1
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Jamagne R, Power MJ, Zhang ZH, Zango G, Gibber B, Leigh DA. Active template synthesis. Chem Soc Rev 2024; 53:10216-10252. [PMID: 39235620 PMCID: PMC11376342 DOI: 10.1039/d4cs00430b] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/03/2024] [Indexed: 09/06/2024]
Abstract
The active template synthesis of mechanically interlocked molecular architectures exploits the dual ability of various structural elements (metals or, in the case of metal-free active template synthesis, particular arrangements of functional groups) to serve as both a template for the organisation of building blocks and as a catalyst to facilitate the formation of covalent bonds between them. This enables the entwined or threaded intermediate structure to be covalently captured under kinetic control. Unlike classical passive template synthesis, the intercomponent interactions transiently used to promote the assembly typically do not 'live on' in the interlocked product, meaning that active template synthesis can be traceless and used for constructing mechanically interlocked molecules that do not feature strong binding interactions between the components. Since its introduction in 2006, active template synthesis has been used to prepare a variety of rotaxanes, catenanes and knots. Amongst the metal-ion-mediated versions of the strategy, the copper(I)-catalysed alkyne-azide cycloaddition (CuAAC) remains the most extensively used transformation, although a broad range of other catalytic reactions and transition metals also provide effective manifolds. In metal-free active template synthesis, the recent discovery of the acceleration of the reaction of primary amines with electrophiles through the cavity of crown ethers has proved effective for forming an array of rotaxanes without recognition elements, including compact rotaxane superbases, dissipatively assembled rotaxanes and molecular pumps. This Review details the active template concept, outlines its advantages and limitations for the synthesis of interlocked molecules, and charts the diverse set of reactions that have been used with this strategy to date. The application of active template synthesis in various domains is discussed, including molecular machinery, mechanical chirality, catalysis, molecular recognition and various aspects of materials science.
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Affiliation(s)
- Romain Jamagne
- Department of Chemistry, University of Manchester, Oxford Road, Manchester M13 9PL, UK.
| | - Martin J Power
- Department of Chemistry, University of Manchester, Oxford Road, Manchester M13 9PL, UK.
| | - Zhi-Hui Zhang
- School of Chemistry and Molecular Engineering, East China Normal University, Shanghai 200062, P. R. China
| | - Germán Zango
- Department of Chemistry, University of Manchester, Oxford Road, Manchester M13 9PL, UK.
| | - Benjamin Gibber
- Department of Chemistry, University of Manchester, Oxford Road, Manchester M13 9PL, UK.
| | - David A Leigh
- Department of Chemistry, University of Manchester, Oxford Road, Manchester M13 9PL, UK.
- School of Chemistry and Molecular Engineering, East China Normal University, Shanghai 200062, P. R. China
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2
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Saura-Sanmartin A. Synthesis of 'Impossible' Rotaxanes. Chemistry 2024; 30:e202304025. [PMID: 38168751 DOI: 10.1002/chem.202304025] [Citation(s) in RCA: 6] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/02/2023] [Revised: 12/31/2023] [Accepted: 01/03/2024] [Indexed: 01/05/2024]
Abstract
'Impossible' rotaxanes, which are constituted by interlocked components without obvious binding motifs, have attracted the interest of the mechanically interlocked molecules (MIMs) community. Within the synthetic efforts reported in the last decades towards the preparation of MIMs, some innovative protocols for accessing 'impossible' rotaxanes have been developed. This short review highlights different selected synthetic examples of 'impossible' rotaxanes, as well as suggests some future directions of this research area.
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Affiliation(s)
- Adrian Saura-Sanmartin
- Departamento de Química Orgánica, Facultad de Química, Universidad de Murcia, Campus de Espinardo, 30100, Murcia, Spain
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3
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Ohta M, Okuda A, Hosoya S, Yoshigoe Y, Saito S. Synthesis of Interlocked and Non-Interlocked Deca(para-phenylene) Derivatives by Ni-mediated Biaryl Coupling. Chemistry 2024; 30:e202304309. [PMID: 38199956 DOI: 10.1002/chem.202304309] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/22/2023] [Revised: 01/09/2024] [Accepted: 01/10/2024] [Indexed: 01/12/2024]
Abstract
Oligo(para-phenylene) (PPn) is a compound composed of directly connected 1,4-phenylene moieties. The synthesis of PPn composed of six or more phenylene moieties with no substituent at the internal phenylene moiety has been challenging because of its low solubility. Herein we synthesized oligo(para-phenylene)[2]rotaxanes, including a deca(para-phenylene)[2]rotaxane, with a defined number of phenylene moieties. Biaryl coupling of iodoarenes mediated by macrocyclic dibenzodihydrophenanthroline-Ni complex was utilized for the first time to synthesize the [2]rotaxanes. Compared to the non-interlocked deca(para-phenylene), the deca(para-phenylene)[2]rotaxane showed higher solubility. The properties of the oligo(para-phenylene)[2]rotaxanes and non-interlocked oligo(para-phenylene)s were analyzed by spectroscopic methods.
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Affiliation(s)
- Misuzu Ohta
- Department of Chemistry, Tokyo University of Science, 1-3, Kagurazaka, Shinjuku, Tokyo, Japan
| | - Ayano Okuda
- Department of Chemistry, Tokyo University of Science, 1-3, Kagurazaka, Shinjuku, Tokyo, Japan
| | - Shoichi Hosoya
- Research Center for Medical and Dental Sciences, Tokyo Medical and Dental University, 1-5-45, Yushima, Bunkyo-ku, Tokyo, Japan
| | - Yusuke Yoshigoe
- Department of Chemistry, Tokyo University of Science, 1-3, Kagurazaka, Shinjuku, Tokyo, Japan
| | - Shinichi Saito
- Department of Chemistry, Tokyo University of Science, 1-3, Kagurazaka, Shinjuku, Tokyo, Japan
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4
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Tsai CY, Cheng HT, Chiu SH. Improbable Rotaxanes Constructed From Surrogate Malonate Rotaxanes as Encircled Methylene Synthons. Angew Chem Int Ed Engl 2023; 62:e202308974. [PMID: 37712453 DOI: 10.1002/anie.202308974] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/26/2023] [Revised: 09/12/2023] [Accepted: 09/14/2023] [Indexed: 09/16/2023]
Abstract
We have developed a new approach for the synthesis of "improbable" rotaxanes by using malonate-centered rotaxanes as interlocked surrogate precursors. Here, the desired dumbbell-shaped structure can be assembled from two different, completely separate, portions, with the only residual structure introduced from the malonate surrogate being a methylene group. We have synthesized improbable [2]- and [3]rotaxanes with all-hydrocarbon dumbbell-shaped components to demonstrate the potential structural flexibility and scope of the guest species that can be interlocked when using this approach.
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Affiliation(s)
- Chi-You Tsai
- Department of Chemistry and Center for Emerging Material and Advanced Devices, National Taiwan University, No. 1, Sec. 4, Roosevelt Road, Taipei, Taiwan
| | - Hung-Te Cheng
- Department of Chemistry and Center for Emerging Material and Advanced Devices, National Taiwan University, No. 1, Sec. 4, Roosevelt Road, Taipei, Taiwan
| | - Sheng-Hsien Chiu
- Department of Chemistry and Center for Emerging Material and Advanced Devices, National Taiwan University, No. 1, Sec. 4, Roosevelt Road, Taipei, Taiwan
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5
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Fu F, Liu D, Zhao L, Li H, Bai X, Chen M, Jiang Z, Su P, Zhong W, Li Y, Liao W, He J, Wang P. Substituents make a difference: 6,6″-modified terpyridine complexes with helix configuration and enhanced emission. Dalton Trans 2023; 52:3033-3039. [PMID: 36779408 DOI: 10.1039/d2dt04006a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/01/2023]
Abstract
A series of complexes L22-M (L2: 6,6″-bis(4-methoxyphenyl)-4'-phenyl-2,2':6',2″-terpyridine, M: Mn2+, Fe2+, Co2+, Ni2+, Cu2+, Zn2+) were synthesized by coordinating p-methoxyphenyl 6,6″-substituted terpyridine ligand with first-row transition metal ions and characterized by NMR, ESI-MS, and X-ray single crystal diffraction techniques. Single-crystal structures demonstrated that the steric hindrance of p-methoxyphenyl substituents endowed complexes L22-M with obvious longer coordination bond lengths and larger bond angles and dihedral angles compared with unmodified L12-M (L1: 4'-phenyl-2,2':6',2″-terpyridine). The chiral helix geometry was observed for L22-M, in which 2,2':6',2″-terpyridine moiety dramatically twisted to a spiral form in comparison to the nearly coplanar structure of the parent L12-M, resulting in plentiful intramolecular and intermolecular π-π interactions. Also, the appealing racemic (P and M) double helix packed structure for 6,6″-modified bisterpyridine complex L22-Cu was formed in the crystal. The consequent appealing charge transfer (CT) emission for L22-Zn in the solution and solid were investigated via UV-vis and fluorescence spectroscopy techniques and time-dependent density functional theory (TD-DFT) calculations. This work afforded a new method to achieve intriguing chiral geometry and CT optical properties via the subtle design and modification of terpyridine ligands.
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Affiliation(s)
- Fan Fu
- School of Chemical Engineering and Light Industry, Guangdong University of Technology, Guangzhou 510006, China
| | - Die Liu
- College of Chemistry and Chemical Engineering, Central South University, Changsha, Hunan-410083, China
| | - Lili Zhao
- Institute of Environmental Research at Greater Bay Area, Guangzhou University, Guangdong-510006, China
| | - Huili Li
- Institute of Environmental Research at Greater Bay Area, Guangzhou University, Guangdong-510006, China
| | - Xinyu Bai
- Institute of Environmental Research at Greater Bay Area, Guangzhou University, Guangdong-510006, China
| | - Mingzhao Chen
- Institute of Environmental Research at Greater Bay Area, Guangzhou University, Guangdong-510006, China
| | - Zhilong Jiang
- Institute of Environmental Research at Greater Bay Area, Guangzhou University, Guangdong-510006, China
| | - Peiyang Su
- Institute of Environmental Research at Greater Bay Area, Guangzhou University, Guangdong-510006, China
| | - Wanying Zhong
- Institute of Environmental Research at Greater Bay Area, Guangzhou University, Guangdong-510006, China
| | - Yiming Li
- College of Chemistry and Chemical Engineering, Central South University, Changsha, Hunan-410083, China
| | - Weiming Liao
- School of Chemical Engineering and Light Industry, Guangdong University of Technology, Guangzhou 510006, China
| | - Jun He
- School of Chemical Engineering and Light Industry, Guangdong University of Technology, Guangzhou 510006, China
| | - Pingshan Wang
- College of Chemistry and Chemical Engineering, Central South University, Changsha, Hunan-410083, China
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6
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Hertzog JE, Maddi VJ, Hart LF, Rawe BW, Rauscher PM, Herbert KM, Bruckner EP, de Pablo JJ, Rowan SJ. Metastable doubly threaded [3]rotaxanes with a large macrocycle. Chem Sci 2022; 13:5333-5344. [PMID: 35655545 PMCID: PMC9093191 DOI: 10.1039/d2sc01486f] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/13/2022] [Accepted: 04/13/2022] [Indexed: 11/21/2022] Open
Abstract
Ring size is a critically important parameter in many interlocked molecules as it directly impacts many of the unique molecular motions that they exhibit. Reported herein are studies using one of the largest macrocycles reported to date to synthesize doubly threaded [3]rotaxanes. A large ditopic 46 atom macrocycle containing two 2,6-bis(N-alkyl-benzimidazolyl)pyridine ligands has been used to synthesize several metastable doubly threaded [3]rotaxanes in high yield (65-75% isolated) via metal templating. Macrocycle and linear thread components were synthesized and self-assembled upon addition of iron(ii) ions to form the doubly threaded pseudo[3]rotaxanes that could be subsequently stoppered using azide-alkyne cycloaddition chemistry. Following demetallation with base, these doubly threaded [3]rotaxanes were fully characterized utilizing a variety of NMR spectroscopy, mass spectrometry, size-exclusion chromatography, and all-atom simulation techniques. Critical to the success of accessing a metastable [3]rotaxane with such a large macrocycle was the nature of the stopper group employed. By varying the size of the stopper group it was possible to access metastable [3]rotaxanes with stabilities in deuterated chloroform ranging from a half-life of <1 minute to ca. 6 months at room temperature potentially opening the door to interlocked materials with controllable degradation rates.
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Affiliation(s)
- Jerald E Hertzog
- Department of Chemistry, University of Chicago Chicago IL 60637 USA
| | - Vincent J Maddi
- Department of Chemistry, University of Chicago Chicago IL 60637 USA
| | - Laura F Hart
- Pritzker School of Molecular Engineering, University of Chicago Chicago IL 60637 USA
| | - Benjamin W Rawe
- Pritzker School of Molecular Engineering, University of Chicago Chicago IL 60637 USA
| | - Phillip M Rauscher
- Pritzker School of Molecular Engineering, University of Chicago Chicago IL 60637 USA
| | - Katie M Herbert
- Pritzker School of Molecular Engineering, University of Chicago Chicago IL 60637 USA
- Department of Macromolecular Science and Engineering, Case Western Reserve University 2100 Adelbert Road Cleveland OH 44106 USA
| | - Eric P Bruckner
- Department of Macromolecular Science and Engineering, Case Western Reserve University 2100 Adelbert Road Cleveland OH 44106 USA
| | - Juan J de Pablo
- Pritzker School of Molecular Engineering, University of Chicago Chicago IL 60637 USA
- Chemical Science and Engineering Division and Center for Molecular Engineering, Argonne National Laboratory 9700 S. Cass Ave., Lemont IL 60434 USA
| | - Stuart J Rowan
- Department of Chemistry, University of Chicago Chicago IL 60637 USA
- Pritzker School of Molecular Engineering, University of Chicago Chicago IL 60637 USA
- Department of Macromolecular Science and Engineering, Case Western Reserve University 2100 Adelbert Road Cleveland OH 44106 USA
- Chemical Science and Engineering Division and Center for Molecular Engineering, Argonne National Laboratory 9700 S. Cass Ave., Lemont IL 60434 USA
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7
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Remarkably flexible 2,2′:6′,2″-terpyridines and their group 8–10 transition metal complexes – Chemistry and applications. Coord Chem Rev 2022. [DOI: 10.1016/j.ccr.2022.214426] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
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8
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Au-Yeung HY, Deng Y. Distinctive features and challenges in catenane chemistry. Chem Sci 2022; 13:3315-3334. [PMID: 35432874 PMCID: PMC8943846 DOI: 10.1039/d1sc05391d] [Citation(s) in RCA: 22] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/30/2021] [Accepted: 02/04/2022] [Indexed: 11/21/2022] Open
Abstract
From being an aesthetic molecular object to a building block for the construction of molecular machines, catenanes and related mechanically interlocked molecules (MIMs) continue to attract immense interest in many research areas. Catenane chemistry is closely tied to that of rotaxanes and knots, and involves concepts like mechanical bonds, chemical topology and co-conformation that are unique to these molecules. Yet, because of their different topological structures and mechanical bond properties, there are some fundamental differences between the chemistry of catenanes and that of rotaxanes and knots although the boundary is sometimes blurred. Clearly distinguishing these differences, in aspects of bonding, structure, synthesis and properties, between catenanes and other MIMs is therefore of fundamental importance to understand their chemistry and explore the new opportunities from mechanical bonds.
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Affiliation(s)
- Ho Yu Au-Yeung
- Department of Chemistry, The University of Hong Kong Pokfulam Road Hong Kong P. R. China
- State Key Laboratory of Synthetic Chemistry, The University of Hong Kong Pokfulam Road Hong Kong P. R. China
| | - Yulin Deng
- Department of Chemistry, The University of Hong Kong Pokfulam Road Hong Kong P. R. China
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9
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Hooper CAJ, Cardo L, Craig JS, Melidis L, Garai A, Egan RT, Sadovnikova V, Burkert F, Male L, Hodges NJ, Browning DF, Rosas R, Liu F, Rocha FV, Lima MA, Liu S, Bardelang D, Hannon MJ. Rotaxanating Metallo-supramolecular Nano-cylinder Helicates to Switch DNA Junction Binding. J Am Chem Soc 2020; 142:20651-20660. [DOI: 10.1021/jacs.0c07750] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]
Affiliation(s)
- Catherine A. J. Hooper
- School of Chemistry, University of Birmingham, Edgbaston, Birmingham B15 2TT, United Kingdom
| | - Lucia Cardo
- School of Chemistry, University of Birmingham, Edgbaston, Birmingham B15 2TT, United Kingdom
| | - James S. Craig
- Physical Sciences for Health Centre, University of Birmingham, Edgbaston, Birmingham B15 2TT, United Kingdom
| | - Lazaros Melidis
- Physical Sciences for Health Centre, University of Birmingham, Edgbaston, Birmingham B15 2TT, United Kingdom
| | - Aditya Garai
- School of Chemistry, University of Birmingham, Edgbaston, Birmingham B15 2TT, United Kingdom
| | - Ross T. Egan
- School of Chemistry, University of Birmingham, Edgbaston, Birmingham B15 2TT, United Kingdom
| | - Viktoriia Sadovnikova
- School of Chemistry, University of Birmingham, Edgbaston, Birmingham B15 2TT, United Kingdom
| | - Florian Burkert
- School of Chemistry, University of Birmingham, Edgbaston, Birmingham B15 2TT, United Kingdom
| | - Louise Male
- School of Chemistry, University of Birmingham, Edgbaston, Birmingham B15 2TT, United Kingdom
| | - Nikolas J. Hodges
- School of Biosciences, University of Birmingham, Edgbaston, Birmingham B15 2TT, United Kingdom
| | - Douglas F. Browning
- School of Biosciences, University of Birmingham, Edgbaston, Birmingham B15 2TT, United Kingdom
| | - Roselyne Rosas
- Aix Marseille Univ, CNRS, Centrale Marseille, FSCM, Spectropole, Marseille 13007, France
| | - Fengbo Liu
- The State Key Laboratory of Refractories and Metallurgy, School of Chemistry and Chemical Engineering, Wuhan University of Science and Technology, Wuhan 430081, P. R. China
| | - Fillipe V. Rocha
- Department of Chemistry, Federal University of São Carlos, São Carlos 13565-905, Brazil
| | - Mauro A. Lima
- Department of Chemistry, Federal University of São Carlos, São Carlos 13565-905, Brazil
| | - Simin Liu
- The State Key Laboratory of Refractories and Metallurgy, School of Chemistry and Chemical Engineering, Wuhan University of Science and Technology, Wuhan 430081, P. R. China
| | | | - Michael J. Hannon
- School of Chemistry, University of Birmingham, Edgbaston, Birmingham B15 2TT, United Kingdom
- Physical Sciences for Health Centre, University of Birmingham, Edgbaston, Birmingham B15 2TT, United Kingdom
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10
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Yamamoto K, Nameki R, Sogawa H, Takata T. Macrocyclic Dinuclear Palladium Complex as a Novel Doubly Threaded [3]Rotaxane Scaffold and Its Application as a Rotaxane Cross‐Linker. Angew Chem Int Ed Engl 2020. [DOI: 10.1002/ange.202007866] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Affiliation(s)
- Koji Yamamoto
- Department of Chemical Science and Engineering Tokyo Institute of Technology 4259 Nagatsuta-cho, Midori-ku Yokohama 226-8503 Japan
- Present address: Division of Molecular Science, Faculty of Science and Technology Gunma University 1-5-1 Tenjin-cho Kiryu, Gunma 376-8515 Japan
| | - Riku Nameki
- Department of Chemical Science and Engineering Tokyo Institute of Technology 4259 Nagatsuta-cho, Midori-ku Yokohama 226-8503 Japan
| | - Hiromitsu Sogawa
- Department of Chemical Science and Engineering Tokyo Institute of Technology 4259 Nagatsuta-cho, Midori-ku Yokohama 226-8503 Japan
- Present address: Department of Chemistry and Materials Engineering, Faculty of Chemistry, Materials, and Bioengineering Kansai University 3-3-35 Yamate-cho Suita, Osaka 564-8680 Japan
| | - Toshikazu Takata
- Department of Chemical Science and Engineering Tokyo Institute of Technology 4259 Nagatsuta-cho, Midori-ku Yokohama 226-8503 Japan
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11
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Yamamoto K, Nameki R, Sogawa H, Takata T. Macrocyclic Dinuclear Palladium Complex as a Novel Doubly Threaded [3]Rotaxane Scaffold and Its Application as a Rotaxane Cross-Linker. Angew Chem Int Ed Engl 2020; 59:18023-18028. [PMID: 32578285 DOI: 10.1002/anie.202007866] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/02/2020] [Indexed: 11/08/2022]
Abstract
A dinuclear PdII complex possessing a cyclic ligand was developed as a novel doubly threaded [3]rotaxane scaffold and applied as a rotaxane cross-linker reagent. The dinuclear complex (PdMC)2 was prepared by one-step macrocyclization followed by the double palladation reaction. 1 H NMR analysis and UV/Vis measurements revealed the formation of a doubly threaded pseudo[3]rotaxane by the complexation of (PdMC)2 with 2 equivalents of 2,6-disubstituted pyridine 3 through double metal coordination. The treatment of (PdMC)2 with 2 equivalents of 4-vinylpyridine (VP) afforded a doubly threaded [3]rotaxane cross-linker (PdMC-VP)2 . Radical co-polymerization of VP and t-butylstyrene in the presence of (PdMC-VP)2 afforded a stable rotaxane cross-linked polymer (RCP). An elastic RCP was also prepared by using n-butyl acrylate as a monomer. The obtained RCPs exhibited higher swelling ability and higher mechanical toughness compared with the corresponding covalent cross-linked polymers.
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Affiliation(s)
- Koji Yamamoto
- Department of Chemical Science and Engineering, Tokyo Institute of Technology, 4259 Nagatsuta-cho, Midori-ku, Yokohama, 226-8503, Japan.,Present address: Division of Molecular Science, Faculty of Science and Technology, Gunma University, 1-5-1 Tenjin-cho, Kiryu, Gunma, 376-8515, Japan
| | - Riku Nameki
- Department of Chemical Science and Engineering, Tokyo Institute of Technology, 4259 Nagatsuta-cho, Midori-ku, Yokohama, 226-8503, Japan
| | - Hiromitsu Sogawa
- Department of Chemical Science and Engineering, Tokyo Institute of Technology, 4259 Nagatsuta-cho, Midori-ku, Yokohama, 226-8503, Japan.,Present address: Department of Chemistry and Materials Engineering, Faculty of Chemistry, Materials, and Bioengineering, Kansai University, 3-3-35 Yamate-cho, Suita, Osaka, 564-8680, Japan
| | - Toshikazu Takata
- Department of Chemical Science and Engineering, Tokyo Institute of Technology, 4259 Nagatsuta-cho, Midori-ku, Yokohama, 226-8503, Japan
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12
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Alcântara AFP, Fontana LA, Almeida MP, Rigolin VH, Ribeiro MA, Barros WP, Megiatto JD. Control over the Redox Cooperative Mechanism of Radical Carbene Transfer Reactions for the Efficient Active‐Metal‐Template Synthesis of [2]Rotaxanes. Chemistry 2020; 26:7808-7822. [DOI: 10.1002/chem.201905602] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/11/2019] [Indexed: 02/01/2023]
Affiliation(s)
- Arthur F. P. Alcântara
- Institute of ChemistryUniversity of Campinas (UNICAMP) PO Box 6154 13083-970 Campinas Brazil
- Instituto Federal do Sertão Pernambucano Estrada do Tamboril 56200-000 Ouricuri Brazil
| | - Liniquer A. Fontana
- Institute of ChemistryUniversity of Campinas (UNICAMP) PO Box 6154 13083-970 Campinas Brazil
| | - Marlon P. Almeida
- Institute of ChemistryUniversity of Campinas (UNICAMP) PO Box 6154 13083-970 Campinas Brazil
| | - Vitor H. Rigolin
- Institute of ChemistryUniversity of Campinas (UNICAMP) PO Box 6154 13083-970 Campinas Brazil
| | - Marcos A. Ribeiro
- Departamento de QuímicaUniversidade Federal do Espírito Santo Av. Fernando Ferrari, 514 29075-910 Vitória Brazil
| | - Wdeson P. Barros
- Institute of ChemistryUniversity of Campinas (UNICAMP) PO Box 6154 13083-970 Campinas Brazil
| | - Jackson D. Megiatto
- Institute of ChemistryUniversity of Campinas (UNICAMP) PO Box 6154 13083-970 Campinas Brazil
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13
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Ye Z, Wang J, Kothapalli SSK, Yang Z, Chen L, Xu W, Cai Y, Zhang T, Xiao X, Deng P, Feng W, Yuan L. Controlling the selective synthesis of [2]- and [3]rotaxanes by intermolecular steric hindrance between the macrocyclic hosts. Chem Commun (Camb) 2019; 56:1066-1069. [PMID: 31872194 DOI: 10.1039/c9cc08253k] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Abstract
Two hydrogen-bonded azo-macrocycles with little disparity of the side chains in steric hindrance exhibited a substantial difference in complexation (slow/fast exchange) towards bipyridinium. Inspired by this finding, these macrocycles were applied to efficiently and selectively construct [2]- and [3]rotaxanes through one-pot synthesis. The origin of the selectivity in this novel approach was elucidated by comparing single crystal structures, DFT calculations and stepwise synthesis.
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Affiliation(s)
- Zecong Ye
- College of Chemistry, Key Laboratory for Radiation Physics and Technology of Ministry of Education, Analytical & Testing Center, Sichuan University, Chengdu 610064, Sichuan, China.
| | - Jian Wang
- College of Chemistry, Key Laboratory for Radiation Physics and Technology of Ministry of Education, Analytical & Testing Center, Sichuan University, Chengdu 610064, Sichuan, China.
| | - Sudarshana Santhosh Kumar Kothapalli
- College of Chemistry, Key Laboratory for Radiation Physics and Technology of Ministry of Education, Analytical & Testing Center, Sichuan University, Chengdu 610064, Sichuan, China.
| | - Zhiyao Yang
- College of Chemistry, Key Laboratory for Radiation Physics and Technology of Ministry of Education, Analytical & Testing Center, Sichuan University, Chengdu 610064, Sichuan, China.
| | - Lixi Chen
- College of Chemistry, Key Laboratory for Radiation Physics and Technology of Ministry of Education, Analytical & Testing Center, Sichuan University, Chengdu 610064, Sichuan, China.
| | - Weitao Xu
- Key Laboratory of Macrocyclic and Supramolecular Chemistry of Guizhou Province, Guizhou University, Guiyang 550025, China
| | - Yimin Cai
- College of Chemistry, Key Laboratory for Radiation Physics and Technology of Ministry of Education, Analytical & Testing Center, Sichuan University, Chengdu 610064, Sichuan, China.
| | - Tinghui Zhang
- College of Chemistry, Key Laboratory for Radiation Physics and Technology of Ministry of Education, Analytical & Testing Center, Sichuan University, Chengdu 610064, Sichuan, China.
| | - Xin Xiao
- Key Laboratory of Macrocyclic and Supramolecular Chemistry of Guizhou Province, Guizhou University, Guiyang 550025, China
| | - Pengchi Deng
- College of Chemistry, Key Laboratory for Radiation Physics and Technology of Ministry of Education, Analytical & Testing Center, Sichuan University, Chengdu 610064, Sichuan, China.
| | - Wen Feng
- College of Chemistry, Key Laboratory for Radiation Physics and Technology of Ministry of Education, Analytical & Testing Center, Sichuan University, Chengdu 610064, Sichuan, China.
| | - Lihua Yuan
- College of Chemistry, Key Laboratory for Radiation Physics and Technology of Ministry of Education, Analytical & Testing Center, Sichuan University, Chengdu 610064, Sichuan, China.
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14
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Abstract
The design and synthesis of artificial molecular switches (AMSs) displaying architectures of increased complexity would constitute significant progress in meeting the challenging task of realizing artificial molecular machines (AMMs). Here, we report the synthesis and characterization of a molecular shuttle composed of a cyclobis(paraquat-4,4'-biphenylene) cyclophane ring and a dumbbell incorporating a cyclobis(paraquat-m-phenylene) cyclophane "head" and a bifurcated, tawse-like "tail" composed of two oligoether chains, each containing a 1,5-dioxynaphthalene ring. In its reduced state the ring-in-ring recognition motif, between the meta and para bisradical dicationic cyclophanes (rings), defines the [2]rotaxane, whereas in the oxidized state, the cyclobis(paraquat-4,4'-biphenylene) cyclophane encircles the two 1,5-dioxynaphthalene rings in the bifurcated "tail". The redox-controlled molecular shuttling, which can be likened to the action of a zipper in the macroscopic world, exhibits slow kinetics dampened by the opening and closing of the bifurcated "tail" of the molecular shuttle. Cyclic voltammetry reveals that this slow shuttling is associated with electrochemical hysteresis.
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Affiliation(s)
- Melissa Dumartin
- Department of Chemistry , Northwestern University , 2145 Sheridan Road , Evanston , Illinois 60208 , United States
| | - Mark C Lipke
- Department of Chemistry and Chemical Biology , Rutgers, The State University of New Jersey , 610 Taylor Road , Piscataway , New Jersey 08854 , United States
| | - J Fraser Stoddart
- Department of Chemistry , Northwestern University , 2145 Sheridan Road , Evanston , Illinois 60208 , United States.,Institute of Molecular Design and Synthesis , Tianjin University , 92 Weijin Road, Nankai District , Tianjin 300072 , P. R. China.,School of Chemistry , University of New South Wales , Sydney , NSW 2052 , Australia
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15
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Echavarren J, Gall MAY, Haertsch A, Leigh DA, Marcos V, Tetlow DJ. Active template rotaxane synthesis through the Ni-catalyzed cross-coupling of alkylzinc reagents with redox-active esters. Chem Sci 2019; 10:7269-7273. [PMID: 31588296 PMCID: PMC6686731 DOI: 10.1039/c9sc02457c] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/18/2019] [Accepted: 06/15/2019] [Indexed: 12/24/2022] Open
Abstract
The synthesis of unsymmetrical axle [2]rotaxanes through a recently developed Ni-catalyzed C(sp3)-C(sp3) cross-coupling of redox-active esters (formed directly from carboxylic acids) and organozinc reagents (derived from alkyl bromides) is reported. The method also furnishes, as a minor product, the symmetrical axle [2]rotaxanes resulting from the homo-coupling of the organozinc half-thread. The rotaxanes are formed in up to 56% yield with the ratio of unsymmetrical rotaxane increasing with the cavity size of the macrocycle. In the absence of the redox-active ester neither rotaxane is formed, even though the homo-coupling rotaxane product does not incorporate the redox-active ester building block. A Ni(iii) intermediate is consistent with these observations, providing support for the previously postulated mechanism of the Ni-catalyzed cross-coupling reaction.
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Affiliation(s)
- Javier Echavarren
- School of Chemistry , University of Manchester , Oxford Road , Manchester , M13 9PL , UK .
| | - Malcolm A Y Gall
- School of Chemistry , University of Manchester , Oxford Road , Manchester , M13 9PL , UK .
| | - Adrian Haertsch
- School of Chemistry , University of Manchester , Oxford Road , Manchester , M13 9PL , UK .
| | - David A Leigh
- School of Chemistry , University of Manchester , Oxford Road , Manchester , M13 9PL , UK .
| | - Vanesa Marcos
- School of Chemistry , University of Manchester , Oxford Road , Manchester , M13 9PL , UK .
| | - Daniel J Tetlow
- School of Chemistry , University of Manchester , Oxford Road , Manchester , M13 9PL , UK .
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16
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Ayme JF, Beves JE, Campbell CJ, Leigh DA. Probing the Dynamics of the Imine-Based Pentafoil Knot and Pentameric Circular Helicate Assembly. J Am Chem Soc 2019; 141:3605-3612. [PMID: 30707020 PMCID: PMC6429429 DOI: 10.1021/jacs.8b12800] [Citation(s) in RCA: 23] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/08/2023]
Abstract
![]()
We investigate the self-assembly
dynamics of an imine-based pentafoil
knot and related pentameric circular helicates, each derived from
a common bis(formylpyridine)bipyridyl building block, iron(II) chloride,
and either monoamines or a diamine. The mixing of circular helicates
derived from different amines led to the complete exchange of the N-alkyl residues on the periphery of the metallo-supramolecular
scaffolds over 4 days in DMSO at 60 °C. Under similar conditions,
deuterium-labeled and nonlabeled building blocks showed full dialdehyde
building block exchange over 13 days for open circular helicates but
was much slower for the analogous closed-loop pentafoil knot (>60
days). Although both knots and open circular helicates self-assemble
under thermodynamic control given sufficiently long reaction times,
this is significantly longer than the time taken to afford the maximum
product yield (2 days). Highly effective error correction occurs during
the synthesis of imine-based pentafoil molecular knots and pentameric
circular helicates despite, in practice, the systems not operating
under full thermodynamic control.
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Affiliation(s)
- Jean-François Ayme
- School of Chemistry , University of Manchester , Oxford Road , Manchester M13 9PL , United Kingdom.,School of Chemistry , University of Edinburgh , The King's Buildings, West Mains Road , Edinburgh EH9 3JJ , United Kingdom
| | - Jonathon E Beves
- School of Chemistry , University of Edinburgh , The King's Buildings, West Mains Road , Edinburgh EH9 3JJ , United Kingdom
| | - Christopher J Campbell
- School of Chemistry , University of Edinburgh , The King's Buildings, West Mains Road , Edinburgh EH9 3JJ , United Kingdom
| | - David A Leigh
- School of Chemistry , University of Manchester , Oxford Road , Manchester M13 9PL , United Kingdom.,School of Chemistry , University of Edinburgh , The King's Buildings, West Mains Road , Edinburgh EH9 3JJ , United Kingdom
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17
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Riss-Yaw B, Clavel C, Laurent P, Waelès P, Coutrot F. The Importance of Length and Flexibility of Macrocycle-Containing Molecular Translocators for the Synthesis of Improbable [2]Rotaxanes. Chemistry 2018; 24:13659-13666. [PMID: 29969523 DOI: 10.1002/chem.201802831] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/01/2018] [Revised: 07/02/2018] [Indexed: 12/20/2022]
Abstract
This work reports on the use of molecular translocators to capture a dibenzo-24-crown-8 (DB24C8) and then release it onto targeted molecular axles to afford, after removal of the translocator, [2]rotaxanes that do not hold any template site. Various translocators were studied and successfully aided the synthesis, with more or less efficacy, of [2]rotaxanes of different lengths. During the releasing step, the DB24C8 macrocycle shuttles along the thread, and the localization of the macrocycle might be driven by steric repulsion on the translocator part and/or electronic attraction of the targeted part of the axle to be encircled, which depends on both the nature of the translocator and the targeted thread to be encircled.
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Affiliation(s)
- Benjamin Riss-Yaw
- Supramolecular Machines and Architectures Team, Institut des Biomolécules Max Mousseron (IBMM) UMR 5247 CNRS, Université de Montpellier, ENSCM, case courrier 1706, Bâtiment Chimie (17), 3ème étage, Faculté des Sciences, Place Eugène Bataillon, 34095, Montpellier cedex 5, France
| | - Caroline Clavel
- Supramolecular Machines and Architectures Team, Institut des Biomolécules Max Mousseron (IBMM) UMR 5247 CNRS, Université de Montpellier, ENSCM, case courrier 1706, Bâtiment Chimie (17), 3ème étage, Faculté des Sciences, Place Eugène Bataillon, 34095, Montpellier cedex 5, France
| | - Philippe Laurent
- Supramolecular Machines and Architectures Team, Institut des Biomolécules Max Mousseron (IBMM) UMR 5247 CNRS, Université de Montpellier, ENSCM, case courrier 1706, Bâtiment Chimie (17), 3ème étage, Faculté des Sciences, Place Eugène Bataillon, 34095, Montpellier cedex 5, France
| | - Philip Waelès
- Supramolecular Machines and Architectures Team, Institut des Biomolécules Max Mousseron (IBMM) UMR 5247 CNRS, Université de Montpellier, ENSCM, case courrier 1706, Bâtiment Chimie (17), 3ème étage, Faculté des Sciences, Place Eugène Bataillon, 34095, Montpellier cedex 5, France
| | - Frédéric Coutrot
- Supramolecular Machines and Architectures Team, Institut des Biomolécules Max Mousseron (IBMM) UMR 5247 CNRS, Université de Montpellier, ENSCM, case courrier 1706, Bâtiment Chimie (17), 3ème étage, Faculté des Sciences, Place Eugène Bataillon, 34095, Montpellier cedex 5, France
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18
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Jamieson EMG, Modicom F, Goldup SM. Chirality in rotaxanes and catenanes. Chem Soc Rev 2018; 47:5266-5311. [PMID: 29796501 PMCID: PMC6049620 DOI: 10.1039/c8cs00097b] [Citation(s) in RCA: 196] [Impact Index Per Article: 28.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/01/2018] [Indexed: 12/20/2022]
Abstract
Although chiral mechanically interlocked molecules (MIMs) have been synthesised and studied, enantiopure examples are relatively under-represented in the pantheon of reported catenanes and rotaxanes and the underlying chirality of the system is often even overlooked. This is changing with the advent of new applications of MIMs in catalysis, sensing and materials and the appearance of new methods to access unusual stereogenic units unique to the mechanical bond. Here we discuss the different stereogenic units that have been investigated in catenanes and rotaxanes, examples of their application, methods for assigning absolute stereochemistry and provide a perspective on future developments.
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Affiliation(s)
- E. M. G. Jamieson
- Chemistry
, University of Southampton
,
University Road, Highfield
, Southampton
, SO17 1BJ
, UK
.
| | - F. Modicom
- Chemistry
, University of Southampton
,
University Road, Highfield
, Southampton
, SO17 1BJ
, UK
.
| | - S. M. Goldup
- Chemistry
, University of Southampton
,
University Road, Highfield
, Southampton
, SO17 1BJ
, UK
.
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19
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Lewis JEM, Beer PD, Loeb SJ, Goldup SM. Metal ions in the synthesis of interlocked molecules and materials. Chem Soc Rev 2018; 46:2577-2591. [PMID: 28447678 DOI: 10.1039/c7cs00199a] [Citation(s) in RCA: 166] [Impact Index Per Article: 23.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Abstract
The use of metal ions to template the synthesis of catenanes by Sauvage and co-workers was a pivotal moment in the development of the field of interlocked molecules. In this Review Article we shall examine the different roles metal-ligand interactions play in modern syntheses of interlocked molecules and materials, with a particular focus on seminal contributions and the advantages and disadvantages of employing metal ligand interactions.
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Affiliation(s)
- James E M Lewis
- Chemistry, University of Southampton, University Road, Southampton, SO17 1BJ, UK.
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20
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21
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Fujino T, Naitoh H, Miyagawa S, Kimura M, Kawasaki T, Yoshida K, Inoue H, Takagawa H, Tokunaga Y. Formation of [2]- and [3]Rotaxanes through Bridging under Kinetic and Thermodynamic Control. Org Lett 2018; 20:369-372. [PMID: 29283267 DOI: 10.1021/acs.orglett.7b03615] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
An efficient synthesis of a doubly stranded [3]rotaxane has been developed through bridging of a pseudo[3]rotaxane featuring two axle components. Reversible azine formation was effective as the bridging reaction. Kinetic and thermodynamic conditions provided the [2]- and [3]rotaxanes, respectively.
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Affiliation(s)
- Takaaki Fujino
- Department of Materials Science and Engineering, Faculty of Engineering, University of Fukui , Bunkyo, Fukui 910-8507, Japan
| | - Hirotake Naitoh
- Department of Materials Science and Engineering, Faculty of Engineering, University of Fukui , Bunkyo, Fukui 910-8507, Japan
| | - Shinobu Miyagawa
- Department of Materials Science and Engineering, Faculty of Engineering, University of Fukui , Bunkyo, Fukui 910-8507, Japan
| | - Masaki Kimura
- Department of Materials Science and Engineering, Faculty of Engineering, University of Fukui , Bunkyo, Fukui 910-8507, Japan
| | - Tsuneomi Kawasaki
- Department of Applied Chemistry, Tokyo University of Science , Kagurazaka, Shinjuku-ku, Tokyo 162-8601, Japan
| | - Kazuyuki Yoshida
- Forensic Science Laboratory, Fukui Prefectural Police Headquarters , Ohte, Fukui 910-8515, Japan
| | - Hajime Inoue
- Forensic Science Laboratory, Fukui Prefectural Police Headquarters , Ohte, Fukui 910-8515, Japan
| | - Hiroaki Takagawa
- Forensic Science Laboratory, Fukui Prefectural Police Headquarters , Ohte, Fukui 910-8515, Japan
| | - Yuji Tokunaga
- Department of Materials Science and Engineering, Faculty of Engineering, University of Fukui , Bunkyo, Fukui 910-8507, Japan
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22
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23
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Yamazaki Y, Mutoh Y, Saito S. Synthesis of Interlocked Compounds by Utilizing Bond-forming Reactions Mediated by Macrocyclic Phenanthroline-Cu Complexes. CHEM LETT 2017. [DOI: 10.1246/cl.170031] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
Affiliation(s)
- Yukari Yamazaki
- Department of Chemistry, Faculty of Science, Tokyo University of Science, Kagurazaka, Shinjuku, Tokyo 162-8601
| | - Yuichiro Mutoh
- Department of Chemistry, Faculty of Science, Tokyo University of Science, Kagurazaka, Shinjuku, Tokyo 162-8601
| | - Shinichi Saito
- Department of Chemistry, Faculty of Science, Tokyo University of Science, Kagurazaka, Shinjuku, Tokyo 162-8601
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24
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Santra S, Ghosh P. Rotamer-Induced Dynamic Nature of a [2]Rotaxane and Control of the Dynamics by External Stimuli. European J Org Chem 2017. [DOI: 10.1002/ejoc.201601525] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Affiliation(s)
- Saikat Santra
- Department of Inorganic Chemistry; Indian Association for the Cultivation of Science; 2A and 2B Raja S.C. Mullick Road Kolkata India
| | - Pradyut Ghosh
- Department of Inorganic Chemistry; Indian Association for the Cultivation of Science; 2A and 2B Raja S.C. Mullick Road Kolkata India
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25
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Lewis JEM, Winn J, Goldup SM. Stepwise, Protecting Group Free Synthesis of [4]Rotaxanes. Molecules 2017; 22:E89. [PMID: 28075366 PMCID: PMC6155830 DOI: 10.3390/molecules22010089] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/21/2016] [Revised: 12/22/2016] [Accepted: 12/25/2016] [Indexed: 11/16/2022] Open
Abstract
Despite significant advances in the last three decades towards high yielding syntheses of rotaxanes, the preparation of systems constructed from more than two components remains a challenge. Herein we build upon our previous report of an active template copper-catalyzed azide-alkyne cycloaddition (CuAAC) rotaxane synthesis with a diyne in which, following the formation of the first mechanical bond, the steric bulk of the macrocycle tempers the reactivity of the second alkyne unit. We have now extended this approach to the use of 1,3,5-triethynylbenzene in order to successively prepare [2]-, [3]- and [4]rotaxanes without the need for protecting group chemistry. Whilst the first two iterations proceeded in good yield, the steric shielding that affords this selectivity also significantly reduces the efficacy of the active template (AT)-CuAAC reaction of the third alkyne towards the preparation of [4]rotaxanes, resulting in severely diminished yields.
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Affiliation(s)
- James E M Lewis
- Chemistry, University of Southampton, Highfield, Southampton SO17 1BJ, UK.
| | - Joby Winn
- School of Biological and Chemical Sciences, Queen Mary University of London, Mile End Road, London E1 4NS, UK.
| | - Stephen M Goldup
- Chemistry, University of Southampton, Highfield, Southampton SO17 1BJ, UK.
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26
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Abstract
We identify new entangled motifs in proteins that we call complex lassos. Lassos arise in proteins with disulfide bridges (or in proteins with amide linkages), when termini of a protein backbone pierce through an auxiliary surface of minimal area, spanned on a covalent loop. We find that as much as 18% of all proteins with disulfide bridges in a non-redundant subset of PDB form complex lassos, and classify them into six distinct geometric classes, one of which resembles supercoiling known from DNA. Based on biological classification of proteins we find that lassos are much more common in viruses, plants and fungi than in other kingdoms of life. We also discuss how changes in the oxidation/reduction potential may affect the function of proteins with lassos. Lassos and associated surfaces of minimal area provide new, interesting and possessing many potential applications geometric characteristics not only of proteins, but also of other biomolecules.
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27
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Lewis JEM, Winn J, Cera L, Goldup SM. Iterative Synthesis of Oligo[n]rotaxanes in Excellent Yield. J Am Chem Soc 2016; 138:16329-16336. [PMID: 27700073 DOI: 10.1021/jacs.6b08958] [Citation(s) in RCA: 84] [Impact Index Per Article: 9.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
Abstract
We present an operationally simple iterative coupling strategy for the synthesis of oligomeric homo- and hetero[n]rotaxanes with precise control over the position of each macrocycle. The exceptional yield of the AT-CuAAC reaction, combined with optimized conditions that allow the rapid synthesis of the target oligomers, opens the door to the study of precision-engineered oligomeric interlocked molecules.
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Affiliation(s)
- James E M Lewis
- Chemistry, University of Southampton , Highfield, Southampton SO17 1BJ, U.K
| | - Joby Winn
- School of Biological Sciences, Queen Mary University of London , London E1 4NS, U.K
| | - Luca Cera
- School of Biological Sciences, Queen Mary University of London , London E1 4NS, U.K
| | - Stephen M Goldup
- Chemistry, University of Southampton , Highfield, Southampton SO17 1BJ, U.K
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28
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Abstract
[4]Rotaxanes featuring three axles threaded through a single ring have been prepared through active metal template synthesis. Nickel-catalyzed sp(3)-sp(3) homocouplings of alkyl bromide "half-threads" through 37- and 38-membered 2,2':6',2″-terpyridyl macrocycles generate triply threaded [4]rotaxanes in up to 11% yield. An analogous 39-membered macrocycle produced no rotaxane products under similar conditions. The constitutions of the [4]rotaxanes were determined by NMR spectroscopy and mass spectrometry. Doubly threaded [3]rotaxanes were also obtained from the reactions but no [2]rotaxanes were isolated, suggesting that upon demetalation the axle of a singly threaded rotaxane can slip through a macrocycle that is sufficiently large to accommodate three threads.
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Affiliation(s)
- Jonathan J Danon
- School of Chemistry, University of Manchester , Oxford Road, Manchester M13 9PL, United Kingdom
| | - David A Leigh
- School of Chemistry, University of Manchester , Oxford Road, Manchester M13 9PL, United Kingdom.,School of Chemistry, University of Edinburgh , The King's Buildings, West Mains Road, Edinburgh EH9 3JJ, United Kingdom
| | - Paul R McGonigal
- School of Chemistry, University of Edinburgh , The King's Buildings, West Mains Road, Edinburgh EH9 3JJ, United Kingdom
| | - John W Ward
- School of Chemistry, University of Manchester , Oxford Road, Manchester M13 9PL, United Kingdom
| | - Jhenyi Wu
- School of Chemistry, University of Edinburgh , The King's Buildings, West Mains Road, Edinburgh EH9 3JJ, United Kingdom
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29
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Yamada Y, Kato T, Tanaka K. Assembly of Multi-Phthalocyanines on a Porphyrin Template by Fourfold Rotaxane Formation. Chemistry 2016; 22:12371-80. [PMID: 27417388 DOI: 10.1002/chem.201601768] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/14/2016] [Indexed: 12/24/2022]
Abstract
A stacked assembly composed of a porphyrin and two phthalocyanines was prepared through fourfold rotaxane formation. Two phthalocyanine molecules, bearing four 24-crown-8 units, were assembled onto a porphyrin template incorporating four sidechains with two dialkylammonium ions each through pseudorotaxane formation between crown ether units and ammonium ions. The Staudinger phosphite reaction, as the stoppering reaction, resulted in the formation of the stacked heterotrimer composed of a porphyrin and two phthalocyanines connected through a fourfold rotaxane structure. UV/Vis spectroscopic and electrochemical studies of the heterotrimer indicated that there is a significant electronic interaction between the two phthalocyanine units due to the close stacking. The electrochemical oxidation process of the stacked heterotrimer was studied by cyclic voltammetry and spectroelectrochemistry. Electron paramagnetic resonance (EPR) spectroscopy of a dinuclear Cu(II) complex, in which two Cu(II) phthalocyanines were assembled on a metal-free porphyrin template, revealed that two Cu(II) phthalocyanines were located within the stacking distance, which resulted in an antiferromagnetic interaction between the two S=1/2 spins in the ground state of the Cu(2+) ions in the heterotrimer.
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Affiliation(s)
- Yasuyuki Yamada
- Department of Chemistry, Faculty of Science, Nagoya University, Furo-cho, Chikusa-ku, Naogya, 464-8602, Japan.,Research Center for Materials Science, Nagoya University, Furo-cho, Chikusa-ku, Naogya, 464-8602, Japan
| | - Tatsuhisa Kato
- Department of Interdisciplinary Environment, Graduate School of Human and Environmental Studies, Kyoto University, Yoshidanihonmatsu-cho, Sakyo-ku, Kyoto, 606-8501, Japan
| | - Kentaro Tanaka
- Department of Chemistry, Faculty of Science, Nagoya University, Furo-cho, Chikusa-ku, Naogya, 464-8602, Japan.
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30
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Movsisyan LD, Franz M, Hampel F, Thompson AL, Tykwinski RR, Anderson HL. Polyyne Rotaxanes: Stabilization by Encapsulation. J Am Chem Soc 2016; 138:1366-76. [PMID: 26752712 PMCID: PMC4772075 DOI: 10.1021/jacs.5b12049] [Citation(s) in RCA: 101] [Impact Index Per Article: 11.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
Abstract
![]()
Active metal template Glaser coupling
has been used to synthesize
a series of rotaxanes consisting of a polyyne, with up to 24 contiguous sp-hybridized carbon atoms, threaded through a variety of
macrocycles. Cadiot–Chodkiewicz cross-coupling affords higher
yields of rotaxanes than homocoupling. This methodology has been used
to prepare [3]rotaxanes with two polyyne chains locked through the
same macrocycle. The crystal structure of one of these [3]rotaxanes
shows that there is extremely close contact between the central carbon
atoms of the threaded hexayne chains (C···C distance
3.29 Å vs 3.4 Å for the sum of van der Waals radii) and
that the bond-length-alternation is perturbed in the vicinity of this
contact. However, despite the close interaction between the hexayne
chains, the [3]rotaxane is remarkably stable under ambient conditions,
probably because the two polyynes adopt a crossed geometry. In the
solid state, the angle between the two polyyne chains is 74°,
and this crossed geometry appears to be dictated by the bulk of the
“supertrityl” end groups. Several rotaxanes have been
synthesized to explore gem-dibromoethene moieties as “masked”
polyynes. However, the reductive Fritsch–Buttenberg–Wiechell
rearrangement to form the desired polyyne rotaxanes has not yet been
achieved. X-ray crystallographic analysis on six [2]rotaxanes and
two [3]rotaxanes provides insight into the noncovalent interactions
in these systems. Differential scanning calorimetry (DSC) reveals
that the longer polyyne rotaxanes (C16, C18, and C24) decompose at
higher temperatures than the corresponding unthreaded polyyne axles.
The stability enhancement increases as the polyyne becomes longer,
reaching 60 °C in the C24 rotaxane.
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Affiliation(s)
- Levon D Movsisyan
- Department of Chemistry, University of Oxford, Chemistry Research Laboratory , Oxford, OX1 3TA, United Kingdom
| | - Michael Franz
- Department of Chemistry & Pharmacy, and Interdisciplinary Center of Molecular Materials (ICMM), University of Erlangen-Nuremberg (FAU) , Henkestrasse 42, 91054 Erlangen, Germany
| | - Frank Hampel
- Department of Chemistry & Pharmacy, and Interdisciplinary Center of Molecular Materials (ICMM), University of Erlangen-Nuremberg (FAU) , Henkestrasse 42, 91054 Erlangen, Germany
| | - Amber L Thompson
- Department of Chemistry, University of Oxford, Chemistry Research Laboratory , Oxford, OX1 3TA, United Kingdom
| | - Rik R Tykwinski
- Department of Chemistry & Pharmacy, and Interdisciplinary Center of Molecular Materials (ICMM), University of Erlangen-Nuremberg (FAU) , Henkestrasse 42, 91054 Erlangen, Germany
| | - Harry L Anderson
- Department of Chemistry, University of Oxford, Chemistry Research Laboratory , Oxford, OX1 3TA, United Kingdom
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31
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Hayashi R, Slavík P, Mutoh Y, Kasama T, Saito S. Sequence-Selective Synthesis of Rotacatenane Isomers. J Org Chem 2016; 81:1175-84. [DOI: 10.1021/acs.joc.5b02697] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/22/2023]
Affiliation(s)
- Ryuto Hayashi
- Department
of Chemistry, Faculty of Science, Tokyo University of Science, 1-3 Kagurazaka, Shinjuku, Tokyo, 162-8601, Japan
| | - Petr Slavík
- Department
of Chemistry, Faculty of Science, Tokyo University of Science, 1-3 Kagurazaka, Shinjuku, Tokyo, 162-8601, Japan
| | - Yuichiro Mutoh
- Department
of Chemistry, Faculty of Science, Tokyo University of Science, 1-3 Kagurazaka, Shinjuku, Tokyo, 162-8601, Japan
| | - Takeshi Kasama
- Research
Center for Medical and Dental Sciences, Tokyo Medical and Dental University, 1-5-45 Yushima, Bunkyo, Tokyo, 113-8510, Japan
| | - Shinichi Saito
- Department
of Chemistry, Faculty of Science, Tokyo University of Science, 1-3 Kagurazaka, Shinjuku, Tokyo, 162-8601, Japan
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32
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Hardy EE, Eddy MA, Maynard BA, Gorden AEV. Solid state π–π stacking and higher order dimensional crystal packing, reactivity, and electrochemical behaviour of salphenazine actinide and transition metal complexes. Dalton Trans 2016; 45:14243-51. [DOI: 10.1039/c6dt02389d] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
Abstract
Here, we describe and compare the synthesis, solution characterization, and solid-state behaviour of the salphenazine ligand and metal complexes.
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Affiliation(s)
- E. E. Hardy
- Department of Chemistry and Biochemistry
- Auburn University
- Auburn
- USA
| | - M. A. Eddy
- Department of Chemistry and Biochemistry
- Auburn University
- Auburn
- USA
| | - B. A. Maynard
- Department of Chemistry and Biochemistry
- Auburn University
- Auburn
- USA
| | - A. E. V. Gorden
- Department of Chemistry and Biochemistry
- Auburn University
- Auburn
- USA
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33
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Zou HH, Wang L, Long ZX, Qin QP, Song ZK, Xie T, Zhang SH, Liu YC, Lin B, Chen ZF. Preparation of 4-([2,2':6',2″-terpyridin]-4'-yl)-N,N-diethylaniline Ni(II) and Pt(II) complexes and exploration of their in vitro cytotoxic activities. Eur J Med Chem 2015; 108:1-12. [PMID: 26619388 DOI: 10.1016/j.ejmech.2015.11.005] [Citation(s) in RCA: 45] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/12/2015] [Revised: 10/20/2015] [Accepted: 11/03/2015] [Indexed: 11/17/2022]
Abstract
Two metal complexes of NiLCl2 (1) and [PtLCl]Cl (2) with 4-([2,2':6',2″-terpyridin]-4'-yl)-N,N-diethylaniline (L) were synthesized and characterized. 1 and 2 exhibited selective cytotoxicity to T-24 cells more than L, compared with the normal liver cell line (HL-7702). Various experiments showed that L, 1 and 2 caused T-24 cell cycle arrest at S phase, as shown by the down-regulation of cdc25 A, cyclin A, cyclin B and CDK2 and the up-regulation of p21, p27 and p53. Furthermore, complexes 1 and 2, especially complex 2, acted as telomerase inhibitors targeting c-myc G-quadruplex DNA and triggered cell apoptosis. In addition, 1 and 2 also caused mitochondrial dysfunction. Taken together, we found that 1 and 2 exerted their cytotoxic activity mainly via inhibiting telomerase by interaction with c-myc quadruplex and disruption of mitochondrial function.
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Affiliation(s)
- Hua-Hong Zou
- State Key Laboratory Cultivation Base for The Chemistry and Molecular Engineering of Medicinal Resources, School of Chemistry and Pharmacy, Guangxi Normal University, 15 Yucai Road, Guilin 541004, PR China.
| | - Li Wang
- State Key Laboratory Cultivation Base for The Chemistry and Molecular Engineering of Medicinal Resources, School of Chemistry and Pharmacy, Guangxi Normal University, 15 Yucai Road, Guilin 541004, PR China
| | - Zhi-Xiang Long
- Guangxi Zhuang Autonomous Region Center for Analysis and Test Research, 32 Xinghu Road, Nanning 530022, PR China
| | - Qi-Pin Qin
- State Key Laboratory Cultivation Base for The Chemistry and Molecular Engineering of Medicinal Resources, School of Chemistry and Pharmacy, Guangxi Normal University, 15 Yucai Road, Guilin 541004, PR China
| | - Zhong-Kui Song
- Guangxi Zhuang Autonomous Region Center for Analysis and Test Research, 32 Xinghu Road, Nanning 530022, PR China
| | - Tao Xie
- Guangxi Zhuang Autonomous Region Center for Analysis and Test Research, 32 Xinghu Road, Nanning 530022, PR China
| | - Shu-Hua Zhang
- Guangxi Key Laboratory of Electrochemical and Magnetochemical Functional Materials, College of Chemistry and Bioengineering, Guilin University of Technology, Guilin 541004, PR China
| | - Yan-Cheng Liu
- State Key Laboratory Cultivation Base for The Chemistry and Molecular Engineering of Medicinal Resources, School of Chemistry and Pharmacy, Guangxi Normal University, 15 Yucai Road, Guilin 541004, PR China
| | - Bin Lin
- Nanning City No. 2 People's Hospital, 13 Dancun Road, Nanning 530031, PR China
| | - Zhen-Feng Chen
- State Key Laboratory Cultivation Base for The Chemistry and Molecular Engineering of Medicinal Resources, School of Chemistry and Pharmacy, Guangxi Normal University, 15 Yucai Road, Guilin 541004, PR China
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34
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Affiliation(s)
- Sundus Erbas-Cakmak
- School of Chemistry, University of Manchester, Oxford Road, Manchester M13 9PL, United Kingdom
| | - David A. Leigh
- School of Chemistry, University of Manchester, Oxford Road, Manchester M13 9PL, United Kingdom
| | - Charlie T. McTernan
- School of Chemistry, University of Manchester, Oxford Road, Manchester M13 9PL, United Kingdom
| | - Alina
L. Nussbaumer
- School of Chemistry, University of Manchester, Oxford Road, Manchester M13 9PL, United Kingdom
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35
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Ju H, Clegg JK, Park KM, Lindoy LF, Lee SS. Formation of a Dicopper Platform Based Polyrotaxane Whose "String" and "Bead" Are Constructed from the Same Components. J Am Chem Soc 2015; 137:9535-8. [PMID: 26185900 DOI: 10.1021/jacs.5b05770] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/23/2023]
Abstract
The combination of the dicopper platform [Cu2(L)2(THF)2] (1·2THF), where H2L is 1,1'-(1,3-phenylene)-bis-4,4-dimethylpentane-1,3-dione, and 1,4-bis(4-pyridyl)piperazine (bpp), afforded the first example of a one-dimensional polyrotaxane {[(1)(μ2-bpp)][(1)2(bpp)2]}n whose "string" and "bead" are constructed from the same components. The bead of stoichiometry [(1)2(bpp)2] has a large rectangular cavity of dimensions 7.40 × 15.64 Å and is threaded onto a stair-like string of composition [(1)(μ2-bpp)]n. The formation of the polyrotaxane is driven by π-π stacking between the string and the beads with precise electronic and steric complementarity between these components. A pathway for the formation of the polyrotaxane is proposed.
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Affiliation(s)
- Huiyeong Ju
- †Department of Chemistry and Research Institute of Natural Science, Gyeongsang National University, Jinju 660-701, S. Korea
| | - Jack K Clegg
- ‡School of Chemistry and Molecular Biosciences, The University of Queensland, St Lucia, QLD 4072, Australia
| | - Ki-Min Park
- †Department of Chemistry and Research Institute of Natural Science, Gyeongsang National University, Jinju 660-701, S. Korea
| | - Leonard F Lindoy
- †Department of Chemistry and Research Institute of Natural Science, Gyeongsang National University, Jinju 660-701, S. Korea.,§School of Chemistry, The University of Sydney, Sydney, NSW 2006, Australia
| | - Shim Sung Lee
- †Department of Chemistry and Research Institute of Natural Science, Gyeongsang National University, Jinju 660-701, S. Korea
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36
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Hayashi R, Mutoh Y, Kasama T, Saito S. Synthesis of [3]Rotaxanes by the Combination of Copper-Mediated Coupling Reaction and Metal-Template Approach. J Org Chem 2015; 80:7536-46. [PMID: 26161508 DOI: 10.1021/acs.joc.5b01120] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
Abstract
[3]Rotaxanes with two axle components and one ring component were synthesized by the combination of a coupling reaction using a transition-metal catalyst and a metal-template approach. Thus, [2]rotaxanes were prepared by the oxidative dimerization of alkyne promoted by macrocyclic phenanthroline-CuI complexes. The [2]rotaxane was reacted with a Cu(I) salt and an acyclic ligand to generate a tetrahedral Cu(I) complex. Metal-free [3]rotaxane was isolated by the end-capping reaction of the acyclic ligand, followed by the removal of Cu(I) ion. The stability of the tetrahedral Cu(I) complexes depended on the size of both the ring component and the acyclic ligand, which was correlated with the yield of the corresponding [3]rotaxane.
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Affiliation(s)
- Ryuto Hayashi
- †Department of Chemistry, Faculty of Science, Tokyo University of Science, Kagurazaka, Shinjuku, Tokyo 162-8601, Japan
| | - Yuichiro Mutoh
- †Department of Chemistry, Faculty of Science, Tokyo University of Science, Kagurazaka, Shinjuku, Tokyo 162-8601, Japan
| | - Takeshi Kasama
- ‡Research Center for Medical and Dental Sciences, Tokyo Medical and Dental University, 1-5-45 Yushima, Bunkyo-ku, Tokyo 113-8510, Japan
| | - Shinichi Saito
- †Department of Chemistry, Faculty of Science, Tokyo University of Science, Kagurazaka, Shinjuku, Tokyo 162-8601, Japan
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37
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Hoekman S, Kitching MO, Leigh DA, Papmeyer M, Roke D. Goldberg Active Template Synthesis of a [2]Rotaxane Ligand for Asymmetric Transition-Metal Catalysis. J Am Chem Soc 2015; 137:7656-9. [DOI: 10.1021/jacs.5b04726] [Citation(s) in RCA: 96] [Impact Index Per Article: 9.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Steven Hoekman
- School of Chemistry, University of Manchester, Oxford
Road, Manchester, M13 9PL, United Kingdom
| | - Matthew O. Kitching
- School of Chemistry, University of Manchester, Oxford
Road, Manchester, M13 9PL, United Kingdom
| | - David A. Leigh
- School of Chemistry, University of Manchester, Oxford
Road, Manchester, M13 9PL, United Kingdom
| | - Marcus Papmeyer
- School of Chemistry, University of Manchester, Oxford
Road, Manchester, M13 9PL, United Kingdom
| | - Diederik Roke
- School of Chemistry, University of Manchester, Oxford
Road, Manchester, M13 9PL, United Kingdom
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38
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39
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Synthesis of interlocked compounds utilizing the catalytic activity of macrocyclic phenanthroline–Cu complexes. J INCL PHENOM MACRO 2015. [DOI: 10.1007/s10847-015-0511-1] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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40
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Neal EA, Goldup SM. Competitive formation of homocircuit [3]rotaxanes in synthetically useful yields in the bipyridine-mediated active template CuAAC reaction. Chem Sci 2015; 6:2398-2404. [PMID: 29308153 PMCID: PMC5645920 DOI: 10.1039/c4sc03999h] [Citation(s) in RCA: 46] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/24/2014] [Accepted: 02/03/2015] [Indexed: 01/30/2023] Open
Abstract
We recently identified competitive formation of doubly interlocked [3]rotaxanes as the origin of the non-linear variation in yield of [2]rotaxane with macrocycle size in the bipyridine-mediated AT-CuAAC reaction. Selection of reaction conditions gave [2]rotaxanes in essentially quantitative yield in all cases and hard to access doubly threaded [3]rotaxanes in up to 50% yield in a single, four component coupling. Based on the effect of macrocycle structure on the reaction outcome we propose a detailed mechanism of [3]rotaxane formation.
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Affiliation(s)
- Edward A Neal
- School of Biological and Chemical Sciences , Queen Mary University of London , Mile End Road , London , E1 4NS , UK
| | - Stephen M Goldup
- Department of Chemistry , University of Southampton , Highfield , Southampton , Hampshire SO17 1BJ , UK .
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41
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Xue M, Yang Y, Chi X, Yan X, Huang F. Development of Pseudorotaxanes and Rotaxanes: From Synthesis to Stimuli-Responsive Motions to Applications. Chem Rev 2015; 115:7398-501. [DOI: 10.1021/cr5005869] [Citation(s) in RCA: 605] [Impact Index Per Article: 60.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
Affiliation(s)
- Min Xue
- State Key Laboratory of Chemical Engineering, Center for Chemistry of High-Performance & Novel Materials, Department of Chemistry, Zhejiang University, Hangzhou 310027, People’s Republic of China
| | - Yong Yang
- Department
of Chemistry, Zhejiang Sci-Tech University, Hangzhou 310018, People’s Republic of China
| | - Xiaodong Chi
- State Key Laboratory of Chemical Engineering, Center for Chemistry of High-Performance & Novel Materials, Department of Chemistry, Zhejiang University, Hangzhou 310027, People’s Republic of China
| | - Xuzhou Yan
- State Key Laboratory of Chemical Engineering, Center for Chemistry of High-Performance & Novel Materials, Department of Chemistry, Zhejiang University, Hangzhou 310027, People’s Republic of China
| | - Feihe Huang
- State Key Laboratory of Chemical Engineering, Center for Chemistry of High-Performance & Novel Materials, Department of Chemistry, Zhejiang University, Hangzhou 310027, People’s Republic of China
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42
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Yamashita Y, Mutoh Y, Yamasaki R, Kasama T, Saito S. Synthesis of [3]rotaxanes that utilize the catalytic activity of a macrocyclic phenanthroline-Cu Complex: remarkable effect of the length of the axle precursor. Chemistry 2014; 21:2139-45. [PMID: 25470127 DOI: 10.1002/chem.201405090] [Citation(s) in RCA: 31] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/02/2014] [Indexed: 11/08/2022]
Abstract
[3]Rotaxanes, which consist of one macrocyclic phenanthroline compound and two axle components, were prepared by the oxidative dimerization of an alkyne compound with bulky tris[4'-cyclohexyl-(1,1'-biphenyl)-4-yl]methyl blocking group. The catalytic activity of a macrocyclic phenanthroline-Cu complex was utilized to thread the two axle components inside the ring. The alkyne compound with chain of 15 or 20 methylene groups gave [3]rotaxanes in high yields, whereas the axle with a chain of six methylene groups afforded a [3]rotaxane in very poor yield. We also examined the effect of the ring size on the synthesis of [3]rotaxanes. [3]Rotaxanes were not isolated when a macrocyclic phenanthroline compound with a smaller ring size was used.
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Affiliation(s)
- Yoshiaki Yamashita
- Department of Chemistry, Faculty of Science, Tokyo University of Science, 1-3 Kagurazaka, Shinjuku, Tokyo 162-8601 (Japan)
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43
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Affiliation(s)
- David A. Leigh
- School of Chemistry, University of Manchester, Oxford Road, Manchester M13 9PL, United Kingdom
| | - Vanesa Marcos
- School of Chemistry, University of Manchester, Oxford Road, Manchester M13 9PL, United Kingdom
| | - Miriam R. Wilson
- School of Chemistry, University of Manchester, Oxford Road, Manchester M13 9PL, United Kingdom
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44
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Bazzicalupi C, Bianchi A, Biver T, Giorgi C, Santarelli S, Savastano M. Formation of Double-Strand Dimetallic Helicates with a Terpyridine-Based Macrocycle. Inorg Chem 2014; 53:12215-24. [DOI: 10.1021/ic502329s] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Carla Bazzicalupi
- Department
of Chemistry “Ugo Schiff”, University of Florence, Via della Lastruccia 3, 50019 Sesto Fiorentino, Italy
| | - Antonio Bianchi
- Department
of Chemistry “Ugo Schiff”, University of Florence, Via della Lastruccia 3, 50019 Sesto Fiorentino, Italy
| | - Tarita Biver
- Department
of Chemistry and Industrial Chemistry, University of Pisa, Via Moruzzi
3, 56124 Pisa, Italy
| | - Claudia Giorgi
- Department
of Chemistry “Ugo Schiff”, University of Florence, Via della Lastruccia 3, 50019 Sesto Fiorentino, Italy
| | - Samuele Santarelli
- Eni S.p.A., Centro Ricerche per le Energie
non Convenzionali, Istituto Eni-Donegani, Via G. Fauser 4, 28100 Novara, Italy
| | - Matteo Savastano
- Department
of Chemistry “Ugo Schiff”, University of Florence, Via della Lastruccia 3, 50019 Sesto Fiorentino, Italy
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45
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Inouye M, Hayashi K, Yonenaga Y, Itou T, Fujimoto K, Uchida TA, Iwamura M, Nozaki K. A Doubly Alkynylpyrene-Threaded [4]Rotaxane That Exhibits Strong Circularly Polarized Luminescence from the Spatially Restricted Excimer. Angew Chem Int Ed Engl 2014. [DOI: 10.1002/ange.201408193] [Citation(s) in RCA: 50] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
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46
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Inouye M, Hayashi K, Yonenaga Y, Itou T, Fujimoto K, Uchida TA, Iwamura M, Nozaki K. A Doubly Alkynylpyrene-Threaded [4]Rotaxane That Exhibits Strong Circularly Polarized Luminescence from the Spatially Restricted Excimer. Angew Chem Int Ed Engl 2014; 53:14392-6. [DOI: 10.1002/anie.201408193] [Citation(s) in RCA: 154] [Impact Index Per Article: 14.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/12/2014] [Indexed: 11/10/2022]
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47
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Browne C, Ronson TK, Nitschke JR. Palladium-Templated Subcomponent Self-Assembly of Macrocycles, Catenanes, and Rotaxanes. Angew Chem Int Ed Engl 2014. [DOI: 10.1002/ange.201406164] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
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48
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Browne C, Ronson TK, Nitschke JR. Palladium-Templated Subcomponent Self-Assembly of Macrocycles, Catenanes, and Rotaxanes. Angew Chem Int Ed Engl 2014; 53:10701-5. [DOI: 10.1002/anie.201406164] [Citation(s) in RCA: 43] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/12/2014] [Indexed: 11/11/2022]
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49
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Bordoli R, Goldup SM. An efficient approach to mechanically planar chiral rotaxanes. J Am Chem Soc 2014; 136:4817-20. [PMID: 24559064 PMCID: PMC3977585 DOI: 10.1021/ja412715m] [Citation(s) in RCA: 119] [Impact Index Per Article: 10.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/14/2013] [Indexed: 01/08/2023]
Abstract
We describe the first method for production of mechanically planar chiral rotaxanes in excellent enantiopurity without the use of chiral separation techniques and, for the first time, unambiguously assign the absolute stereochemistry of the products. This proof-of-concept study, which employs a chiral pool sugar as the source of asymmetry and a high-yielding active template reaction for mechanical bond formation, finally opens the door to detailed investigation of these challenging targets.
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Affiliation(s)
- Robert
J. Bordoli
- School of Biological and
Chemical Sciences, Queen Mary University
of London, Mile End Road, London E1 4NS, U.K.
| | - Stephen M. Goldup
- School of Biological and
Chemical Sciences, Queen Mary University
of London, Mile End Road, London E1 4NS, U.K.
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50
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Durola F, Heitz V, Reviriego F, Roche C, Sauvage JP, Sour A, Trolez Y. Cyclic [4]rotaxanes containing two parallel porphyrinic plates: toward switchable molecular receptors and compressors. Acc Chem Res 2014; 47:633-45. [PMID: 24428574 DOI: 10.1021/ar4002153] [Citation(s) in RCA: 86] [Impact Index Per Article: 7.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Twenty years ago, researchers considered the synthesis of simple rotaxanes a challenging task, but with the rapid development of this field, chemists now view these interlocking molecules as accessible synthetic targets. In a major advance for the field, researchers have developed transition metals or organic molecules as templating structures, making it easier to construct these molecular systems. In addition, chemists have found ways to introduce new functional groups, which have given these compounds new properties. Today researchers can also construct multirotaxanes consisting of several individual components, but the synthesis of the most complex structures remains challenging. This Account primarily discusses the cyclic [4]rotaxanes incorporating porphyrins that the Strasbourg group has synthesized and studied during the past few years. These cyclic [4]rotaxanes consist of two rigid rods threaded through the four rings of two molecules of a bis-macrocycle, and the synthetic strategy used for making them relies on the copper(I)-driven "gathering-and-threading" reaction. The formation of the threaded precursors was mostly quantitative, and the quadruple stoppering reaction leading to the target compound produces high yields because of the efficient copper-catalyzed azide-alkyne cycloaddition (CuAAC) or click chemistry reaction. These rotaxanes behave as receptors for various ditopic guests. We prepared and studied two types of molecules: (i) a rigid compound whose copper(I) complex has a well-defined shape, with high selectivity for the guest geometry and (ii) a much more flexible [4]rotaxane host that could act as a distensible receptor. The rigid [4]rotaxane was crystallized, affording a spectacular X-ray structure that matched the expected chemical structure. In addition, metalation or demetalation of the rigid [4]rotaxane induces a drastic geometric rearrangement. The metal-free compound is flat without a binding pocket, while the copper-complexed species forms a rectangle-like structure. The removal of copper(I) also expels any complexed guest molecule, and this process is reversible, making the rigid porphyrinic [4]rotaxane a switchable receptor. The rigid [4]rotaxane was highly selective for short, ditopic guests in its copper(I)-complexed form, but the flexible copper(I)-complexed [4]rotaxane proved to be a versatile receptor. Its conformation can adjust to the size of the guest molecule similar to the induced fit mechanism that some enzymes employ with substrates.
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Affiliation(s)
- Fabien Durola
- Laboratoire de Chimie Organo-Minérale, Institut de Chimie, Université de Strasbourg-CNRS/UMR7177, 4 rue Blaise Pascal, 67070 Strasbourg Cedex, France
| | - Valérie Heitz
- Laboratoire de Chimie Organo-Minérale, Institut de Chimie, Université de Strasbourg-CNRS/UMR7177, 4 rue Blaise Pascal, 67070 Strasbourg Cedex, France
| | - Felipe Reviriego
- Laboratoire de Chimie Organo-Minérale, Institut de Chimie, Université de Strasbourg-CNRS/UMR7177, 4 rue Blaise Pascal, 67070 Strasbourg Cedex, France
| | - Cécile Roche
- Laboratoire de Chimie Organo-Minérale, Institut de Chimie, Université de Strasbourg-CNRS/UMR7177, 4 rue Blaise Pascal, 67070 Strasbourg Cedex, France
| | - Jean-Pierre Sauvage
- Laboratoire de Chimie Organo-Minérale, Institut de Chimie, Université de Strasbourg-CNRS/UMR7177, 4 rue Blaise Pascal, 67070 Strasbourg Cedex, France
| | - Angélique Sour
- Laboratoire de Chimie Organo-Minérale, Institut de Chimie, Université de Strasbourg-CNRS/UMR7177, 4 rue Blaise Pascal, 67070 Strasbourg Cedex, France
| | - Yann Trolez
- Laboratoire de Chimie Organo-Minérale, Institut de Chimie, Université de Strasbourg-CNRS/UMR7177, 4 rue Blaise Pascal, 67070 Strasbourg Cedex, France
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