1
|
Díaz-Casado L, Villacampa A, Corzana F, Jiménez-Barbero J, Gómez AM, Santana AG, Asensio JL. Illuminating a Solvent-Dependent Hierarchy for Aromatic CH/π Complexes with Dynamic Covalent Glyco-Balances. JACS AU 2024; 4:476-490. [PMID: 38425929 PMCID: PMC10900200 DOI: 10.1021/jacsau.3c00592] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/03/2023] [Revised: 12/11/2023] [Accepted: 12/11/2023] [Indexed: 03/02/2024]
Abstract
CH/π interactions are prevalent among aromatic complexes and represent invaluable tools for stabilizing well-defined molecular architectures. Their energy contributions are exceptionally sensitive to various structural and environmental factors, resulting in a context-dependent nature that has led to conflicting findings in the scientific literature. Consequently, a universally accepted hierarchy for aromatic CH/π interactions has remained elusive. Herein, we present a comprehensive experimental investigation of aromatic CH/π complexes, employing a novel approach that involves isotopically labeled glyco-balances generated in situ. This innovative strategy not only allows us to uncover thermodynamic insights but also delves into the often less-accessible domain of kinetic information. Our analyses have yielded more than 180 new free energy values while considering key factors such as solvent properties, the interaction geometry, and the presence and nature of accompanying counterions. Remarkably, the obtained results challenge conventional wisdom regarding the stability order of common aromatic complexes. While it was believed that cationic CH/π interactions held the highest strength, followed by polarized CH/π, nonpolarized CH/π, and finally anionic CH/π interactions, our study reveals that this hierarchy can be subverted depending on the environment. Indeed, the performance of polarized CH/π interactions can match or even outcompete that of cationic CH/π interactions making them a more reliable stabilization strategy across the entire spectrum of solvent polarity. Overall, our results provide valuable guidelines for the selection of optimal interacting partners in every chemical environment, allowing the design of tailored aromatic complexes with applications in supramolecular chemistry, organocatalysis, and/or material sciences.
Collapse
Affiliation(s)
- Laura Díaz-Casado
- Departamento
de Química Bio-Orgánica, Instituto de Química
Orgánica General (IQOG-CSIC), Consejo
Superior de Investigaciones Científicas (CSIC), 28006 Madrid, Spain
| | - Alejandro Villacampa
- Departamento
de Química Bio-Orgánica, Instituto de Química
Orgánica General (IQOG-CSIC), Consejo
Superior de Investigaciones Científicas (CSIC), 28006 Madrid, Spain
| | - Francisco Corzana
- Departamento
de Química, Centro de Investigación en Síntesis
Química, Universidad de La Rioja, 26006 Logroño, Spain
| | - Jesús Jiménez-Barbero
- Basque
Researchand Technology Alliance (BRTA), CIC bioGUNE, 48170 Derio, Spain
- Basque
Foundation for Science, Ikerbasque, 48009 Bilbao, Spain
- Centro
de Investigación Biomédica En Red de Enfermedades Respiratorias, 28029 Madrid, Spain
| | - Ana M. Gómez
- Departamento
de Química Bio-Orgánica, Instituto de Química
Orgánica General (IQOG-CSIC), Consejo
Superior de Investigaciones Científicas (CSIC), 28006 Madrid, Spain
| | - Andrés G. Santana
- Department
of Chemistry of Natural Products and Bioactive Synthetics, Instituto de Productos Naturales y Agrobiología
(IPNA-CSIC), San Cristóbal
de La Laguna, Santa Cruz de Tenerife 38206, Spain
| | - Juan Luis Asensio
- Departamento
de Química Bio-Orgánica, Instituto de Química
Orgánica General (IQOG-CSIC), Consejo
Superior de Investigaciones Científicas (CSIC), 28006 Madrid, Spain
| |
Collapse
|
2
|
Fukunaga TM, Onaka Y, Kato T, Ikemoto K, Isobe H. Stoichiometry validation of supramolecular complexes with a hydrocarbon cage host by van 't Hoff analyses. Nat Commun 2023; 14:8246. [PMID: 38129419 PMCID: PMC10739680 DOI: 10.1038/s41467-023-43979-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/22/2023] [Accepted: 11/27/2023] [Indexed: 12/23/2023] Open
Abstract
Defining chemical processes with equations is the first important step in characterizing equilibria for the assembly of supramolecular complexes, and the stoichiometry of the assembled components must be defined to generate the equation. Recently, this subject has attracted renewed interest, and statistical and/or information-theoretic measures were introduced to examine the validities of the equilibrium models used during curve fitting analyses of titration. The present study shows that these measures may not always be appropriate for credibility examinations and that further reformation of the protocols used to determine the overall stoichiometry is necessary. Hydrocarbon cage hosts and their chloroform complexes formed via weak CH-π hydrogen bonds were studied, which allowed us to introduce van 't Hoff analyses for effective validation of the stoichiometries of supramolecular complexes. This study shows that the stoichiometries of supramolecular complexes should be carefully examined by adopting multiple measures with different origins.
Collapse
Affiliation(s)
- Toshiya M Fukunaga
- Department of Chemistry, The University of Tokyo, Hongo 7-3-1, Bunkyo-ku, Tokyo, 113-0033, Japan
| | - Yuzuka Onaka
- Department of Chemistry, The University of Tokyo, Hongo 7-3-1, Bunkyo-ku, Tokyo, 113-0033, Japan
| | - Takahide Kato
- Department of Chemistry, The University of Tokyo, Hongo 7-3-1, Bunkyo-ku, Tokyo, 113-0033, Japan
| | - Koki Ikemoto
- Department of Chemistry, The University of Tokyo, Hongo 7-3-1, Bunkyo-ku, Tokyo, 113-0033, Japan.
| | - Hiroyuki Isobe
- Department of Chemistry, The University of Tokyo, Hongo 7-3-1, Bunkyo-ku, Tokyo, 113-0033, Japan.
| |
Collapse
|
3
|
Emenike BU, Farshadmand A, Zeller M, Roman AJ, Sevimler A, Shinn DW. Electrostatic CH-π Interactions Can Override Fluorine Gauche Effects To Exert Conformational Control. Chemistry 2023; 29:e202203139. [PMID: 36286329 DOI: 10.1002/chem.202203139] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/07/2022] [Indexed: 11/07/2022]
Abstract
Fluorine gauche effects are conformational properties of 2-fluoroethanes often applied in modern molecular designs. However, the physical origins of fluorine gauche effects are not well understood, with the consensus favoring the established hyperconjugation theory over an emerging electrostatic model. Using a series of model systems, we show that a shift to fluorine gauche effects can be influenced by intramolecular CH⋅⋅⋅π aromatic interactions, a through-space event. Modulating the π-ring (forming the aromatic interaction) with substituent groups resulted in a linear Hammett relationship, thus indicating that the CH⋅⋅⋅π interaction has electrostatic features. For instance, attaching a nitro group (an electron-withdrawing substituent) to the π-ring weakened the CH⋅⋅⋅π interaction and led to a gauche preference, whereas an anti conformer is preferred with amine as substituent. The experimental results performed by using proton NMR spectroscopy are corroborated by gas-phase DFT calculations and solid-state X-ray crystallography.
Collapse
Affiliation(s)
- Bright U Emenike
- Department of Chemistry & Physics, State University of New York, Old Westbury, 223 Store Hill Road, Old Westbury, NY 11568, USA
| | - Amiel Farshadmand
- Department of Chemistry & Physics, State University of New York, Old Westbury, 223 Store Hill Road, Old Westbury, NY 11568, USA
| | - Matthias Zeller
- Department of Chemistry, Purdue University, West Lafayette, IN 47907-2084, USA
| | - Armando J Roman
- Department of Chemistry & Physics, State University of New York, Old Westbury, 223 Store Hill Road, Old Westbury, NY 11568, USA
| | - Arzu Sevimler
- Department of Chemistry & Physics, State University of New York, Old Westbury, 223 Store Hill Road, Old Westbury, NY 11568, USA
| | - David W Shinn
- Department of Mathematics and Science, United States Merchant Marine Academy, 300 Steamboat Road, Kings Point, NY 11024, USA
| |
Collapse
|
4
|
Control of Fluorescence of Organic Dyes in the Solid-State by Supramolecular Interactions. J Fluoresc 2022; 33:799-847. [PMID: 36576681 DOI: 10.1007/s10895-022-03056-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/22/2022] [Accepted: 10/21/2022] [Indexed: 12/29/2022]
Abstract
Fluorescent organic dyes play an essential role in the creation of new "smart" materials. Fragments and functional groups capable of free rotation around single bonds can significantly change the fluorescent organic dye's electronic structure under analyte effects, phase state transitions, or changes in temperature, pressure, and media polarity. Dependencies between steric and electronic structures become highly important in transition from a solution to a solid-state. Such transitions are accompanied by a significant increase in the dye molecular structure's rigidity due to supramolecular associates' formation such as H-bonding, π···π and dipole-dipole interactions. Among those supramolecular effects, H-bonding interactions, first of all, lead to significant molecular packing changes between loose or rigid structures, thus affecting the fluorescent dye's electronic states' energy and configuration, its fluorescent signal's position and intensity. All the functional groups and heteroatoms that are met in the organic dyes seem to be involved in the control of fluorescence via H-bonding: C-H···N, C-H···π, S = O···H-C, P = O···H, C-H···O, NH···N, C - H···C, C - H···Se, N-H···O, C - H···F, C-F···H. Effects of molecular packing of fluorescent organic dyes are successfully used in developing mechano-, piezo-, thermo- fluorochromes materials for their applications in the optical recording of information, sensors, security items, memory elements, organic light-emitting diodes (OLEDs) technologies.
Collapse
|
5
|
(9R,9aS,12aR,13S)-9,13-Diphenyl-9,9a,12a,13-tetrahydro-9,13-methanotriphenyleno[2,3-c]furan-10,12,14-trione. MOLBANK 2022. [DOI: 10.3390/m1435] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022] Open
Abstract
X-ray crystallography was used to characterise the title compound for the first time, and the 1H NMR, 13C NMR and IR spectroscopic data from earlier reports were also updated.
Collapse
|
6
|
König HF, Hausmann H, Schreiner PR. Assessing the Experimental Hydrogen Bonding Energy of the Cyclic Water Dimer Transition State with a Cyclooctatetraene-Based Molecular Balance. J Am Chem Soc 2022; 144:16965-16973. [PMID: 35998326 DOI: 10.1021/jacs.2c06141] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
We have conducted an experimental and computational study of cyclooctatetraene-1,4/1,6-dimethanol (1,4 and 1,6) as a molecular balance with the goal in mind to determine the otherwise inaccessible hydrogen bonding energy (HBE) of the cyclic water dimer, which constitutes a transition state. The 1,4/1,6 folding equilibrium is governed by an intramolecular hydrogen bond in the folded 1,6-isomer, in which the OH groups adopt a cyclic planar geometry, akin to the structure of the cyclic water dimer transition state. We characterized hydrogen bonding in 1,6 and reference complexes utilizing SAPT2 + (3)δMP2/aug-cc-pVTZ and selected quantum theory of atoms in molecule descriptors at M06-2XD3(0)/ma-def2-TZVPP. Additionally, we computed HBEs at the DLPNO-CCSD(T)/aug-cc-pVQZ level of theory. We find that hydrogen bonding in 1,6 is very similar to the interaction in the Ci symmetric cyclic water dimer TS, both in magnitude and character. We experimentally determined the Gibbs free energy of the folding process (ΔGeq) in a variety of organic solvents via nuclear magnetic resonance spectroscopy measurements at room temperature. By combining experimentally obtained ΔGeq values with corrections derived from accurate computational methods, we provide estimates for the HBE of cyclic water dimers and the cyclic water dimer TS, as the most stable cyclic water dimer.
Collapse
Affiliation(s)
- Henrik Ferdinand König
- Institute of Organic Chemistry, Justus Liebig University, Heinrich-Buff-Ring 17, 35392 Giessen, Germany
| | - Heike Hausmann
- Institute of Organic Chemistry, Justus Liebig University, Heinrich-Buff-Ring 17, 35392 Giessen, Germany
| | - Peter R Schreiner
- Institute of Organic Chemistry, Justus Liebig University, Heinrich-Buff-Ring 17, 35392 Giessen, Germany
| |
Collapse
|
7
|
Wilming FM, Becker J, Schreiner PR. Quantifying Solvophobic Effects in Organic Solvents Using a Hydrocarbon Molecular Balance. J Org Chem 2021; 87:1874-1878. [PMID: 34758618 DOI: 10.1021/acs.joc.1c01813] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
We evaluate the use of the cohesive energy density (ced) as a quantitative descriptor for solvophobic effects in organic solvents by measuring ΔGZ/E of the rigid Z- and E-2,2'-diethynyl-9,9'-bifluorenylidene. In line with previously employed balances, solvent-dependent changes in ΔGZ/E are predominantly induced by solvophobic effects, leading to a strong correlation with the solvent's ced. We re-emphasize the role of ceds as quantitative descriptors of solvophobic effects of organic solvents. Our experimental findings are well supported by B3LYP-D3/def2TZVP computations.
Collapse
Affiliation(s)
- Finn M Wilming
- Institute of Organic Chemistry, Justus Liebig University, Heinrich-Buff-Ring 17, 35392 Giessen, Germany.,Center for Materials Research (ZfM), Justus Liebig University, Heinrich-Buff-Ring 16, 35392 Giessen, Germany
| | - Jonathan Becker
- Institute of Inorganic and Analytical Chemistry, Justus Liebig University, Heinrich-Buff-Ring 17, 35392 Giessen, Germany
| | - Peter R Schreiner
- Institute of Organic Chemistry, Justus Liebig University, Heinrich-Buff-Ring 17, 35392 Giessen, Germany.,Center for Materials Research (ZfM), Justus Liebig University, Heinrich-Buff-Ring 16, 35392 Giessen, Germany
| |
Collapse
|
8
|
Zhai L, Nara M, Otani Y, Ohwada T. Unexpectedly rigid short peptide foldamers in which NH-π and CH-π interactions are preserved in solution. Chem Commun (Camb) 2021; 57:8344-8347. [PMID: 34328149 DOI: 10.1039/d1cc02998c] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
NH-π and CH-π interactions, due to their weak character, are not easily identified in solution. We report a group of isolable short peptides with stable folds, in which NH-π and CH-π main chain-side chain interactions can be detected in solution by means of NMR and ATR-IR spectroscopy.
Collapse
Affiliation(s)
- Luhan Zhai
- Laboratory of Organic and Medicinal Chemistry, Graduate School of Pharmaceutical Sciences, University of Tokyo, 7-3-1 Hongo, Bunkyo-ko, Tokyo, 113-0033, Japan.
| | | | | | | |
Collapse
|
9
|
Li P, Vik EC, Shimizu KD. N-Arylimide Molecular Balances: A Comprehensive Platform for Studying Aromatic Interactions in Solution. Acc Chem Res 2020; 53:2705-2714. [PMID: 33152232 DOI: 10.1021/acs.accounts.0c00519] [Citation(s) in RCA: 21] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/08/2023]
Abstract
Noncovalent interactions of aromatic surfaces play a key role in many biological processes and in determining the properties and utility of synthetic materials, sensors, and catalysts. However, the study of aromatic interactions has been challenging because these interactions are usually very weak and their trends are modulated by many factors such as structural, electronic, steric, and solvent effects. Recently, N-arylimide molecular balances have emerged as highly versatile and effective platforms for studying aromatic interactions in solution. These molecular balances can accurately measure weak noncovalent interactions in solution via their influence on the folded-unfolded conformational equilibrium. The structure (i.e., size, shape, π-conjugation, and substitution) and nature (i.e., element, charge, and polarity) of the π-surfaces and interacting groups can be readily varied, enabling the study of a wide range of aromatic interactions. These include aromatic stacking, heterocyclic aromatic stacking, and alkyl-π, chalcogen-π, silver-π, halogen-π, substituent-π, and solvent-π interactions. The ability to measure a diverse array of aromatic interactions within a single model system provides a unique perspective and insights as the interaction energies, stability trends, and solvent effects for different types of interactions can be directly compared. Some broad conclusions that have emerged from this comprehensive analysis include: (1) The strongest aromatic interactions involve groups with positive charges such as pyridinium and metal ions which interact with the electrostatically negative π-face of the aromatic surface via cation-π or metal-π interactions. Attractive electrostatic interactions can also form between aromatic surfaces and groups with partial positive charges. (2) Electrostatic interactions involving aromatic surfaces can be switched from repulsive to attractive using electron-withdrawing substituents or heterocycles. These electrostatic trends appear to span many types of aromatic interactions involving a polar group interacting with a π-surface such as halogen-π, chalcogen-π, and carbonyl-π. (3) Nonpolar groups form weak but measurable stabilizing interactions with aromatic surfaces in organic solvents due to favorable dispersion and/or solvophobic effects. A good predictor of the interaction strength is provided by the change in solvent-accessible surface area. (4) Solvent effects modulate the aromatic interactions in the forms of solvophobic effects and competitive solvation, which can be modeled using solvent cohesion density and specific solvent-solute interactions.
Collapse
Affiliation(s)
- Ping Li
- Chemical Sciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, United States
| | - Erik C. Vik
- Vertex Pharmaceuticals, 50 Northern Avenue, Boston, Massachusetts 02210, United States
| | - Ken D. Shimizu
- Department of Chemistry and Biochemistry, University of South Carolina, Columbia, South Carolina 29208, United States
| |
Collapse
|
10
|
Yamada M, Narita H, Maeda Y. A Fullerene‐Based Molecular Torsion Balance for Investigating Noncovalent Interactions at the C
60
Surface. Angew Chem Int Ed Engl 2020. [DOI: 10.1002/ange.202005888] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]
Affiliation(s)
- Michio Yamada
- Department of Chemistry Tokyo Gakugei University Nukuikitamachi 4-1-1 Koganei Tokyo 184-8501 Japan
| | - Haruna Narita
- Department of Chemistry Tokyo Gakugei University Nukuikitamachi 4-1-1 Koganei Tokyo 184-8501 Japan
| | - Yutaka Maeda
- Department of Chemistry Tokyo Gakugei University Nukuikitamachi 4-1-1 Koganei Tokyo 184-8501 Japan
| |
Collapse
|
11
|
Yamada M, Narita H, Maeda Y. A Fullerene-Based Molecular Torsion Balance for Investigating Noncovalent Interactions at the C 60 Surface. Angew Chem Int Ed Engl 2020; 59:16133-16140. [PMID: 32458522 DOI: 10.1002/anie.202005888] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/23/2020] [Indexed: 12/12/2022]
Abstract
To investigate the nature and strength of noncovalent interactions at the fullerene surface, molecular torsion balances consisting of C60 and organic moieties connected through a biphenyl linkage were synthesized. NMR and computational studies show that the unimolecular system remains in equilibrium between well-defined folded and unfolded conformers owing to restricted rotation around the biphenyl C-C bond. The energy differences between the two conformers depend on the substituents and is ascribed to differences in the intramolecular noncovalent interactions between the organic moieties and the fullerene surface. Fullerenes favor interacting with the π-faces of benzenes bearing electron-donating substituents. The correlation between the folding free energies and corresponding Hammett constants of the substituents in the arene-containing torsion balances reflects the contributions of the electrostatic interactions and dispersion force to face-to-face arene-fullerene interactions.
Collapse
Affiliation(s)
- Michio Yamada
- Department of Chemistry, Tokyo Gakugei University, Nukuikitamachi 4-1-1, Koganei, Tokyo, 184-8501, Japan
| | - Haruna Narita
- Department of Chemistry, Tokyo Gakugei University, Nukuikitamachi 4-1-1, Koganei, Tokyo, 184-8501, Japan
| | - Yutaka Maeda
- Department of Chemistry, Tokyo Gakugei University, Nukuikitamachi 4-1-1, Koganei, Tokyo, 184-8501, Japan
| |
Collapse
|
12
|
Vik EC, Li P, Maier JM, Madukwe DO, Rassolov VA, Pellechia PJ, Masson E, Shimizu KD. Large transition state stabilization from a weak hydrogen bond. Chem Sci 2020; 11:7487-7494. [PMID: 34123031 PMCID: PMC8159443 DOI: 10.1039/d0sc02806a] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022] Open
Abstract
A series of molecular rotors was designed to study and measure the rate accelerating effects of an intramolecular hydrogen bond. The rotors form a weak neutral O–H⋯O
Created by potrace 1.16, written by Peter Selinger 2001-2019
]]>
C hydrogen bond in the planar transition state (TS) of the bond rotation process. The rotational barrier of the hydrogen bonding rotors was dramatically lower (9.9 kcal mol−1) than control rotors which could not form hydrogen bonds. The magnitude of the stabilization was significantly larger than predicted based on the independently measured strength of a similar O–H⋯OC hydrogen bond (1.5 kcal mol−1). The origins of the large transition state stabilization were studied via experimental substituent effect and computational perturbation analyses. Energy decomposition analysis of the hydrogen bonding interaction revealed a significant reduction in the repulsive component of the hydrogen bonding interaction. The rigid framework of the molecular rotors positions and preorganizes the interacting groups in the transition state. This study demonstrates that with proper design a single hydrogen bond can lead to a TS stabilization that is greater than the intrinsic interaction energy, which has applications in catalyst design and in the study of enzyme mechanisms. A series of molecular rotors was designed to study and measure the rate accelerating effects of an intramolecular hydrogen bond.![]()
Collapse
Affiliation(s)
- Erik C Vik
- Department of Chemistry and Biochemistry, University of South Carolina Columbia SC 29208 USA
| | - Ping Li
- Department of Chemistry and Biochemistry, University of South Carolina Columbia SC 29208 USA
| | - Josef M Maier
- Department of Chemistry and Biochemistry, University of South Carolina Columbia SC 29208 USA
| | - Daniel O Madukwe
- Department of Chemistry and Biochemistry, University of South Carolina Columbia SC 29208 USA
| | - Vitaly A Rassolov
- Department of Chemistry and Biochemistry, University of South Carolina Columbia SC 29208 USA
| | - Perry J Pellechia
- Department of Chemistry and Biochemistry, University of South Carolina Columbia SC 29208 USA
| | - Eric Masson
- Department of Chemistry and Biochemistry, Ohio University Athens OH 45701 USA
| | - Ken D Shimizu
- Department of Chemistry and Biochemistry, University of South Carolina Columbia SC 29208 USA
| |
Collapse
|
13
|
Kwamen ACN, Schlottmann M, Van Craen D, Isaak E, Baums J, Shen L, Massomi A, Räuber C, Joseph BP, Raabe G, Göb C, Oppel IM, Puttreddy R, Ward JS, Rissanen K, Fröhlich R, Albrecht M. Shedding Light on the Interactions of Hydrocarbon Ester Substituents upon Formation of Dimeric Titanium(IV) Triscatecholates in DMSO Solution. Chemistry 2020; 26:1396-1405. [PMID: 31737953 PMCID: PMC7027801 DOI: 10.1002/chem.201904639] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/10/2019] [Indexed: 01/27/2023]
Abstract
The dissociation of hierarchically formed dimeric triple lithium bridged triscatecholate titanium(IV) helicates with hydrocarbyl esters as side groups is systematically investigated in DMSO. Primary alkyl, alkenyl, alkynyl as well as benzyl esters are studied in order to minimize steric effects close to the helicate core. The 1 H NMR dimerization constants for the monomer-dimer equilibrium show some solvent dependent influence of the side chains on the dimer stability. In the dimer, the ability of the hydrocarbyl ester groups to aggregate minimizes their contacts with the solvent molecules. Due to this, most solvophobic alkyl groups show the highest dimerization tendency followed by alkenyls, alkynyls and finally benzyls. Furthermore, trends within the different groups of compounds can be observed. For example, the dimer is destabilized by internal double or triple bonds due to π-π repulsion. A strong indication for solvent supported London dispersion interaction between the ester side groups is found by observation of an even/odd alternation of dimerization constants within the series of n-alkyls, n-Ω-alkenyls or n-Ω-alkynyls. This corresponds to the interaction of the parent hydrocarbons, as documented by an even/odd melting point alternation.
Collapse
Affiliation(s)
- A. Carel N. Kwamen
- Institut für Organische ChemieRWTH Aachen UniversityLandoltweg 152074AachenGermany
| | - Marcel Schlottmann
- Institut für Organische ChemieRWTH Aachen UniversityLandoltweg 152074AachenGermany
| | - David Van Craen
- Institut für Organische ChemieRWTH Aachen UniversityLandoltweg 152074AachenGermany
| | - Elisabeth Isaak
- Institut für Organische ChemieRWTH Aachen UniversityLandoltweg 152074AachenGermany
| | - Julia Baums
- Institut für Organische ChemieRWTH Aachen UniversityLandoltweg 152074AachenGermany
| | - Li Shen
- Institut für Organische ChemieRWTH Aachen UniversityLandoltweg 152074AachenGermany
| | - Ali Massomi
- Institut für Organische ChemieRWTH Aachen UniversityLandoltweg 152074AachenGermany
| | - Christoph Räuber
- Institut für Organische ChemieRWTH Aachen UniversityLandoltweg 152074AachenGermany
| | - Benjamin P. Joseph
- Institut für Organische ChemieRWTH Aachen UniversityLandoltweg 152074AachenGermany
| | - Gerhard Raabe
- Institut für Organische ChemieRWTH Aachen UniversityLandoltweg 152074AachenGermany
| | - Christian Göb
- Institut für Anorganische ChemieRWTH Aachen UniversityLandoltweg 152074AachenGermany
| | - Iris M. Oppel
- Institut für Anorganische ChemieRWTH Aachen UniversityLandoltweg 152074AachenGermany
| | - Rakesh Puttreddy
- University of JyväskyläDepartment of ChemistryP.O. Box 35Jyväskylä40014Finland
| | - Jas S. Ward
- University of JyväskyläDepartment of ChemistryP.O. Box 35Jyväskylä40014Finland
| | - Kari Rissanen
- University of JyväskyläDepartment of ChemistryP.O. Box 35Jyväskylä40014Finland
| | - Roland Fröhlich
- Organisch-Chemisches InstitutUniversität MünsterCorrensstrasse 4048149MünsterGermany
| | - Markus Albrecht
- Institut für Organische ChemieRWTH Aachen UniversityLandoltweg 152074AachenGermany
| |
Collapse
|
14
|
Satake A, Suzuki Y, Sugimoto M, Kuramochi Y. Mechanistic Study of the Solvent-Dependent Formation of Extended and Stacked Supramolecular Polymers Composed of Bis(imidazolylporphyrinatozinc) Molecules. Chemistry 2020; 26:669-684. [PMID: 31618485 DOI: 10.1002/chem.201903608] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/07/2019] [Revised: 09/29/2019] [Indexed: 12/27/2022]
Abstract
Bis(imidazolylporphyrinatozinc) molecules linked through a 1,3-butadiynylene moiety respond to the solvents they are dissolved in to afford exclusively extended (E) or stacked (S) supramolecular polymers. This system is expected to be a solvation/desolvation indicator. However, the principles underlying the solvent-dependent formation of the two types of polymers and the mechanism of the transformation between them are unclear. The formation of the polymers is considered to depend on the two types of complementary coordination bonds that can be formed and the π-π interactions between the porphyrins. In this study, the contributions and solvent dependence of both the coordination bonds and the π-π interactions have been investigated. The results clearly indicate that the coordination bonds are weakly or little solvent-dependent, and that the π-π interactions function effectively only in the inner porphyrins of the S-polymer and are strongly solvent-dependent. Thermodynamic analysis revealed that the formation of the E- or S-polymer in solution is determined by the total energies and the type of solvent used. The transformation of the E- to S-polymer was investigated by gel permeation chromatography. The kinetics of the transformation were also determined. The role of the terminal imidazolylporphyrinatozinc moieties was also investigated: The results indicate that the transformation from the E- to S-polymer occurs by an exchange mechanism between the polymers, induced by attack of terminal free imidazolyl groups on a polymer to zinc porphyrins on other polymers.
Collapse
Affiliation(s)
- Akiharu Satake
- Graduate School of Science, Tokyo University of Science, 1-3 Kagurazaka, Shinjuku-ku, Tokyo, 162-8601, Japan.,Department of Chemistry, Faculty of Science Division II, Tokyo University of Science, Tokyo, 162-8601, Japan
| | - Yuki Suzuki
- Graduate School of Science, Tokyo University of Science, 1-3 Kagurazaka, Shinjuku-ku, Tokyo, 162-8601, Japan
| | - Motonobu Sugimoto
- Graduate School of Science, Tokyo University of Science, 1-3 Kagurazaka, Shinjuku-ku, Tokyo, 162-8601, Japan
| | - Yusuke Kuramochi
- Graduate School of Science, Tokyo University of Science, 1-3 Kagurazaka, Shinjuku-ku, Tokyo, 162-8601, Japan.,Department of Chemistry, Faculty of Science Division II, Tokyo University of Science, Tokyo, 162-8601, Japan
| |
Collapse
|
15
|
Salami F, Zhao Y. Synthesis and characterization of bis(dithiafulvenyl)-substituted fluorenones and fluorenylidene-1,3-dithioles. NEW J CHEM 2020. [DOI: 10.1039/d0nj01495h] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
Abstract
A series of π-conjugated oligomers containing redox-active dithiafulvenyl (DTF) end groups and fluorenone/fluorenylidene-1,3-dithiole central units was synthesized and their structural, electronic, and electrochemical properties were investigated.
Collapse
Affiliation(s)
- Fatemeh Salami
- Department of Chemistry
- Memorial University of Newfoundland
- St. John's
- Canada
| | - Yuming Zhao
- Department of Chemistry
- Memorial University of Newfoundland
- St. John's
- Canada
| |
Collapse
|
16
|
Ling X, Wilcox CS. A Molecular Torsion Balance Study: A Nearby Anionic Group Exerts Little Influence on Hydrophobic Interactions between Nonpolar Surfaces. Chemistry 2019; 25:14010-14014. [PMID: 30913319 PMCID: PMC6763384 DOI: 10.1002/chem.201901208] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/14/2019] [Indexed: 11/10/2022]
Abstract
Polar groups have a solvent ordering effect on water and therefore may affect hydrophobic binding energies for nearby lipophilic surfaces. This would mean that determinations of excess surface free energy association energies require consideration of nearby polar functional groups. This paper reports results of a study to measure this possible effect. It was concluded from the models used here that an anionic polar group nearby a hydrophobic surface has little or no effect on the magnitude of hydrophobic association.
Collapse
Affiliation(s)
- Xiujun Ling
- HM Health Solutions Inc., Pittsburgh, PA, 15222, USA
| | - Craig S Wilcox
- Department of Chemistry, University of Pittsburgh, Pittsburgh, PA, 15260, USA
| |
Collapse
|
17
|
Li P, Vik EC, Maier JM, Karki I, Strickland SMS, Umana JM, Smith MD, Pellechia PJ, Shimizu KD. Electrostatically Driven CO−π Aromatic Interactions. J Am Chem Soc 2019; 141:12513-12517. [DOI: 10.1021/jacs.9b06363] [Citation(s) in RCA: 21] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
Affiliation(s)
- Ping Li
- Department of Chemistry and Biochemistry, University of South Carolina, Columbia, South Carolina 29208, United States
| | - Erik C. Vik
- Department of Chemistry and Biochemistry, University of South Carolina, Columbia, South Carolina 29208, United States
| | - Josef M. Maier
- Department of Chemistry and Biochemistry, University of South Carolina, Columbia, South Carolina 29208, United States
| | - Ishwor Karki
- Department of Chemistry and Biochemistry, University of South Carolina, Columbia, South Carolina 29208, United States
| | - Sharon M. S. Strickland
- Department of Biology, Chemistry, and Physics, Converse College, Spartanburg, South Carolina 29302, United States
| | - Jessica M. Umana
- Department of Biology, Chemistry, and Physics, Converse College, Spartanburg, South Carolina 29302, United States
| | - Mark D. Smith
- Department of Chemistry and Biochemistry, University of South Carolina, Columbia, South Carolina 29208, United States
| | - Perry J. Pellechia
- Department of Chemistry and Biochemistry, University of South Carolina, Columbia, South Carolina 29208, United States
| | - Ken D. Shimizu
- Department of Chemistry and Biochemistry, University of South Carolina, Columbia, South Carolina 29208, United States
| |
Collapse
|
18
|
Aliev AE, Motherwell WB. Some Recent Advances in the Design and Use of Molecular Balances for the Experimental Quantification of Intramolecular Noncovalent Interactions of π Systems. Chemistry 2019; 25:10516-10530. [DOI: 10.1002/chem.201900854] [Citation(s) in RCA: 21] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/24/2019] [Revised: 05/09/2019] [Indexed: 02/03/2023]
Affiliation(s)
- Abil E. Aliev
- Department of ChemistryUniversity College London 20 Gordon Street London WC1H 0AJ UK
| | - William B. Motherwell
- Department of ChemistryUniversity College London 20 Gordon Street London WC1H 0AJ UK
| |
Collapse
|
19
|
McLaughlin MF, Massolo E, Liu S, Johnson JS. Enantioselective Phenolic α-Oxidation Using H 2O 2 via an Unusual Double Dearomatization Mechanism. J Am Chem Soc 2019; 141:2645-2651. [PMID: 30698429 DOI: 10.1021/jacs.8b13006] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Abstract
Feedstock aromatic compounds are compelling low-cost starting points from which molecular complexity can be generated rapidly via oxidative dearomatization. Oxidative dearomatizations commonly rely heavily on hypervalent iodine or heavy metals to provide the requisite thermodynamic driving force for overcoming aromatic stabilization energy. This article describes oxidative dearomatizations of 2-(hydroxymethyl)phenols via their derived bis(dichloroacetates) using hydrogen peroxide as a mild oxidant that intercepts a transient quinone methide. A stereochemical study revealed that the reaction proceeds by a new mechanism relative to other phenol dearomatizations and is complementary to extant methods that rely on hypervalent iodine. Using a new chiral phase-transfer catalyst, the first asymmetric syntheses of 1-oxaspiro[2.5]octa-5,7-dien-4-ones were reported. The synthetic utility of the derived 1-oxaspiro[2.5]octadienones products is demonstrated in a downstream complexity-generating transformation.
Collapse
Affiliation(s)
- Michael F McLaughlin
- Department of Chemistry , University of North Carolina at Chapel Hill , Chapel Hill , North Carolina 27599-3290 , United States
| | - Elisabetta Massolo
- Department of Chemistry , University of North Carolina at Chapel Hill , Chapel Hill , North Carolina 27599-3290 , United States
| | - Shubin Liu
- Research Computing Center , University of North Carolina at Chapel Hill , Chapel Hill , North Carolina 27599-3420 , United States
| | - Jeffrey S Johnson
- Department of Chemistry , University of North Carolina at Chapel Hill , Chapel Hill , North Carolina 27599-3290 , United States
| |
Collapse
|
20
|
Hwang J, Li P, Vik EC, Karki I, Shimizu KD. Study of through-space substituent–π interactions using N-phenylimide molecular balances. Org Chem Front 2019. [DOI: 10.1039/c9qo00195f] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
Abstract
Substituent–π interactions associated with aromatic stacking interactions were experimentally measured using a small N-phenylimide molecular balance model system.
Collapse
Affiliation(s)
- Jungwun Hwang
- Department of Chemistry and Biochemistry
- University of South Carolina
- Columbia
- USA
| | - Ping Li
- Department of Chemistry and Biochemistry
- University of South Carolina
- Columbia
- USA
| | - Erik C. Vik
- Department of Chemistry and Biochemistry
- University of South Carolina
- Columbia
- USA
| | - Ishwor Karki
- Department of Chemistry and Biochemistry
- University of South Carolina
- Columbia
- USA
| | - Ken D. Shimizu
- Department of Chemistry and Biochemistry
- University of South Carolina
- Columbia
- USA
| |
Collapse
|
21
|
Hwang J, Li P, Smith MD, Warden CE, Sirianni DA, Vik EC, Maier JM, Yehl CJ, Sherrill CD, Shimizu KD. Tipping the Balance between S-π and O-π Interactions. J Am Chem Soc 2018; 140:13301-13307. [PMID: 30251855 DOI: 10.1021/jacs.8b07617] [Citation(s) in RCA: 31] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/31/2023]
Abstract
A comprehensive experimental survey consisting of 36 molecular balances was conducted to compare 18 pairs of S-π versus O-π interactions over a wide range of structural, geometric, and solvent parameters. A strong linear correlation was observed between the folding energies of the sulfur and oxygen balances across the entire library of balance pairs. The more stable interaction systematically switched from the O-π to S-π interaction. Computational studies of bimolecular PhSCH3-arene and PhOCH3-arene complexes were able to replicate the experimental trends in the molecular balances. The change in preference for the O-π to S-π interaction was due to the interplay of stabilizing (dispersion and solvophobic) and destabilizing (exchange-repulsion) terms arising from the differences in size and polarizability of the oxygen and sulfur atoms.
Collapse
Affiliation(s)
- Jungwun Hwang
- Department of Chemistry and Biochemistry , University of South Carolina , Columbia , South Carolina 29208 , United States
| | - Ping Li
- Department of Chemistry and Biochemistry , University of South Carolina , Columbia , South Carolina 29208 , United States
| | - Mark D Smith
- Department of Chemistry and Biochemistry , University of South Carolina , Columbia , South Carolina 29208 , United States
| | | | | | - Erik C Vik
- Department of Chemistry and Biochemistry , University of South Carolina , Columbia , South Carolina 29208 , United States
| | - Josef M Maier
- Department of Chemistry and Biochemistry , University of South Carolina , Columbia , South Carolina 29208 , United States
| | - Christopher J Yehl
- Department of Chemistry and Biochemistry , University of South Carolina , Columbia , South Carolina 29208 , United States
| | | | - Ken D Shimizu
- Department of Chemistry and Biochemistry , University of South Carolina , Columbia , South Carolina 29208 , United States
| |
Collapse
|
22
|
Lungerich D, Hitzenberger JF, Hampel F, Drewello T, Jux N. Superbenzene-Porphyrin Gas-Phase Architectures Derived from Intermolecular Dispersion Interactions. Chemistry 2018; 24:15818-15824. [DOI: 10.1002/chem.201803684] [Citation(s) in RCA: 20] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/18/2018] [Indexed: 12/12/2022]
Affiliation(s)
- Dominik Lungerich
- Department of Chemistry and Pharmacy & Interdisciplinary, Center for Molecular Materials (ICMM), Organic Chemistry II; Friedrich-Alexander-University Erlangen-Nuernberg; Nikolaus-Fiebiger-Str. 10 90458 Erlangen Germany
- Department of Chemistry & Molecular Technology Innovation Chair; University of Tokyo; 7-3-1 Hongo Bunkyo-ku Tokyo 113-0033 Japan
| | - Jakob F. Hitzenberger
- Department of Chemistry and Pharmacy; Physical Chemistry I; Friedrich-Alexander-University Erlangen-Nuernberg; Egerlandstr. 3 90458 Erlangen Germany
| | - Frank Hampel
- Department of Chemistry and Pharmacy & Interdisciplinary, Center for Molecular Materials (ICMM), Organic Chemistry II; Friedrich-Alexander-University Erlangen-Nuernberg; Nikolaus-Fiebiger-Str. 10 90458 Erlangen Germany
| | - Thomas Drewello
- Department of Chemistry and Pharmacy; Physical Chemistry I; Friedrich-Alexander-University Erlangen-Nuernberg; Egerlandstr. 3 90458 Erlangen Germany
| | - Norbert Jux
- Department of Chemistry and Pharmacy & Interdisciplinary, Center for Molecular Materials (ICMM), Organic Chemistry II; Friedrich-Alexander-University Erlangen-Nuernberg; Nikolaus-Fiebiger-Str. 10 90458 Erlangen Germany
| |
Collapse
|
23
|
Yue K, Guo YH, Pan JQ, He K, Qiao YY, Li QS, Xu FB. Novel self-adaptive boat-shaped complexes with a tetraphosphine ligand. Dalton Trans 2018; 47:13689-13695. [PMID: 30209484 DOI: 10.1039/c8dt02498g] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/20/2023]
Abstract
A series of novel boat-shaped host-guest complexes were designed and synthesized by the combination of a new calixarene fragment-based tetraphosphine ligand L with group 11 metal salts Cu(MeCN)4ClO4 and AgNO3 in a self-assembly process, and by the following anion exchange reactions of complex 1 with sodium p-toluenesulfonate, AcONa, PhCO2Na and sodium 9-anthrylcarboxylate. The host with a novel boat-shaped cavity is capable of self-adaptive encapsulation of various anions of different sizes through M(i)-O coordinations and CHπ interactions between the host and guest anion. The DFT calculations confirmed that the CHπ interaction played a vital role in the self-adaptive phenomenon in complexes 4-6.
Collapse
Affiliation(s)
- Kai Yue
- State Key Laboratory of Elemento-Organic Chemistry, Research Institute of Elemento-Organic Chemistry, Department of Chemistry, Nankai University, Tianjin 300071, P. R. China.
| | | | | | | | | | | | | |
Collapse
|
24
|
Gholipour A, Abolhassanzadeh Parizi M, Sadat Neyband R. The effect of π-π stacking interaction on hydrogen bonding in a molecular seesaw balance: A NMR study. Chem Phys Lett 2018. [DOI: 10.1016/j.cplett.2018.08.018] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
|
25
|
Østrøm I, Ortolan AO, Schneider FSS, Caramori GF, Parreira RLT. Quest for Insight into Ultrashort C–H···π Proximities in Molecular “Iron Maidens”. J Org Chem 2018; 83:5114-5122. [DOI: 10.1021/acs.joc.8b00461] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
Affiliation(s)
- Ina Østrøm
- Departamento de Química, Universidade Federal de Santa Catarina, Campus Universitário Trindade, CP 476, Florianópolis, Santa Catarina 88040-900, Brazil
| | - Alexandre O. Ortolan
- Departamento de Química, Universidade Federal de Santa Catarina, Campus Universitário Trindade, CP 476, Florianópolis, Santa Catarina 88040-900, Brazil
| | - Felipe S. S. Schneider
- Departamento de Química, Universidade Federal de Santa Catarina, Campus Universitário Trindade, CP 476, Florianópolis, Santa Catarina 88040-900, Brazil
| | - Giovanni F. Caramori
- Departamento de Química, Universidade Federal de Santa Catarina, Campus Universitário Trindade, CP 476, Florianópolis, Santa Catarina 88040-900, Brazil
| | - Renato L. T. Parreira
- Núcleo de Pesquisas em Ciências Exatas e Tecnológicas, Universidade de Franca, 14404-600 Franca, São Paulo, Brazil
| |
Collapse
|
26
|
Emenike BU, Spinelle RA, Rosario A, Shinn DW, Yoo B. Solvent Modulation of Aromatic Substituent Effects in Molecular Balances Controlled by CH−π Interactions. J Phys Chem A 2018; 122:909-915. [DOI: 10.1021/acs.jpca.7b09910] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Affiliation(s)
- Bright U. Emenike
- Department of Chemistry, State of University of New York, Old Westbury, New York 11568, United States
| | - Ronald A. Spinelle
- Department of Chemistry, State of University of New York, Old Westbury, New York 11568, United States
| | - Ambar Rosario
- Department of Chemistry, State of University of New York, Old Westbury, New York 11568, United States
| | - David W. Shinn
- Department of Math and Science, U.S. Merchant Marine Academy, Kings
Point, New York 11024, United States
| | - Barney Yoo
- Department of Chemistry, Hunter College, City University of New York, New York, New York 10065, United States
| |
Collapse
|
27
|
Maier JM, Li P, Ritchey JS, Yehl CJ, Shimizu KD. Anion-enhanced solvophobic effects in organic solvent. Chem Commun (Camb) 2018; 54:8502-8505. [DOI: 10.1039/c8cc03964j] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
Abstract
Molecular balanced measured a two-fold anion-induced enhancement of the solvophobic effect in organic solvents.
Collapse
Affiliation(s)
- Josef M. Maier
- Department of Chemistry and Biochemistry
- University of South Carolina
- Columbia
- USA
| | - Ping Li
- Department of Chemistry and Biochemistry
- University of South Carolina
- Columbia
- USA
| | - Jackson S. Ritchey
- Department of Chemistry and Biochemistry
- University of South Carolina
- Columbia
- USA
| | - Christopher J. Yehl
- Department of Chemistry and Biochemistry
- University of South Carolina
- Columbia
- USA
| | - Ken D. Shimizu
- Department of Chemistry and Biochemistry
- University of South Carolina
- Columbia
- USA
| |
Collapse
|
28
|
Motherwell WB, Moreno RB, Pavlakos I, Arendorf JRT, Arif T, Tizzard GJ, Coles SJ, Aliev AE. Noncovalent Interactions of π Systems with Sulfur: The Atomic Chameleon of Molecular Recognition. Angew Chem Int Ed Engl 2017; 57:1193-1198. [DOI: 10.1002/anie.201708485] [Citation(s) in RCA: 37] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/17/2017] [Revised: 11/16/2017] [Indexed: 12/24/2022]
Affiliation(s)
- William B. Motherwell
- Department of Chemistry; University College London; 20 Gordon Street London WC1H 0AJ UK
| | - Rafael B. Moreno
- Department of Chemistry; University College London; 20 Gordon Street London WC1H 0AJ UK
| | - Ilias Pavlakos
- Department of Chemistry; University College London; 20 Gordon Street London WC1H 0AJ UK
| | | | - Tanzeel Arif
- Department of Chemistry; University College London; 20 Gordon Street London WC1H 0AJ UK
| | - Graham J. Tizzard
- School of Chemistry; University of Southampton; University Road Southampton SO17 1BJ UK
| | - Simon J. Coles
- School of Chemistry; University of Southampton; University Road Southampton SO17 1BJ UK
| | - Abil E. Aliev
- Department of Chemistry; University College London; 20 Gordon Street London WC1H 0AJ UK
| |
Collapse
|
29
|
Motherwell WB, Moreno RB, Pavlakos I, Arendorf JRT, Arif T, Tizzard GJ, Coles SJ, Aliev AE. Noncovalent Interactions of π Systems with Sulfur: The Atomic Chameleon of Molecular Recognition. Angew Chem Int Ed Engl 2017. [DOI: 10.1002/ange.201708485] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Affiliation(s)
- William B. Motherwell
- Department of Chemistry; University College London; 20 Gordon Street London WC1H 0AJ UK
| | - Rafael B. Moreno
- Department of Chemistry; University College London; 20 Gordon Street London WC1H 0AJ UK
| | - Ilias Pavlakos
- Department of Chemistry; University College London; 20 Gordon Street London WC1H 0AJ UK
| | | | - Tanzeel Arif
- Department of Chemistry; University College London; 20 Gordon Street London WC1H 0AJ UK
| | - Graham J. Tizzard
- School of Chemistry; University of Southampton; University Road Southampton SO17 1BJ UK
| | - Simon J. Coles
- School of Chemistry; University of Southampton; University Road Southampton SO17 1BJ UK
| | - Abil E. Aliev
- Department of Chemistry; University College London; 20 Gordon Street London WC1H 0AJ UK
| |
Collapse
|
30
|
Van Craen D, Rath WH, Huth M, Kemp L, Räuber C, Wollschläger JM, Schalley CA, Valkonen A, Rissanen K, Albrecht M. Chasing Weak Forces: Hierarchically Assembled Helicates as a Probe for the Evaluation of the Energetics of Weak Interactions. J Am Chem Soc 2017; 139:16959-16966. [PMID: 29068687 DOI: 10.1021/jacs.7b10098] [Citation(s) in RCA: 36] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]
Abstract
London dispersion forces are the weakest interactions between molecules. Because of this, their influence on chemical processes is often low, but can definitely not be ignored, and even becomes important in cases of molecules with large contact surfaces. Hierarchically assembled dinuclear titanium(IV) helicates represent a rare example in which the direct observation of London dispersion forces is possible in solution even in the presence of strong cohesive solvent effects. Hereby, the dispersion forces do not unlimitedly support the formation of the dimeric complexes. Although they have some favorable enthalpic contribution to the dimerization of the monomeric complex units, large flexible substituents become conformationally restricted by the interactions leading to an entropic disadvantage. The dimeric helicates are entropically destabilized.
Collapse
Affiliation(s)
- David Van Craen
- Institut für Organische Chemie, RWTH Aachen University , Landoltweg 1, Aachen 52074, Germany
| | - Wolfgang H Rath
- Institut für Organische Chemie, RWTH Aachen University , Landoltweg 1, Aachen 52074, Germany
| | - Marina Huth
- Institut für Organische Chemie, RWTH Aachen University , Landoltweg 1, Aachen 52074, Germany
| | - Laura Kemp
- Institut für Organische Chemie, RWTH Aachen University , Landoltweg 1, Aachen 52074, Germany
| | - Christoph Räuber
- Institut für Organische Chemie, RWTH Aachen University , Landoltweg 1, Aachen 52074, Germany
| | - Jan M Wollschläger
- Institut für Chemie und Biochemie-Organische Chemie, Freie Universität Berlin , Takustrasse 3, Berlin 14195, Germany
| | - Christoph A Schalley
- Institut für Chemie und Biochemie-Organische Chemie, Freie Universität Berlin , Takustrasse 3, Berlin 14195, Germany
| | - Arto Valkonen
- Department of Chemistry, Nanoscience Center, University of Jyvaskyla , Survontie 9 B, Jyväskylä 40014, Finland
| | - Kari Rissanen
- Department of Chemistry, Nanoscience Center, University of Jyvaskyla , Survontie 9 B, Jyväskylä 40014, Finland
| | - Markus Albrecht
- Institut für Organische Chemie, RWTH Aachen University , Landoltweg 1, Aachen 52074, Germany
| |
Collapse
|
31
|
Szala-Bilnik J, Falkowska M, Bowron DT, Hardacre C, Youngs TGA. The Structure of Ethylbenzene, Styrene and Phenylacetylene Determined by Total Neutron Scattering. Chemphyschem 2017; 18:2541-2548. [PMID: 28672104 PMCID: PMC5811833 DOI: 10.1002/cphc.201700393] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/12/2017] [Revised: 06/30/2017] [Indexed: 11/10/2022]
Abstract
Organic solvents such as phenylacetylene, styrene and ethylbenzene are widely used in industrial processes, especially in the production of rubber or thermoplastics. Despite their important applications detailed knowledge about their structure is limited. In this paper the structures of these three aromatic solvents were investigated using neutron diffraction. The results show that many of their structural characteristics are similar, although the structure of phenylacetylene is more ordered and has a smaller solvation sphere than either ethylbenzene or styrene. Two regions within the first coordination sphere, in which the surrounding molecules show different preferable orientations with respect to the central molecule, were found for each liquid. Additionally, the localisation of the aliphatic chains reveals that they tend to favour closer interactions with each other than to the aromatic rings of the adjacent molecules.
Collapse
Affiliation(s)
- Joanna Szala-Bilnik
- School of Chemical Engineering and Analytical Science, The University of Manchester, Manchester, M13 9PL, UK.,STFC ISIS Facility, Rutherford Appleton Laboratory, Chilton, Didcot, Oxon, OX11 0QX, UK
| | - Marta Falkowska
- STFC ISIS Facility, Rutherford Appleton Laboratory, Chilton, Didcot, Oxon, OX11 0QX, UK.,School of Chemistry and Chemical Engineering, Queen's University Belfast, Belfast, BT9 5AG, UK
| | - Daniel T Bowron
- STFC ISIS Facility, Rutherford Appleton Laboratory, Chilton, Didcot, Oxon, OX11 0QX, UK
| | - Christopher Hardacre
- School of Chemical Engineering and Analytical Science, The University of Manchester, Manchester, M13 9PL, UK
| | - Tristan G A Youngs
- STFC ISIS Facility, Rutherford Appleton Laboratory, Chilton, Didcot, Oxon, OX11 0QX, UK
| |
Collapse
|
32
|
Stratton SG, Taumoefolau GH, Purnell GE, Rasooly M, Czaplyski WL, Harbron EJ. Tuning the p
K
a
of Fluorescent Rhodamine pH Probes through Substituent Effects. Chemistry 2017; 23:14064-14072. [DOI: 10.1002/chem.201703176] [Citation(s) in RCA: 40] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/10/2017] [Indexed: 01/03/2023]
Affiliation(s)
- Sarah G. Stratton
- Department of Chemistry The College of William and Mary Williamsburg VA 23187-8795 USA
| | - Grace H. Taumoefolau
- Department of Chemistry The College of William and Mary Williamsburg VA 23187-8795 USA
| | - Grace E. Purnell
- Department of Chemistry The College of William and Mary Williamsburg VA 23187-8795 USA
| | - Mona Rasooly
- Department of Chemistry The College of William and Mary Williamsburg VA 23187-8795 USA
| | - William L. Czaplyski
- Department of Chemistry The College of William and Mary Williamsburg VA 23187-8795 USA
| | - Elizabeth J. Harbron
- Department of Chemistry The College of William and Mary Williamsburg VA 23187-8795 USA
| |
Collapse
|
33
|
Ardejani MS, Powers ET, Kelly JW. Using Cooperatively Folded Peptides To Measure Interaction Energies and Conformational Propensities. Acc Chem Res 2017; 50:1875-1882. [PMID: 28723063 DOI: 10.1021/acs.accounts.7b00195] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
Abstract
The rates and equilibria of the folding of biopolymers are determined by the conformational preferences of the subunits that make up the sequence of the biopolymer and by the interactions that are formed in the folded state in aqueous solution. Because of the centrality of these processes to life, quantifying conformational propensities and interaction strengths is vitally important to understanding biology. In this Account, we describe our use of peptide model systems that fold cooperatively yet are small enough to be chemically synthesized to measure such quantities. The necessary measurements are made by perturbing an interaction or conformation of interest by mutation and measuring the difference between the folding free energies of the wild type (in which the interaction or conformation is undisturbed) and the mutant model peptides (in which the interaction has been eliminated or the conformational propensities modified). With the proper controls and provided that the peptide model system in question folds via a two-state process, these folding free energy differences can be accurate measures of interaction strengths or conformational propensities. This method has the advantage of having high sensitivity and high dynamic range because the energies of interest are coupled to folding free energies, which can be measured with precisions on the order of a few tenths of a kilocalorie by well-established biophysical methods, like chaotrope or thermal denaturation studies monitored by fluorescence or circular dichroism. In addition, because the model peptides can be chemically synthesized, the full arsenal of natural and unnatural amino acids can be used to tune perturbations to be as drastic or subtle as desired. This feature is particularly noteworthy because it enables the use of analytical tools developed for physical organic chemistry, especially linear free energy relationships, to decompose interaction energies into their component parts to obtain a deeper understanding of the forces that drive interactions in biopolymers. We have used this approach, primarily with the WW domain derived from the human Pin1 protein as our model system, to assess hydrogen bond strengths (especially those formed by backbone amides), the dependence of hydrogen bond strengths on the environment in which they form, β-turn propensities of both natural sequences and small molecule β-turn mimics, and the energetics of carbohydrate-protein interactions. In each case, the combination of synthetic accessibility, the ease of measuring folding energies, and the robustness of the structure of the Pin1 WW domain to mutation enabled us to obtain incisive measurements of quantities that have been challenging to measure by other methods.
Collapse
Affiliation(s)
- Maziar S. Ardejani
- Department
of Chemistry, The Scripps Research Institute, La Jolla, California 92037, United States
| | - Evan T. Powers
- Department
of Chemistry, The Scripps Research Institute, La Jolla, California 92037, United States
| | - Jeffery W. Kelly
- Department
of Chemistry, The Scripps Research Institute, La Jolla, California 92037, United States
- Department
of Molecular Medicine, The Scripps Research Institute, La Jolla, California 92037, United States
- The
Skaggs Institute for Chemical Biology, The Scripps Research Institute, La
Jolla, California 92037, United States
| |
Collapse
|
34
|
Maier JM, Li P, Vik EC, Yehl CJ, Strickland SMS, Shimizu KD. Measurement of Solvent OH−π Interactions Using a Molecular Balance. J Am Chem Soc 2017; 139:6550-6553. [DOI: 10.1021/jacs.7b02349] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Affiliation(s)
- Josef M. Maier
- Department
of Chemistry and Biochemistry, University of South Carolina, Columbia, South Carolina 29208, United States
| | - Ping Li
- Department
of Chemistry and Biochemistry, University of South Carolina, Columbia, South Carolina 29208, United States
| | - Erik C. Vik
- Department
of Chemistry and Biochemistry, University of South Carolina, Columbia, South Carolina 29208, United States
| | - Christopher J. Yehl
- Department
of Chemistry and Biochemistry, University of South Carolina, Columbia, South Carolina 29208, United States
| | - Sharon M. S. Strickland
- Department
of Biology, Chemistry, and Physics, Converse College, Spartanburg, South Carolina 29302, United States
| | - Ken D. Shimizu
- Department
of Chemistry and Biochemistry, University of South Carolina, Columbia, South Carolina 29208, United States
| |
Collapse
|
35
|
Sun H, Horatscheck A, Martos V, Bartetzko M, Uhrig U, Lentz D, Schmieder P, Nazaré M. Direct Experimental Evidence for Halogen-Aryl π Interactions in Solution from Molecular Torsion Balances. Angew Chem Int Ed Engl 2017. [DOI: 10.1002/ange.201700520] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Affiliation(s)
- Han Sun
- Departments of Chemical Biology and Structural Biology; Leibniz-Institut fϋr Molekulare Pharmakologie (FMP); Campus Berlin-Buch; Robert-Roessle-Strasse 10 13125 Berlin Germany
| | - André Horatscheck
- Departments of Chemical Biology and Structural Biology; Leibniz-Institut fϋr Molekulare Pharmakologie (FMP); Campus Berlin-Buch; Robert-Roessle-Strasse 10 13125 Berlin Germany
- Drug Discovery and Development Centre (H3D); Department of Chemistry; University of Cape Town; Rondebosch 7701 South Africa
| | - Vera Martos
- Departments of Chemical Biology and Structural Biology; Leibniz-Institut fϋr Molekulare Pharmakologie (FMP); Campus Berlin-Buch; Robert-Roessle-Strasse 10 13125 Berlin Germany
| | - Max Bartetzko
- Departments of Chemical Biology and Structural Biology; Leibniz-Institut fϋr Molekulare Pharmakologie (FMP); Campus Berlin-Buch; Robert-Roessle-Strasse 10 13125 Berlin Germany
- Max-Planck-Institut für Kolloid- und Grenzflächenforschung; Am Mühlenberg 1 14476 Potsdam Germany
| | - Ulrike Uhrig
- European Molecular Biology Laboratory (EMBL); Chemical Biology Core Facility; Meyerhofstrasse 1 69117 Heidelberg Germany
| | - Dieter Lentz
- Institut für Chemie und Biochemie; Anorganische Chemie; Freie Universität Berlin; Fabeckstrasse 34-36 14195 Berlin Germany
| | - Peter Schmieder
- Departments of Chemical Biology and Structural Biology; Leibniz-Institut fϋr Molekulare Pharmakologie (FMP); Campus Berlin-Buch; Robert-Roessle-Strasse 10 13125 Berlin Germany
| | - Marc Nazaré
- Departments of Chemical Biology and Structural Biology; Leibniz-Institut fϋr Molekulare Pharmakologie (FMP); Campus Berlin-Buch; Robert-Roessle-Strasse 10 13125 Berlin Germany
| |
Collapse
|
36
|
Sun H, Horatscheck A, Martos V, Bartetzko M, Uhrig U, Lentz D, Schmieder P, Nazaré M. Direct Experimental Evidence for Halogen-Aryl π Interactions in Solution from Molecular Torsion Balances. Angew Chem Int Ed Engl 2017; 56:6454-6458. [PMID: 28452102 DOI: 10.1002/anie.201700520] [Citation(s) in RCA: 28] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/16/2017] [Indexed: 12/24/2022]
Abstract
We dissected halogen-aryl π interactions experimentally using a bicyclic N-arylimide based molecular torsion balances system, which is based on the influence of the non-bonded interaction on the equilibria between folded and unfolded states. Through comparison of balances modulated by higher halogens with fluorine balances, we determined the magnitude of the halogen-aryl π interactions in our unimolecular systems to be larger than -5.0 kJ mol-1 , which is comparable with the magnitude estimated in the biomolecular systems. Our study provides direct experimental evidence of halogen-aryl π interactions in solution, which until now have only been revealed in the solid state and evaluated theoretically by quantum-mechanical calculations.
Collapse
Affiliation(s)
- Han Sun
- Departments of Chemical Biology and Structural Biology, Leibniz-Institut fϋr Molekulare Pharmakologie (FMP), Campus Berlin-Buch, Robert-Roessle-Strasse 10, 13125, Berlin, Germany
| | - André Horatscheck
- Departments of Chemical Biology and Structural Biology, Leibniz-Institut fϋr Molekulare Pharmakologie (FMP), Campus Berlin-Buch, Robert-Roessle-Strasse 10, 13125, Berlin, Germany.,Drug Discovery and Development Centre (H3D), Department of Chemistry, University of Cape Town, Rondebosch, 7701, South Africa
| | - Vera Martos
- Departments of Chemical Biology and Structural Biology, Leibniz-Institut fϋr Molekulare Pharmakologie (FMP), Campus Berlin-Buch, Robert-Roessle-Strasse 10, 13125, Berlin, Germany
| | - Max Bartetzko
- Departments of Chemical Biology and Structural Biology, Leibniz-Institut fϋr Molekulare Pharmakologie (FMP), Campus Berlin-Buch, Robert-Roessle-Strasse 10, 13125, Berlin, Germany.,Max-Planck-Institut für Kolloid- und Grenzflächenforschung, Am Mühlenberg 1, 14476, Potsdam, Germany
| | - Ulrike Uhrig
- European Molecular Biology Laboratory (EMBL), Chemical Biology Core Facility, Meyerhofstrasse 1, 69117, Heidelberg, Germany
| | - Dieter Lentz
- Institut für Chemie und Biochemie, Anorganische Chemie, Freie Universität Berlin, Fabeckstrasse 34-36, 14195, Berlin, Germany
| | - Peter Schmieder
- Departments of Chemical Biology and Structural Biology, Leibniz-Institut fϋr Molekulare Pharmakologie (FMP), Campus Berlin-Buch, Robert-Roessle-Strasse 10, 13125, Berlin, Germany
| | - Marc Nazaré
- Departments of Chemical Biology and Structural Biology, Leibniz-Institut fϋr Molekulare Pharmakologie (FMP), Campus Berlin-Buch, Robert-Roessle-Strasse 10, 13125, Berlin, Germany
| |
Collapse
|
37
|
Chung MK, White PS, Lee SJ, Gagné MR, Waters ML. Investigation of a Catenane with a Responsive Noncovalent Network: Mimicking Long-Range Responses in Proteins. J Am Chem Soc 2016; 138:13344-13352. [PMID: 27631725 PMCID: PMC5553285 DOI: 10.1021/jacs.6b07833] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
We report a functional synthetic model for studying the noncovalent networks (NCNs) required for complex protein functions. The model [2]-catenane is self-assembled from dipeptide building blocks and contains an extensive network of hydrogen bonds and aromatic interactions. Perturbations to the catenane cause compensating changes in the NCNs structure and dynamics, resulting in long-distance changes reminiscent of a protein. Key findings include the notion that NCNs require regions of negative cooperativity, or "frustrated" noncovalent interactions, as a source of potential energy for driving the response. We refer to this potential energy as latent free energy and describe a mechanistic and energetic model for responsive systems.
Collapse
Affiliation(s)
| | | | - Stephen J. Lee
- U.S. Army Research Office, P.O. Box 12211, Research Triangle Park, North Carolina 27709, United States
| | | | | |
Collapse
|
38
|
Abstract
On the basis of many literature measurements, a critical overview is given on essential noncovalent interactions in synthetic supramolecular complexes, accompanied by analyses with selected proteins. The methods, which can be applied to derive binding increments for single noncovalent interactions, start with the evaluation of consistency and additivity with a sufficiently large number of different host-guest complexes by applying linear free energy relations. Other strategies involve the use of double mutant cycles, of molecular balances, of dynamic combinatorial libraries, and of crystal structures. Promises and limitations of these strategies are discussed. Most of the analyses stem from solution studies, but a few also from gas phase. The empirically derived interactions are then presented on the basis of selected complexes with respect to ion pairing, hydrogen bonding, electrostatic contributions, halogen bonding, π-π-stacking, dispersive forces, cation-π and anion-π interactions, and contributions from the hydrophobic effect. Cooperativity in host-guest complexes as well as in self-assembly, and entropy factors are briefly highlighted. Tables with typical values for single noncovalent free energies and polarity parameters are in the Supporting Information.
Collapse
Affiliation(s)
- Frank Biedermann
- Institute of Nanotechnology, Karlsruhe Institute of Technology (KIT) , Hermann-von-Helmholtz Platz 1, 76344 Eggenstein-Leopoldshafen, Germany
| | - Hans-Jörg Schneider
- FR Organische Chemie der Universität des Saarlandes , D-66041 Saarbrücken, Germany
| |
Collapse
|
39
|
Emenike BU, Bey SN, Spinelle RA, Jones JT, Yoo B, Zeller M. Cationic CH⋯π interactions as a function of solvation. Phys Chem Chem Phys 2016; 18:30940-30945. [DOI: 10.1039/c6cp06800f] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The energy of a cationic CH⋯π interaction was measured as a function of solvation using molecular torsion balances.
Collapse
Affiliation(s)
- Bright U. Emenike
- Department of Chemistry & Physics
- State University of New York
- Old Westbury
- USA
| | - Sara N. Bey
- Department of Chemistry & Physics
- State University of New York
- Old Westbury
- USA
| | - Ronald A. Spinelle
- Department of Chemistry & Physics
- State University of New York
- Old Westbury
- USA
| | - Jacob T. Jones
- Department of Chemistry & Physics
- State University of New York
- Old Westbury
- USA
| | - Barney Yoo
- Department of Chemistry
- Hunter College
- City University of New York
- New York
- USA
| | | |
Collapse
|
40
|
Yang L, Brazier JB, Hubbard TA, Rogers DM, Cockroft SL. Can Dispersion Forces Govern Aromatic Stacking in an Organic Solvent? Angew Chem Int Ed Engl 2015. [DOI: 10.1002/ange.201508056] [Citation(s) in RCA: 28] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
Affiliation(s)
- Lixu Yang
- EaStCHEM School of Chemistry; University of Edinburgh, Joseph Black Building; David Brewster Road Edinburgh EH9 3FJ UK
| | - John B. Brazier
- EaStCHEM School of Chemistry; University of Edinburgh, Joseph Black Building; David Brewster Road Edinburgh EH9 3FJ UK
| | - Thomas A. Hubbard
- EaStCHEM School of Chemistry; University of Edinburgh, Joseph Black Building; David Brewster Road Edinburgh EH9 3FJ UK
| | - David M. Rogers
- EaStCHEM School of Chemistry; University of Edinburgh, Joseph Black Building; David Brewster Road Edinburgh EH9 3FJ UK
| | - Scott L. Cockroft
- EaStCHEM School of Chemistry; University of Edinburgh, Joseph Black Building; David Brewster Road Edinburgh EH9 3FJ UK
| |
Collapse
|
41
|
Yang L, Brazier JB, Hubbard TA, Rogers DM, Cockroft SL. Can Dispersion Forces Govern Aromatic Stacking in an Organic Solvent? Angew Chem Int Ed Engl 2015; 55:912-6. [DOI: 10.1002/anie.201508056] [Citation(s) in RCA: 71] [Impact Index Per Article: 7.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/27/2015] [Revised: 10/13/2015] [Indexed: 12/27/2022]
Affiliation(s)
- Lixu Yang
- EaStCHEM School of Chemistry; University of Edinburgh, Joseph Black Building; David Brewster Road Edinburgh EH9 3FJ UK
| | - John B. Brazier
- EaStCHEM School of Chemistry; University of Edinburgh, Joseph Black Building; David Brewster Road Edinburgh EH9 3FJ UK
| | - Thomas A. Hubbard
- EaStCHEM School of Chemistry; University of Edinburgh, Joseph Black Building; David Brewster Road Edinburgh EH9 3FJ UK
| | - David M. Rogers
- EaStCHEM School of Chemistry; University of Edinburgh, Joseph Black Building; David Brewster Road Edinburgh EH9 3FJ UK
| | - Scott L. Cockroft
- EaStCHEM School of Chemistry; University of Edinburgh, Joseph Black Building; David Brewster Road Edinburgh EH9 3FJ UK
| |
Collapse
|
42
|
Emenike BU, Bey SN, Bigelow BC, Chakravartula SVS. Quantitative model for rationalizing solvent effect in noncovalent CH-Aryl interactions. Chem Sci 2015; 7:1401-1407. [PMID: 29910898 PMCID: PMC5975927 DOI: 10.1039/c5sc03550c] [Citation(s) in RCA: 32] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/20/2015] [Accepted: 11/17/2015] [Indexed: 11/21/2022] Open
Abstract
Establishing a linear relationship between CH–aryl interaction energies and the properties of the solvating media.
The strength of CH–aryl interactions (ΔG) in 14 solvents was determined via the conformational analysis of a molecular torsion balance. The molecular balance adopted folded and unfolded conformers in which the ratio of the conformers in solution provided a quantitative measure of ΔG as a function of solvation. While a single empirical solvent parameter based on solvent polarity failed to explain solvent effect in the molecular balance, it is shown that these ΔG values can be correlated through a multiparameter linear solvation energy relationship (LSER) using the equation introduced by Kamlet and Taft. The resulting LSER equation [ΔG = –0.24 + 0.23α – 0.68β – 0.1π* + 0.09δ]—expresses ΔG as a function of Kamlet–Taft solvent parameters—revealed that specific solvent effects (α and β) are mainly responsible for “tipping” the molecular balance in favour of one conformer over the other, where α represents a solvents' hydrogen-bond acidity and β represents a solvents' hydrogen-bond basicity. Furthermore, using extrapolated data (α and β) and the known π* value for the gas phase, the LSER equation predicted ΔG in the gas phase to be –0.31 kcal mol–1, which agrees with –0.35 kcal mol–1 estimated from DFT-D calculations.
Collapse
Affiliation(s)
- Bright U Emenike
- Department of Chemistry & Physics , State University of New York , 223 Store Hill Road, Old Westbury , NY 11568 , USA .
| | - Sara N Bey
- Department of Chemistry & Physics , State University of New York , 223 Store Hill Road, Old Westbury , NY 11568 , USA .
| | - Brianna C Bigelow
- Department of Chemistry & Physics , State University of New York , 223 Store Hill Road, Old Westbury , NY 11568 , USA .
| | - Srinivas V S Chakravartula
- Department of Chemistry & Biochemistry , Hunter College Graduation Center , City University of New York , 695 Park Avenue New York , NY 10065 , USA
| |
Collapse
|
43
|
Synthesis and molecular assembly of benzenoid ring-mounted U-shaped septuple-bridged [7,7]orthocyclophanes walled by cofacial quinoxaline rings. Tetrahedron 2015. [DOI: 10.1016/j.tet.2015.06.046] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
|
44
|
Ams MR, Fields M, Grabnic T, Janesko BG, Zeller M, Sheridan R, Shay A. Unraveling the Role of Alkyl F on CH−π Interactions and Uncovering the Tipping Point for Fluorophobicity. J Org Chem 2015; 80:7764-9. [DOI: 10.1021/acs.joc.5b01072] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Affiliation(s)
- Mark R. Ams
- Department
of Chemistry, Allegheny College, 520 North Main Street, Meadville, Pennsylvania 16335-3902, United States
| | - Michael Fields
- Department
of Chemistry, Allegheny College, 520 North Main Street, Meadville, Pennsylvania 16335-3902, United States
| | - Timothy Grabnic
- Department
of Chemistry, Allegheny College, 520 North Main Street, Meadville, Pennsylvania 16335-3902, United States
| | - Benjamin G. Janesko
- Department
of Chemistry, Texas Christian University, 2800 Souh University Drive, Fort Worth, Texas 76109, United States
| | - Matthias Zeller
- Department
of Chemistry, Youngstown State University, One University Plaza, Youngstown, Ohio 44555, United States
| | - Rose Sheridan
- Department
of Chemistry, Allegheny College, 520 North Main Street, Meadville, Pennsylvania 16335-3902, United States
| | - Amanda Shay
- Department
of Chemistry, Allegheny College, 520 North Main Street, Meadville, Pennsylvania 16335-3902, United States
| |
Collapse
|
45
|
Maier JM, Li P, Hwang J, Smith MD, Shimizu KD. Measurement of Silver−π Interactions in Solution Using Molecular Torsion Balances. J Am Chem Soc 2015; 137:8014-7. [DOI: 10.1021/jacs.5b04554] [Citation(s) in RCA: 65] [Impact Index Per Article: 7.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Josef M. Maier
- Department
of Chemistry and
Biochemistry, University of South Carolina, Columbia, South Carolina 29208, United States
| | - Ping Li
- Department
of Chemistry and
Biochemistry, University of South Carolina, Columbia, South Carolina 29208, United States
| | - Jungwun Hwang
- Department
of Chemistry and
Biochemistry, University of South Carolina, Columbia, South Carolina 29208, United States
| | - Mark D. Smith
- Department
of Chemistry and
Biochemistry, University of South Carolina, Columbia, South Carolina 29208, United States
| | - Ken D. Shimizu
- Department
of Chemistry and
Biochemistry, University of South Carolina, Columbia, South Carolina 29208, United States
| |
Collapse
|
46
|
Pavlakos I, Arif T, Aliev AE, Motherwell WB, Tizzard GJ, Coles SJ. Noncovalent Lone Pair⋅⋅⋅(No-π!)-Heteroarene Interactions: The Janus-Faced Hydroxy Group. Angew Chem Int Ed Engl 2015; 54:8169-74. [DOI: 10.1002/anie.201502103] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/05/2015] [Indexed: 11/10/2022]
|
47
|
Pavlakos I, Arif T, Aliev AE, Motherwell WB, Tizzard GJ, Coles SJ. Noncovalent Lone Pair⋅⋅⋅(No-π!)-Heteroarene Interactions: The Janus-Faced Hydroxy Group. Angew Chem Int Ed Engl 2015. [DOI: 10.1002/ange.201502103] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
|
48
|
Hwang J, Dial BE, Li P, Kozik ME, Smith MD, Shimizu KD. How important are dispersion interactions to the strength of aromatic stacking interactions in solution? Chem Sci 2015; 6:4358-4364. [PMID: 29218207 PMCID: PMC5707509 DOI: 10.1039/c5sc01370d] [Citation(s) in RCA: 79] [Impact Index Per Article: 8.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/15/2015] [Accepted: 05/15/2015] [Indexed: 01/07/2023] Open
Abstract
The similarity of aromatic stacking energies in solution for varying sized surfaces suggests that dispersion interactions are a minor contributor.
In this study, the contributions of London dispersion forces to the strength of aromatic stacking interactions in solution were experimentally assessed using a small molecule model system. A series of molecular torsion balances were designed to measure an intramolecular stacking interaction via a conformational equilibrium. To probe the importance of the dispersion term, the size and polarizability of one of the aromatic surfaces were systematically increased (benzene, naphthalene, phenanthrene, biphenyl, diphenylethene, and diphenylacetylene). After correcting for solvophobic, linker, and electrostatic substituent effects, the variations due to polarizability were found to be an order of magnitude smaller in solution than in comparison to analogous computational studies in vacuo. These results suggest that in solution the dispersion term is a small component of the aromatic stacking interaction in contrast to their dominant role in vacuo.
Collapse
Affiliation(s)
- Jungwun Hwang
- Department of Chemistry and Biochemistry , University of South Carolina , SC 29208 , USA .
| | - Brent E Dial
- Department of Chemistry and Biochemistry , University of South Carolina , SC 29208 , USA .
| | - Ping Li
- Department of Chemistry and Biochemistry , University of South Carolina , SC 29208 , USA .
| | - Michael E Kozik
- Department of Chemistry and Biochemistry , University of South Carolina , SC 29208 , USA .
| | - Mark D Smith
- Department of Chemistry and Biochemistry , University of South Carolina , SC 29208 , USA .
| | - Ken D Shimizu
- Department of Chemistry and Biochemistry , University of South Carolina , SC 29208 , USA .
| |
Collapse
|
49
|
Aliev AE, Arendorf JRT, Pavlakos I, Moreno RB, Porter MJ, Rzepa HS, Motherwell WB. Surfing π Clouds for Noncovalent Interactions: Arenes versus Alkenes. Angew Chem Int Ed Engl 2014. [DOI: 10.1002/ange.201409672] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
|
50
|
Aliev AE, Arendorf JRT, Pavlakos I, Moreno RB, Porter MJ, Rzepa HS, Motherwell WB. Surfing π Clouds for Noncovalent Interactions: Arenes versus Alkenes. Angew Chem Int Ed Engl 2014; 54:551-5. [DOI: 10.1002/anie.201409672] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/01/2014] [Indexed: 11/07/2022]
|