Budgetary and biogeochemical implications of N2O isotope signatures in the Arabian Sea

Unprecedented warming impacts on phytoplankton and special emphasis on diatom-diazotroph associations in the oligotrophic waters of the Eastern Arabian sea

The impact of anomalous warming on the phytoplankton dynamics in the euphotic zone (0-60 m depth) of the eastern Arabian Sea (EAS) during the southwest monsoon (SWM-2020) was investigated along the 68°E transect from 8°N to 21°N. During SWM-2020, sea surface temperatures (SSTs) along the transect exceeded 28 °C, with temperatures of ∼29-30 °C recorded in the North of the Findlater Jet Axis (NFJA). The active Findlater Jet (FJ) modulated the thermocline, causing shallower thermocline in the North EAS (NEAS, 16-21°N) and deeper thermocline in the South EAS (SEAS, 8-15°N). The increased stratification due to warming reduced the vertical mixing and exacerbated the oligotrophic condition within the MLDs in the NEAS. High dissolved inorganic silicate and phosphorous with low nitrate concentrations favouring dinoflagellates and diatom-diazotroph associations (DDAs) within the MLDs, particularly in the NEAS. In the NEAS, heterocystous cyanobacteria Richelia was abundant as free-living and in endosymbiosis with Rhizosolenia and Hemiaulus, while coccoid cells of Crocosphaera, symbiotic with Climacodium sp., thrived in both SEAS and NEAS indicating a critical role of dissolved iron in distribution of DDAs. DDAs were abundant in subsurface waters (25-40 m) and rare or absent within the nutricline and subsurface chlorophyll maximum (SCM, 40-60 m depths). High dissolved ammonium concentration in the NEAS indicated that N2 fixed by DDAs could be supplied into N-limited waters. A high abundance of unhealthy and moribund host-symbiotic stages suggests extreme warming, and shallower nitracline could harm DDAs in the EAS. This study highlights the importance of DDAs in the EAS, which remains poorly understood, and whose underestimation in N2 and C fixation can impact the regional nitrogen and carbon budgets.

Suboxic waters of the eastern Arabian Sea shelter secondary chlorophyll maximum dominated by heterotrophic dinoflagellate Pronoctiluca spp. (order Noctilucales)

In the present study, we investigated the dinoflagellate assemblages in the upper water column (< 150-m depth), focusing on the suboxic waters of the eastern Arabian Sea (EAS) along 68°E from 8°N to 21°N during the southwest monsoon 2020 (SWM-2020). Dinoflagellate abundance was higher in the upper water column (0-80-m depth, mean ± SD = 411 ± 903 cells L-1) compared to deeper waters (80-150-m depth, mean ± SD = 128 ± 216 cells L-1). Among 11 identified taxonomic dinoflagellate orders, Peridinales were predominant in the upper waters column (71%, mean ± SD = 285 ± 858 cells L-1). Noctilucales, particularly Pronoctiluca spp., dominated the deeper water column (78%, mean ± SD = 99 ± 223 cells L-1), especially at the southern stations (8-14°N, mean ± SD = 158 ± 270 cells L-1). During SWM-2020, a strong vertical gradient in Pronoctiluca with increased abundance in suboxic, colder waters (< 0.05 mL L-1, < 20 °C) coincided with the secondary chlorophyll maximum layers (12°N, SCMLs ~ 145 m, maximum 832 cells L-1). To compare this observation, samples were taken at 13°N during the winter monsoon (WM-2023), when the SCML peak was prominent (0.3 µg L-1) in suboxic waters. The results revealed an increased abundance of Pronoctiluca close to the SCML depth (~ 117 m) during WM. The canonical correspondence analysis revealed a positive correlation between SCML and Pronoctiluca, suggesting that Pronoctiluca relies on prey, i.e. low-light-adapted smaller phytoplankton. The higher abundance of Pronoctiluca compared to other oceanic regimes highlights the importance of assessing their crucial role in nutrient recycling and remineralisation within the suboxic environments of the EAS.

Distribution and sea-to-air fluxes of nitrous oxide and methane from a seasonally hypoxic coastal zone in the southeastern Arabian Sea

The seasonal variability, pathways, and sea-to-air fluxes of nitrous oxide (N2O) and methane (CH4) in the coastal environment, where coastal upwelling and mudbanks co-exist are presented based on the monthly time-series measurements from November 2021 to December 2022. Upwelling-driven hypoxic water's shoreward propagation and persistence were the major factors controlling the N2O concentrations, while the freshwater influx and sedimentary fluxes modulate CH4 concentrations. The N2O concentrations were high during the southwest monsoon (up to 35 nM; 19 ± 8 nM)), followed by spring inter-monsoon (up to 19 nM; 10 ± 5 nM), and lowest during the northeast monsoon (up to 13 nM; 8 ± 2 nM), whereas the CH4 levels were high during the spring inter-monsoon (8.4 to 65 nM), followed by southwest monsoon (6.8 to 53.1 nM) and relatively lower concentrations during the northeast monsoon (3.3 to 32.6 nM). The positive correlations of excess N2O with Apparent Oxygen Utilisation (AOU) and the sum of nitrate and nitrite (NOx) indicate that nitrification is the primary source of N2O in the mudbank regime. The negative correlation of CH4 concentrations with salinity indicates considerable input of CH4 through freshwater influx. CH4 exhibited a highly significant positive correlation with Chlorophyll-a throughout the study period. Furthermore, it displayed a statistically significant positive correlation with phosphate (PO43-) during the northeast monsoon while a strong negative correlation with PO43- during the spring inter-monsoon, pointing towards the role of aerobic CH4 production pathways in the mudbank regime. N2O and CH4 exhibited a contrasting seasonal pattern of sea-to-air fluxes, characterised by the highest N2O fluxes during the southwest monsoon (hypoxia) (13 ± 10 μM m-2 d-1), followed by spring inter-monsoon (12 ± 16 μM m-2 d-1), and the lowest during the northeast monsoon (0.6 ± 3 μM m-2 d-1). Conversely, the highest sea-to-air fluxes of CH4 were noticed during the spring inter-monsoon (74 ± 56 μM m-2 d-1), followed by the southwest monsoon (45 ± 35 μM m-2 d-1), and the lowest values during the northeast monsoon (19 ± 16 μM m-2d-1). Long-term time-series measurements will be invaluable in understanding the longer-term impacts of climate-driven variability on marine biogeochemical cycles in dynamic nearshore systems.

Uncultivated DPANN archaea are ubiquitous inhabitants of global oxygen-deficient zones with diverse metabolic potential

Archaea belonging to the DPANN (Diapherotrites, Parvarchaeota, Aenigmarchaeota, Nanoarchaeota, and Nanohaloarchaeota) superphylum have been found in an expanding number of environments and perform a variety of biogeochemical roles, including contributing to carbon, sulfur, and nitrogen cycling. Generally characterized by ultrasmall cell sizes and reduced genomes, DPANN archaea may form mutualistic, commensal, or parasitic interactions with various archaeal and bacterial hosts, influencing the ecology and functioning of microbial communities. While DPANN archaea reportedly comprise a sizeable fraction of the archaeal community within marine oxygen-deficient zone (ODZ) water columns, little is known about their metabolic capabilities in these ecosystems. We report 33 novel metagenome-assembled genomes (MAGs) belonging to the DPANN phyla Nanoarchaeota, Pacearchaeota, Woesearchaeota, Undinarchaeota, Iainarchaeota, and SpSt-1190 from pelagic ODZs in the Eastern Tropical North Pacific and the Arabian Sea. We find these archaea to be permanent, stable residents of all three major ODZs only within anoxic depths, comprising up to 1% of the total microbial community and up to 25%-50% of archaea as estimated from read mapping to MAGs. ODZ DPANN appear to be capable of diverse metabolic functions, including fermentation, organic carbon scavenging, and the cycling of sulfur, hydrogen, and methane. Within a majority of ODZ DPANN, we identify a gene homologous to nitrous oxide reductase. Modeling analyses indicate the feasibility of a nitrous oxide reduction metabolism for host-attached symbionts, and the small genome sizes and reduced metabolic capabilities of most DPANN MAGs suggest host-associated lifestyles within ODZs.

IMPORTANCE

Archaea from the DPANN (Diapherotrites, Parvarchaeota, Aenigmarchaeota, Nanoarchaeota, and Nanohaloarchaeota) superphylum have diverse metabolic capabilities and participate in multiple biogeochemical cycles. While metagenomics and enrichments have revealed that many DPANN are characterized by ultrasmall genomes, few biosynthetic genes, and episymbiotic lifestyles, much remains unknown about their biology. We report 33 new DPANN metagenome-assembled genomes originating from the three global marine oxygen-deficient zones (ODZs), the first from these regions. We survey DPANN abundance and distribution within the ODZ water column, investigate their biosynthetic capabilities, and report potential roles in the cycling of organic carbon, methane, and nitrogen. We test the hypothesis that nitrous oxide reductases found within several ODZ DPANN genomes may enable ultrasmall episymbionts to serve as nitrous oxide consumers when attached to a host nitrous oxide producer. Our results indicate DPANN archaea as ubiquitous residents within the anoxic core of ODZs with the potential to produce or consume key compounds.

Winter phytoplankton size classes in the Northeastern Arabian Sea based on in-situ and remote sensing methods

Phytoplankton size classes (PSCs) are important in marine ecosystems because they organise the food chain and trophic pathways, which determine the overall biological environment. Based on three FORV Sagar Sampada cruises, the current study provides changes in PSCs in the Northeastern Arabian Sea (NEAS; north of 18 N) during different phases of the Northeast Monsoon [NEM (November-February)]. During all three phases of NEM such as early (November), peak (December), and late (February), in-situ chlorophyll-a fractionation data revealed that nanoplankton (2-20 μm) predominated, followed by microplankton (>20 μm) and picoplankton (0.2-2.0 μm). This was primarily because winter convective mixing in the NEAS maintains only a moderate level of nutrients in the surface mixed layer, which is more conducive to the dominance of nanoplankton. Brewin et al. (2012) and Sahay et al. (2017) have satellite-based PSC estimation algorithms; the former was developed for the entire Indian Ocean, while the latter is a modification of the former for the Noctiluca bloom-infested NEAS, with a claim that such blooms are typical of the NEM. When current in-situ PSCs data were compared to algorithm-based NEM data, Brewin et al. (2012) revealed a more realistic PSCs contribution pattern, especially in oceanic waters, with nanoplankton predominating except during early NEM. But the PSCs data from Sahay et al. (2017) showed a high degree of variation from the in-situ data, demonstrating the dominance of pico- and microplankton and a notably small contribution from the nano phytoplankton. The current study showed that Sahay et al. (2017) is inferior to Brewin et al. (2012) at quantifying PSCs in the NEAS without Noctiluca blooms, and provided evidence to show that Noctiluca blooms are not a typical feature of the region during the NEM.

Autochthonous production contributes to the diet of wood-boring invertebrates in temperate shallow water

Marine wood-boring invertebrates rapidly fragment coarse woody debris in the sea. These wood borers have the ability to digest wood cellulose, but other potential food sources have been less investigated. To assess the contribution of each potential food source to the diet of wood borers, we traced seasonal and environmental changes in δ¹³C of shipworms cultured under the same experimental conditions and related these changes to variations in δ¹³C of potential food sources, i.e., wood log and particulate organic matter (POM) by using multiple linear regression models rather than the Bayesian mixing model. Based on the standardized partial regression coefficients in the model, it became clear that wood-derived organic carbon was the main carbon source for the teredinids, and POM also accounted for 37.9% of the teredinids' carbon source. Furthermore, we clarified variations in supplemental nitrogen sources for the teredinids: one species depended on both POM and wood log, whereas the other three species depended on either POM or wood log for their nitrogen source. δ¹³C values of another wood-boring bivalve of Martesia (Pholadidae) increase as it grows, which suggests that the bivalve switches its feeding strategy from xylophagous to filter feeding as it grows. Wood borers are known to accelerate the transfer of organic materials derived from wood logs to marine ecosystems. However, this study suggests that autochthonous production strongly contribute to the diet of marine wood borers, helping them to decompose wood logs in temperate shallow water.

A source of isotopically light organic carbon in a low-pH anoxic marine zone

Geochemical and stable isotope measurements in the anoxic marine zone (AMZ) off northern Chile during periods of contrasting oceanographic conditions indicate that microbial processes mediating sulfur and nitrogen cycling exert a significant control on the carbonate chemistry (pH, A_T, DIC and pCO₂) of this region. Here we show that in 2015, a large isotopic fractionation between DIC and POC, a DIC and N deficit in AMZ waters indicate the predominance of in situ dark carbon fixation by sulfur-driven autotrophic denitrification in addition to anammox. In 2018, however, the fractionation between DIC and POC was significantly lower, while the total alkalinity increased in the low-pH AMZ core, suggesting a predominance of heterotrophic processes. An isotope mass-balance model demonstrates that variations in the rates of sulfur- and nitrogen-mediated carbon fixation in AMZ waters contribute ~7–35% of the POC exported to deeper waters. Thus, dark carbon fixation should be included in assessments of future changes in carbon cycling and carbonate chemistry due to AMZ expansion.

Anoxic marine zones are expanding and intensifying with climate change. Here the authors show that microbial dark carbon fixation influences the carbonate system and the stable isotope composition in waters off Chile, contributing up to 35% of the organic carbon reaching the mesopelagic region.

Sources of organic matter and tracing of nutrient pollution in the coastal Bay of Bengal

Stable isotopic composition of carbon (δ¹³C_POM) and nitrogen (δ¹⁵N_POM) in the particulate organic matter (POM) is used to identify sources of organic carbon and nutrients using monthly time-series observation in the coastal Bay of Bengal (BoB). The hydrographic structure indicates that the coastal BoB is influenced by coastal upwelling during March-May, advection of peninsular river discharge during June to September and glacial (Ganges) river discharge during October to December due to reversing of East India Coastal Currents (EICC). C/N ratios in POM were mostly higher values than Redfield ratio in the study region indicating possible contribution of terrestrial origin. Enriched δ¹³C_POM were found during March-May associated with coastal upwelling indicating major contribution of POM from the in situ production while lower values were noticed during June to September followed by October to December indicating influence of terrestrial sources. δ¹⁵N_POM displayed strong inverse relation with salinity and linear relation with Chl-a suggesting that anthropogenic nutrients from the land increased coastal phytoplankton biomass. δ¹⁵N_POM linearly decreased with increase in distance from the coast and reached to the typical offshore value of 6-6.5‰ indicating that terrestrial nutrients influence was spread up to a distance of 15 to 20 km from the coast in the study region. Our study suggested that coastal waters are influenced by terrestrial/anthropogenic nutrients and its impact can be noticed up to 15 to 20 km from the coast and its impact on Biodiversity Beyond National Jurisdiction may be negligible than hitherto hypothesized.

On the natural spatio-temporal heterogeneity of South Pacific nitrous oxide

Nitrous oxide (N₂O) is a powerful greenhouse gas and ozone depleting substance, but its natural sources, especially marine emissions, are poorly constrained. Localized high concentrations have been observed in the oxygen minimum zones (OMZs) of the tropical Pacific but the impacts of El Niño cycles on this key source region are unknown. Here we show atmospheric monitoring station measurements in Samoa combined with atmospheric back-trajectories provide novel information on N₂O variability across the South Pacific. Remarkable elevations in Samoan concentrations are obtained in air parcels that pass over the OMZ. The data further reveal that average concentrations of these OMZ air parcels are augmented during La Niña and decrease sharply during El Niño. The observed natural spatial heterogeneities and temporal dynamics in marine N₂O emissions can confound attempts to develop future projections of this climatically active gas as low oxygen zones are predicted to expand and El Niño cycles change.

Ocean oxygen minimum zones (OMZs) are known to emit the powerful greenhouse gas N₂O, but global emission dynamics are not constrained. Here the authors use air trajectory analyses and find that air masses pick up N₂O as they pass over OMZs, and that overall concentrations are elevated during La Niña events.

Low oxygen eddies in the eastern tropical North Atlantic: Implications for N2O cycling

Nitrous oxide (N₂O) is a climate relevant trace gas, and its production in the ocean generally increases under suboxic conditions. The Atlantic Ocean is well ventilated, and unlike the major oxygen minimum zones (OMZ) of the Pacific and Indian Oceans, dissolved oxygen and N₂O concentrations in the Atlantic OMZ are relatively high and low, respectively. This study, however, demonstrates that recently discovered low oxygen eddies in the eastern tropical North Atlantic (ETNA) can produce N₂O concentrations much higher (up to 115 nmol L⁻¹) than those previously reported for the Atlantic Ocean, and which are within the range of the highest concentrations found in the open-ocean OMZs of the Pacific and Indian Oceans. N₂O isotope and isotopomer signatures, as well as molecular genetic results, also point towards a major shift in the N₂O cycling pathway in the core of the low oxygen eddy discussed here, and we report the first evidence for potential N₂O cycling via the denitrification pathway in the open Atlantic Ocean. Finally, we consider the implications of low oxygen eddies for bulk, upper water column N₂O at the regional scale, and point out the possible need for a reevaluation of how we view N₂O cycling in the ETNA.

Isotopocule analysis of biologically produced nitrous oxide in various environments

Natural abundance ratios of isotopocules, molecules that have the same chemical constitution and configuration, but that only differ in isotope substitution, retain a record of a compound's origin and reactions. A method to measure isotopocule ratios of nitrous oxide (N₂ O) has been established by using mass analysis of molecular ions and fragment ions. The method has been applied widely to environmental samples from the atmosphere, ocean, fresh water, soils, and laboratory-simulation experiments. Results show that isotopocule ratios, particularly the ¹⁵ N-site preference (difference between isotopocule ratios ¹⁴ N¹⁵ N¹⁶ O/¹⁴ N¹⁴ N¹⁶ O and ¹⁵ N¹⁴ N¹⁶ O/¹⁴ N¹⁴ N¹⁶ O), have a wide range that depends on their production and consumption processes. Observational and laboratory studies of N₂ O related to biological processes are reviewed and discussed to elucidate complex material cycles of this trace gas, which causes global warming and stratospheric ozone depletion. © 2015 Wiley Periodicals, Inc. Mass Spec Rev 36:135-160, 2017.

Reduction of the Powerful Greenhouse Gas N2O in the South-Eastern Indian Ocean

Nitrous oxide (N₂O) is a powerful greenhouse gas and a key catalyst of stratospheric ozone depletion. Yet, little data exist about the sink and source terms of the production and reduction of N₂O outside the well-known oxygen minimum zones (OMZ). Here we show the presence of functional marker genes for the reduction of N₂O in the last step of the denitrification process (nitrous oxide reductase genes; nosZ) in oxygenated surface waters (180–250 O₂ μmol.kg^-1) in the south-eastern Indian Ocean. Overall copy numbers indicated that nosZ genes represented a significant proportion of the microbial community, which is unexpected in these oxygenated waters. Our data show strong temperature sensitivity for nosZ genes and reaction rates along a vast latitudinal gradient (32°S-12°S). These data suggest a large N₂O sink in the warmer Tropical waters of the south-eastern Indian Ocean. Clone sequencing from PCR products revealed that most denitrification genes belonged to Rhodobacteraceae. Our work highlights the need to investigate the feedback and tight linkages between nitrification and denitrification (both sources of N₂O, but the latter also a source of bioavailable N losses) in the understudied yet strategic Indian Ocean and other oligotrophic systems.

From the ground up: global nitrous oxide sources are constrained by stable isotope values

Rising concentrations of nitrous oxide (N₂O) in the atmosphere are causing widespread concern because this trace gas plays a key role in the destruction of stratospheric ozone and it is a strong greenhouse gas. The successful mitigation of N₂O emissions requires a solid understanding of the relative importance of all N₂O sources and sinks. Stable isotope ratio measurements (δ¹⁵N-N₂O and δ¹⁸O-N₂O), including the intramolecular distribution of ¹⁵N (site preference), are one way to track different sources if they are isotopically distinct. ‘Top-down’ isotope mass-balance studies have had limited success balancing the global N₂O budget thus far because the isotopic signatures of soil, freshwater, and marine sources are poorly constrained and a comprehensive analysis of global N₂O stable isotope measurements has not been done. Here we used a robust analysis of all available in situ measurements to define key global N₂O sources. We showed that the marine source is isotopically distinct from soil and freshwater N₂O (the continental source). Further, the global average source (sum of all natural and anthropogenic sources) is largely controlled by soils and freshwaters. These findings substantiate past modelling studies that relied on several assumptions about the global N₂O cycle. Finally, a two-box-model and a Bayesian isotope mixing model revealed marine and continental N₂O sources have relative contributions of 24–26% and 74–76% to the total, respectively. Further, the Bayesian modeling exercise indicated the N₂O flux from freshwaters may be much larger than currently thought.

Influence of environmental factors on net N₂ and N₂O production in sediment of freshwater rivers

Denitrification is an important N removal process in aquatic systems but is also implicated as a potential source of global N₂O emissions. However, the key factors controlling this process as well as N₂O emissions remain unclear. In this study, we identified the main factors that regulate the production of net N₂ and N₂O in sediments collected from rivers with a large amount of sewage input in the Taihu Lake region. Net N₂ and N₂O production were strongly associated with the addition of NO₃(-)-N and NH₄(+)-N. Specifically, NO₃(-)-N controlled net N₂ production following Michaelis-Menten kinetics. The maximum rate of net N₂ production (V max) was 116.3 μmol N2-N m(-2) h(-1), and the apparent half-saturation concentration (k m) was 0.65 mg N L(-1). N₂O to N₂ ratios increased from 0.18 ± 0.03 to 0.68 ± 0.16 with the addition of NO₃(-)-N, suggesting that increasing NO₃(-)-N concentrations favored the production of N₂O more than N₂. The addition of acetate enhanced net N₂ production and N₂O to N₂ ratios, but the ratios decreased by about 59.5% when acetate concentrations increased from 50 to 100 mg C L(-1), suggesting that the increase of N₂O to N₂ ratios had more to do with the net N₂ production rate rather than acetate addition in this experiment. The addition of Cl(-) did not affect the net N₂ production rates, but significantly enhanced N₂O to N₂ ratios (the ratios increased from 0.02 ± 0.00 to 0.10 ± 0.00), demonstrating that the high salinity effect might have a significant regional effect on N₂O production. Our results suggest that the presence of N-enriching sewage discharges appear to stimulate N removal but also increase N₂O to N₂ ratios.

Proper interpretation of dissolved nitrous oxide isotopes, production pathways, and emissions requires a modelling approach

Stable isotopes ([Formula: see text]15N and [Formula: see text]18O) of the greenhouse gas N2O provide information about the sources and processes leading to N2O production and emission from aquatic ecosystems to the atmosphere. In turn, this describes the fate of nitrogen in the aquatic environment since N2O is an obligate intermediate of denitrification and can be a by-product of nitrification. However, due to exchange with the atmosphere, the [Formula: see text] values at typical concentrations in aquatic ecosystems differ significantly from both the source of N2O and the N2O emitted to the atmosphere. A dynamic model, SIDNO, was developed to explore the relationship between the isotopic ratios of N2O, N2O source, and the emitted N2O. If the N2O production rate or isotopic ratios vary, then the N2O concentration and isotopic ratios may vary or be constant, not necessarily concomitantly, depending on the synchronicity of production rate and source isotopic ratios. Thus prima facie interpretation of patterns in dissolved N2O concentrations and isotopic ratios is difficult. The dynamic model may be used to correctly interpret diel field data and allows for the estimation of the gas exchange coefficient, N2O production rate, and the production-weighted [Formula: see text] values of the N2O source in aquatic ecosystems. Combining field data with these modelling efforts allows this critical piece of nitrogen cycling and N2O flux to the atmosphere to be assessed.

Denitrification potential of the Northern Arabian Gulf--an experimental study

The study aims to establish denitrification potential of the Northern Arabian Gulf (NAG), as nitrogen critically affects the ocean productivity, obliterates acidity, oxidative capacity and radiative transfer capability of atmosphere. The experimental study was conducted by taking cores from intertidal zones from two different sites in North and South, referred as sites N and S; representing two distinct environmental milieu. The experiment was conducted in controlled laboratory conditions simulating the tidal cycles. Multiple cores were taken and loaded with seawater with different N concentrations, the redox potential was established for each condition. Redox potential was significantly lower at 10 cm depth compared to the surface in all cores (P < 0.001). The redox potential at surface and at 10 cm depth was significantly lower at site S compared to site N (P < 0.001; F = 714.2), suggesting anaerobic sediments at site S. Effects of nitrate spiked seawater on denitrification under nonflooded and flooded conditions at the two sites were also studied. Three-way ANOVA analysis indicated that site, nitrate concentration, and flooding had significant main and interactive effects on the rate of denitrification. The results suggest that under ambient nitrate concentrations (0.03 mg NO(3)-N l(-1)), 6.3 ± 2.1 g NO(3)-N ha day can be denitrified by inter-tidal zone sediments. At a nitrate concentration of 1 mg NO(3)-N l(-1), 92 ± 16 g NO(3)-N ha day may be denitrified whilst at a very high nitrate load of 10 mg NO(3)-N l(-1), the sediments may attain a rate of denitrification close to 404 ± 78 g NO(3)-N ha day.

Nitrous oxide (N2O) emission from aquaculture: a review

Nitrous oxide (N(2)O) is an important greenhouse gas (GHG) which has a global warming potential 310 times that of carbon dioxide (CO(2)) over a hundred year lifespan. N(2)O is generated during microbial nitrification and denitrification, which are common in aquaculture systems. To date, few studies have been conducted to quantify N(2)O emission from aquaculture. Additionally, very little is known with respect to the microbial pathways through which N(2)O is formed in aquaculture systems. This review suggests that aquaculture can be an important anthropogenic source of N(2)O emission. The global N(2)O-N emission from aquaculture in 2009 is estimated to be 9.30 × 10(10) g, and will increase to 3.83 × 10(11)g which could account for 5.72% of anthropogenic N(2)O-N emission by 2030 if the aquaculture industry continues to increase at the present annual growth rate (about 7.10%). The possible mechanisms and various factors affecting N(2)O production are summarized, and two possible methods to minimize N(2)O emission, namely aquaponic and biofloc technology aquaculture, are also discussed. The paper concludes with future research directions.

Isotopic signature of N(2)O produced by marine ammonia-oxidizing archaea

The ocean is an important global source of nitrous oxide (N(2)O), a greenhouse gas that contributes to stratospheric ozone destruction. Bacterial nitrification and denitrification are thought to be the primary sources of marine N(2)O, but the isotopic signatures of N(2)O produced by these processes are not consistent with the marine contribution to the global N(2)O budget. Based on enrichment cultures, we report that archaeal ammonia oxidation also produces N(2)O. Natural-abundance stable isotope measurements indicate that the produced N(2)O had bulk δ(15)N and δ(18)O values higher than observed for ammonia-oxidizing bacteria but similar to the δ(15)N and δ(18)O values attributed to the oceanic N(2)O source to the atmosphere. Our results suggest that ammonia-oxidizing archaea may be largely responsible for the oceanic N(2)O source.

Microbial nitrogen cycling processes in oxygen minimum zones

Oxygen minimum zones (OMZs) harbor unique microbial communities that rely on alternative electron acceptors for respiration. Conditions therein enable an almost complete nitrogen (N) cycle and substantial N-loss. N-loss in OMZs is attributable to anammox and heterotrophic denitrification, whereas nitrate reduction to nitrite along with dissimilatory nitrate reduction to ammonium are major remineralization pathways. Despite virtually anoxic conditions, nitrification also occurs in OMZs, converting remineralized ammonium to N-oxides. The concurrence of all these processes provides a direct channel from organic N to the ultimate N-loss, whereas most individual processes are likely controlled by organic matter. Many microorganisms inhabiting the OMZs are capable of multiple functions in the N- and other elemental cycles. Their versatile metabolic potentials versus actual activities present a challenge to ecophysiological and biogeochemical measurements. These challenges need to be tackled before we can realistically predict how N-cycling in OMZs, and thus oceanic N-balance, will respond to future global perturbations.

Isotopologue enrichment factors of N(2)O reduction in soils

Isotopic signatures can be used to study sink and source processes of N(2)O, but the success of this approach is limited by insufficient knowledge on the isotope fractionation factors of the various reaction pathways. We investigated isotope enrichment factors of the N(2)O-to-N(2) step of denitrification (epsilon) in two arable soils, a silt-loam Haplic Luvisol and a sandy Gleyic Podzol. In addition to the epsilon of (18)O (epsilon(18O)) and of average (15)N (epsilon(bulk)), the epsilon of the (15)N site preference within the linear N(2)O molecule (epsilon(SP)) was also determined. Soils were anaerobically incubated in gas-tight bottles with N(2)O added to the headspace to induce N(2)O reduction. Pre-treatment included the removal of NO(3) (-) to prevent N(2)O production. Gas samples were collected regularly to determine the dynamics of N(2)O reduction, the time course of the isotopic signatures of residual N(2)O, and the associated isotope enrichment factors. To vary reduction rates and associated fractionation factors, several treatments were established including two levels of initial N(2)O concentration and anaerobic pre-incubation with or without addition of N(2)O. N(2)O reduction rates were affected by the soil type and initial N(2)O concentration. The epsilon(18O) and epsilon(bulk) ranged between -13 and -20 per thousand, and between -5 and -9 per thousand, respectively. Both quantities were more negative in the Gleyic Podzol. The epsilon of the central N position (epsilon(alpha)) was always larger than that of the peripheral N-position (epsilon(beta)), giving epsilon(SP) of -4 to -8 per thousand. The ranges and variation patterns of epsilon were comparable with those from previous static incubation studies with soils. Moreover, we found a relatively constant ratio between epsilon(18O) and epsilon(bulk) which is close to the default ratio of 2.5 that had been previously suggested. The fact that different soils exhibited comparable epsilon under certain conditions suggests that these values could serve to identify N(2)O reduction from the isotopic fingerprints of N(2)O emitted from any soil.

Denitrifying bacterial community composition changes associated with stages of denitrification in oxygen minimum zones

Denitrification in the ocean is a major sink for fixed nitrogen in the global N budget, but the process is geographically restricted to a few oceanic regions, including three oceanic oxygen minimum zones (OMZ) and hemipelagic sediments worldwide. Here, we describe the diversity and community composition of microbes responsible for denitrification in the OMZ using polymerase chain reaction, sequence and fragment analysis of clone libraries of the signature genes (nirK and nirS) that encode the enzyme nitrite reductase, responsible for key denitrification transformation steps. We show that denitrifying assemblages vary in space and time and exhibit striking changes in diversity associated with the progression of denitrification from initial anoxia through nitrate depletion. The initial denitrifying assemblage is highly diverse, but succession on the scale of 3-12 days leads to a much less diverse assemblage and dominance by one or a few phylotypes. This progression occurs in the natural environment as well as in enclosed incubations. The emergence of dominants from a vast reservoir of rare types has implications for the maintenance of diversity of the microbial population and suggests that a small number of microbial dominants may be responsible for the greatest rates of transformations involving nitrous oxide and global fixed nitrogen loss. Denitrifying blooms, driven by a few types responding to episodic environmental changes and distributed unevenly in time and space, are consistent with the sampling effect model of diversity-function relationships. Canonical denitrification thus appears to have important parallels with both primary production and nitrogen fixation, which are typically dominated by regionally and temporally restricted blooms that account for a disproportionate share of these processes worldwide.

The 18O signature of biogenic nitrous oxide is determined by O exchange with water

To effectively mitigate emissions of the greenhouse gas nitrous oxide (N(2)O) it is essential to understand the biochemical pathways by which it is produced. The (18)O signature of N(2)O is increasingly used to characterize these processes. However, assumptions on the origin of the O atom and resultant isotopic composition of N(2)O that are based on reaction stoichiometry may be questioned. In particular, our deficient knowledge on O exchange between H(2)O and nitrogen oxides during N(2)O production complicates the interpretation of the (18)O signature of N(2)O.Here we studied O exchange during N(2)O formation in soil, using a novel combination of (18)O and (15)N tracing. Twelve soils were studied, covering soil and land-use variability across Europe. All soils demonstrated the significant presence of O exchange, as incorporation of O from (18)O-enriched H(2)O into N(2)O exceeded their maxima achievable through reaction stoichiometry. Based on the retention of the enrichment ratio of (18)O and (15)N of NO(3)(-) into N(2)O, we quantified O exchange during denitrification. Up to 97% (median 85%) of the N(2)O-O originated from H(2)O instead of from the denitrification substrate NO(3)(-).We conclude that in soil, the main source of atmospheric N(2)O, the (18)O signature of N(2)O is mainly determined by H(2)O due to O exchange between nitrogen oxides and H(2)O. This also challenges the assumption that the O of N(2)O originates from O(2) and NO(3)(-), in ratios reflecting reaction stoichiometry.

Metabolism of Inorganic N Compounds by Ammonia-Oxidizing Bacteria

Ammonia oxidizing bacteria extract energy for growth from the oxidation of ammonia to nitrite. Ammonia monooxygenase, which initiates ammonia oxidation, remains enigmatic given the lack of purified preparations. Genetic and biochemical studies support a model for the enzyme consisting of three subunits and metal centers of copper and iron. Knowledge of hydroxylamine oxidoreductase, which oxidizes hydroxylamine formed by ammonia monooxygenase to nitrite, is informed by a crystal structure and detailed spectroscopic and catalytic studies. Other inorganic nitrogen compounds, including NO, N2O, NO2, and N2 can be consumed and/or produced by ammonia-oxidizing bacteria. NO and N2O can be produced as byproducts of hydroxylamine oxidation or through nitrite reduction. NO2 can serve as an alternative oxidant in place of O2 in some ammonia-oxidizing strains. Our knowledge of the diversity of inorganic N metabolism by ammonia-oxidizing bacteria continues to grow. Nonetheless, many questions remain regarding the enzymes and genes involved in these processes and the role of these pathways in ammonia oxidizers.

Estimation of pathways of the production of greenhouse gases in the tropical swamp forest in Thailand by stable isotope investigation

Dynamics of greenhouse gases (N(2)O and CH(4)) with the dry-wet cycle along with the variation of oxidation-reduction boundaries were investigated in the tropical wetland in monsoon Asia. It was clarified that the production of N(2)O and CH(4) was closely related to the development of a redox boundary in the Bang Nara River systems. An intermittent increase in N(2)O was observed at the beginning of the rainy season, when a large amount of easily decomposable organic matter was introduced into the river. After 10 days, when dissolved oxygen was consumed completely at the middle reaches, the emission of CH(4) became maximal due to the possible occurrence of denitrification. The distribution of stable isotope ratios in N(2)O clearly demonstrated that nitrification is the major process for its production. Furthermore, the production of N(2)O in this study area was found to vary in time and space with changes in the redox boundary along the water flow.

Isotope fractionation factors of N2O diffusion

Isotopic signatures of N2O are increasingly used to constrain the total global flux and the relative contribution of nitrification and denitrification to N2O emissions. Interpretation of isotopic signatures of soil-emitted N2O can be complicated by the isotopic effects of gas diffusion. The aim of our study was to measure the isotopic fractionation factors of diffusion for the isotopologues of N2O and to estimate the potential effect of diffusive fractionation during N2O fluxes from soils using simple simulations. Diffusion experiments were conducted to monitor isotopic signatures of N2O in reservoirs that lost N2O by defined diffusive fluxes. Two different mathematical approaches were used to derive diffusive isotope fractionation factors for 18O (epsilon18O), average 15N (epsilonbulk) and 15N of the central (alpha(-)) and peripheral (beta(-)) position within the linear N2O molecule (epsilon15Nalpha, epsilon15Nbeta). The measured epsilon18O was -7.79 +/- 0.27 per thousand and thus higher than the theoretical value of -8.7 per thousand. Conversely, the measured epsilonbulk (-5.23 +/- 0.27 per thousand) was lower than the theoretical value (-4.4 per thousand). The measured site-specific 15N fractionation factors were not equal, giving a difference between epsilon15Nalpha and epsilon15Nbeta (epsilonSP) of 1.55 +/- 0.28 per thousand. Diffusive fluxes of the N2O isotopologues from the soil pore space to the atmosphere were simulated, showing that isotopic signatures of N2O source pools and emitted N2O can be substantially different during periods of non-steady state fluxes. Our results show that diffusive isotope fractionation should be taken into account when interpreting natural abundance isotopic signatures of N2O fluxes from soils.

Ammonia-oxidizing beta-proteobacteria from the oxygen minimum zone off northern Chile

The composition of ammonia-oxidizing bacteria from the beta-Proteobacteria subclass (betaAOB) was studied in the surface and upper-oxycline oxic waters (2- to 50-m depth, approximately 200 to 44 microM O(2)) and within the oxygen minimum zone (OMZ) suboxic waters (50- to 400-m depth, < or =10 microM O(2)) of the eastern South Pacific off northern Chile. This study was carried out through cloning and sequencing of genes coding for 16S rRNA and the ammonia monooxygenase enzyme active subunit (amoA). Sequences affiliated with Nitrosospira-like cluster 1 dominated the 16S rRNA gene clone libraries constructed from both oxic and suboxic waters. Cluster 1 consists exclusively of yet-uncultivated betaAOB from marine environments. However, a single clone, out of 224 obtained from the OMZ, was found to belong to Nitrosospira lineage cluster 0. To our knowledge, cluster 0 sequences have been derived from betaAOB isolated only from sand, soil, and freshwater environments. Sequences in clone libraries of the amoA gene from the surface and upper oxycline could be grouped in a marine subcluster, also containing no cultured representatives. In contrast, all 74 amoA sequences originating from the OMZ were either closely affiliated with cultured Nitrosospira spp. from clusters 0 and 2 or with other yet-uncultured betaAOB from soil and an aerated-anoxic Orbal process waste treatment plant. Our results reveal the presence of Nitrosospira-like betaAOB in both oxic and suboxic waters associated with the OMZ but with a clear community shift at the functional level (amoA) along the strong oxygen gradient.

Simulating estuarine nitrous oxide production by means of a dynamic model

We describe a dynamic model developed from a commercially available modeling package (ECoS-III) to simulate estuarine dissolved inorganic nitrogen (DIN) dynamics, and consequent N(2)O production and atmospheric flux on the timescale of tidal cycles. Simulated model state variables were NH(4)(+), NO(3)(-) and N(2)O concentrations, and salinity. Model outputs were evaluated through comparison with summer field data for the Tyne estuary, UK. The model adequately reproduced the observed axial profiles of NH(4)(+), NO(3)(-) and N(2)O concentrations. Nitrification was shown to be the dominant N(2)O source and estimates of the ratios nitrification to DIN load and N(2)O emission to DIN load are considerably lower than the corresponding values adopted in global scale models of estuarine N(2)O emissions based on DIN transformations. Hence our results are consistent with the requirement imposed by atmospheric N(2)O growth rate constraints that the amount of atmospheric N(2)O arising from agriculturally related sources, including estuarine transformations of N, be revised downward.

The calibration of the intramolecular nitrogen isotope distribution in nitrous oxide measured by isotope ratio mass spectrometry

Two alternative approaches for the calibration of the intramolecular nitrogen isotope distribution in nitrous oxide using isotope ratio mass spectrometry have yielded a difference in the 15N site preference (defined as the difference between the delta15N of the central and end position nitrogen in NNO) of tropospheric N2O of almost 30 per thousand. One approach is based on adding small amounts of labeled 15N2O to the N2O reference gas and tracking the subsequent changes in m/z 30, 31, 44, 45 and 46, and this yields a 15N site preference of 46.3 +/- 1.4 per thousand for tropospheric N2O. The other involves the synthesis of N2O by thermal decomposition of isotopically characterized ammonium nitrate and yields a 15N site preference of 18.7 +/- 2.2 per thousand for tropospheric N2O. Both approaches neglect to fully account for isotope effects associated with the formation of NO+ fragment ions from the different isotopic species of N2O in the ion source of a mass spectrometer. These effects vary with conditions in the ion source and make it impossible to reproduce a calibration based on the addition of isotopically enriched N2O on mass spectrometers with different ion source configurations. These effects have a much smaller impact on the comparison of a laboratory reference gas with N2O synthesized from isotopically characterized ammonium nitrate. This second approach was successfully replicated and leads us to advocate the acceptance of the site preference value 18.7 +/- 2.2 per thousand for tropospheric N2O as the provisional community standard until further independent calibrations are developed and validated. We present a technique for evaluating the isotope effects associated with fragment ion formation and revised equations for converting ion signal ratios into isotopomer ratios.

Nitrous oxide nitrification and denitrification 15N enrichment factors from Amazon forest soils

The isotopic signatures of 15N and 18O in N2O emitted from tropical soils vary both spatially and temporally, leading to large uncertainty in the overall tropical source signature and thereby limiting the utility of isotopes in constraining the global N2O budget. Determining the reasons for spatial and temporal variations in isotope signatures requires that we know the isotope enrichment factors for nitrification and denitrification, the two processes that produce N2O in soils. We have devised a method for measuring these enrichment factors using soil incubation experiments and report results from this method for three rain forest soils collected in the Brazilian Amazon: soil with differing sand and clay content from the Tapajos National Forest (TNF) near Santarém, Pará, and Nova Vida Farm, Rondônia. The 15N enrichment factors for nitrification and denitrification differ with soil texture and site: -111 per thousand +/- 12 per thousand and -31 per thousand +/- 11 per thousand for a clay-rich Oxisol (TNF), -102 per thousand +/- 5 per thousand and -45 per thousand +/- 5 per thousand for a sandier Ultisol (TNF), and -10.4 per thousand +/- 3.5 per thousand (enrichment factor for denitrification) for another Ultisol (Nova Vida) soil, respectively. We also show that the isotopomer site preference (delta15Nalpha - delta15Nbeta, where alpha indicates the central nitrogen atom and beta the terminal nitrogen atom in N2O) may allow differentiation between processes of production and consumption of N2O and can potentially be used to determine the contributions of nitrification and denitrification. The site preferences for nitrification and denitrification from the TNF-Ultisol incubated soils are: 4.2 per thousand +/- 8.4 per thousand and 31.6 per thousand +/- 8.1 per thousand, respectively. Thus, nitrifying and denitrifying bacteria populations under the conditions of our study exhibit significantly different 15N site preference fingerprints. Our data set strongly suggests that N2O isotopomers can be used in concert with traditional N2O stable isotope measurements as constraints to differentiate microbial N2O processes in soil and will contribute to interpretations of the isotopic site preference N2O values found in the free troposphere.

A stress surveillance system based on calcium and nitric oxide in marine diatoms

Diatoms are an important group of eukaryotic phytoplankton, responsible for about 20% of global primary productivity. Study of the functional role of chemical signaling within phytoplankton assemblages is still in its infancy although recent reports in diatoms suggest the existence of chemical-based defense strategies. Here, we demonstrate how the accurate perception of diatom-derived reactive aldehydes can determine cell fate in diatoms. In particular, the aldehyde (2E,4E/Z)-decadienal (DD) can trigger intracellular calcium transients and the generation of nitric oxide (NO) by a calcium-dependent NO synthase-like activity, which results in cell death. However, pretreatment of cells with sublethal doses of aldehyde can induce resistance to subsequent lethal doses, which is reflected in an altered calcium signature and kinetics of NO production. We also present evidence for a DD–derived NO-based intercellular signaling system for the perception of stressed bystander cells. Based on these findings, we propose the existence of a sophisticated stress surveillance system in diatoms, which has important implications for understanding the cellular mechanisms responsible for acclimation versus death during phytoplankton bloom successions.

Aldehydes released by marine diatoms trigger intracellular calcium transients and nitric oxide generation, which results in cell death.

Intramolecular distribution of stable nitrogen and oxygen isotopes of nitrous oxide emitted during coal combustion

The intramolecular distribution of stable isotopes in nitrous oxide that is emitted during coal combustion was analyzed using an isotopic ratio mass spectrometer equipped with a modified ion collector system (IRMS). The coal was combusted in a test furnace fitted with a single burner and the flue gases were collected at the furnace exit following removal of SO(x), NO(x), and H2O in order to avoid the formation of artifact nitrous oxide. The nitrous oxide in the flue gases proved to be enriched in 15N relative to the fuel coal. In air-staged combustion experiments, the staged air ratio was controlled over a range of 0 (unstaged combustion), 20%, and 30%. As the staged air ratio increased, the delta15N and delta18O of the nitrous oxide in the flue gases became depleted. The central nitrogen of the nitrous oxide molecule, N(alpha), was enriched in 15N relative to that occupying the end position of the molecule, N(beta), but this preference, expressed as delta15N(alpha)-delta15N(beta), decreased with the increase in the staged air ratio. Thermal decomposition and hydrogen reduction experiments carried out using a tube reactor allowed qualitative estimates of the kinetic isotope effects that occurred during the decomposition of the nitrous oxide and quantitative estimates of the extent to which the nitrous oxide had decomposed. The site preference of nitrous oxide increased with the extent of the decomposition reactions. Assuming that no site preference exists in nitrous oxide before decomposition, the behavior of nitrous oxide in the test combustion furnace was analyzed using the Rayleigh equation based on a single distillation model. As a result, the extent of decomposition of nitrous oxide was estimated as 0.24-0.26 during the decomposition reaction governed by the thermal decomposition and as 0.35-0.38 during the decomposition reaction governed by the hydrogen reduction in staged combustion. The intramolecular distribution of nitrous oxide can be a valuable parameter to estimate the extent of decomposition reaction and to understand the reaction pathway of nitrous oxide at the high temperature.

Ubiquity and diversity of ammonia-oxidizing archaea in water columns and sediments of the ocean

Nitrification, the microbial oxidation of ammonia to nitrite and nitrate, occurs in a wide variety of environments and plays a central role in the global nitrogen cycle. Catalyzed by the enzyme ammonia monooxygenase, the ability to oxidize ammonia was previously thought to be restricted to a few groups within the beta- and gamma-Proteobacteria. However, recent metagenomic studies have revealed the existence of unique ammonia monooxygenase alpha-subunit (amoA) genes derived from uncultivated, nonextremophilic Crenarchaeota. Here, we report molecular evidence for the widespread presence of ammonia-oxidizing archaea (AOA) in marine water columns and sediments. Using PCR primers designed to specifically target archaeal amoA, we find AOA to be pervasive in areas of the ocean that are critical for the global nitrogen cycle, including the base of the euphotic zone, suboxic water columns, and estuarine and coastal sediments. Diverse and distinct AOA communities are associated with each of these habitats, with little overlap between water columns and sediments. Within marine sediments, most AOA sequences are unique to individual sampling locations, whereas a small number of sequences are evidently cosmopolitan in distribution. Considering the abundance of nonextremophilic archaea in the ocean, our results suggest that AOA may play a significant, but previously unrecognized, role in the global nitrogen cycle.

Nitrogen isotopomer site preference of N2O produced by Nitrosomonas europaea and Methylococcus capsulatus Bath

The relative importance of individual microbial pathways in nitrous oxide (N(2)O) production is not well known. The intramolecular distribution of (15)N in N(2)O provides a basis for distinguishing biological pathways. Concentrated cell suspensions of Methylococcus capsulatus Bath and Nitrosomonas europaea were used to investigate the site preference of N(2)O by microbial processes during nitrification. The average site preference of N(2)O formed during hydroxylamine oxidation by M. capsulatus Bath (5.5 +/- 3.5 per thousand) and N. europaea (-2.3 +/- 1.9 per thousand) and nitrite reduction by N. europaea (-8.3 +/- 3.6 per thousand) differed significantly (ANOVA, f((2,35)) = 247.9, p = 0). These results demonstrate that the mechanisms for hydroxylamine oxidation are distinct in M. capsulatus Bath and N. europaea. The average delta(18)O-N(2)O values of N(2)O formed during hydroxylamine oxidation for M. capsulatus Bath (53.1 +/- 2.9 per thousand) and N. europaea (-23.4 +/- 7.2 per thousand) and nitrite reduction by N. europaea (4.6 +/- 1.4 per thousand) were significantly different (ANOVA, f((2,35)) = 279.98, p = 0). Although the nitrogen isotope value of the substrate, hydroxylamine, was similar in both cultures, the observed fractionation (delta(15)N) associated with N(2)O production via hydroxylamine oxidation by M. capsulatus Bath and N. europaea (-2.3 and 26.0 per thousand, respectively) provided evidence that differences in isotopic fractionation were associated with these two organisms. The site preferences in this study are the first measured values for isolated microbial processes. The differences in site preference are significant and indicate that isotopomers provide a basis for apportioning biological processes producing N(2)O.

Monsoon-driven export fluxes and early diagenesis of particulate nitrogen and its δ15N across the Somalia margin

Settling nitrogen fluxes intercepted by sediment traps on the mid-slope and in the deep basin off Somalia show a consistent annual range of 3.4 ± 0.2‰ in their stable isotope composition. Seasonal minima in δ15N of 3.7‰ are associated with the moderate N fluxes derived from coastally upwelled water, which is rapidly carried offshore along eddy margins passing over the mooring sites during the SW monsoon (June–September). Coastal upwelling, offshore transport and deep wind mixing cease at the end of the SW monsoon, leading to enhanced utilization of the up to 20 μM of NO3− in the photic layer, maxima in the N export flux, and an increasing δ15N by Rayleigh distillation. Yet as stratification develops, nutrient exhaustion follows and export production collapses as the δ15N increases to over 7‰. Cyanobacterial N2 fixation probably diminishes the δ15N by 0.4–1.6‰ during the autumn intermonsoon (November–December) when settling N fluxes are lowest. Nutrient utilization remains high during the NE monsoon (January–March), when nutrient entrainment by deep wind mixing results in enhanced N export with maxima in δ15N of up to 7.4‰. Annual N fluxes have virtually the same δ15N of 6.0‰ in all traps despite considerable differences in both N flux and δ15N between the traps during the year and at different depths. In comparison with the annual δ15N of 6.0‰ arriving on the sea floor, core-top sediments are enriched by +0.6‰ on the upper slope (at 487 m) increasing to +2.9‰ in the deep basin (at 4040 m), whereas the N sediment burial efficiency declines from about 17% to 3%. It appears that the extent of oxic decomposition at the sediment-water interface is the most likely cause of such isotope enrichment. Similar positive gradients in δ15N with bottom depth have been reported from other continental margin transects and are generally attributed to increased nutrient utilization in the photic ocean with distance offshore. As for Somalia, nitrogen isotope fractionation as a result of oxic decomposition on the bottom rather than nutrient utilization at the ocean surface may account for the observed increase of sedimentary δ15N down continental margins in general.

Wheat leaves emit nitrous oxide during nitrate assimilation

Nitrous oxide (N(2)O) is a key atmospheric greenhouse gas that contributes to global climatic change through radiative warming and depletion of stratospheric ozone. In this report, N(2)O flux was monitored simultaneously with photosynthetic CO(2) and O(2) exchanges from intact canopies of 12 wheat seedlings. The rates of N(2)O-N emitted ranged from <2 pmol x m(-2) x s(-1) when NH(4)(+) was the N source, to 25.6 +/- 1.7 pmol x m(-2) x s(-1) (mean +/- SE, n = 13) when the N source was shifted to NO(3)(-). Such fluxes are among the smallest reported for any trace gas emitted by a higher plant. Leaf N(2)O emissions were correlated with leaf nitrate assimilation activity, as measured by using the assimilation quotient, the ratio of CO(2) assimilated to O(2) evolved. (15)N isotopic signatures on N(2)O emitted from leaves supported direct N(2)O production by plant NO(3)(-) assimilation and not N(2)O produced by microorganisms on root surfaces and emitted in the transpiration stream. In vitro production of N(2)O by both intact chloroplasts and nitrite reductase, but not by nitrate reductase, indicated that N(2)O produced by leaves occurred during photoassimilation of NO(2)(-) in the chloroplast. Given the large quantities of NO(3)(-) assimilated by plants in the terrestrial biosphere, these observations suggest that formation of N(2)O during NO(2)(-) photoassimilation could be an important global biogenic N(2)O source.

Increased marine production of N2O due to intensifying anoxia on the Indian continental shelf

Eutrophication of surface waters and hypoxia in bottom waters has been increasing in many coastal areas, leading to very large depletions of marine life in the affected regions. These areas of high surface productivity and low bottom-water oxygen concentration are caused by increasing runoff of nutrients from land. Although the local ecological and socio-economic effects have received much attention, the potential contribution of increasing hypoxia to global-change phenomena is unknown. Here we report the intensification of one of the largest low-oxygen zones in the ocean, which develops naturally over the western Indian continental shelf during late summer and autumn. We also report the highest accumulations yet observed of hydrogen sulphide (H2S) and nitrous oxide (N2O) in open coastal waters. Increased N2O production is probably caused by the addition of anthropogenic nitrate and its subsequent denitrification, which is favoured by hypoxic conditions. We suggest that a global expansion of hypoxic zones may lead to an increase in marine production and emission of N2O, which, as a potent greenhouse gas, could contribute significantly to the accumulation of radiatively active trace gases in the atmosphere.