differences in the sign of the local isotropic hyperfine interaction. Exploiting the mechanism of the polarization, selectivity can be increased by the novel time-resolved two-dimensional dipolar-assisted rotational resonance (DARR) MAS NMR experiment which simplifies the signal assignment compared to complex spectra of the same RCs obtained by continuous illumination. Here we present two-dimensional time-resolved photo-CIDNP MAS NMR experiments providing both directly: signal assignment and spectral editing by sign and strength of aiso. Hence, this experiment provides a direct key to the electronic structure of the correlated radical pair.
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Affiliation(s)
| | - Eugenio Daviso
- Leiden Institute of Chemistry, Leiden University, P.O. Box 9502, 2300 RA Leiden, The Netherlands; Francis Bitter Magnet Laboratory, Albany Street 150, NW14, Cambridge, MA 02139, USA
| | - Gunnar Jeschke
- ETH Zürich, Physical Chemistry, Wolfgang-Pauli-Strasse 10, 8093 Zürich, Switzerland
| | - A Alia
- Leiden Institute of Chemistry, Leiden University, P.O. Box 9502, 2300 RA Leiden, The Netherlands; Institut für Analytische Chemie, Universität Leipzig, Linnéstr. 3, 04103 Leipzig, Germany
| | - Matthias Ernst
- ETH Zürich, Physical Chemistry, Wolfgang-Pauli-Strasse 10, 8093 Zürich, Switzerland
| | - Jörg Matysik
- Leiden Institute of Chemistry, Leiden University, P.O. Box 9502, 2300 RA Leiden, The Netherlands; Institut für Analytische Chemie, Universität Leipzig, Linnéstr. 3, 04103 Leipzig, Germany.
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27
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Surendran Thamarath S, Alia A, Roy E, Sai Sankar Gupta KB, Golbeck JH, Matysik J. The field-dependence of the solid-state photo-CIDNP effect in two states of heliobacterial reaction centers. PHOTOSYNTHESIS RESEARCH 2013; 117:461-9. [PMID: 23722589 DOI: 10.1007/s11120-013-9854-x] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/31/2013] [Accepted: 05/14/2013] [Indexed: 05/14/2023]
Abstract
The solid-state photo-CIDNP (photochemically induced dynamic nuclear polarization) effect is studied in photosynthetic reaction centers of Heliobacillus mobilis at different magnetic fields by (13)C MAS (magic-angle spinning) NMR spectroscopy. Two active states of heliobacterial reaction centers are probed: an anaerobic preparation of heliochromatophores ("Braunstoff", German for "brown substance") as well as a preparation of cells after exposure to oxygen ("Grünstoff", "green substance"). Braunstoff shows significant increase of enhanced absorptive (positive) signals toward lower magnetic fields, which is interpreted in terms of an enhanced differential relaxation (DR) mechanism. In Grünstoff, the signals remain emissive (negative) at two fields, confirming that the influence of the DR mechanism is comparably low.
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Möbius K, Lubitz W, Savitsky A. High-field EPR on membrane proteins - crossing the gap to NMR. PROGRESS IN NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY 2013; 75:1-49. [PMID: 24160760 DOI: 10.1016/j.pnmrs.2013.07.002] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/17/2013] [Revised: 07/15/2013] [Accepted: 07/15/2013] [Indexed: 06/02/2023]
Abstract
In this review on advanced EPR spectroscopy, which addresses both the EPR and NMR communities, considerable emphasis is put on delineating the complementarity of NMR and EPR concerning the measurement of molecular interactions in large biomolecules. From these interactions, detailed information can be revealed on structure and dynamics of macromolecules embedded in solution- or solid-state environments. New developments in pulsed microwave and sweepable cryomagnet technology as well as ultrafast electronics for signal data handling and processing have pushed to new horizons the limits of EPR spectroscopy and its multifrequency extensions concerning the sensitivity of detection, the selectivity with respect to interactions, and the resolution in frequency and time domains. One of the most important advances has been the extension of EPR to high magnetic fields and microwave frequencies, very much in analogy to what happens in NMR. This is exemplified by referring to ongoing efforts for signal enhancement in both NMR and EPR double-resonance techniques by exploiting dynamic nuclear or electron spin polarization via unpaired electron spins and their electron-nuclear or electron-electron interactions. Signal and resolution enhancements are particularly spectacular for double-resonance techniques such as ENDOR and PELDOR at high magnetic fields. They provide greatly improved orientational selection for disordered samples that approaches single-crystal resolution at canonical g-tensor orientations - even for molecules with small g-anisotropies. Exchange of experience between the EPR and NMR communities allows for handling polarization and resolution improvement strategies in an optimal manner. Consequently, a dramatic improvement of EPR detection sensitivity could be achieved, even for short-lived paramagnetic reaction intermediates. Unique structural and dynamic information is thus revealed that can hardly be obtained by any other analytical techniques. Micromolar quantities of sample molecules have become sufficient to characterize stable and transient reaction intermediates of complex molecular systems - offering highly interesting applications for chemists, biochemists and molecular biologists. In three case studies, representative examples of advanced EPR spectroscopy are reviewed: (I) High-field PELDOR and ENDOR structure determination of cation-anion radical pairs in reaction centers from photosynthetic purple bacteria and cyanobacteria (Photosystem I); (II) High-field ENDOR and ELDOR-detected NMR spectroscopy on the oxygen-evolving complex of Photosystem II; and (III) High-field electron dipolar spectroscopy on nitroxide spin-labelled bacteriorhodopsin for structure-function studies. An extended conclusion with an outlook to further developments and applications is also presented.
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Affiliation(s)
- Klaus Möbius
- Max Planck Institute for Chemical Energy Conversion, Stiftstrasse 34-36, D-45470 Mülheim an der Ruhr, Germany; Department of Physics, Free University Berlin, Arnimallee 14, D-14195 Berlin, Germany.
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29
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Sai Sankar Gupta KB, Alia A, de Groot HJ, Matysik J. Symmetry Break of Special Pair: Photochemically Induced Dynamic Nuclear Polarization NMR Confirms Control by Nonaromatic Substituents. J Am Chem Soc 2013; 135:10382-7. [DOI: 10.1021/ja402238w] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
| | - A. Alia
- Institute
of Chemistry, Leiden University, P.O. Box
9502, 2300 RA Leiden, The
Netherlands
- Institut für Medizinische
Physik und Biophysik, Universität Leipzig, Härtelstraße 16-18, 04107 Leipzig, Germany
| | - Huub J.M. de Groot
- Institute
of Chemistry, Leiden University, P.O. Box
9502, 2300 RA Leiden, The
Netherlands
| | - Jörg Matysik
- Institute
of Chemistry, Leiden University, P.O. Box
9502, 2300 RA Leiden, The
Netherlands
- Institut für
Analytische
Chemie, Universität Leipzig, Linnèstr.
3, 04104 Leipzig, Germany
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30
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Alia A, Buda F, de Groot HJ, Matysik J. Solid-State NMR of Nanomachines Involved in Photosynthetic Energy Conversion. Annu Rev Biophys 2013; 42:675-99. [DOI: 10.1146/annurev-biophys-083012-130415] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Abstract
Magic-angle spinning NMR, often in combination with photo-CIDNP, is applied to determine how photosynthetic antennae and reaction centers are activated in the ground state to perform their biological function upon excitation by light. Molecular modeling resolves molecular mechanisms by way of computational integration of NMR data with other structure-function analyses. By taking evolutionary historical contingency into account, a better biophysical understanding is achieved. Chlorophyll cofactors and proteins go through self-assembly trajectories that are engineered during evolution and lead to highly homogeneous protein complexes optimized for exciton or charge transfer. Histidine-cofactor interactions allow biological nanomachines to lower energy barriers for light harvesting and charge separation in photosynthetic energy conversion. In contrast, in primordial chlorophyll antenna aggregates, excessive heterogeneity is paired with much less specific characteristics, and both exciton and charge-transfer character are encoded in the ground state.
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Affiliation(s)
- A. Alia
- Solid State NMR, Leiden Institute of Chemistry, Leiden University, Leiden 2300 RB, The Netherlands;, , ,
| | - Francesco Buda
- Solid State NMR, Leiden Institute of Chemistry, Leiden University, Leiden 2300 RB, The Netherlands;, , ,
| | - Huub J.M. de Groot
- Solid State NMR, Leiden Institute of Chemistry, Leiden University, Leiden 2300 RB, The Netherlands;, , ,
| | - Jörg Matysik
- Solid State NMR, Leiden Institute of Chemistry, Leiden University, Leiden 2300 RB, The Netherlands;, , ,
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31
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Sai Sankar Gupta KB, Alia A, Buda F, de Groot HJM, Matysik J. Bacteriopheophytin a in the active branch of the reaction center of rhodobacter sphaeroides is not disturbed by the protein matrix as shown by 13C photo-CIDNP MAS NMR. J Phys Chem B 2013; 117:3287-97. [PMID: 23452037 DOI: 10.1021/jp3121319] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
The electronic structure of bacteriopheophytin a (BPhe a), the primary electron acceptor (ΦA) in photosynthetic reaction centers (RCs) of the purple bacterium Rhodobacter sphaeroides, is investigated by photochemically induced dynamic nuclear polarization (photo-CIDNP) magic-angle spinning (MAS) NMR spectroscopy at atomic resolution. By using various isotope labeling systems, introduced by adding different (13)C selectively labeled δ-aminolevulinic acid precursors in the growing medium of R. sphaeroides wild type (WT), we were able to extract light-induced (13)C NMR signals originating from the primary electron acceptor. The assignments are backed by theoretical calculations. By comparison of these chemical shifts to those obtained from monomeric BPhe a in solution, it is demonstrated that ΦA in the active branch appears to be electronically close to free bacteriopheophytin. Hence, there is little effect of the protein surrounding on the cofactor functionally which contributes with its standard redox potential to the electron transfer process that is asymmetric.
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32
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Thamarath SS, Alia A, Daviso E, Mance D, Golbeck JH, Matysik J. Whole Cell Nuclear Magnetic Resonance Characterization of Two Photochemically Active States of the Photosynthetic Reaction Center in Heliobacteria. Biochemistry 2012; 51:5763-73. [DOI: 10.1021/bi300468y] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
| | - A. Alia
- Leiden Institute of Chemistry, Leiden University, Einsteinweg 55, 2300 RA Leiden,
The Netherlands
| | - Eugenio Daviso
- Leiden Institute of Chemistry, Leiden University, Einsteinweg 55, 2300 RA Leiden,
The Netherlands
| | - Deni Mance
- Leiden Institute of Chemistry, Leiden University, Einsteinweg 55, 2300 RA Leiden,
The Netherlands
| | - John H. Golbeck
- Department
of Biochemistry and
Molecular Biology and Department of Chemistry, Pennsylvania State University, 328 South Frear Laboratory, University
Park, Pennsylvania 16802, United States
| | - Jörg Matysik
- Leiden Institute of Chemistry, Leiden University, Einsteinweg 55, 2300 RA Leiden,
The Netherlands
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Thamarath SS, Bode BE, Prakash S, Sai Sankar Gupta KB, Alia A, Jeschke G, Matysik J. Electron Spin Density Distribution in the Special Pair Triplet of Rhodobacter sphaeroides R26 Revealed by Magnetic Field Dependence of the Solid-State Photo-CIDNP Effect. J Am Chem Soc 2012; 134:5921-30. [DOI: 10.1021/ja2117377] [Citation(s) in RCA: 40] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
| | - Bela E. Bode
- Leiden Institute of Chemistry, Leiden University, 2300 RA Leiden, The Netherlands
- EaStCHEM and Biomedical Sciences
Research Complex, University of St Andrews, St Andrews, KY16 9ST, Scotland
| | - Shipra Prakash
- Leiden Institute of Chemistry, Leiden University, 2300 RA Leiden, The Netherlands
| | | | - A. Alia
- Leiden Institute of Chemistry, Leiden University, 2300 RA Leiden, The Netherlands
| | - Gunnar Jeschke
- Institut für Physikalische
Chemie, Eidgenössische Technische Hochschule, Zürich, Switzerland
| | - Jörg Matysik
- Leiden Institute of Chemistry, Leiden University, 2300 RA Leiden, The Netherlands
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Janssen GJ, Roy E, Matysik J, Alia A. N Photo-CIDNP MAS NMR To Reveal Functional Heterogeneity in Electron Donor of Different Plant Organisms. APPLIED MAGNETIC RESONANCE 2012; 42:57-67. [PMID: 22303078 PMCID: PMC3260425 DOI: 10.1007/s00723-011-0283-8] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/19/2011] [Revised: 08/31/2011] [Indexed: 05/27/2023]
Abstract
In plants and cyanobacteria, two light-driven electron pumps, photosystems I and II (PSI, PSII), facilitate electron transfer from water to carbon dioxide with quantum efficiency close to unity. While similar in structure and function, the reaction centers of PSI and PSII operate at widely different potentials with PSI being the strongest reducing agent known in living nature. Photochemically induced dynamic nuclear polarization (photo-CIDNP) in magic-angle spinning (MAS) nuclear magnetic resonance (NMR) measurements provides direct excess to the heart of large photosynthetic complexes (A. Diller, Alia, E. Roy, P. Gast, H.J. van Gorkom, J. Zaanen, H.J.M. de Groot, C. Glaubitz, J. Matysik, Photosynth. Res. 84, 303-308, 2005; Alia, E. Roy, P. Gast, H.J. van Gorkom, H.J.M. de Groot, G. Jeschke, J. Matysik, J. Am. Chem. Soc. 126, 12819-12826, 2004). By combining the dramatic signal increase obtained from the solid-state photo-CIDNP effect with (15)N isotope labeling of PSI, we were able to map the electron spin density in the active cofactors of PSI and study primary charge separation at atomic level. We compare data obtained from two different PSI proteins, one from spinach (Spinacia oleracea) and other from the aquatic plant duckweed (Spirodella oligorrhiza). Results demonstrate a large flexibility of the PSI in terms of its electronic architecture while their electronic ground states are strictly conserved.
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Affiliation(s)
- Geertje J. Janssen
- Leiden Institute of Chemistry, Leiden University, P.O. box 9502, 2300 RA Leiden, The Netherlands
| | - Esha Roy
- Leiden Institute of Chemistry, Leiden University, P.O. box 9502, 2300 RA Leiden, The Netherlands
| | - Jörg Matysik
- Leiden Institute of Chemistry, Leiden University, P.O. box 9502, 2300 RA Leiden, The Netherlands
| | - A. Alia
- Leiden Institute of Chemistry, Leiden University, P.O. box 9502, 2300 RA Leiden, The Netherlands
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35
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The Solid-State Photo-CIDNP Effect and Its Analytical Application. HYPERPOLARIZATION METHODS IN NMR SPECTROSCOPY 2012; 338:105-21. [DOI: 10.1007/128_2012_357] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
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Hu KN. Polarizing agents and mechanisms for high-field dynamic nuclear polarization of frozen dielectric solids. SOLID STATE NUCLEAR MAGNETIC RESONANCE 2011; 40:31-41. [PMID: 21855299 PMCID: PMC3171565 DOI: 10.1016/j.ssnmr.2011.08.001] [Citation(s) in RCA: 46] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/28/2011] [Revised: 08/01/2011] [Accepted: 08/01/2011] [Indexed: 05/05/2023]
Abstract
This article provides an overview of polarizing mechanisms involved in high-frequency dynamic nuclear polarization (DNP) of frozen biological samples at temperatures maintained using liquid nitrogen, compatible with contemporary magic-angle spinning (MAS) nuclear magnetic resonance (NMR). Typical DNP experiments require unpaired electrons that are usually exogenous in samples via paramagnetic doping with polarizing agents. Thus, the resulting nuclear polarization mechanism depends on the electron and nuclear spin interactions induced by the paramagnetic species. The Overhauser Effect (OE) DNP, which relies on time-dependent spin-spin interactions, is excluded from our discussion due the lack of conducting electrons in frozen aqueous solutions containing biological entities. DNP of particular interest to us relies primarily on time-independent, spin-spin interactions for significant electron-nucleus polarization transfer through mechanisms such as the Solid Effect (SE), the Cross Effect (CE) or Thermal Mixing (TM), involving one, two or multiple electron spins, respectively. Derived from monomeric radicals initially used in high-field DNP experiments, bi- or multiple-radical polarizing agents facilitate CE/TM to generate significant NMR signal enhancements in dielectric solids at low temperatures (<100 K). For example, large DNP enhancements (∼300 times at 5 T) from a biologically compatible biradical, 1-(TEMPO-4-oxy)-3-(TEMPO-4-amino)propan-2-ol (TOTAPOL), have enabled high-resolution MAS NMR in sample systems existing in submicron domains or embedded in larger biomolecular complexes. The scope of this review is focused on recently developed DNP polarizing agents for high-field applications and leads up to future developments per the CE DNP mechanism. Because DNP experiments are feasible with a solid-state microwave source when performed at <20K, nuclear polarization using lower microwave power (<100 mW) is possible by forcing a high proportion of biradicals to fulfill the frequency matching condition of CE (two EPR frequencies separated by the NMR frequency) using the strategies involving hetero-radical moieties and/or molecular alignment. In addition, the combination of an excited triplet and a stable radical might provide alternative DNP mechanisms without the microwave requirement.
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Affiliation(s)
- Kan-Nian Hu
- Laboratory of Chemical Physics, National Institute of Diabetes, Digestive and Kidney Diseases, National Institutes of Health, Bethesda, MD 20892, USA.
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37
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Jeschke G, Anger BC, Bode BE, Matysik J. Theory of Solid-State Photo-CIDNP in the Earth's Magnetic Field. J Phys Chem A 2011; 115:9919-28. [DOI: 10.1021/jp204921q] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Gunnar Jeschke
- Laboratory of Physical Chemistry, ETH Zürich, Zürich, Switzerland
| | - Ben C. Anger
- Leiden Institute of Chemistry, Leiden, The Netherlands
| | - Bela E. Bode
- Leiden Institute of Chemistry, Leiden, The Netherlands
| | - Jörg Matysik
- Leiden Institute of Chemistry, Leiden, The Netherlands
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Thamarath SS, Heberle J, Hore PJ, Kottke T, Matysik J. Solid-state photo-CIDNP effect observed in phototropin LOV1-C57S by (13)C magic-angle spinning NMR spectroscopy. J Am Chem Soc 2011; 132:15542-3. [PMID: 20958069 DOI: 10.1021/ja1082969] [Citation(s) in RCA: 44] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Until now, the solid-state photo-CIDNP effect, discovered in 1994 by Zysmilich and McDermott, has been observed selectively in photosynthetic systems. Here we present the first observation of this effect in a nonphotosynthetic system, the blue-light photoreceptor phototropin LOV1-C57S using (13)C magic-angle spinning (MAS) NMR.
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39
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Janssen GJ, Daviso E, van Son M, de Groot HJM, Alia A, Matysik J. Observation of the solid-state photo-CIDNP effect in entire cells of cyanobacteria Synechocystis. PHOTOSYNTHESIS RESEARCH 2010; 104:275-82. [PMID: 20094793 PMCID: PMC2882559 DOI: 10.1007/s11120-009-9508-1] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/09/2009] [Accepted: 11/25/2009] [Indexed: 05/18/2023]
Abstract
Cyanobacteria are widely used as model organism of oxygenic photosynthesis due to being the simplest photosynthetic organisms containing both photosystem I and II (PSI and PSII). Photochemically induced dynamic nuclear polarization (photo-CIDNP) (13)C magic-angle spinning (MAS) NMR is a powerful tool in understanding the photosynthesis machinery down to atomic level. Combined with selective isotope enrichment this technique has now opened the door to study primary charge separation in whole living cells. Here, we present the first photo-CIDNP observed in whole cells of the cyanobacterium Synechocystis.
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Affiliation(s)
- Geertje J. Janssen
- Leiden Institute of Chemistry, Leiden University, Einsteinweg 55, P.O. Box 9502, 2300 RA Leiden, The Netherlands
| | - Eugenio Daviso
- Leiden Institute of Chemistry, Leiden University, Einsteinweg 55, P.O. Box 9502, 2300 RA Leiden, The Netherlands
| | - Martin van Son
- Leiden Institute of Chemistry, Leiden University, Einsteinweg 55, P.O. Box 9502, 2300 RA Leiden, The Netherlands
| | - Huub J. M. de Groot
- Leiden Institute of Chemistry, Leiden University, Einsteinweg 55, P.O. Box 9502, 2300 RA Leiden, The Netherlands
| | - A. Alia
- Leiden Institute of Chemistry, Leiden University, Einsteinweg 55, P.O. Box 9502, 2300 RA Leiden, The Netherlands
| | - Jörg Matysik
- Leiden Institute of Chemistry, Leiden University, Einsteinweg 55, P.O. Box 9502, 2300 RA Leiden, The Netherlands
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Daviso E, Diller A, Gast P, Alia A, Lugtenburg J, Müller MG, Matysik J. Action Spectroscopy on Dense Samples of Photosynthetic Reaction Centers of Rhodobacter sphaeroides WT Based on Nanosecond Laser-Flash C Photo-CIDNP MAS NMR. APPLIED MAGNETIC RESONANCE 2010; 38:105-116. [PMID: 20208980 PMCID: PMC2826643 DOI: 10.1007/s00723-009-0103-6] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 09/02/2009] [Indexed: 05/28/2023]
Abstract
Photochemically induced dynamic nuclear polarization magic-angle spinning nuclear magnetic resonance (photo-CIDNP MAS NMR) allows for the investigation of the electronic structure of the photochemical machinery of photosynthetic reaction centers (RCs) at atomic resolution. For such experiments, either continuous radiation from white xenon lamps or green laser pulses are applied to optically dense samples. In order to explore their optical properties, optically thick samples of isolated and quinone-removed RCs of the purple bacteria of Rhodobacter sphaeroides wild type are studied by nanosecond laser-flash (13)C photo-CIDNP MAS NMR using excitation wavelengths between 720 and 940 nm. Action spectra of both the transient nuclear polarization as well as the nuclear hyperpolarization, remaining in the electronic ground state at the end of the photocycle, are obtained. It is shown that the signal intensity is limited by the amount of accessible RCs and that the different mechanisms of the photo-CIDNP production rely on the same photophysical origin, which is the photocycle induced by one single photon.
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Affiliation(s)
- Eugenio Daviso
- Institute of Chemistry, Leiden University, P.O. Box 9502, 2300 RA Leiden, The Netherlands
| | - Anna Diller
- Institute of Chemistry, Leiden University, P.O. Box 9502, 2300 RA Leiden, The Netherlands
| | - Peter Gast
- Institute of Physics, Leiden University, P.O. Box 9504, 2300 RA Leiden, The Netherlands
| | - A. Alia
- Institute of Chemistry, Leiden University, P.O. Box 9502, 2300 RA Leiden, The Netherlands
| | - Johan Lugtenburg
- Institute of Chemistry, Leiden University, P.O. Box 9502, 2300 RA Leiden, The Netherlands
| | - Marc G. Müller
- Max-Planck-Institut für Bioanorganische Chemie, Stiftstrasse 34-36, 45470 Mülheim an der Ruhr, Germany
| | - Jörg Matysik
- Institute of Chemistry, Leiden University, P.O. Box 9502, 2300 RA Leiden, The Netherlands
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41
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Daviso E, Prakash S, Alia A, Gast P, Neugebauer J, Jeschke G, Matysik J. The electronic structure of the primary electron donor of reaction centers of purple bacteria at atomic resolution as observed by photo-CIDNP 13C NMR. Proc Natl Acad Sci U S A 2009; 106:22281-6. [PMID: 20018724 PMCID: PMC2799707 DOI: 10.1073/pnas.0908608106] [Citation(s) in RCA: 66] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/30/2009] [Indexed: 11/18/2022] Open
Abstract
Composed of the two bacteriochlorophyll cofactors, P(L) and P(M), the special pair functions as the primary electron donor in bacterial reaction centers of purple bacteria of Rhodobacter sphaeroides. Under light absorption, an electron is transferred to a bacteriopheophytin and a radical pair is produced. The occurrence of the radical pair is linked to the production of enhanced nuclear polarization called photochemically induced dynamic nuclear polarization (photo-CIDNP). This effect can be used to study the electronic structure of the special pair at atomic resolution by detection of the strongly enhanced nuclear polarization with laser-flash photo-CIDNP magic-angle spinning NMR on the carotenoid-less mutant R26. In the electronic ground state, P(L) is strongly disturbed, carrying a slightly negative charge. In the radical cation state, the ratio of total electron spin densities between P(L) and P(M) is 2:1, although it is 2.5:1 for the pyrrole carbons, 2.2:1 for all porphyrinic carbons, and 4:1 for the pyrrole nitrogen. It is shown that the symmetry break between the electronic structures in the electronic ground state and in the radical cation state is an intrinsic property of the special pair supermolecule, which is particularly attributable to a modification of the structure of P(L). The significant difference in electron density distribution between the ground and radical cation states is explained by an electric polarization effect of the nearby histidine.
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Affiliation(s)
- Eugenio Daviso
- Leiden Institute of Chemistry, 2300 RA Leiden, The Netherlands
| | - Shipra Prakash
- Leiden Institute of Chemistry, 2300 RA Leiden, The Netherlands
| | - A. Alia
- Leiden Institute of Chemistry, 2300 RA Leiden, The Netherlands
| | - Peter Gast
- Leiden Institute of Physics, 2300 RA Leiden, The Netherlands; and
| | | | - Gunnar Jeschke
- Laboratorium für Physikalische Chemie, Eidgenössische Technische Hochschule Zürich, 8093 Zürich, Switzerland
| | - Jörg Matysik
- Leiden Institute of Chemistry, 2300 RA Leiden, The Netherlands
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Matysik J, Diller A, Roy E, Alia A. The solid-state photo-CIDNP effect. PHOTOSYNTHESIS RESEARCH 2009; 102:427-35. [PMID: 19238579 PMCID: PMC2777203 DOI: 10.1007/s11120-009-9403-9] [Citation(s) in RCA: 39] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/23/2008] [Accepted: 01/12/2009] [Indexed: 05/05/2023]
Abstract
The solid-state photo-CIDNP effect is the occurrence of a non-Boltzmann nuclear spin polarization in rigid samples upon illumination. For solid-state NMR, which can detect this enhanced nuclear polarization as a strong modification of signal intensity, the effect allows for new classes of experiments. Currently, the photo- and spin-chemical machinery of various RCs is studied by photo-CIDNP MAS NMR in detail. Until now, the effect has only been observed at high magnetic fields with (13)C and (15)N MAS NMR and in natural photosynthetic RC preparations in which blocking of the acceptor leads to cyclic electron transfer. In terms of irreversible thermodynamics, the high-order spin structure of the initial radical pair can be considered as a transient order phenomenon emerging under non-equilibrium conditions and as a first manifestation of order in the photosynthetic process. The solid-state photo- CIDNP effect appears to be an intrinsic property of natural RCs. The conditions of its occurrence seem to be conserved in evolution. The effect may be based on the same fundamental principles as the highly optimized electron transfer. Hence, the effect may allow for guiding artificial photosynthesis.
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Affiliation(s)
- Jörg Matysik
- Leiden Institute of Chemistry, Leiden University, Einsteinweg 55, P.O. Box 9502, 2300 RA Leiden, The Netherlands.
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Alia A, Ganapathy S, de Groot HJM. Magic Angle Spinning (MAS) NMR: a new tool to study the spatial and electronic structure of photosynthetic complexes. PHOTOSYNTHESIS RESEARCH 2009; 102:415-25. [PMID: 19669927 PMCID: PMC2777226 DOI: 10.1007/s11120-009-9478-3] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/31/2008] [Accepted: 07/13/2009] [Indexed: 05/08/2023]
Abstract
In the last two decades, Magic Angle Spinning (MAS) NMR has created its own niche in studies involving photosynthetic membrane protein complexes, owing to its ability to provide structural and functional information at atomic resolution of membrane proteins when in the membrane, in the natural environment. The light-harvesting two (LH2) transmembrane complex from Rhodopseudomonas acidophila is used to illustrate the procedure of the technique applicable in photosynthesis research. One- and two-dimensional solid-state NMR experiments involving (13)C- and (15)N-labeled LH2 complexes allow to make a sequence-specific assignment of NMR signals, which forms the basis for resolving structural details and the assessment of charge transfer, electronic delocalization effects, and functional strain in the ground state.
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Affiliation(s)
- A. Alia
- Leiden Institute of Chemistry, Gorlaeus Laboratories, P.O. Box 9502, 2300 RA Leiden, The Netherlands
| | - Swapna Ganapathy
- Leiden Institute of Chemistry, Gorlaeus Laboratories, P.O. Box 9502, 2300 RA Leiden, The Netherlands
| | - Huub J. M. de Groot
- Leiden Institute of Chemistry, Gorlaeus Laboratories, P.O. Box 9502, 2300 RA Leiden, The Netherlands
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44
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Roy E, Rohmer T, Gast P, Jeschke G, Alia A, Matysik J. Characterization of the Primary Radical Pair in Reaction Centers of Heliobacillus mobilis by 13C Photo-CIDNP MAS NMR. Biochemistry 2008; 47:4629-35. [DOI: 10.1021/bi800030g] [Citation(s) in RCA: 30] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Esha Roy
- Leiden Institute of Chemistry, P.O. Box 9502, 2300 RA Leiden, The Netherlands, Leiden Institute of Physics, P.O. box 9504, 2300 RA Leiden, The Netherlands, and Physikalische Chemie, Universität Konstanz, 78457 Konstanz, Germany
| | - Thierry Rohmer
- Leiden Institute of Chemistry, P.O. Box 9502, 2300 RA Leiden, The Netherlands, Leiden Institute of Physics, P.O. box 9504, 2300 RA Leiden, The Netherlands, and Physikalische Chemie, Universität Konstanz, 78457 Konstanz, Germany
| | - Peter Gast
- Leiden Institute of Chemistry, P.O. Box 9502, 2300 RA Leiden, The Netherlands, Leiden Institute of Physics, P.O. box 9504, 2300 RA Leiden, The Netherlands, and Physikalische Chemie, Universität Konstanz, 78457 Konstanz, Germany
| | - Gunnar Jeschke
- Leiden Institute of Chemistry, P.O. Box 9502, 2300 RA Leiden, The Netherlands, Leiden Institute of Physics, P.O. box 9504, 2300 RA Leiden, The Netherlands, and Physikalische Chemie, Universität Konstanz, 78457 Konstanz, Germany
| | - A. Alia
- Leiden Institute of Chemistry, P.O. Box 9502, 2300 RA Leiden, The Netherlands, Leiden Institute of Physics, P.O. box 9504, 2300 RA Leiden, The Netherlands, and Physikalische Chemie, Universität Konstanz, 78457 Konstanz, Germany
| | - Jörg Matysik
- Leiden Institute of Chemistry, P.O. Box 9502, 2300 RA Leiden, The Netherlands, Leiden Institute of Physics, P.O. box 9504, 2300 RA Leiden, The Netherlands, and Physikalische Chemie, Universität Konstanz, 78457 Konstanz, Germany
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45
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Daviso E, Diller A, Alia A, Matysik J, Jeschke G. Photo-CIDNP MAS NMR beyond the T1 limit by fast cycles of polarization extinction and polarization generation. JOURNAL OF MAGNETIC RESONANCE (SAN DIEGO, CALIF. : 1997) 2008; 190:43-51. [PMID: 17967555 DOI: 10.1016/j.jmr.2007.10.001] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/17/2007] [Revised: 10/01/2007] [Accepted: 10/04/2007] [Indexed: 05/06/2023]
Abstract
In nanosecond-laser flash photo-CIDNP MAS NMR, polarization generation (PG) proceeds much faster than longitudinal spin relaxation. With a nanosecond-laser setup linked to the NMR console the repetition time of the experiment is then limited by the minimum recycle delay of the NMR spectrometer and the maximum repetition rate of laser flashes. These limits can only be reached if polarization left after the NMR experiment is completely canceled before the next laser flash. We introduce a presaturation pulse sequence, based on three (pi/2) (13)C pulses and optimized timing and phase cycling that allows for such efficient polarization extinction (PE). The technique is demonstrated on selectively isotope labeled bacterial reaction centers (RCs) of Rhodobacter (Rb.) sphaeroides wildtype (WT). High-quality (13)C photo-CIDNP MAS NMR spectra are obtained using cycle rates up to 4 Hz. The PE-PG strategy proposed here provides a general experimental scheme for reduction of measurement time in magnetic resonance experiments based on fast PG.
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Affiliation(s)
- Eugenio Daviso
- Leiden Institute of Chemistry, Einsteinweg 55, P.O. Box 9502, 2300 RA Leiden, The Netherlands
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46
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Daviso E, Jeschke G, Matysik J. Photochemically Induced Dynamic Nuclear Polarization (Photo-CIDNP) Magic-Angle Spinning NMR. BIOPHYSICAL TECHNIQUES IN PHOTOSYNTHESIS 2008. [DOI: 10.1007/978-1-4020-8250-4_19] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
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47
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Bajaj VS, Hornstein MK, Kreischer KE, Sirigiri JR, Woskov PP, Mak-Jurkauskas ML, Herzfeld J, Temkin RJ, Griffin RG. 250GHz CW gyrotron oscillator for dynamic nuclear polarization in biological solid state NMR. JOURNAL OF MAGNETIC RESONANCE (SAN DIEGO, CALIF. : 1997) 2007; 189:251-79. [PMID: 17942352 PMCID: PMC2695453 DOI: 10.1016/j.jmr.2007.09.013] [Citation(s) in RCA: 52] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/01/2007] [Revised: 09/03/2007] [Accepted: 09/13/2007] [Indexed: 05/05/2023]
Abstract
In this paper, we describe a 250 GHz gyrotron oscillator, a critical component of an integrated system for magic angle spinning (MAS) dynamic nuclear polarization (DNP) experiments at 9T, corresponding to 380 MHz (1)H frequency. The 250 GHz gyrotron is the first gyro-device designed with the goal of seamless integration with an NMR spectrometer for routine DNP enhanced NMR spectroscopy and has operated under computer control for periods of up to 21 days with a 100% duty cycle. Following a brief historical review of the field, we present studies of the membrane protein bacteriorhodopsin (bR) using DNP enhanced multidimensional NMR. These results include assignment of active site resonances in [U-(13)C, (15)N]-bR and demonstrate the utility of DNP for studies of membrane proteins. Next, we review the theory of gyro-devices from quantum mechanical and classical viewpoints and discuss the unique considerations that apply to gyrotron oscillators designed for DNP experiments. We then characterize the operation of the 250 GHz gyrotron in detail, including its long-term stability and controllability. We have measured the spectral purity of the gyrotron emission using both homodyne and heterodyne techniques. Radiation intensity patterns from the corrugated waveguide that delivers power to the NMR probe were measured using two new techniques to confirm pure mode content: a thermometric approach based on the temperature-dependent color of liquid crystalline media applied to a substrate and imaging with a pyroelectric camera. We next present a detailed study of the mode excitation characteristics of the gyrotron. Exploration of the operating characteristics of several fundamental modes reveals broadband continuous frequency tuning of up to 1.8 GHz as a function of the magnetic field alone, a feature that may be exploited in future tunable gyrotron designs. Oscillation of the 250 GHz gyrotron at the second harmonic of cyclotron resonance begins at extremely low beam currents (as low 12 mA) at frequencies between 320 and 365 GHz, suggesting an efficient route for the generation of even higher frequency radiation. The low starting currents were attributed to an elevated cavity Q, which is confirmed by cavity thermal load measurements. We conclude with an appendix containing a detailed description of the control system that safely automates all aspects of the gyrotron operation.
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Affiliation(s)
- Vikram S. Bajaj
- Department of Chemistry and Francis Bitter Magnet Laboratory, Massachusetts Institute of Technology, Cambridge, MA, 02139
| | - Melissa K. Hornstein
- Plasma Science and Fusion Center, Massachusetts Institute of Technology, Cambridge, MA 02139 USA
| | - Kenneth E. Kreischer
- Plasma Science and Fusion Center, Massachusetts Institute of Technology, Cambridge, MA 02139 USA
| | - Jagadishwar R. Sirigiri
- Plasma Science and Fusion Center, Massachusetts Institute of Technology, Cambridge, MA 02139 USA
| | - Paul P. Woskov
- Plasma Science and Fusion Center, Massachusetts Institute of Technology, Cambridge, MA 02139 USA
| | | | - Judith Herzfeld
- Department of Chemistry, Brandeis University, Waltham, MA, 02454
| | - Richard J. Temkin
- Plasma Science and Fusion Center, Massachusetts Institute of Technology, Cambridge, MA 02139 USA
| | - Robert G. Griffin
- Department of Chemistry and Francis Bitter Magnet Laboratory, Massachusetts Institute of Technology, Cambridge, MA, 02139
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Diller A, Roy E, Gast P, van Gorkom HJ, de Groot HJM, Glaubitz C, Jeschke G, Matysik J, Alia A. 15N photochemically induced dynamic nuclear polarization magic-angle spinning NMR analysis of the electron donor of photosystem II. Proc Natl Acad Sci U S A 2007; 104:12767-71. [PMID: 17652174 PMCID: PMC1937541 DOI: 10.1073/pnas.0701763104] [Citation(s) in RCA: 57] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
In natural photosynthesis, the two photosystems that operate in series to drive electron transport from water to carbon dioxide are quite similar in structure and function, but operate at widely different potentials. In both systems photochemistry begins by photo-oxidation of a chlorophyll a, but that in photosystem II (PS2) has a 0.7 eV higher midpoint potential than that in photosystem I (PS1), so their electronic structures must be very different. Using reaction centers from (15)N-labeled spinach, these electronic structures are compared by their photochemically induced dynamic nuclear polarization (photo-CIDNP) in magic-angle spinning (MAS) NMR measurements. The results show that the electron spin distribution in PS1, apart from its known delocalization over 2 chlorophyll molecules, reveals no marked disturbance, whereas the pattern of electron spin density distribution in PS2 is inverted in the oxidized radical state. A model for the donor of PS2 is presented explaining the inversion of electron spin density based on a tilt of the axial histidine toward pyrrole ring IV causing pi-pi overlap of both aromatic systems.
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Affiliation(s)
- Anna Diller
- *Gorlaeus Laboratoria, Leiden Institute of Chemistry, Einsteinweg 55, P.O. Box 9502, 2300 RA Leiden, The Netherlands
| | - Esha Roy
- *Gorlaeus Laboratoria, Leiden Institute of Chemistry, Einsteinweg 55, P.O. Box 9502, 2300 RA Leiden, The Netherlands
| | - Peter Gast
- Huygens Laboratorium, Leiden Institute of Physics, Niels Bohrweg 2, P.O. Box 9504, 2300 RA Leiden, The Netherlands
| | - Hans J. van Gorkom
- Huygens Laboratorium, Leiden Institute of Physics, Niels Bohrweg 2, P.O. Box 9504, 2300 RA Leiden, The Netherlands
| | - Huub J. M. de Groot
- *Gorlaeus Laboratoria, Leiden Institute of Chemistry, Einsteinweg 55, P.O. Box 9502, 2300 RA Leiden, The Netherlands
| | - Clemens Glaubitz
- Institute of Biophysical Chemistry, Johann Wolfgang Goethe Universität, Max-von-Laue-Strasse 9, 60438 Frankfurt/Main, Germany; and
| | - Gunnar Jeschke
- Department of Chemistry, Universität Konstanz, Universitätsstrasse 10, 78457 Konstanz, Germany
| | - Jörg Matysik
- *Gorlaeus Laboratoria, Leiden Institute of Chemistry, Einsteinweg 55, P.O. Box 9502, 2300 RA Leiden, The Netherlands
- To whom correspondence should be addressed. E-mail:
| | - A. Alia
- *Gorlaeus Laboratoria, Leiden Institute of Chemistry, Einsteinweg 55, P.O. Box 9502, 2300 RA Leiden, The Netherlands
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Roy E, Gast P, van Gorkom H, de Groot HJM, Jeschke G, Matysik J. Photochemically induced dynamic nuclear polarization in the reaction center of the green sulphur bacterium Chlorobium tepidum observed by 13C MAS NMR. BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS 2007; 1767:610-5. [PMID: 17292850 DOI: 10.1016/j.bbabio.2006.12.012] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/22/2006] [Revised: 12/21/2006] [Accepted: 12/29/2006] [Indexed: 11/30/2022]
Abstract
Photochemically induced dynamic nuclear polarization has been observed in reaction centres of the green sulphur bacterium Chlorobium tepidum by (13)C magic-angle spinning solid-state NMR under continuous illumination with white light. An almost complete set of chemical shifts of the aromatic ring carbons of a BChl a molecule has been obtained. All light-induced (13)C NMR signals appear to be emissive, which is similar to the pattern observed in the reaction centers of plant photosystem I and purple bacterial reaction centres of Rhodobacter sphaeroides wild type. The donor in RCs of green sulfur bacteria clearly differs from the substantially asymmetric special pair of purple bacteria and appears to be similar to the more symmetric donor of photosystem I.
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Affiliation(s)
- Esha Roy
- Leiden Institute of Chemistry, Gorlaeus Laboratoria, 2300 RA Leiden, The Netherlands
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