1
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Yasir M, Singh M, Kilbinger AFM. A Single Functionalization Agent for Heterotelechelic ROMP Polymers. ACS Macro Lett 2022; 11:813-817. [PMID: 35674524 DOI: 10.1021/acsmacrolett.2c00234] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
Abstract
Heterotelechelic polymers are an important class of materials finding applications in bioconjugation, imaging, sensing, and synthesis of organic/inorganic hybrid systems with interesting features. However, the synthesis of such polymers is challenging. Here, we report a mechanistically unique and most efficient method based on a single functionalization agent to prepare heterotelechelic polymers by a ring-opening metathesis polymerization. Different functionalization agents can be synthesized in one simple step from inexpensive commercial starting materials. The functionalization agents initially generate a functional initiator from commercial Grubbs' first-generation ruthenium benzylidene catalyst. During this process, a functional dihydrofuran derivative is produced. After functional initiation and propagation of a suitable monomer, the dihydrofuran derivative functionally terminates the polymerization yielding a primary alcohol-terminated heterotelechelic polymer. Molecular weight control is achieved by varying the ratio between monomer and Grubbs' first-generation catalyst. This method may emerge as a popular choice to prepare heterotelechelic polymers due to its simplicity and efficiency.
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Affiliation(s)
- Mohammad Yasir
- Department of Chemistry, University of Fribourg, Chemin du Musée 9, CH-1700 Fribourg, Switzerland
| | - Manvendra Singh
- Department of Chemistry, University of Fribourg, Chemin du Musée 9, CH-1700 Fribourg, Switzerland
| | - Andreas F M Kilbinger
- Department of Chemistry, University of Fribourg, Chemin du Musée 9, CH-1700 Fribourg, Switzerland
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2
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Davis HC, Posey ND, Tew GN. Protein Binding and Release by Polymeric Cell-Penetrating Peptide Mimics. Biomacromolecules 2021; 23:57-66. [PMID: 34879198 DOI: 10.1021/acs.biomac.1c00929] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
Abstract
There is significant potential in exploiting antibody specificity to develop new therapeutic treatments. However, intracellular protein delivery is a paramount challenge because of the difficulty in transporting large, polar molecules across cell membranes. Cell-penetrating peptide mimics (CPPMs) are synthetic polymers that are versatile materials for intracellular delivery of biological molecules, including nucleic acids and proteins, with superior performance compared to their natural counterparts and commercially available peptide-based reagents. Studies have demonstrated that noncovalent complexation with these synthetic carriers is necessary for the delivery of proteins, but the fundamental interactions dominating CPPM-protein complexation are not well understood. Beyond these interactions, the mechanism of release for many noncovalent carriers is not well established. Herein, interactions expected to be critical in CPPM-protein binding and unbinding were explored, including hydrogen bonding, electrostatics, and hydrophobic interactions. Despite the guanidinium-rich functionality of these polymeric carriers, hydrogen bonding was shown not to be a dominant interaction in CPPM-protein binding. Fluorescence quenching assays were used to decouple the effect of electrostatic and hydrophobic interactions between amphiphilic CPPMs and proteins. Furthermore, by conducting competition assays with other proteins, unbinding of protein cargoes from CPPM-protein complexes was demonstrated and provided insight into mechanisms of protein release. This work offers understanding toward the role of carrier and cargo binding and unbinding in intracellular outcomes. In turn, an improved fundamental understanding of noncovalent polymer-protein complexation will enable more effective methods for intracellular protein delivery.
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Affiliation(s)
- Hazel C Davis
- Department of Polymer Science & Engineering, University of Massachusetts, Amherst, Massachusetts 01003, United States
| | - Nicholas D Posey
- Department of Polymer Science & Engineering, University of Massachusetts, Amherst, Massachusetts 01003, United States
| | - Gregory N Tew
- Department of Polymer Science & Engineering, University of Massachusetts, Amherst, Massachusetts 01003, United States.,Molecular and Cellular Biology Program, University of Massachusetts, Amherst, Massachusetts 01003, United States.,Department of Veterinary & Animal Sciences, University of Massachusetts, Amherst, Massachusetts 01003, United States
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3
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Hango CR, Backlund CM, Davis HC, Posey ND, Minter LM, Tew GN. Non-Covalent Carrier Hydrophobicity as a Universal Predictor of Intracellular Protein Activity. Biomacromolecules 2021; 22:2850-2863. [PMID: 34156837 DOI: 10.1021/acs.biomac.1c00242] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Abstract
Over the past decade, extensive optimization of polymeric cell-penetrating peptide (CPP) mimics (CPPMs) by our group has generated a substantial library of broadly effective carriers which circumvent the need for covalent conjugation often required by CPPs. In this study, design rules learned from CPPM development were applied to reverse-engineer the first library of simple amphiphilic block copolypeptides for non-covalent protein delivery, namely, poly(alanine-block-arginine), poly(phenylalanine-block-arginine), and poly(tryptophan-block-arginine). This new CPP library was screened for enhanced green fluorescent protein and Cre recombinase delivery alongside a library of CPPMs featuring equivalent side-chain configurations. Due to the added hydrophobicity imparted by the polymer backbone as compared to the polypeptide backbone, side-chain functionality was not a universal predictor of carrier performance. Rather, overall carrier hydrophobicity predicted the top performers for both internalization and activity of protein cargoes, regardless of backbone identity. Furthermore, comparison of protein uptake and function revealed carriers which facilitated high gene recombination despite remarkably low Cre internalization, leading us to formalize the concept of intracellular availability (IA) of the delivered cargo. IA, a measure of cargo activity per quantity of cargo internalized, provides valuable insight into the physical relationship between cellular internalization and bioavailability, which can be affected by bottlenecks such as endosomal escape and cargo release. Importantly, carriers with maximal IA existed within a narrow hydrophobicity window, more hydrophilic than those exhibiting maximal cargo uptake. Hydrophobicity may be used as a scaffold-independent predictor of protein uptake, function, and IA, enabling identification of new, effective carriers which would be overlooked by uptake-based screening methods.
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Affiliation(s)
- Christopher R Hango
- Department of Polymer Science & Engineering, University of Massachusetts Amherst, Amherst, Massachusetts 01003, United States
| | - Coralie M Backlund
- Department of Polymer Science & Engineering, University of Massachusetts Amherst, Amherst, Massachusetts 01003, United States
| | - Hazel C Davis
- Department of Polymer Science & Engineering, University of Massachusetts Amherst, Amherst, Massachusetts 01003, United States
| | - Nicholas D Posey
- Department of Polymer Science & Engineering, University of Massachusetts Amherst, Amherst, Massachusetts 01003, United States
| | - Lisa M Minter
- Molecular and Cellular Biology Program, University of Massachusetts, Amherst, Amherst, Massachusetts 01003, United States.,Department of Veterinary & Animal Sciences, University of Massachusetts, Amherst, Amherst, Massachusetts 01003, Untied States
| | - Gregory N Tew
- Department of Polymer Science & Engineering, University of Massachusetts Amherst, Amherst, Massachusetts 01003, United States.,Molecular and Cellular Biology Program, University of Massachusetts, Amherst, Amherst, Massachusetts 01003, United States.,Department of Veterinary & Animal Sciences, University of Massachusetts, Amherst, Amherst, Massachusetts 01003, Untied States
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4
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Paulovičová E, Kroneková Z, Paulovičová L, Majerčíková M, Kronek J. Cell-Mediated Immunoreactivity of Poly(2-isopropenyl-2-oxazoline) as Promising Formulation for Immunomodulation. MATERIALS 2021; 14:ma14061371. [PMID: 33809040 PMCID: PMC7999147 DOI: 10.3390/ma14061371] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 12/20/2020] [Revised: 02/16/2021] [Accepted: 03/08/2021] [Indexed: 11/16/2022]
Abstract
Poly(2-isopropenyl-2-oxazoline) (PIPOx) represents a functional polymer with high potential for drug delivery, tissue engineering, and immunomodulation. The immunomodulatory efficiency of the PIPOx formulation has been studied in vitro following splenic cells and RAW 264.7 macrophages exposition. The cell-specific immunomodulative effect on production of Th1, Th2, Th17, and Treg signature cytokines has been demonstrated. The impact on the functionality of PIPOx-sensitized RAW 264.7 macrophages was assessed by cell phagocytosis. Time- and concentration-dependent cell internalization and intracellular organelles colocalization of fluorescently labeled PIPOx has been examined. The in vitro results demonstrated the PIPOx bioavailability and the capability of triggering immune cell responses resulting in the induced production of cell-specific signature interleukins, important prerequisite properties for future potential biomedical applications.
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Affiliation(s)
- Ema Paulovičová
- Immunol & Cell Culture Laboratories, Department Immunochemistry of Glycoconjugates, Center of Glycomics, Institute of Chemistry, Slovak Academy of Sciences, Dúbravská cesta 9, 845 38 Bratislava, Slovakia; (E.P.); (L.P.)
| | - Zuzana Kroneková
- Department for Biomaterials Research, Polymer Institute, Slovak Academy of Sciences, Dúbravská cesta 9, 845 41 Bratislava, Slovakia; (Z.K.); (M.M.)
| | - Lucia Paulovičová
- Immunol & Cell Culture Laboratories, Department Immunochemistry of Glycoconjugates, Center of Glycomics, Institute of Chemistry, Slovak Academy of Sciences, Dúbravská cesta 9, 845 38 Bratislava, Slovakia; (E.P.); (L.P.)
| | - Monika Majerčíková
- Department for Biomaterials Research, Polymer Institute, Slovak Academy of Sciences, Dúbravská cesta 9, 845 41 Bratislava, Slovakia; (Z.K.); (M.M.)
| | - Juraj Kronek
- Department for Biomaterials Research, Polymer Institute, Slovak Academy of Sciences, Dúbravská cesta 9, 845 41 Bratislava, Slovakia; (Z.K.); (M.M.)
- Correspondence: ; Tel.: +421-2-3229-4366
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5
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Birchall LT, Shehata S, McCarthy S, Shepherd HJ, Clark ER, Serpell CJ, Biagini SCG. Supramolecular behaviour and fluorescence of rhodamine-functionalised ROMP polymers. Polym Chem 2020. [DOI: 10.1039/d0py00799d] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/20/2023]
Abstract
A ROMP platform leading to rhodamine B containing amphiphilic block copolymers, which self-assemble into micelles which are able to sequester molecular dyes and interact with them by energy transfer. The polymer micelles do not interact with DNA.
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Affiliation(s)
- Lee T. Birchall
- Supramolecular
- Interfacial
- and Synthetic Chemistry Group
- School of Physical Sciences
- Ingram Building
| | - Sara Shehata
- Supramolecular
- Interfacial
- and Synthetic Chemistry Group
- School of Physical Sciences
- Ingram Building
| | - Sean McCarthy
- Supramolecular
- Interfacial
- and Synthetic Chemistry Group
- School of Physical Sciences
- Ingram Building
| | - Helena J. Shepherd
- Supramolecular
- Interfacial
- and Synthetic Chemistry Group
- School of Physical Sciences
- Ingram Building
| | - Ewan R. Clark
- Supramolecular
- Interfacial
- and Synthetic Chemistry Group
- School of Physical Sciences
- Ingram Building
| | - Christopher J. Serpell
- Supramolecular
- Interfacial
- and Synthetic Chemistry Group
- School of Physical Sciences
- Ingram Building
| | - Stefano C. G. Biagini
- Supramolecular
- Interfacial
- and Synthetic Chemistry Group
- School of Physical Sciences
- Ingram Building
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6
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Tabujew I, Heidari M, Freidel C, Helm M, Tebbe L, Wolfrum U, Nagel-Wolfrum K, Koynov K, Biehl P, Schacher FH, Potestio R, Peneva K. Tackling the Limitations of Copolymeric Small Interfering RNA Delivery Agents by a Combined Experimental–Computational Approach. Biomacromolecules 2019; 20:4389-4406. [DOI: 10.1021/acs.biomac.9b01061] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Ilja Tabujew
- Institute of Organic Chemistry and Macromolecular Chemistry, Friedrich Schiller University Jena, Lessingstraße 8, 07743 Jena, Germany
| | - Maziar Heidari
- Max Planck Institute for Polymer Research, Ackermannweg 10, 55128 Mainz, Germany
| | - Christoph Freidel
- Max Planck Institute for Polymer Research, Ackermannweg 10, 55128 Mainz, Germany
| | - Mark Helm
- Institute of Pharmacy and Biochemistry, Johannes Gutenberg University Mainz, Staudingerweg 5, 55128 Mainz, Germany
| | - Lars Tebbe
- Institute of Zoology, Johannes Gutenberg University Mainz, Muellerweg 6, 55099 Mainz, Germany
| | - Uwe Wolfrum
- Institute of Zoology, Johannes Gutenberg University Mainz, Muellerweg 6, 55099 Mainz, Germany
| | - Kerstin Nagel-Wolfrum
- Institute of Zoology, Johannes Gutenberg University Mainz, Muellerweg 6, 55099 Mainz, Germany
| | - Kaloian Koynov
- Max Planck Institute for Polymer Research, Ackermannweg 10, 55128 Mainz, Germany
| | - Philip Biehl
- Institute of Organic Chemistry and Macromolecular Chemistry, Friedrich Schiller University Jena, Lessingstraße 8, 07743 Jena, Germany
| | - Felix H. Schacher
- Institute of Organic Chemistry and Macromolecular Chemistry, Friedrich Schiller University Jena, Lessingstraße 8, 07743 Jena, Germany
| | - Raffaello Potestio
- Physics Department, University of Trento, Via Sommarive 14, I-38123 Trento, Italy
- INFN-TIFPA, Trento Institute for Fundamental Physics and Applications, Via Sommarive 14, I-38123 Trento, Italy
| | - Kalina Peneva
- Institute of Organic Chemistry and Macromolecular Chemistry, Friedrich Schiller University Jena, Lessingstraße 8, 07743 Jena, Germany
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7
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Fishman JM, Zwick DB, Kruger AG, Kiessling LL. Chemoselective, Postpolymerization Modification of Bioactive, Degradable Polymers. Biomacromolecules 2019; 20:1018-1027. [PMID: 30608163 PMCID: PMC6690479 DOI: 10.1021/acs.biomac.8b01631] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Abstract
Degradable polymers promote sustainability, mitigate environmental impact, and facilitate biological applications. Tailoring degradable polymers is challenging because installing functional group-rich side chains is difficult when the backbone itself is susceptible to degradation. A convenient means of side chain installation is through postpolymerization modification (PPM). In functionalizing polyoxazinones, a class of degradable polymers generated by the ring-opening metathesis polymerization (ROMP), we predictably found PPM challenging. Even the versatile azide-alkyne cycloaddition click reaction was ineffective. To solve this problem, we screened PPM reactions whose efficiencies could be assessed using photochemistry (excimer formation). The mildest, pH-neutral process was functionalization of a ketone-containing polymer to yield either oxime (acid labile)- or alkyoxylamine (stable)-substituted polymers. Using this approach, we equipped polymers with fluorophores, reporter groups, and bioactive epitopes. These modifications imbued the polymers with distinctive spectral properties and biological activities. Thus, polyoxazinones are now tunable through a modular method to diversify these macromolecules' function.
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Affiliation(s)
- Joshua M. Fishman
- Department of Chemistry, University of Wisconsin
– Madison, Madison, WI 53706
| | - Daniel B. Zwick
- Department of Biochemisry, University of
Wisconsin – Madison, Madison, WI 53706
| | - Austin G. Kruger
- Department of Chemistry, University of Wisconsin
– Madison, Madison, WI 53706
| | - Laura L. Kiessling
- Department of Chemistry, University of Wisconsin
– Madison, Madison, WI 53706
- Department of Biochemisry, University of
Wisconsin – Madison, Madison, WI 53706
- Department of Chemistry, Massachusetts Institute
of Techology, Cambridge, MA 02139
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8
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Iegre J, Ahmed NS, Gaynord JS, Wu Y, Herlihy KM, Tan YS, Lopes-Pires ME, Jha R, Lau YH, Sore HF, Verma C, O' Donovan DH, Pugh N, Spring DR. Stapled peptides as a new technology to investigate protein-protein interactions in human platelets. Chem Sci 2018; 9:4638-4643. [PMID: 29899957 PMCID: PMC5969508 DOI: 10.1039/c8sc00284c] [Citation(s) in RCA: 27] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/18/2018] [Accepted: 04/23/2018] [Indexed: 12/14/2022] Open
Abstract
We describe the first application of stapled peptides in human platelets. Bim BH3 stapled peptides are used to overcome the limitations of traditional methods and uncover a new role for Bim in platelet activation.
Platelets are blood cells with numerous crucial pathophysiological roles in hemostasis, cardiovascular thrombotic events and cancer metastasis. Platelet activation requires the engagement of intracellular signalling pathways that involve protein–protein interactions (PPIs). A better understanding of these pathways is therefore crucial for the development of selective anti-platelet drugs. New strategies for studying PPIs in human platelets are required to overcome limitations associated with conventional platelet research methods. For example, small molecule inhibitors can lack selectivity and are often difficult to design and synthesise. Additionally, development of transgenic animal models is costly and time-consuming and conventional recombinant techniques are ineffective due to the lack of a nucleus in platelets. Herein, we describe the generation of a library of novel, functionalised stapled peptides and their first application in the investigation of platelet PPIs. Moreover, the use of platelet-permeable stapled Bim BH3 peptides confirms the part of Bim in phosphatidyl-serine (PS) exposure and reveals a role for the Bim protein in platelet activatory processes. Our work demonstrates that functionalised stapled peptides are a complementary alternative to conventional platelet research methods, and could make a significant contribution to the understanding of platelet signalling pathways and hence to the development of anti-platelet drugs.
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Affiliation(s)
- Jessica Iegre
- Department of Chemistry , University of Cambridge , CB2 1EW , UK .
| | - Niaz S Ahmed
- Department of Biomedical and Forensic Sciences , Anglia Ruskin University , CB1 1PT , UK .
| | | | - Yuteng Wu
- Department of Chemistry , University of Cambridge , CB2 1EW , UK .
| | - Kara M Herlihy
- Discovery Sciences , IMED Biotech Unit , AstraZeneca , Cambridge , UK
| | - Yaw Sing Tan
- Bioinformatics Institute , Agency for Science, Technology and Research (ASTAR) , 30 Biopolis Street, #07-01 Matrix , 13867 , Singapore
| | - Maria E Lopes-Pires
- Department of Biomedical and Forensic Sciences , Anglia Ruskin University , CB1 1PT , UK .
| | - Rupam Jha
- Discovery Sciences , IMED Biotech Unit , AstraZeneca , Cambridge , UK
| | - Yu Heng Lau
- Department of Chemistry , University of Cambridge , CB2 1EW , UK . .,School of Chemistry , The University of Sydney , NSW 2006 , Australia
| | - Hannah F Sore
- Department of Chemistry , University of Cambridge , CB2 1EW , UK .
| | - Chandra Verma
- Bioinformatics Institute , Agency for Science, Technology and Research (ASTAR) , 30 Biopolis Street, #07-01 Matrix , 13867 , Singapore.,Department of Biological Sciences , National University of Singapore , 14 Science Drive 4 , Singapore 117543.,School of Biological Sciences , Nanyang Technological University , 60 Nanyang Drive , Singapore 637551
| | | | - Nicholas Pugh
- Department of Biomedical and Forensic Sciences , Anglia Ruskin University , CB1 1PT , UK .
| | - David R Spring
- Department of Chemistry , University of Cambridge , CB2 1EW , UK .
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9
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Pal S, Lucarini F, Ruggi A, Kilbinger AFM. Functional Metathesis Catalyst Through Ring Closing Enyne Metathesis: One Pot Protocol for Living Heterotelechelic Polymers. J Am Chem Soc 2018; 140:3181-3185. [DOI: 10.1021/jacs.7b12805] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Subhajit Pal
- Department of Chemistry, University of Fribourg, Chemin du Musée 9, CH-1700 Fribourg, Switzerland
| | - Fiorella Lucarini
- Department of Chemistry, University of Fribourg, Chemin du Musée 9, CH-1700 Fribourg, Switzerland
| | - Albert Ruggi
- Department of Chemistry, University of Fribourg, Chemin du Musée 9, CH-1700 Fribourg, Switzerland
| | - Andreas F. M. Kilbinger
- Department of Chemistry, University of Fribourg, Chemin du Musée 9, CH-1700 Fribourg, Switzerland
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10
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Riga EK, Boschert D, Vöhringer M, Widyaya VT, Kurowska M, Hartleb W, Lienkamp K. Fluorescent ROMP Monomers and Copolymers for Biomedical Applications. MACROMOL CHEM PHYS 2017; 218:1700273. [PMID: 34404977 PMCID: PMC7611511 DOI: 10.1002/macp.201700273] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Abstract
The synthesis and characterization of a series of green, blue and red-fluorescent exo-oxanorbornene acid and imide monomers carrying nitrobenzofurazan, coumarin, and Rhodamin B, respectively, as fluorophores is presented. These monomers carry oxanorbornene as polymerizable unit, and were readily copolymerized with bioactive functional oxanorbornene monomers by ring-opening metathesis polymerization (ROMP), as demonstrated by gel permeation chromatography and NMR spectroscopy. Due to the ease of synthesis of these monomers, and their cost-effectiveness compared many to other fluorescent probes, they are useful for biomaterials applications.
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Affiliation(s)
| | | | | | | | | | | | - Karen Lienkamp
- Bioactive Polymer Synthesis and Surface Engineering Group, Department of Microsystems Engineering (IMTEK) and Freiburg Center for Interactive Materials and Bioinspired Technologies (FIT), Georges-Köhler-Allee 105, 79110 Freiburg, Germany
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11
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Pifferi C, Daskhan GC, Fiore M, Shiao TC, Roy R, Renaudet O. Aminooxylated Carbohydrates: Synthesis and Applications. Chem Rev 2017; 117:9839-9873. [PMID: 28682060 DOI: 10.1021/acs.chemrev.6b00733] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Abstract
Among other classes of biomolecules, carbohydrates and glycoconjugates are widely involved in numerous biological functions. In addition to addressing the related synthetic challenges, glycochemists have invested intense efforts in providing access to structures that can be used to study, activate, or inhibit these biological processes. Over the past few decades, aminooxylated carbohydrates have been found to be key building blocks for achieving these goals. This review provides the first in-depth overview covering several aspects related to the syntheses and applications of aminooxylated carbohydrates. After a brief introduction to oxime bonds and their relative stabilities compared to related C═N functions, synthetic aspects of oxime ligation and methodologies for introducing the aminooxy functionality onto both glycofuranosyls and glycopyranosyls are described. The subsequent section focuses on biological applications involving aminooxylated carbohydrates as components for the construcion of diverse architectures. Mimetics of natural structures represent useful tools for better understanding the features that drive carbohydrate-receptor interaction, their biological output and they also represent interesting structures with improved stability and tunable properties. In the next section, multivalent structures such as glycoclusters and glycodendrimers obtained through oxime ligation are described in terms of synthetic design and their biological applications such as immunomodulators. The second-to-last section discusses miscellaneous applications of oxime-based glycoconjugates, such as enantioselective catalysis and glycosylated oligonucleotides, and conclusions and perspectives are provided in the last section.
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Affiliation(s)
- Carlo Pifferi
- Université Grenoble Alpes, CNRS, DCM UMR 5250 , F-38000 Grenoble, France
| | - Gour Chand Daskhan
- Université Grenoble Alpes, CNRS, DCM UMR 5250 , F-38000 Grenoble, France
| | - Michele Fiore
- Université Grenoble Alpes, CNRS, DCM UMR 5250 , F-38000 Grenoble, France
| | - Tze Chieh Shiao
- Pharmaqam, Department of Chemistry, Université du Québec à Montreal , P.O. Box 8888, Succursale Centre-ville, Montréal, Québec H3C 3P8, Canada
| | - René Roy
- Pharmaqam, Department of Chemistry, Université du Québec à Montreal , P.O. Box 8888, Succursale Centre-ville, Montréal, Québec H3C 3P8, Canada
| | - Olivier Renaudet
- Université Grenoble Alpes, CNRS, DCM UMR 5250 , F-38000 Grenoble, France.,Institut Universitaire de France , 103 Boulevard Saint-Michel, 75005 Paris, France
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12
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Sarapas JM, Backlund CM, deRonde BM, Minter LM, Tew GN. ROMP- and RAFT-Based Guanidinium-Containing Polymers as Scaffolds for Protein Mimic Synthesis. Chemistry 2017; 23:6858-6863. [PMID: 28370636 PMCID: PMC5551038 DOI: 10.1002/chem.201700423] [Citation(s) in RCA: 24] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/27/2017] [Indexed: 01/21/2023]
Abstract
Cell-penetrating peptides are an important class of molecules with promising applications in bioactive cargo delivery. A diverse series of guanidinium-containing polymeric cell-penetrating peptide mimics (CPPMs) with varying backbone chemistries was synthesized and assessed for delivery of both GFP and fluorescently tagged siRNA. Specifically, we examined CPPMs based on norbornene, methacrylate, and styrene backbones to determine how backbone structure impacted internalization of these two cargoes. Either charge content or degree of polymerization was held constant at 20, with diguanidinium norbornene molecules being polymerized to both 10 and 20 repeat units. Generally, homopolymer CPPMs delivered low amounts of siRNA into Jurkat T cells, with no apparent backbone dependence; however, by adding a short hydrophobic methyl methacrylate block to the guanidinium-rich methacrylate polymer, siRNA delivery to nearly the entire cell population was achieved. Protein internalization yielded similar results for most of the CPPMs, though the block polymer was unable to deliver proteins. In contrast, the styrene-based CPPM yielded the highest internalization for GFP (≈40 % of cells affected), showing that indeed backbone chemistry impacts protein delivery, specifically through the incorporation of an aromatic group. These results demonstrate that an understanding of how polymer structure affects cargo-dependent internalization is critical to designing new, more effective CPPMs.
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Affiliation(s)
- Joel M Sarapas
- Department of Polymer Science and Engineering, University of Massachusetts Amherst, Amherst, MA, 01003, USA
| | - Coralie M Backlund
- Department of Polymer Science and Engineering, University of Massachusetts Amherst, Amherst, MA, 01003, USA
| | - Brittany M deRonde
- Department of Polymer Science and Engineering, University of Massachusetts Amherst, Amherst, MA, 01003, USA
| | - Lisa M Minter
- Department of Molecular and Cellular Biology, Department of Veterinary and Animal Sciences, University of Massachusetts Amherst, Amherst, MA, 01003, USA
- Department of Veterinary and Animal Sciences, Department of Molecular and Cellular Biology, University of Massachusetts Amherst, Amherst, MA, 01003, USA
| | - Gregory N Tew
- Department of Polymer Science and Engineering, University of Massachusetts Amherst, Amherst, MA, 01003, USA
- Department of Molecular and Cellular Biology, Department of Veterinary and Animal Sciences, University of Massachusetts Amherst, Amherst, MA, 01003, USA
- Department of Veterinary and Animal Sciences, Department of Molecular and Cellular Biology, University of Massachusetts Amherst, Amherst, MA, 01003, USA
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13
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Mogaki R, Hashim PK, Okuro K, Aida T. Guanidinium-based “molecular glues” for modulation of biomolecular functions. Chem Soc Rev 2017; 46:6480-6491. [DOI: 10.1039/c7cs00647k] [Citation(s) in RCA: 72] [Impact Index Per Article: 10.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Abstract
This tutorial review highlights “molecular glues” designed for manipulation of biomolecular assemblies, drug delivery systems, and modulation of biomolecular functions.
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Affiliation(s)
- Rina Mogaki
- Department of Chemistry and Biotechnology, School of Engineering, The University of Tokyo
- Tokyo 113-8656
- Japan
| | - P. K. Hashim
- Department of Chemistry and Biotechnology, School of Engineering, The University of Tokyo
- Tokyo 113-8656
- Japan
| | - Kou Okuro
- Department of Chemistry and Biotechnology, School of Engineering, The University of Tokyo
- Tokyo 113-8656
- Japan
| | - Takuzo Aida
- Department of Chemistry and Biotechnology, School of Engineering, The University of Tokyo
- Tokyo 113-8656
- Japan
- Riken Center for Emergent Matter Science
- Saitama 351-0198
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14
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Gadwal I, Eom T, Hwang J, Choe Y, Bang J, Khan A. Addressing the mid-point of polymer chains for multiple functionalization purposes through sequential thiol–epoxy ‘click’ and esterification reactions. RSC Adv 2017. [DOI: 10.1039/c7ra02702h] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
A synthetic strategy is devised for the preparation of mid-chain multifunctional polymers.
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Affiliation(s)
- Ikhlas Gadwal
- Department of Chemical and Biological Engineering
- Korea University
- Seoul 02841
- Korea
| | - Taejun Eom
- Department of Chemical and Biological Engineering
- Korea University
- Seoul 02841
- Korea
| | - JiHyeon Hwang
- Department of Chemical and Biological Engineering
- Korea University
- Seoul 02841
- Korea
| | - Youngson Choe
- Department of Chemical Engineering
- Pusan National University
- Pusan
- Korea
| | - Joona Bang
- Department of Chemical and Biological Engineering
- Korea University
- Seoul 02841
- Korea
| | - Anzar Khan
- Department of Chemical and Biological Engineering
- Korea University
- Seoul 02841
- Korea
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15
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Peng K, Zou T, Ding W, Wang R, Guo J, Round JJ, Tu W, Liu C, Hu J. Development of contact-killing non-leaching antimicrobial guanidyl-functionalized polymers via click chemistry. RSC Adv 2017. [DOI: 10.1039/c7ra02706k] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023] Open
Abstract
A new contact-killing and non-leaching antimicrobial polymer was prepared by a robust, efficient and orthogonal click-chemistry.
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Affiliation(s)
- Kaimei Peng
- School of Chemistry and Chemical Engineering
- South China University of Technology
- Guangzhou 510640
- China
| | - Tao Zou
- School of Chemistry and Chemical Engineering
- South China University of Technology
- Guangzhou 510640
- China
| | - Wei Ding
- School of Chemistry and Chemical Engineering
- South China University of Technology
- Guangzhou 510640
- China
| | - Ruonan Wang
- School of Chemistry and Chemical Engineering
- South China University of Technology
- Guangzhou 510640
- China
| | - Jinshan Guo
- Aleo BME
- Inc.200 Innovation Blvd
- State College
- USA
| | | | - Weiping Tu
- School of Chemistry and Chemical Engineering
- South China University of Technology
- Guangzhou 510640
- China
| | - Chao Liu
- Aleo BME
- Inc.200 Innovation Blvd
- State College
- USA
| | - Jianqing Hu
- School of Chemistry and Chemical Engineering
- South China University of Technology
- Guangzhou 510640
- China
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16
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Caffrey LM, deRonde BM, Minter LM, Tew GN. Mapping Optimal Charge Density and Length of ROMP-Based PTDMs for siRNA Internalization. Biomacromolecules 2016; 17:3205-3212. [PMID: 27599388 PMCID: PMC5094354 DOI: 10.1021/acs.biomac.6b00900] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]
Abstract
A fundamental understanding of how polymer structure impacts internalization and delivery of biologically relevant cargoes, particularly small interfering ribonucleic acid (siRNA), is of critical importance to the successful design of improved delivery reagents. Herein we report the use of ring-opening metathesis polymerization (ROMP) methods to synthesize two series of guanidinium-rich protein transduction domain mimics (PTDMs): one based on an imide scaffold that contains one guanidinium moiety per repeat unit, and another based on a diester scaffold that contains two guanidinium moieties per repeat unit. By varying both the degree of polymerization and, in effect, the relative number of cationic charges in each PTDM, the performances of the two ROMP backbones for siRNA internalization were evaluated and compared. Internalization of fluorescently labeled siRNA into Jurkat T cells demonstrated that fluorescein isothiocyanate (FITC)-siRNA internalization had a charge content dependence, with PTDMs containing approximately 40 to 60 cationic charges facilitating the most internalization. Despite this charge content dependence, the imide scaffold yielded much lower viabilities in Jurkat T cells than the corresponding diester PTDMs with similar numbers of cationic charges, suggesting that the diester scaffold is preferred for siRNA internalization and delivery applications. These developments will not only improve our understanding of the structural factors necessary for optimal siRNA internalization, but will also guide the future development of optimized PTDMs for siRNA internalization and delivery.
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Affiliation(s)
- Leah M Caffrey
- Department of Polymer Science and Engineering, ‡Department of Veterinary and Animal Sciences, and §Molecular and Cellular Biology Program, University of Massachusetts Amherst , Amherst, Massachusetts 01003, United States
| | - Brittany M deRonde
- Department of Polymer Science and Engineering, ‡Department of Veterinary and Animal Sciences, and §Molecular and Cellular Biology Program, University of Massachusetts Amherst , Amherst, Massachusetts 01003, United States
| | - Lisa M Minter
- Department of Polymer Science and Engineering, ‡Department of Veterinary and Animal Sciences, and §Molecular and Cellular Biology Program, University of Massachusetts Amherst , Amherst, Massachusetts 01003, United States
| | - Gregory N Tew
- Department of Polymer Science and Engineering, ‡Department of Veterinary and Animal Sciences, and §Molecular and Cellular Biology Program, University of Massachusetts Amherst , Amherst, Massachusetts 01003, United States
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17
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Nagarkar AA, Yasir M, Crochet A, Fromm KM, Kilbinger AFM. Tandem Ring-Opening-Ring-Closing Metathesis for Functional Metathesis Catalysts. Angew Chem Int Ed Engl 2016. [DOI: 10.1002/ange.201604112] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Affiliation(s)
- Amit A. Nagarkar
- Department of Chemistry; University of Fribourg; Chemin du Musee 9 1700 Fribourg Switzerland
| | - Mohammad Yasir
- Department of Chemistry; University of Fribourg; Chemin du Musee 9 1700 Fribourg Switzerland
| | - Aurelien Crochet
- Department of Chemistry; University of Fribourg; Chemin du Musee 9 1700 Fribourg Switzerland
| | - Katharina M. Fromm
- Department of Chemistry; University of Fribourg; Chemin du Musee 9 1700 Fribourg Switzerland
| | - Andreas F. M. Kilbinger
- Department of Chemistry; University of Fribourg; Chemin du Musee 9 1700 Fribourg Switzerland
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18
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Nagarkar AA, Yasir M, Crochet A, Fromm KM, Kilbinger AFM. Tandem Ring-Opening-Ring-Closing Metathesis for Functional Metathesis Catalysts. Angew Chem Int Ed Engl 2016; 55:12343-6. [DOI: 10.1002/anie.201604112] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/01/2016] [Revised: 06/17/2016] [Indexed: 11/06/2022]
Affiliation(s)
- Amit A. Nagarkar
- Department of Chemistry; University of Fribourg; Chemin du Musee 9 1700 Fribourg Switzerland
| | - Mohammad Yasir
- Department of Chemistry; University of Fribourg; Chemin du Musee 9 1700 Fribourg Switzerland
| | - Aurelien Crochet
- Department of Chemistry; University of Fribourg; Chemin du Musee 9 1700 Fribourg Switzerland
| | - Katharina M. Fromm
- Department of Chemistry; University of Fribourg; Chemin du Musee 9 1700 Fribourg Switzerland
| | - Andreas F. M. Kilbinger
- Department of Chemistry; University of Fribourg; Chemin du Musee 9 1700 Fribourg Switzerland
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19
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McKinlay CJ, Waymouth RM, Wender PA. Cell-Penetrating, Guanidinium-Rich Oligophosphoesters: Effective and Versatile Molecular Transporters for Drug and Probe Delivery. J Am Chem Soc 2016; 138:3510-7. [PMID: 26900771 DOI: 10.1021/jacs.5b13452] [Citation(s) in RCA: 88] [Impact Index Per Article: 11.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
Abstract
The design, synthesis, and biological evaluation of a new family of highly effective cell-penetrating molecular transporters, guanidinium-rich oligophosphoesters, are described. These unique transporters are synthesized in two steps, irrespective of oligomer length, by the organocatalytic ring-opening polymerization (OROP) of 5-membered cyclic phospholane monomers followed by oligomer deprotection. Varying the initiating alcohol results in a wide variety of cargo attachment strategies for releasable or nonreleasable transporter applications. Initiation of oligomerization with a fluorescent probe produces, upon deprotection, a transporter-probe conjugate that is shown to readily enter multiple cell lines in a dose-dependent manner. These new transporters are superior in cell uptake to previously studied guanidinium-rich oligocarbonates and oligoarginines, showing over 2-fold higher uptake than the former and 6-fold higher uptake than the latter. Initiation with a protected thiol gives, upon deprotection, thiol-terminated transporters which can be thiol-click conjugated to a variety of probes, drugs and other cargos as exemplified by the conjugation and delivery of the model probe fluorescein-maleimide and the medicinal agent paclitaxel (PTX) into cells. Of particular significance given that drug resistance is a major cause of chemotherapy failure, the PTX-transporter conjugate, designed to evade Pgp export and release free PTX after cell entry, shows efficacy against PTX-resistant ovarian cancer cells. Collectively this study introduces a new and highly effective class of guanidinium-rich cell-penetrating transporters and methodology for their single-step conjugation to drugs and probes, and demonstrates that the resulting drug/probe-conjugates readily enter cells, outperforming previously reported guanidinium-rich oligocarbonates and peptide transporters.
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Affiliation(s)
- Colin J McKinlay
- Department of Chemistry and ‡Department of Chemical and Systems Biology, Stanford University , Stanford, California 94305, United States
| | - Robert M Waymouth
- Department of Chemistry and ‡Department of Chemical and Systems Biology, Stanford University , Stanford, California 94305, United States
| | - Paul A Wender
- Department of Chemistry and ‡Department of Chemical and Systems Biology, Stanford University , Stanford, California 94305, United States
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20
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Blum AP, Kammeyer JK, Gianneschi NC. Activating Peptides for Cellular Uptake via Polymerization into High Density Brushes. Chem Sci 2015; 7:989-994. [PMID: 26925209 PMCID: PMC4763988 DOI: 10.1039/c5sc03417e] [Citation(s) in RCA: 54] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022] Open
Abstract
The utility of peptide therapeutics is thwarted by an inability to enter cells, preventing access to crucial intracellular targets. Herein, we describe a simple and potentially widely applicable solution involving the polymerization of a minimally modified amino acid sequence into a high density brush polymer. Specifically, non-cell penetrating peptides can be rendered competent for cell entry by first including a single Arg or Lys in their amino acid sequence, if one is not already present, along with a norbornenyl unit. This modified monomer is then polymerized by ring opening metathesis polymerization (ROMP). To demonstrate the utility of this strategy, a known therapeutic peptide, which does not penetrate cells on its own, was polymerized. The resulting polymer proficiently entered cells while maintaining its intracellular function. We anticipate that this methodology will find broad use in medicine, increasing or enabling the in vivo efficacy of promising peptide therapeutics.
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Affiliation(s)
- Angela P Blum
- Department of Chemistry & Biochemistry, University of California-San Diego, La Jolla, California 92093, United States
| | - Jacquelin K Kammeyer
- Department of Chemistry & Biochemistry, University of California-San Diego, La Jolla, California 92093, United States
| | - Nathan C Gianneschi
- Department of Chemistry & Biochemistry, University of California-San Diego, La Jolla, California 92093, United States
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21
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deRonde BM, Torres JA, Minter LM, Tew GN. Development of Guanidinium-Rich Protein Mimics for Efficient siRNA Delivery into Human T Cells. Biomacromolecules 2015; 16:3172-9. [PMID: 26324222 DOI: 10.1021/acs.biomac.5b00795] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]
Abstract
RNA interference is gaining attention as a means to explore new molecular pathways and for its potential as a therapeutic; however, its application in immortal and primary T cells is limited due to challenges with efficient delivery in these cell types. Herein, we report the development of guanidinium-rich protein transduction domain mimics (PTDMs) based on a ring-opening metathesis polymerization scaffold that delivers siRNA into Jurkat T cells and human peripheral blood mononuclear cells (hPBMCs). Homopolymer and block copolymer PTDMs with varying numbers of guanidinium moieties were designed and tested to assess the effect cationic charge content and the addition of a segregated, hydrophobic block had on siRNA internalization and delivery. Internalization of fluorescently labeled siRNA into Jurkat T cells illustrates that the optimal cationic charge content, 40 charges per polymer, leads to higher efficiencies, with block copolymers outperforming their homopolymer counterparts. PTDMs also outperformed commercial reagents commonly used for siRNA delivery applications. Select PTDM candidates were further screened to assess the role the PTDM structure has on the delivery of biologically active siRNA into primary cells. Specifically, siRNA to hNOTCH1 was delivered to hPBMCs enabling 50-80% knockdown efficiencies, with longer PTDMs showing improved protein reduction. By evaluating the PTDM design parameters for siRNA delivery, more efficient PTDMs were discovered that improved delivery and gene (NOTCH) knockdown in T cells. Given the robust delivery of siRNA by these novel PTDMs, their development should aid in the exploration of T cell molecular pathways leading eventually to new therapeutics.
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Affiliation(s)
- Brittany M deRonde
- Department of Polymer Science and Engineering, University of Massachusetts Amherst , Amherst, Massachusetts 01003, United States
| | - Joe A Torres
- Department of Veterinary and Animal Sciences, University of Massachusetts Amherst , Amherst, Massachusetts 01003, United States.,Molecular and Cellular Biology Program, University of Massachusetts Amherst , Amherst, Massachusetts 01003, United States
| | - Lisa M Minter
- Department of Veterinary and Animal Sciences, University of Massachusetts Amherst , Amherst, Massachusetts 01003, United States.,Molecular and Cellular Biology Program, University of Massachusetts Amherst , Amherst, Massachusetts 01003, United States
| | - Gregory N Tew
- Department of Polymer Science and Engineering, University of Massachusetts Amherst , Amherst, Massachusetts 01003, United States.,Department of Veterinary and Animal Sciences, University of Massachusetts Amherst , Amherst, Massachusetts 01003, United States.,Molecular and Cellular Biology Program, University of Massachusetts Amherst , Amherst, Massachusetts 01003, United States
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22
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Das A, Theato P. Activated Ester Containing Polymers: Opportunities and Challenges for the Design of Functional Macromolecules. Chem Rev 2015; 116:1434-95. [DOI: 10.1021/acs.chemrev.5b00291] [Citation(s) in RCA: 285] [Impact Index Per Article: 31.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Anindita Das
- Institute
for Technical and
Macromolecular Chemistry, University of Hamburg, D-20146 Hamburg, Germany
| | - Patrick Theato
- Institute
for Technical and
Macromolecular Chemistry, University of Hamburg, D-20146 Hamburg, Germany
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23
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deRonde BM, Tew GN. Development of protein mimics for intracellular delivery. Biopolymers 2015; 104:265-80. [PMID: 25858701 PMCID: PMC4516575 DOI: 10.1002/bip.22658] [Citation(s) in RCA: 37] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/19/2014] [Revised: 03/24/2015] [Accepted: 03/30/2015] [Indexed: 12/19/2022]
Abstract
Designing delivery agents for therapeutics is an ongoing challenge. As treatments and desired cargoes become more complex, the need for improved delivery vehicles becomes critical. Excellent delivery vehicles must ensure the stability of the cargo, maintain the cargo's solubility, and promote efficient delivery and release. In order to address these issues, many research groups have looked to nature for design inspiration. Proteins, such as HIV-1 trans-activator of transcription (TAT) and Antennapedia homeodomain protein, are capable of crossing cellular membranes. However, due to the complexities of their structures, they are synthetically challenging to reproduce in the laboratory setting. Being able to incorporate the key features of these proteins that enable cell entry into simpler scaffolds opens up a wide range of opportunities for the development of new delivery reagents with improved performance. This review charts the development of protein mimics based on cell-penetrating peptides (CPPs) and how structure-activity relationships (SARs) with these molecules and their protein counterparts ultimately led to the use of polymeric scaffolds. These scaffolds deviate from the normal peptide backbone, allowing for simpler, synthetic procedures to make carriers and tune chemical compositions for application specific needs. Successful design of polymeric protein mimics would allow researchers to further understand the key features in proteins and peptides necessary for efficient delivery and to design the next generation of more efficient delivery reagents.
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Affiliation(s)
- Brittany M deRonde
- Department of Polymer Science and Engineering, University of Massachusetts Amherst, Amherst, MA, 01003
| | - Gregory N Tew
- Department of Polymer Science and Engineering, University of Massachusetts Amherst, Amherst, MA, 01003
- Department of Veterinary and Animal Sciences, University of Massachusetts Amherst, Amherst, MA, 01003
- Molecular and Cellular Biology Program, University of Massachusetts Amherst, Amherst, MA, 01003
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24
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Ho LC, Wu WC, Chang CY, Hsieh HH, Lee CH, Chang HT. Aptamer-conjugated polymeric nanoparticles for the detection of cancer cells through "turn-on" retro-self-quenched fluorescence. Anal Chem 2015; 87:4925-32. [PMID: 25853548 DOI: 10.1021/acs.analchem.5b00569] [Citation(s) in RCA: 32] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/01/2023]
Abstract
We have developed a simple, sensitive, and rapid fluorescence assay for the detection of cancer cells, based on "turn-on" retro-self-quenched fluorescence inside the cells. 1,3-Phenylenediamine resin (DAR) nanoparticles (NPs) containing rhodamine 6G (R6G) are conjugated with aptamer (apt) sgc8c to prepare sgc8c-R6GDAR NPs, while that containing rhodamine 101 (R101) are conjugated with TD05 for the preparation of TD05-R101DAR NPs. The sgc8c-R6GDAR and TD05-R101DAR NPs separately recognize CCRF-CEM and Ramos cells. The fluorescence intensities of the two apt-DAR NPs are both weak due to self-quenching, but they increase inside the cells as a result of release of the fluorophores from the apt-DAR NPs. The apt-DAR NPs' structure becomes less compact at low pH value, leading to the release of the fluorophores. The sgc8c-R6GDAR and TD05-R101DAR NPs allow detection of as low as 44 CCRF-CEM cells and 79 Ramos cells mL(-1), respectively, using a commercial reader within 10 min. Practicality of the two probes have been validated by the quantitation and identification of CCRF-CEM and Ramos cells spiked in blood samples through conventional fluorescence and flow cytometry analysis, with advantages of sensitivity, selectivity, and rapidity.
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Affiliation(s)
- Lin-Chen Ho
- †Department of Chemistry, National Taiwan University, 1, Section 4, Roosevelt Road, Taipei, Taiwan
| | - Wei-Cheng Wu
- ‡Nano Science and Technology Program, Taiwan International Graduate Program, Academia Sinica, Taipei, Taiwan and National Tsing-Hua University, Hsinchu, Taiwan
| | - Chang-Yu Chang
- §Jen-Teh Junior College of Medicine, Nursing and Management, Miaoli County, Taiwan.,∥Public Health Center of Zhunan Township, Miaoli County, Taiwan
| | - Hao-Hsuan Hsieh
- †Department of Chemistry, National Taiwan University, 1, Section 4, Roosevelt Road, Taipei, Taiwan
| | - Ching-Hsiao Lee
- §Jen-Teh Junior College of Medicine, Nursing and Management, Miaoli County, Taiwan
| | - Huan-Tsung Chang
- †Department of Chemistry, National Taiwan University, 1, Section 4, Roosevelt Road, Taipei, Taiwan
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25
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Wender PA, Huttner MA, Staveness D, Vargas JR, Xu AF. Guanidinium-Rich, Glycerol-Derived Oligocarbonates: A New Class of Cell-Penetrating Molecular Transporters That Complex, Deliver, and Release siRNA. Mol Pharm 2015; 12:742-50. [DOI: 10.1021/mp500581r] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]
Affiliation(s)
- Paul A. Wender
- Departments of Chemistry and Chemical and Systems Biology, Stanford University, Stanford, California 94305, United States
| | - Melanie A. Huttner
- Departments of Chemistry and Chemical and Systems Biology, Stanford University, Stanford, California 94305, United States
| | - Daryl Staveness
- Departments of Chemistry and Chemical and Systems Biology, Stanford University, Stanford, California 94305, United States
| | - Jessica R. Vargas
- Departments of Chemistry and Chemical and Systems Biology, Stanford University, Stanford, California 94305, United States
| | - Adele F. Xu
- Departments of Chemistry and Chemical and Systems Biology, Stanford University, Stanford, California 94305, United States
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26
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Blum AP, Kammeyer JK, Yin J, Crystal DT, Rush AM, Gilson MK, Gianneschi NC. Peptides displayed as high density brush polymers resist proteolysis and retain bioactivity. J Am Chem Soc 2014; 136:15422-37. [PMID: 25314576 PMCID: PMC4227725 DOI: 10.1021/ja5088216] [Citation(s) in RCA: 66] [Impact Index Per Article: 6.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
Abstract
We describe a strategy for rendering peptides resistant to proteolysis by formulating them as high-density brush polymers. The utility of this approach is demonstrated by polymerizing well-established cell-penetrating peptides (CPPs) and showing that the resulting polymers are not only resistant to proteolysis but also maintain their ability to enter cells. The scope of this design concept is explored by studying the proteolytic resistance of brush polymers composed of peptides that are substrates for either thrombin or a metalloprotease. Finally, we demonstrate that the proteolytic susceptibility of peptide brush polymers can be tuned by adjusting the density of the polymer brush and offer in silico models to rationalize this finding. We contend that this strategy offers a plausible method of preparing peptides for in vivo use, where rapid digestion by proteases has traditionally restricted their utility.
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Affiliation(s)
- Angela P Blum
- Department of Chemistry & Biochemistry, ‡Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California, San Diego , La Jolla, California 92093, United States
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27
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Nagarkar AA, Kilbinger AFM. End functional ROMP polymers via degradation of a ruthenium Fischer type carbene. Chem Sci 2014. [DOI: 10.1039/c4sc02242d] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022] Open
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28
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Ding M, Zeng X, He X, Li J, Tan H, Fu Q. Cell Internalizable and Intracellularly Degradable Cationic Polyurethane Micelles as a Potential Platform for Efficient Imaging and Drug Delivery. Biomacromolecules 2014; 15:2896-906. [DOI: 10.1021/bm500506v] [Citation(s) in RCA: 47] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Affiliation(s)
- Mingming Ding
- College of Polymer Science and Engineering,
State Key Laboratory of Polymer Materials Engineering, Sichuan University, Chengdu 610065, China
| | - Xin Zeng
- College of Polymer Science and Engineering,
State Key Laboratory of Polymer Materials Engineering, Sichuan University, Chengdu 610065, China
| | - Xueling He
- Laboratory Animal Center, Sichuan University, Chengdu 610041, China
| | - Jiehua Li
- College of Polymer Science and Engineering,
State Key Laboratory of Polymer Materials Engineering, Sichuan University, Chengdu 610065, China
| | - Hong Tan
- College of Polymer Science and Engineering,
State Key Laboratory of Polymer Materials Engineering, Sichuan University, Chengdu 610065, China
| | - Qiang Fu
- College of Polymer Science and Engineering,
State Key Laboratory of Polymer Materials Engineering, Sichuan University, Chengdu 610065, China
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29
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Thompson MP, Randolph LM, James CR, Davalos AN, Hahn ME, Gianneschi NC. Labelling Polymers and Micellar Nanoparticles via Initiation, Propagation and Termination with ROMP. Polym Chem 2014; 5:1954-1964. [PMID: 24855496 PMCID: PMC4023353 DOI: 10.1039/c3py01338c] [Citation(s) in RCA: 37] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Abstract
In this paper we compare and contrast three approaches for labelling polymers with functional groups via ring-opening metathesis polymerization (ROMP). We explored the incorporation of functionality via initiation, termination and propagation employing an array of novel initiators, termination agents and monomers. The goal was to allow the generation of selectively labelled and well-defined polymers that would in turn lead to the formation of labelled nanomaterials. Norbornene analogues, prepared as functionalized monomers for ROMP, included fluorescent dyes (rhodamine, fluorescein, EDANS, and coumarin), quenchers (DABCYL), conjugatable moieties (NHS esters, pentafluorophenyl esters), and protected amines. In addition, a set of symmetrical olefins for terminally labelling polymers, and for the generation of initiators in situ is described.
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Affiliation(s)
- Matthew P. Thompson
- Department of Chemistry & Biochemistry, University of California, San Diego, La Jolla, CA, U.S.A.. Fax: XX XXXX XXXX; Tel: XX XXXX XXXX
| | - Lyndsay M. Randolph
- Department of Chemistry & Biochemistry, University of California, San Diego, La Jolla, CA, U.S.A.. Fax: XX XXXX XXXX; Tel: XX XXXX XXXX
| | - Carrie R. James
- Department of Chemistry & Biochemistry, University of California, San Diego, La Jolla, CA, U.S.A.. Fax: XX XXXX XXXX; Tel: XX XXXX XXXX
| | - Ashley N. Davalos
- Department of Chemistry & Biochemistry, University of California, San Diego, La Jolla, CA, U.S.A.. Fax: XX XXXX XXXX; Tel: XX XXXX XXXX
| | - Michael E. Hahn
- Department of Chemistry & Biochemistry, University of California, San Diego, La Jolla, CA, U.S.A.. Fax: XX XXXX XXXX; Tel: XX XXXX XXXX
| | - Nathan C. Gianneschi
- Department of Chemistry & Biochemistry, University of California, San Diego, La Jolla, CA, U.S.A.. Fax: XX XXXX XXXX; Tel: XX XXXX XXXX
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30
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Sgolastra F, Minter LM, Osborne BA, Tew GN. Importance of Sequence Specific Hydrophobicity in Synthetic Protein Transduction Domain Mimics. Biomacromolecules 2014; 15:812-20. [DOI: 10.1021/bm401634r] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]
Affiliation(s)
- Federica Sgolastra
- Departments of †Polymer Science and Engineering and ‡Veterinary and
Animal Sciences, University of Massachusetts, Amherst, Massachusetts 01003, United States
| | - Lisa M. Minter
- Departments of †Polymer Science and Engineering and ‡Veterinary and
Animal Sciences, University of Massachusetts, Amherst, Massachusetts 01003, United States
| | - Barbara A. Osborne
- Departments of †Polymer Science and Engineering and ‡Veterinary and
Animal Sciences, University of Massachusetts, Amherst, Massachusetts 01003, United States
| | - Gregory N. Tew
- Departments of †Polymer Science and Engineering and ‡Veterinary and
Animal Sciences, University of Massachusetts, Amherst, Massachusetts 01003, United States
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31
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Bang EK, Ward S, Gasparini G, Sakai N, Matile S. Cell-penetrating poly(disulfide)s: focus on substrate-initiated co-polymerization. Polym Chem 2014. [DOI: 10.1039/c3py01570j] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
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32
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Stanzl EG, Trantow BM, Vargas JR, Wender PA. Fifteen years of cell-penetrating, guanidinium-rich molecular transporters: basic science, research tools, and clinical applications. Acc Chem Res 2013; 46:2944-54. [PMID: 23697862 DOI: 10.1021/ar4000554] [Citation(s) in RCA: 265] [Impact Index Per Article: 24.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
Abstract
All living systems require biochemical barriers. As a consequence, all drugs, imaging agents, and probes have targets that are either on, in, or inside of these barriers. Fifteen years ago, we initiated research directed at more fully understanding these barriers and at developing tools and strategies for breaching them that could be of use in basic research, imaging, diagnostics, and medicine. At the outset of this research and now to a lesser extent, the "rules" for drug design biased the selection of drug candidates mainly to those with an intermediate and narrow log P. At the same time, it was becoming increasingly apparent that Nature had long ago developed clever strategies to circumvent these "rules." In 1988, for example, independent reports documented the otherwise uncommon passage of a protein (HIV-Tat) across a membrane. A subsequent study implicated a highly basic domain in this protein (Tat49-57) in its cellular entry. This conspicuously contradictory behavior of a polar, highly charged peptide passing through a nonpolar membrane set the stage for learning how Nature had gotten around the current "rules" of transport. As elaborated in our studies and discussed in this Account, the key strategy used in Nature rests in part on the ability of a molecule to change its properties as a function of microenvironment; such molecules need to be polarity chameleons, polar in a polar milieu and relatively nonpolar in a nonpolar environment. Because this research originated in part with the protein Tat and its basic peptide domain, Tat49-57, the field focused heavily on peptides, even limiting its nomenclature to names such as "cell-penetrating peptides," "cell-permeating peptides," "protein transduction domains," and "membrane translocating peptides." Starting in 1997, through a systematic reverse engineering approach, we established that the ability of Tat49-57 to enter cells is not a function of its peptide backbone, but rather a function of the number and spatial array of its guanidinium groups. These function-oriented studies enabled us and others to design more effective peptidic agents and to think beyond the confines of peptidic systems to new and even more effective nonpeptidic agents. Because the function of passage across a cell membrane is not limited to or even best achieved with the peptide backbone, we referred to these agents by their shared function, "cell-penetrating molecular transporters." The scope of this molecular approach to breaching biochemical barriers has expanded remarkably in the past 15 years: enabling or enhancing the delivery of a wide range of cargos into cells and across other biochemical barriers, creating new tools for research, imaging, and diagnostics, and introducing new therapies into clinical trials.
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Affiliation(s)
- Erika Geihe Stanzl
- Departments of Chemistry and Chemical and Systems Biology, Stanford University, Stanford, California 94305, United States
| | - Brian M. Trantow
- Departments of Chemistry and Chemical and Systems Biology, Stanford University, Stanford, California 94305, United States
| | - Jessica R. Vargas
- Departments of Chemistry and Chemical and Systems Biology, Stanford University, Stanford, California 94305, United States
| | - Paul A. Wender
- Departments of Chemistry and Chemical and Systems Biology, Stanford University, Stanford, California 94305, United States
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Sgolastra F, deRonde BM, Sarapas JM, Som A, Tew GN. Designing mimics of membrane active proteins. Acc Chem Res 2013; 46:2977-87. [PMID: 24007507 DOI: 10.1021/ar400066v] [Citation(s) in RCA: 101] [Impact Index Per Article: 9.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/08/2023]
Abstract
As a semipermeable barrier that controls the flux of biomolecules in and out the cell, the plasma membrane is critical in cell function and survival. Many proteins interact with the plasma membrane and modulate its physiology. Within this large landscape of membrane-active molecules, researchers have focused significant attention on two specific classes of peptides, antimicrobial peptides (AMPs) and cell penetrating peptides (CPPs), because of their unique properties. In this Account, we describe our efforts over the last decade to build and understand synthetic mimics of antimicrobial peptides (SMAMPs). These endeavors represent one specific example of a much larger effort to understand how synthetic molecules interact with and manipulate the plasma membrane. Using both defined molecular weight oligomers and easier to produce, but heterogeneous, polymers, we have generated scaffolds with biological potency exceeding that of the natural analogues. One of these compounds has progressed through a phase II clinical trial for pan-staph infections. Modern biophysical assays have highlighted the interplay between the synthetic scaffold and lipid composition: a negative Gaussian curvature is required both for pore formation and for the initiation of endosome creation. Although work remains to better resolve the complexity of this interplay between lipids, other bilayer components, and the scaffolds, significant new insights have been discovered. These results point to the importance of considering the various aspects of permeation and how these are related to "pore formation". More recently, our efforts have expanded toward protein transduction domains, or mimics of cell penetrating peptides. Using a combination of unique molecular scaffolds and guanidinium-rich side chains, we have produced an array of polymers with robust membrane (and delivery) activity. In this new area, researchers are just beginning to understand the fundamental interactions between these new scaffolds and the plasma membrane. Negative Gaussian curvature is also important in these systems, but the detailed relationships between molecular structure, self-assembly with lipids, and translocation will require more investigation. It has become clear that the combination of molecular design, biophysical models, and biological evaluation provides a robust approach to the generation and study of novel proteinomimetics.
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Affiliation(s)
- Federica Sgolastra
- Department of Polymer Science and Engineering, University of Massachusetts, Amherst, Massachusetts 01003, United States
| | - Brittany M. deRonde
- Department of Polymer Science and Engineering, University of Massachusetts, Amherst, Massachusetts 01003, United States
| | - Joel M. Sarapas
- Department of Polymer Science and Engineering, University of Massachusetts, Amherst, Massachusetts 01003, United States
| | - Abhigyan Som
- Department of Polymer Science and Engineering, University of Massachusetts, Amherst, Massachusetts 01003, United States
| | - Gregory N. Tew
- Department of Polymer Science and Engineering, University of Massachusetts, Amherst, Massachusetts 01003, United States
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Tang H, Yin L, Kim KH, Cheng J. Helical Poly(arginine) Mimics with Superior Cell-Penetrating and Molecular Transporting Properties. Chem Sci 2013; 4:3839-3844. [PMID: 25400902 PMCID: PMC4232443 DOI: 10.1039/c3sc51328a] [Citation(s) in RCA: 119] [Impact Index Per Article: 10.8] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
Poly(arginine) mimics bearing long hydrophobic side chains adopt stable helical conformation and exhibit helix-related cell-penetrating properties. Elongating polypeptide backbone length and increasing side chain hydrophobicity further increase the helicities of poly(arginine) mimics. They show superior cell membrane permeability up to two orders of magnitude higher than that of HIV-TAT peptide and excellent DNA and siRNA delivery efficiencies in various mammalian cells.
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Affiliation(s)
| | | | - Kyung Hoon Kim
- Department of Materials Science and Engineering, University of Illinois at Urbana–Champaign, 1304 West Green Street, Urbana, IL, 61801, USA
| | - Jianjun Cheng
- Department of Materials Science and Engineering, University of Illinois at Urbana–Champaign, 1304 West Green Street, Urbana, IL, 61801, USA
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Zhang Z, Ali MM, Eckert MA, Kang DK, Chen YY, Sender LS, Fruman DA, Zhao W. A polyvalent aptamer system for targeted drug delivery. Biomaterials 2013; 34:9728-35. [PMID: 24044994 DOI: 10.1016/j.biomaterials.2013.08.079] [Citation(s) in RCA: 106] [Impact Index Per Article: 9.6] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/19/2013] [Accepted: 08/27/2013] [Indexed: 01/28/2023]
Abstract
Poor efficacy and off-target systemic toxicity are major problems associated with current chemotherapeutic approaches to treat cancer. We developed a new form of polyvalent therapeutics that is composed of multiple aptamer units synthesized by rolling circle amplification and physically intercalated chemotherapy agents (termed as "Poly-Aptamer-Drug"). Using a leukemia cell-binding aptamer and doxorubicin as a model system, we have successfully constructed Poly-Aptamer-Drug systems and demonstrated that the Poly-Aptamer-Drug is significantly more effective than its monovalent counterpart in targeting and killing leukemia cells due to enhanced binding affinity (≈ 40 fold greater) and cell internalization via multivalent effects. We anticipate that our Poly-Aptamer-Drug approach will yield new classes of tunable therapeutics that can be utilized to effectively target and treat cancers while minimizing the side effects of chemotherapy.
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Affiliation(s)
- Zhiqing Zhang
- State Key Laboratory of Heavy Oil Processing, College of Science, China University of Petroleum, Qingdao 266580, People's Republic of China; Department of Pharmaceutical Sciences, Sue and Bill Gross Stem Cell Research Center and Chao Family Comprehensive Cancer Center, University of California, Irvine, 845 Health Sciences Road, Irvine, CA 92697, USA; Department of Biomedical Engineering, and Edwards Lifesciences Center for Advanced Cardiovascular Technology, University of California, Irvine, 845 Health Sciences Road, Irvine, CA 92697, USA
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36
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Wender PA. Toward the Ideal Synthesis and Transformative Therapies: The Roles of Step Economy and Function Oriented Synthesis. Tetrahedron 2013; 69:7529-7550. [PMID: 23956471 PMCID: PMC3743450 DOI: 10.1016/j.tet.2013.06.004] [Citation(s) in RCA: 88] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
Affiliation(s)
- Paul A Wender
- Department of Chemistry, Department of Chemical and Systems Biology, Stanford University, Stanford CA 94305-5080 USA
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37
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Zhang Z, Li D, Xie R, Yang W. Insights into the Energy Levels of Semiconductor Nanocrystals by a Dopant Approach. Angew Chem Int Ed Engl 2013; 52:5052-5. [DOI: 10.1002/anie.201210080] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/18/2012] [Revised: 02/21/2013] [Indexed: 11/08/2022]
Affiliation(s)
- Zhuolei Zhang
- College of Chemistry, Jilin University, Changchun, 130012 (P.R. China)
| | - Dongze Li
- College of Chemistry, Jilin University, Changchun, 130012 (P.R. China)
| | - Renguo Xie
- College of Chemistry, Jilin University, Changchun, 130012 (P.R. China)
| | - Wensheng Yang
- College of Chemistry, Jilin University, Changchun, 130012 (P.R. China)
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38
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Insights into the Energy Levels of Semiconductor Nanocrystals by a Dopant Approach. Angew Chem Int Ed Engl 2013. [DOI: 10.1002/ange.201210080] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
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39
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Gooding M, Browne LP, Quinteiro FM, Selwood DL. siRNA delivery: from lipids to cell-penetrating peptides and their mimics. Chem Biol Drug Des 2013; 80:787-809. [PMID: 22974319 DOI: 10.1111/cbdd.12052] [Citation(s) in RCA: 71] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Abstract
To deliver siRNA for therapeutic use, several hurdles must be addressed. Metabolic degradation must be blocked, and the RNAi cellular machinery is located in the cytoplasm, while double-stranded siRNA is large, highly charged and impermeable to cell membranes. To date, the solutions to the delivery issues have mostly involved different forms of lipid particle encapsulation. Cell-penetrating peptides and their mimics or analogues offer a different approach and this is an emerging field with the first in vivo examples now reported. Recent reports point to lipid receptors being involved in the cellular uptake of both types of transporter. This review examines the delivery of siRNA with a focus on cell-penetrating peptides and their small molecule and oligomeric mimics. The current status of siRNA delivery methods in clinical trials is examined. It now seems that the goal of delivering siRNA therapeutically is achievable but will they form part of a sustainable healthcare portfolio for the future.
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Affiliation(s)
- Matt Gooding
- The Wolfson Institute for Biomedical Research, UCL, Gower Street, London WC1E 6BT, UK
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40
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Eggimann GA, Buschor S, Darbre T, Reymond JL. Convergent synthesis and cellular uptake of multivalent cell penetrating peptides derived from Tat, Antp, pVEC, TP10 and SAP. Org Biomol Chem 2013; 11:6717-33. [DOI: 10.1039/c3ob41023d] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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41
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Qin X, Xie W, Tian S, Cai J, Yuan H, Yu Z, Butterfoss GL, Khuong AC, Gross RA. Enzyme-triggered hydrogelation via self-assembly of alternating peptides. Chem Commun (Camb) 2013; 49:4839-41. [DOI: 10.1039/c3cc41794h] [Citation(s) in RCA: 47] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/30/2023]
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42
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Miki K, Inoue T, Ohe K. Metathesis Polymerization-Based Synthesis of Functionalized Polymers Aiming at Medicinal Application. J SYN ORG CHEM JPN 2013. [DOI: 10.5059/yukigoseikyokaishi.71.601] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
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43
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Schmidt NW, Lis M, Zhao K, Lai GH, Alexandrova AN, Tew GN, Wong GCL. Molecular basis for nanoscopic membrane curvature generation from quantum mechanical models and synthetic transporter sequences. J Am Chem Soc 2012; 134:19207-16. [PMID: 23061419 DOI: 10.1021/ja308459j] [Citation(s) in RCA: 58] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/17/2023]
Abstract
We investigate the physical origin of peptide-induced membrane curvature by contrasting differences between H-bonding interactions of prototypical cationic amino acids, arginine (Arg) and lysine (Lys), with phosphate groups of phospholipid heads using quantum mechanical (QM) calculations of a minimum model and test the results via synthetic oxaorbornene-based transporter sequences without the geometric constraints of polypeptide backbones. QM calculations suggest that although individual Lys can in principle coordinate two phosphates, they are not able to do so at small inter-Lys distances without drastic energetic penalties. In contrast, Arg can coordinate two phosphates down to less than 5 Å, where guanidinium groups can stack "face to face". In agreement with these observations, poly-Lys cannot generate the nanoscale positive curvature necessary for inducing negative Gaussian membrane curvature, in contrast to poly-Arg. Also consistent with QM calculations, polyguanidine-oxanorbornene homopolymers (PGONs) showed that curvature generation is exquisitely sensitive to the guanidinium group spacing when the phosphate groups are near close packing. Addition of phenyl or butyl hydrophobic groups into guanidine-oxanorbornene polymers increased the amount of induced saddle-splay membrane curvature and broadened the range of lipid compositions where saddle-splay curvature was induced. The enhancement of saddle-splay curvature generation and relaxation of lipid composition requirements via addition of hydrophobicity is consistent with membrane activity profiles. While PGON polymers displayed selective antimicrobial activity against prototypical (Gram positive and negative) bacteria, polymers with phenyl and butyl groups were also active against red blood cells. Our results suggest that it is possible to achieve deterministic molecular design of pore-forming peptides.
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Affiliation(s)
- Nathan W Schmidt
- Department of Bioengineering, University of California, Los Angeles, California 90095, USA
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44
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Saha A, De S, Stuparu MC, Khan A. Facile and General Preparation of Multifunctional Main-Chain Cationic Polymers through Application of Robust, Efficient, and Orthogonal Click Chemistries. J Am Chem Soc 2012; 134:17291-7. [DOI: 10.1021/ja307788u] [Citation(s) in RCA: 75] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
Affiliation(s)
- Animesh Saha
- Department of Materials, ETH-Zürich, CH-8093 Zürich, Switzerland
| | - Swati De
- Department of Materials, ETH-Zürich, CH-8093 Zürich, Switzerland
| | - Mihaiela C. Stuparu
- Institute of Organic Chemistry, University of Zürich, CH-8057 Zürich,
Switzerland
| | - Anzar Khan
- Department of Materials, ETH-Zürich, CH-8093 Zürich, Switzerland
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45
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A Combinatorial Library of Bi-functional Polymeric Vectors for siRNA Delivery In Vitro. Pharm Res 2012; 30:362-76. [DOI: 10.1007/s11095-012-0876-4] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/14/2012] [Accepted: 08/23/2012] [Indexed: 01/28/2023]
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46
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Edward JA, Kiesewetter MK, Kim H, Flanagan JC, Hedrick JL, Waymouth RM. Organocatalytic Synthesis of Quinine-Functionalized Poly(carbonate)s. Biomacromolecules 2012; 13:2483-9. [DOI: 10.1021/bm300718b] [Citation(s) in RCA: 33] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Affiliation(s)
| | | | | | | | - James L. Hedrick
- IBM Almaden Research Center, 650 Harry Road, California 95120, United States
| | - Robert M. Waymouth
- Department of Chemistry, Stanford University, Stanford, California
94305, United States
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47
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Nagarkar AA, Crochet A, Fromm KM, Kilbinger AFM. Efficient Amine End-Functionalization of Living Ring-Opening Metathesis Polymers. Macromolecules 2012. [DOI: 10.1021/ma300602p] [Citation(s) in RCA: 50] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Amit A. Nagarkar
- Department of Chemistry, University of Fribourg, Chemin du Musée 9, CH-1700 Fribourg,
Switzerland
| | - Aurelien Crochet
- Department of Chemistry, University of Fribourg, Chemin du Musée 9, CH-1700 Fribourg,
Switzerland
| | - Katharina M. Fromm
- Department of Chemistry, University of Fribourg, Chemin du Musée 9, CH-1700 Fribourg,
Switzerland
| | - Andreas F. M. Kilbinger
- Department of Chemistry, University of Fribourg, Chemin du Musée 9, CH-1700 Fribourg,
Switzerland
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48
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Petkau-Milroy K, Sonntag MH, van Onzen AHAM, Brunsveld L. Supramolecular Polymers as Dynamic Multicomponent Cellular Uptake Carriers. J Am Chem Soc 2012; 134:8086-9. [DOI: 10.1021/ja3029075] [Citation(s) in RCA: 38] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Katja Petkau-Milroy
- Laboratory
of Chemical Biology, Department of Biomedical
Engineering, Eindhoven University of Technology, Den Dolech 2, 5612 AZ Eindhoven, The Netherlands
| | - Michael H. Sonntag
- Laboratory
of Chemical Biology, Department of Biomedical
Engineering, Eindhoven University of Technology, Den Dolech 2, 5612 AZ Eindhoven, The Netherlands
| | - Arthur H. A. M. van Onzen
- Laboratory
of Chemical Biology, Department of Biomedical
Engineering, Eindhoven University of Technology, Den Dolech 2, 5612 AZ Eindhoven, The Netherlands
| | - Luc Brunsveld
- Laboratory
of Chemical Biology, Department of Biomedical
Engineering, Eindhoven University of Technology, Den Dolech 2, 5612 AZ Eindhoven, The Netherlands
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49
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Wender PA, Cooley CB, Geihe EI. Beyond Cell Penetrating Peptides: Designed Molecular Transporters. DRUG DISCOVERY TODAY. TECHNOLOGIES 2012; 9:e1-e70. [PMID: 22712022 DOI: 10.1016/j.ddtec.2011.07.004] [Citation(s) in RCA: 40] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
Abstract
Inspired originally by peptides that traverse biological barriers, research on molecular transporters has since identified the key structural requirements that govern cellular entry, leading to new, significantly more effective and more readily available agents. These new drug delivery systems enable or enhance cellular and tissue uptake, can be targeted, and provide numerous additional advantages of significance in imaging, diagnostics and therapy.
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Affiliation(s)
- Paul A Wender
- Departments of Chemistry and Chemical and Systems Biology, Stanford University, Stanford, CA
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50
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Capule CC, Brown C, Olsen JS, Dewhurst S, Yang J. Oligovalent amyloid-binding agents reduce SEVI-mediated enhancement of HIV-1 infection. J Am Chem Soc 2012; 134:905-8. [PMID: 22239120 PMCID: PMC3262105 DOI: 10.1021/ja210931b] [Citation(s) in RCA: 31] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
Abstract
This paper evaluates the use of oligovalent amyloid-binding molecules as potential agents that can reduce the enhancement of human immunodeficiency virus-1 (HIV-1) infection in cells by semen-derived enhancer of virus infection (SEVI) fibrils. These naturally occurring amyloid fibrils found in semen have been implicated as mediators that can facilitate the attachment and internalization of HIV-1 virions to immune cells. Molecules that are capable of reducing the role of SEVI in HIV-1 infection may, therefore, represent a novel strategy to reduce the rate of sexual transmission of HIV-1 in humans. Here, we evaluated a set of synthetic, oligovalent derivatives of benzothiazole aniline (BTA, a known amyloid-binding molecule) for their capability to bind cooperatively to aggregated amyloid peptides and to neutralize the effects of SEVI in HIV-1 infection. We demonstrate that these BTA derivatives exhibit a general trend of increased binding to aggregated amyloids as a function of increasing valence number of the oligomer. Importantly, we find that oligomers of BTA show improved capability to reduce SEVI-mediated infection of HIV-1 in cells compared to a BTA monomer, with the pentamer exhibiting a 65-fold improvement in efficacy compared to a previously reported monomeric BTA derivative. These results, thus, support the use of amyloid-targeting molecules as potential supplements for microbicides to curb the spread of HIV-1 through sexual contact.
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Affiliation(s)
- Christina C. Capule
- Department of Chemistry and Biochemistry, University of California San Diego, La Jolla, CA 92093-0358
| | - Caitlin Brown
- Department of Microbiology and Immunology, University of Rochester, Rochester, NY 14642
| | - Joanna S. Olsen
- Department of Microbiology and Immunology, University of Rochester, Rochester, NY 14642
| | - Stephen Dewhurst
- Department of Microbiology and Immunology, University of Rochester, Rochester, NY 14642
| | - Jerry Yang
- Department of Chemistry and Biochemistry, University of California San Diego, La Jolla, CA 92093-0358
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