Self-organization of dissolved organic matter to micelle-like microparticles in river water

Effects of Cu(II)-DOM complexation on DOM degradation: Insights from spectroscopic evidence

The fate of dissolved organic matter (DOM) is primarily governed by its sources, degradation, and transformation processes within the environment. However, the influence of metal-DOM complexation on DOM degradation remains ambiguous. In this study, controlled laboratory experiments were conducted using Cu(II) and natural water from the Duliujian River and the Beidagang Wetland to examine the effects of metal-DOM binding on the degradation pathway of DOM. Our results showed that Cu(II)-DOM complexation affected the distribution of DOM molecular weight with elevated Mw after complexed with Cu(II). Nevertheless, the concentration of DOM decreased over the incubation period due to degradation. In the absence of Cu(II) binding, both wetland and river DOM followed similar degradation pathways, transforming from high to low molecular weight with changes predominantly in the 1-10 kDa size-fraction during DOM degradation. In contrast, in the presence of Cu(II) and thus Cu(II)-DOM binding, the degradation of DOM was enhanced, resulting in higher kinetic rate constants for both wetland and river DOM. The results of differential spectra further confirmed the degradation of DOM with a decrease in bulk spectroscopic properties and an increase in the degree of DOM-Cu(II) complexation. These findings imply a mutually reinforcing relationship between metal-DOM complexation and the degradation of DOM in aquatic environments, providing new insights into the biogeochemical behavior and environmental fate of DOM.

Environmental concentration PFOS as a light shield for lake exopolymers against photodegradation by formation of sandwiched supramolecular nanostructures

EPS (exopolymers) play a central role in global carbon cycling due to huger amount in aquatic environment, and PFOS (Perfluorooctane sulfonate) is also ubiquitous and persistent pollutant. Whether and how can PFOS of environmental concentrations affect behavior and fate of EPS was unclear. In this study, for the first time interaction between lake EPS and PFOS of environmental concentrations was visually probed by AFM-IR technique. It was found that EPS could effectively trap PFOS and the latter of environmental concentrations could trigger nanoscale reassembly of the former. Sandwiched PFOS-EPS nanostructures were formed via supramolecular interaction between EPS and PFOS, confirmed by fluorescence quenching titration and FTIR spectroscopy. The PFOS microlayers sandwiched in EPS was proven to be a light shield that could protect EPS from photodegradation because of its high reflectivity and nearly zero absorbance of UV-Vis light. The light shielding effect of PFOS was confirmed by evidences from photodegradation experiments, including change of concentrations of ions released and molecular weight distribution patterns. These novel findings provided valuable information for deep insight into environmental behavior of PFOS and its effects on biogeochemical carbon cycle of biopolymers in global waters.

Temperature Effects on Effluent Microgel Formation

Wastewater treatment plant effluent is considered an important hotspot of dissolved organic matter. The behavior and transformation of dissolved effluent organic matter (dEfOM) regulate particle sedimentation, pollutant fate, microbial attachment, and biofilm formation. However, studies have so far focused on the transformation of marine and riverine organic matter, and the current knowledge of dEfOM behavior is still limited. Fluctuations in water conditions, especially temperature, may directly alter the size, assembly speed, and structure of microgels, thereby potentially disturbing fate and the transportation of organic matter. In this study, we firstly investigated the effects of temperature on the behavior and capacity of dEfOM assembly into microgels and the possible mechanism. The microgel size and granularity of dEfOM were monitored by flow cytometry. Our results suggest that, with regard to microgels, a higher temperature leads to a higher assembly capacity but also a decrease in the size distribution. By contrast, assembly at 4 °C reduces the relative assembly capacity but increases the microgel size and granularity. The size distribution of the formed microgels at the various temperatures was ordered as follows: 4 °C > 20 °C > 35 °C. The size reduction in dEfOM assembly may be closely tied to the enhancement of hydrophobic interactions. The reduction in microgel granularity in warm conditions (35 °C) in terms of the effluent water may be caused by thermally induced condensation. Overall, the findings demonstrate the effects of temperature on dEfOM assembly and can facilitate further relevant studies on aquatic organic particle formation during current global warming scenarios.

Preferential Destruction of Micropollutants in Water through a Self-Purification Process with Dissolved Organic Carbon Polar Complexation

Removing micropollutants in real water is a scientific challenge due to primary dissolved organic carbon (DOC) and high energy consumption of current technologies. Herein, we develop a self-purification process for the preferential destruction of various micropollutants in municipal wastewater, raw drinking water, and ultrapure water with humic acid (HA) driven by the surface microelectronic field of Fe⁰-Fe_yC_z/Fe_x-GZIF-8-rGO without any additional input. It was verified that a strongly polar complex consisting of an electron-rich HA/DOC area and an electron-poor micropollutant area was formed between HA/DOC and micropollutants, promoting more electrons of micropollutants in the adsorbed complex to delocalizing to electron-rich Fe species area and be trapped by O₂, which resulted in their surface cleavage and hydrolyzation preferentially. The higher micropollutant degradation efficiency observed in real wastewaters was due to the greater complex polarity of DOC. Moreover, the electron transfer process ensured the stability of the surface microelectronic field and continuous water purification. Our findings provide a new insight into low-energy combined-micropollution water treatment.

Bacterial Necromass Is Rapidly Metabolized by Heterotrophic Bacteria and Supports Multiple Trophic Levels of the Groundwater Microbiome

Pristine groundwater is a highly stable environment with microbes adapted to dark, oligotrophic conditions. Input events like heavy rainfalls can introduce the excess particulate organic matter, including surface-derived microorganisms, thereby disturbing the groundwater microbiome. Some surface-derived bacteria will not survive this translocation, leading to an input of necromass to the groundwater. Here, we investigated the effects of necromass addition to the microbial community in fractured bedrock groundwater, using groundwater mesocosms as model systems. We followed the uptake of ¹³C-labeled necromass by the bacterial and eukaryotic groundwater community quantitatively and over time using a complementary protein-stable and DNA-stable isotope probing approach. Necromass was rapidly depleted in the mesocosms within 4 days, accompanied by a strong decrease in Shannon diversity and a 10-fold increase in bacterial 16S rRNA gene copy numbers. Species of Flavobacterium, Massilia, Rheinheimera, Rhodoferax, and Undibacterium dominated the microbial community within 2 days and were identified as key players in necromass degradation, based on a ¹³C incorporation of >90% in their peptides. Their proteomes comprised various proteins for uptake and transport functions and amino acid metabolization. After 4 and 8 days, the autotrophic and mixotrophic taxa Nitrosomonas, Limnohabitans, Paucibacter, and Acidovorax increased in abundance with a ¹³C incorporation between 0.5% and 23%. Likewise, eukaryotes assimilated necromass-derived carbon either directly or indirectly. Our data point toward a fast and exclusive uptake of labeled necromass by a few specialists followed by a concerted action of groundwater microorganisms, including autotrophs presumably fueled by released, reduced nitrogen and sulfur compounds generated during necromass degradation.

IMPORTANCE Subsurface microbiomes provide essential ecosystem services, like the generation of drinking water. These ecosystems are devoid of light-driven primary production, and microbial life is adapted to the resulting oligotrophic conditions. Modern groundwater is most vulnerable to anthropogenic and climatic impacts. Heavy rainfalls, which will increase with climate change, can result in high surface inputs into shallow aquifers by percolation or lateral flow. These inputs include terrestrial organic matter and surface-derived microbes that are not all capable to flourish in aquatic subsurface habitats. Here, we investigated the response of groundwater mesocosms to the addition of bacterial necromass, simulating event-driven surface input. We found that the groundwater microbiome responds with a rapid bloom of only a few primary degraders, followed by the activation of typical groundwater autotrophs and mixotrophs, as well as eukaryotes. Our results suggest that this multiphase strategy is essential to maintain the balance of the groundwater microbiome to provide ecosystem services.

Novel insights into molecular composition of organic phosphorus in lake sediments

Organic phosphorus (Po) plays a key role in eutrophication and ecological equilibrium in lake systems. However, characterizing the composition of Po in lake sediments has been a bottleneck hindering further understanding of the biogeochemical cycle of Po. Here, multiple methods of 31P NMR spectroscopy and molecular weight (MW) ultrafiltration were combined to detect Po composition characteristics from a novel angle in ten lake sediments of China. The results showed that sediment Po mainly consisted of monoester (mono-P, 14±8.8% of the NaOH-EDTA total P on average), diester (di-P, 1.4±1.4%) and phosphonate (phos-P, 0.1±0.1%), while the abundance of Po was largely underestimated by 31P NMR methods. Some specific species of mono-P were successfully determined, and the contents of these species followed a decreasing order: inositol hexakisphosphate (IHP6) > RNA mononucleotides (RNA-mnP) > β-glycerophosphate (β-gly) > D-glucose 6-phosphate (Glu-6) > α-glycerophosphate (α-gly), which was largely dependent upon their bioreactivity. A significant relationship between MW and Po components was observed despite the great differences among sediment samples. For refractory Po components, IHP6 was mainly rich in the MW < 3 kDa while phos-P was almost only detected in the MW > 3 kDa, which largely attributed to their metal binding affinities and characteristics. The abundance of bioreactive Po species (α-gly, β-gly, Glu-6, di-P) in high MW (HMW, > 3 kDa) were all higher than that of low MW (LMW, < 3 kDa) due to microbial degradation and self-assembly. If the HMW organic molecules were biologically and chemically more reactive than its LMW counterparts, the high percentage of α-gly, β-gly, glu-6 and di-P in the HMW portion would highlights their high reactivity from the perspective of MW. These insights revealed the dynamics of the MW distribution of Po components and provide valuable information to better understand the Po composition and bioreactivity in sediments.

Solid-Phase Extraction of Aquatic Organic Matter: Loading-Dependent Chemical Fractionation and Self-Assembly

Dissolved organic matter (DOM) is an important component in marine and freshwater environments and plays a fundamental role in global biogeochemical cycles. In the past, optical and molecular-level analytical techniques evolved and improved our mechanistic understanding about DOM fluxes. For most molecular chemical techniques, sample desalting and enrichment is a prerequisite. Solid-phase extraction has been widely applied for concentrating and desalting DOM. The major aim of this study was to constrain the influence of sorbent loading on the composition of DOM extracts. Here, we show that increased loading resulted in reduced extraction efficiencies of dissolved organic carbon (DOC), fluorescence and absorbance, and polar organic substances. Loading-dependent optical and chemical fractionation induced by the altered adsorption characteristics of the sorbent surface (styrene divinylbenzene polymer) and increased multilayer adsorption (DOM self-assembly) can fundamentally affect biogeochemical interpretations, such as the source of organic matter. Online fluorescence monitoring of the permeate flow allowed to empirically model the extraction process and to assess the degree of variability introduced by changing the sorbent loading in the extraction procedure. Our study emphasizes that it is crucial for sample comparison to keep the relative DOC loading (DOC_load [wt %]) on the sorbent always similar to avoid chemical fractionation.

Chromophoric dissolved organic matter in inland waters: Present knowledge and future challenges

Chromophoric dissolved organic matter (CDOM) plays an important role in the biogeochemical cycle and energy flow of aquatic ecosystems. Thus, systematic and comprehensive understanding of CDOM dynamics is critically important for aquatic ecosystem management. CDOM spans multiple study fields, including analytical chemistry, biogeochemistry, water color remote sensing, and global environmental change. Here, we thoroughly summarize the progresses of recent studies focusing on the characterization, distribution, sources, composition, and fate of CDOM in inland waters. Characterization methods, remote sensing estimation, and biogeochemistry cycle processes were the hotspots of CDOM studies. Specifically, optical, isotope, and mass spectrometric techniques have been widely used to characterize CDOM abundance, composition, and sources. Remote sensing is an effective tool to map CDOM distribution with high temporal and spatial resolutions. CDOM dynamics are mainly determined by watershed-related processes, including rainfall discharge, groundwater, wastewater discharges/effluents, and biogeochemical cycling occurring in soil and water bodies. We highlight the underlying mechanisms of the photochemical degradation and microbial decomposition of CDOM, and emphasize that photochemical and microbial processes of CDOM in inland waters accelerate nutrient cycling and regeneration in the water column and also exacerbate global warming by releasing greenhouse gases. Future study directions to improve the understanding of CDOM dynamics in inland waters are proposed. This review provides an interdisciplinary view and new insights on CDOM dynamics in inland waters.

Multiphase distribution and spatial patterns of perfluoroalkyl acids (PFAAs) associated with catchment characteristics in a plain river network

Perfluoroalkyl acids (PFAAs) have emerged as global concerning contaminants because of their persistence, bioaccumulation, and toxicological effects. The transport and fate of PFAAs on dimension of plain river networks (PRNs) are difficult to model due to the unique regional characteristics (i.e., undirectional flows, low slope, complicated structure and connectivity) and the lack of data on PFAAs concentrations and compositions. A typical PRN (Taihu Basin, China) was selected to elucidate the spatial patterns of PFAAs in multi-matrices, including colloidal phase, soluble phase, suspended particles, and sediment. PFAAs were ubiquitously detected in plain rivers with total concentrations of 18.48-1220 ng/L in colloids, 139.07-721.37 ng/L in soluble phase, 97.69-2247 ng/g dw in suspended particles, and <72.04-178.12 ng/g dw in sediment. PFAAs were more likely to transport via dissolved phase and accumulate into sediment. Colloids carried 45.46-62.59% of ∑PFAAs in overlying water, while suspended particles contained <36.63% of ∑PFAAs, suggesting the important role of colloids in preloading PFAAs. Moreover, PFAAs variability was correlated with indicators of the structure and connectivity of river network by gray relational analysis. The mean gray relational degrees can be sorted as edge-node ratio (0.7609) > network connectivity (0.7191) > river density (0.7012) > water surface ratio (0.6887) > river development coefficient (0.6504) > functional connectivity (0.4780). These results suggested that the effects of catchment characteristics should be taken into account in understanding PFAAs fate in the PRNs.

Adsorption and molecular weight fractionation of dissolved organic matters with different origins on colloidal surface

Dissolved organic matter (DOM) adsorption on colloid surface occurred ubiquitously in aquatic ecosystems, while variations in molecular weight (MW) distribution during adsorption remained poorly understood. In this study, the adsorption and MW fractionation of aquatic DOMs with different origins (e.g., macrophyte- and algae-derived, MDOM and ADOM, respectively) on colloid surface were examined using total organic carbon, absorption and fluorescence spectroscopy, and flow field flow fractionation (FlFFF) analysis. Both the total organic carbon and spectroscopic results showed the predominant adsorption of DOMs within the first 45 min, which behaved not synchronously with MW fractionation. Quantitative FlFFF analysis further indicated that the organic ligands with different MWs exhibited different adsorption affinities on colloid surface. It was found that 5-15 kDa and 50 kDã0.45 μm were preferential adsorption fraction for humic- and protein-like MDOM, respectively, while 0.3-2 kDa and 0.3-50 kDa were preferential adsorption fraction for humic- and protein-like ADOM, respectively. Therefore, the MW fractionation of DOMs upon adsorption was highly dependent on DOM origins as well as specific components. Results obtained herein can enlarge our insights into adsorption and the resultant behavior and fate of DOMs that were highly related with the MW fractionation in aquatic environments.

Quantitative determination of redox-active carbonyls of natural dissolved organic matter

Natural dissolved organic matter (DOM) is ubiquitous in environment and plays an important role in numerous environmental processes. Although the molecular basis of the reactivity of DOM remains poorly understood due to its extreme complexity, redox-active carbonyls (aromatic ketones/aldehydes and quinones) within DOM are believed vitally important. Except the rough determination of total carbonyls (including non-redox active -COOR) based on inflexible ¹³C chemical shift range by expensive and time-consuming solid-state nuclear magnetic resonance (NMR), there is no ready method to quantify redox-active carbonyls in DOM. Here we show that after treatment with sodium borohydride (NaBH₄) by selectively eliminating redox-active carbonyls, quenched fluorescence of carbon quantum dots (CD) by DOM recovered dramatically, and displayed a good linear relationship between redox-active carbonyls detected and DOM concentration (R² ≥ 0.977), thus allowing first quantitative determination of the redox-active carbonyls of DOM. Eight DOM isolates present 0.59%-0.90% redox-active carbonyls by the current method. And this method is robust from coexisting proteins and salts. This method could provide better or equal instructive results compared with solid-state NMR for total carbonyls or electrochemical method for electron-accepting capacities (EAC). Our results provide the underlying structural basis of many important geochemical processes that mediated by DOM. We posit that this method could apply to other complex molecular systems such as the atmospheric aerosols and extracellular polymeric substances (EPS), too.

Complexity of dissolved organic matter in the molecular size dimension: insights from coupled size exclusion chromatography electrospray ionisation mass spectrometry

This paper investigates the relationship between apparent size distribution and molecular complexity of dissolved organic matter from the natural environment. We used a high pressure size exclusion chromatography (HPSEC) method coupled to UV-Vis diode array detection (UV-DAD) and electrospray ionisation mass spectrometry (ESI-MS) in order to compare the apparent size of natural organic matter, determined by HPSEC-UV and the molecular mass determined online by ESI-MS. We found that there was a clear discrepancy between the two methods, and found evidence for an important pool of organic matter that has a strong UV absorbance and no ESI-MS signal. Contrary to some previous research, we found no evidence that apparently high molecular weight organic matter is constituted by aggregates of low molecular weight (<1000 Da) material. Furthermore, our results suggest that the majority of apparent size variability within the ESI ionisable pool of organic matter is due to secondary interaction and exclusion effects on the HPSEC column, and not true differences in hydrodynamic size or intermolecular aggregation.

Nano-plastics induce aquatic particulate organic matter (microgels) formation

The pervasive presence of plastic waste in the aquatic environment is widely viewed as one of the most serious environmental challenges for current and future generations. Microplastics ultimately degrade into nano and smaller-sizes. In turn, their biological and ecological impacts become more complicated and ambiguous. Nano-plastic particles travel from freshwater systems to estuarine and oceanic regions, during which they can interact with dissolved organic matter (DOM) to form microgels. Microgel formation is ubiquitous in aquatic systems, serving as a shunt between DOM and particulate organic matter (POM), as well as playing key roles in particle aggregation/sedimentation and pollutant transport. Currently the influences and mechanisms of the aggregation behavior and environmental fate of nano-plastics in different aquatic environments is poorly understood. Here, we report that 25 nm polystyrene nano-particles in lake and river water can promote POM (microgel) formation and accelerate the DOM-POM transition. We also adjusted various salinities of water samples to simulate scenarios based on plastic transport in waters flowing from rivers to seas. The results indicate polystyrene nanoparticles can interact with organic matter to form large organic particles, which may undergo further settling in response to specific salinity levels. Polystyrene-induced microgel formation appears to involve the hydrophobic interactions between plastics and DOM. Our data provides much needed information for modeling and understanding the retention and sedimentation of nano-plastics. We show that nano-plastics alter the DOM-POM shunt to cause unanticipated perturbations in the functionality of aquatic ecosystems.

Artificial humification of lignin architecture: Top-down and bottom-up approaches

Humic substances readily identifiable in the environment are involved in several biotic and abiotic reactions affecting carbon turnover, soil fertility, plant nutrition and stimulation, xenobiotic transformation and microbial respiration. Inspired by natural roles of humic substances, several applications of these substances, including crop stimulants, redox mediators, anti-oxidants, human medicines, environmental remediation and fish feeding, have been developed. The annual market for humic substances has grown rapidly for these reasons and due to eco-conscious features, but there is a limited supply of natural coal-related resources such as lignite and leonardite from which humic substances are extracted in bulk. The structural similarity between humic substances and lignin suggests that lignocellulosic refinery resulting in lignin residues as a by-product could be a potential candidate for a bulk source of humic-like substances, but structural differences between the two polymeric materials indicate that additional transformation procedures allowing lignin architecture to fully mimic commercial humic substances are required. In this review, we introduce the emerging concept of artificial humification of lignin-related materials as a promising strategy for lignin valorization. First, the core structural features of humic substances and the relationship between these features and the physicochemical properties, natural functions and versatile applications of the substances are described. In particular, the mechanism by which humic substances stimulate the growth of plants and hence can improve crop productivity is highlighted. Second, top-down and bottom-up transformation pathways for scalable humification of small lignin-derived phenols, technical lignins and lignin-containing plant residues are described in detail. Finally, future directions are suggested for research and development of artificial lignin humification to achieve alternative ways of producing customized analogues of humic substances.

Surfactant properties of humic acids extracted from volcanic soils and their applicability in mineral flotation processes

Surface Tension (ST) of water solutions of humic acids extracted from volcanic ash derived soils (soil humic acids, S-HA), were measured under controlled conditions of pH (13.0), temperature (25 °C) and ionic strength (NaOH 0.1M) to establish the Critical Micellar Concentration (CMC). All S-HA were characterized by elemental analysis, acid-base titration, Transmission Electronic Microscopy (TEM) micrographs, isoelectric point (IEP) and solid state ¹³C-NMR. After that, these humic acids were evaluated as potential biomaterials to be used in mineral flotation processes, where a series of experiments were conducted at different S-HA and molybdenite ratio (from 0.2 to 50 g ton^-1) establishing the IEP of all resultant materials. The use of solid state ¹³C-NMR enabled the following sequence of intensity distribution areas of S-HA to be established: O/N Alkyl>Alkyl C>Aromatic C>Carboxyl. The experimental values of ST and the calculated CMC (ranging from 0.8 to 3.3 g L^-1) revealed that for S-HA no relationship between the abundance groups and their behavior as surfactant materials was observed. In relation with IEP determined for all materials, the highest surface charge, which can be useful for flotation processes, was obtained with 0.2 g of S-HA per ton of molybdenite. Additionally, TEM studies confirm the formation of pseudoaggregates for all the S-HA considered. Finally, the S-HA could be considered as an alternative to chemical products and commercial humic acids materials in mineral flotation processes.

Contrasting effects of photochemical and microbial degradation on Cu(II) binding with fluorescent DOM from different origins

Effects of photochemical and microbial degradation on variations in composition and molecular-size of dissolved organic matter (DOM) from different sources (algal and soil) and the subsequent influence on Cu(II) binding were investigated using UV-Vis, fluorescence excitation-emission matrices coupled with parallel factor analysis, flow field-flow fractionation (FlFFF), and metal titration. The degradation processes resulted in an initial rapid decline in the bulk dissolved organic carbon and chromophoric and fluorescent DOM components, followed by a small or little decrease. Specifically, photochemical reaction decreased the aromaticity, humification and apparent molecular weights of all DOM samples, whereas a reverse trend was observed during microbial degradation. The FlFFF fractograms revealed that coagulation of both protein- and humic-like DOM induced an increase in molecular weights for algal-DOM, while the molecular weight enhancement for allochthonous soil samples was mainly attributed to the self-assembly of humic-like components. The Cu(II) binding capacity of algal-derived humic-like and fulvic-like DOM consistently increased during photo- and bio-degradation, while the soil-derived DOM exhibited a slight decline in Cu(II) binding capacity during photo-degradation but a substantial increase during microbial degradation, indicating source- and degradation-dependent metal binding heterogeneities. Pearson correlation analysis demonstrated that the Cu(II) binding potential was mostly related with aromaticity and molecular size for allochthonous soil-derived DOM, but was regulated by both DOM properties and specific degradation processes for autochthonous algal-derived DOM. This study highlighted the coupling role of inherent DOM properties and external environmental processes in regulating metal binding, and provided new insights into metal-DOM interactions and the behavior and fate of DOM-bound metals in aquatic environments.

Fermentative Spirochaetes mediate necromass recycling in anoxic hydrocarbon-contaminated habitats

Spirochaetes are frequently detected in anoxic hydrocarbon- and organohalide-polluted groundwater, but their role in such ecosystems has remained unclear. To address this, we studied a sulfate-reducing, naphthalene-degrading enrichment culture, mainly comprising the sulfate reducer Desulfobacterium N47 and the rod-shaped Spirochete Rectinema cohabitans HM. Genome sequencing and proteome analysis suggested that the Spirochete is an obligate fermenter that catabolizes proteins and carbohydrates, resulting in acetate, ethanol, and molecular hydrogen (H₂) production. Physiological experiments inferred that hydrogen is an important link between the two bacteria in the enrichment culture, with H₂ derived from fermentation by R. cohabitans used as reductant for sulfate reduction by Desulfobacterium N47. Differential proteomics and physiological experiments showed that R. cohabitans utilizes biomass (proteins and carbohydrates) released from dead cells of Desulfobacterium N47. Further comparative and community genome analyses indicated that other Rectinema phylotypes are widespread in contaminated environments and may perform a hydrogenogenic fermentative lifestyle similar to R. cohabitans. Together, these findings indicate that environmental Spirochaetes scavenge detrital biomass and in turn drive necromass recycling at anoxic hydrocarbon-contaminated sites and potentially other habitats.

Intriguing changes in molecular size and composition of dissolved organic matter induced by microbial degradation and self-assembly

Dissolved organic matter (DOM) is ubiquitous and plays an important role in regulating water quality, ecological function, and the fate and transport of trace elements and pollutants in aquatic environments. Both the colloidal precursors (i.e. <1 kDa) and bulk DOM collected from a freshwater estuary were incubated in the dark for 21 days to examine dynamic changes in molecular size and composition induced by microbial degradation and self-assembly. Results showed that the concentrations of total organic carbon, carbohydrates, and protein-like substances decreased by 11-30% during incubation, while those of humic- and fulvic-like substances remained relatively constant, indicating humic substances are more resistant to microbial utilization compared to carbohydrates and protein-like DOM. Despite the different extents in decline, these DOM components had a similar transformation pathway from the <1 kDa to colloids (1 kDa-0.45 μm) and further to microparticles (>0.45 μm). Overall, carbohydrates and protein-like substances, especially the high molecular weight components, were preferentially decomposed by microorganisms whereas humic- and fulvic-like DOM components significantly coagulated through abiotic self-assembly. The contrasting degradation/transformation pathways between the humic-like and protein-like substances along the size continuum, as also characterized by flow field-flow fractionation analysis, demonstrated that the dynamic transformation and degradation of DOM is regulated by both molecular size and organic composition. This finding provides new insights into the biogeochemical cycling pathways of heterogeneous DOM and its environmental fate and ecological role in aquatic systems.

Variations in size and composition of colloidal organic matter in a negative freshwater estuary

Dynamic variations in chemical composition and size distribution of dissolved organic matter (DOM) along the river-lake interface in the Fox River plume were investigated using ultrafiltration, flow field-flow fractionation, UV-Vis and fluorescence spectroscopy and parallel factor analysis. On average, ~67% of bulk dissolved organic carbon (DOC) were partitioned in the <1kDa (actual cutoff 2.5kDa) low molecular weight fraction, and the other 33% were in the 1kDa-0.7μm colloidal phase. Concentrations of DOC and chromophoric DOM in the bulk and size-fractionated samples decreased monotonously with decreasing conductivity from river to bay waters, demonstrating a dominant terrestrial source and quasi conservative mixing behavior. However, the percentages of colloidal fluorescent-DOM increased while those of carbohydrates decreased from river to bay waters, showing different mixing behavior in the river plume. Colloidal chromophores and humic-like fluorophores were mainly partitioned in the size range of 1-6nm, but a bimodal distribution (with peaks at 1-6 and 35-45nm) was observed for colloidal protein-like DOM. Along the river-lake transect, the peak locations of chromophores, humic-like and small-sized protein-like colloids remained almost constant, while the larger-sized protein-like colloids exhibited a slight peak shift from 38.3 to 40.4nm, showing a molecular size enhancement from high to low conductivity waters, with physical mixing, photochemical/microbial degradation, and disaggregation/repartitioning being the important processes affecting the variations of DOM size and composition. New results herein should enhance our understanding of the heterogeneity of DOM in size and composition and its fate, transport and transformation at the river-lake interface and along the aquatic continuum as a whole.

Role of microgel formation in scavenging of chromophoric dissolved organic matter and heavy metals in a river-sea system

We use riverine and marine dissolved organic carbon (DOC) polymers to examine their aggregation behavior, and to evaluate the roles of microgel formation in scavenging of chromophoric dissolved organic matter (CDOM) and heavy metals in a river-sea system. Our results indicate that riverine and marine microgels did not exhibit very much difference in size and self-assembly curve; however, the assembly effectiveness ([microgel]/DOC) of marine samples was much higher than riverine. Instead of concentration of DOC, other factors such as types and sources of DOC polymers may control the microgel abundance in aquatic environments. After filtering water samples (microgels removed), the CDOM and selected metals (Cu, Ni, Mn) in the filtrate were quantified. CDOM and metals were concurrently removed to an extent via DOC polymer re-aggregation, which also suggested that the microgels had sequestering capability in CDOM and metals. This finding provides an alternative route for CDOM and heavy metals removal from the water column. As such the process of re-aggregation into microgels should then be considered besides traditional phase partitioning in the assessment of the ecological risk and fate of hazardous materials.

Dissolved organic carbon modulates mercury concentrations in insect subsidies from streams to terrestrial consumers

Mercury (Hg) concentrations in aquatic environments have increased globally, exposing consumers of aquatic organisms to high Hg levels. For both aquatic and terrestrial consumers, exposure to Hg depends on their food sources as well as environmental factors influencing Hg bioavailability. The majority of the research on the transfer of methylmercury (MeHg), a toxic and bioaccumulating form of Hg, between aquatic and terrestrial food webs has focused on terrestrial piscivores. However, a gap exists in our understanding of the factors regulating MeHg bioaccumulation by non-piscivorous terrestrial predators, specifically consumers of adult aquatic insects. Because dissolved organic carbon (DOC) binds tightly to MeHg, affecting its transport and availability in aquatic food webs, we hypothesized that DOC affects MeHg transfer from stream food webs to terrestrial predators feeding on emerging adult insects. We tested this hypothesis by collecting data over 2 years from 10 low-order streams spanning a broad DOC gradient in the Lake Sunapee watershed in New Hampshire, USA. We found that streamwater MeHg concentration increased linearly with DOC concentration. However, streams with the highest DOC concentrations had emerging stream prey and spiders with lower MeHg concentrations than streams with intermediate DOC concentrations; a pattern that is similar to fish and larval aquatic insects. Furthermore, high MeHg concentrations found in spiders show that MeHg transfer in adult aquatic insects is an overlooked but potentially significant pathway of MeHg bioaccumulation in terrestrial food webs. Our results suggest that although MeHg in water increases with DOC, MeHg concentrations in stream and terrestrial consumers did not consistently increase with increases in streamwater MeHg concentrations. In fact, there was a change from a positive to a negative relationship between aqueous exposure and bioaccumulation at streamwater MeHg concentrations associated with DOC above ~5 mg/L. Thus, our study highlights the importance of stream DOC for MeHg dynamics beyond stream boundaries, and shows that factors modulating MeHg bioavailability in aquatic systems can affect the transfer of MeHg to terrestrial predators via aquatic subsidies.

Dynamic exchanges between DOM and POM pools in coastal and inland aquatic ecosystems: A review

Dynamic exchanges between dissolved organic matter (DOM) and particulate organic matter (POM) plays a critical role in organic carbon cycling in coastal and inland aquatic ecosystems, interactions with aquatic organisms, mobility and bioavailability of pollutants, among many other ecological and geochemical phenomena. Although DOM-POM exchange processes have been widely studied from different aspects, little to no effort has been made to date to provide a comprehensive, mechanistic, and micro-spatial schema for understanding various exchange processes occurring in different aquatic ecosystems in a unified way. The phenomena occurring between DOM and POM were explained here with the homogeneous and heterogeneous mechanisms. In the homogeneous mechanism, the participating components are only organic matter (OM) constituents themselves with aggregation and dissolution involved, whereas OM is associated with other components such as minerals and particulate colloids in the heterogeneous counterpart. Besides the generally concerned processes of aggregation/dissolution and adsorption/desorption, other ecological factors such as sunlight and organisms can also participate in DOM-POM exchanges through altering the chemical nature of OM. Despite the limitation of current analytical technologies, many unknown and/or unquantified processes need to be identified to unravel the complicated exchanges of OM between its dissolved and particulate states. Based on the review of several previous mathematical models, we proposed a unified conceptual model to describe all major dynamic exchange mechanisms on the basis of exergy theory. More knowledge of dynamic DOM-POM exchanges is warranted to overcome the potential problems arising from a simple division of OM into dissolved versus particulate states and to further develop more sophisticated mathematic models.

Bioavailability of riverine dissolved organic carbon and nitrogen in the Heilongjiang watershed of northeastern China

The bioavailabilities of dissolved organic carbon (DOC) and dissolved organic nitrogen (DON) were examined in eight sampling stations of the Heilongjiang watershed, located in Heilongjiang Province, northeast China. Water samples were incubated for 55 days at 20 °C, and the decreases in the DOC and DON concentrations were measured during the laboratory incubations. The experiments showed that bioavailable DOC (BDOC) accounted for 15-30% of DOC and bioavailable DON (BDON) accounted for 29-57% of DON. DOM bioavailability was higher for DON compared to DOC, suggesting that DON was more bioavailable and had a faster turnover than DOC in the Heilongjiang watershed. Furthermore, the percent of bioavailable DOC (%BDOC) was significantly related to SUVA254, not the DOC concentration, suggesting that the chemistry composition of DOM played a more important role in affecting its bioavailability compared to the DOM concentration. In addition, significant negative correlations were observed between the initial DOC/DON ratios and the percent of bioavailable DOM fractions (%BDOC and %BDON), especially for %BDON, implying that low C/N molecules or N-rich compounds may be preferentially utilized by microbes. Graphical Abstract DOC concentrations of eight sampling sites, microbial decomposition of DOC over 55 days, % bioavailable DOC of eight sampling sites, DOM chemical composition of eight sampling sites, demonstrated chemical composition influence on DOM bioavailability.

Abiotic reversible self-assembly of fulvic and humic acid aggregates in low electrolytic conductivity solutions by dynamic light scattering and zeta potential investigation

The aggregation of humic substances and their interaction with filtration media (membranes, soils) has implications for our understanding of membrane fouling during water treatment, the facilitated transport of contaminants, and the transport of organic matter through the microbial loop. To investigate the aggregation of fulvic and humic acids in low electrolytic conductivity solutions, laboratory studies of simulated environmental water samples as well as actual environmental water samples were examined. Intensity-, volume-, and number-based particle size distributions (PSDs) were obtained by dynamic light scattering. Aggregates were categorized into three ranges, i.e., 10-100 nm, 100-1000 nm, and >1 μm. Individual biomacromolecules and the aggregates between 10 nm and 1 μm were presumed to be precursors for the formation of a large 5-μm-sized-particle. The self-assembly of the large-in-volume, few-in-number, 5-μm-sized particle was observed in real-time and occurred in unfiltered samples and in samples filtered (0.45 μm) at a nominal size one order of magnitude smaller. The supramicrometer-sized particle formed, dissipated, and spontaneously re-formed over turbulent/quiescent cycles in the presence of sodium azide indicating reversible abiotic self-assembly. Zeta potential analyses demonstrated that colloidal stability increased as concentration increased. DLS studies of the environmental water samples were comparable to those of the simulated laboratory samples. The operational range of the instrumentation used in these experiments was 0.6 nm-6 μm; therefore, aggregates larger than 6 μm may exist in these solutions.

Partitioning of humic acids between aqueous solution and hydrogel. 2. Impact of physicochemical conditions

The effects of the physicochemical features of aqueous medium on the mode of partitioning of humic acids (HAs) into a model biomimetic gel (alginate) and a synthetic polyacrylamide gel (PAAm) were explored. Experiments were performed under conditions of different pH and ionic strength as well as in the presence or absence of complexing divalent metal ions. The amount of HA penetrating the gel phase was determined by measuring its natural fluorescence by confocal laser scanning microscopy. In both gel types, the accumulation of HA was spatially heterogeneous, with a much higher concentration located within a thin film at the gel surface. The thickness of the surface film (ca. 15 μm) was similar for both types of gel and practically independent of pH, ionic strength, and the presence of complexing divalent metal ions. The extent of HA accumulation was found to be dependent on the composition of the medium and on the type of gel. Significantly more HA was accumulated in PAAm gel as compared to that in alginate gel. In general, more HA was accumulated at lower background salt concentration levels. The distribution of different types of HA species in the gel body was linked to their behavior in the medium and the differences in physicochemical conditions inside the two phases.

Carbonaceous particles reduce marine microgel formation

An increase in ambient carbonaceous particle (CNP) levels has been found, potentially leading to significant environmental/health hazards. These particles will ultimately enter the oceanic environment and interact with dissolved organic carbon. However, a detailed mechanistic understanding of their behavior, transport, and fate in marine systems is still much needed. This study, using carbon black (CB, 14 nm) nanoparticles as a model, aimed to investigate the impact of CNPs on marine microgel formation, a critical shunt between DOC and particulate organic carbon that potentially represents a ~70-Gt organic carbon flux. We found that CB can enhance the stability of DOC polymers and reduce microgel equilibrium sizes in concentration as low as 1 μgL⁻¹ CB, possibly due to negative surface charges on CB that decrease cross-linking bridges through Ca²⁺ bonds. The reduction of marine microgel formation induced by CB could lead to a decrease in the downward transportation of microbial substrates and nutrients, and therefore, could have a significant impact on the carbon cycle and the marine ecosystem.

Dechlorination of short chain chlorinated paraffins by nanoscale zero-valent iron

In this study, nanoscale zero-valent iron (NZVI) particles were synthesized and used for the reductive dehalogenation of short chain chlorinated paraffins (SCCPs) in the laboratory. The results show that the dechlorination rate of chlorinated n-decane (CP(10)) by NZVI increased with decreased solution pH. Increasing the loading of NZVI enhanced the dechlorination rate of CP(10). With an increase in temperature, the degradation rate increased. The reduction of CP(10) by NZVI was accelerated with increasing the concentration of humic acid up to 15 mg/L but then was inhibited. The dechlorination of CP(10) within the initial 18 h followed pseudo-first order rate model. The formation of intermediate products indicates a stepwise dechlorination pathway of SCCPs by NZVI. The carbon chain length and chlorination degree of SCCPs have a polynominal impact on dechlorination reactions.

Low molecular weight components in an aquatic humic substance as characterized by membrane dialysis and orbitrap mass spectrometry

Suwannee River fulvic acid (SRFA) was dialyzed through a 100-500 molecular weight cutoff dialysis membrane, and the dialysate and retentate were analyzed by UV-visible absorption and high-resolution Orbitrap mass spectrometry (MS). A significant fraction (36% based on dissolved organic carbon) of SRFA passed through the dialysis membrane. The fraction of SRFA in the dialysate had a different UV-visible absorption spectrum and was enriched in low molecular weight molecules with a more aliphatic composition relative to the initial SRFA solution. Comparison of the SRFA spectra collected by Orbitrap MS and Fourier transform ion cyclotron resonance MS (FT-ICR MS) demonstrated that the mass accuracy of the Orbitrap MS is sufficient for determination of unique molecular formulas of compounds with masses <600 Da in a complex mixture, such as SRFA. The most intense masses detected by Orbitrap MS were found in the 100-200 Da mass range. Many of these low molecular masses corresponded to molecular formulas of previously identified compounds in organic matter, lignin, and plants, and the use of the standard addition method provided an upper concentration estimate of selected target compounds in SRFA. Collectively, these results provide evidence that SRFA contains low molecular weight components that are present individually or in loosely bound assemblies.

Composition of humic acid-degrading estuarine and marine bacterial communities

We examined the bacterial decomposition of humic acids (HA) in two flow-through culture experiments, one inoculated by marine and one by estuarine bacterial communities. In both experiments, the cultures were fed with HA media of salinities of 28 and 14, close to their ambient and a distinctly different, foreign salinity. HA were decomposed to > 60% of the initial concentration within 70 days, and the foreign salinity yielded the highest decomposition. A detrended correspondence analysis of denaturing gradient gel electrophoresis (DGGE) banding patterns showed that during incubation, the bacterial community composition underwent distinct changes. A phylogenetic analysis of DGGE bands excised and bacteria isolated at the end on HA as the sole carbon source showed that Alphaproteobacteria and Gammaproteobacteria largely dominated the communities in the marine flow-through cultures, whereas Gammaproteobacteria, Actinobacteria and Alphaproteobacteria dominated the estuarine communities. Eleven of 13 isolates obtained from both experiments were able to grow on HA as the sole carbon source, seven on phenol and three, affiliated to the Roseobacter clade, on various aromatic acids. The bacteria retrieved from the flow-through cultures were closely (96-99%) affiliated to organisms capable of degrading humic matter, aromatic and aliphatic compounds and also to other bacteria reported previously from the Wadden Sea and Weser estuary.

Perspective on the use of humic acids from biomass as natural surfactants for industrial applications

In the context of renewable vs. non-renewable sources of chemical compounds, the development of natural surfactants as a substitute for synthetic surfactants in technological applications is an important issue. In addition, as synthetic surfactants can persist in the environment causing toxic effects, the use of natural products presents a possibility to minimize impact on the environment. Nowadays, a promising new approach in surfactant-based technologies, consists of the use of humic acids (HAs) extracted directly from biomass that exhibit amphiphilic properties, and can be conveniently used as environmentally friendly surfactants. The raw material from which HAs are extracted and their macromolecular composition affect surfactant properties. Therefore fundamental data from more strictly qualitative aspects, needs to be investigated. This review highlights surfactant ability and chemical properties of HA substances coming from renewable sources in comparison to synthetic surfactants, and points out the capacity for HAs to be used effectively in this field of application.

Effects of engineered nanoparticles on the assembly of exopolymeric substances from phytoplankton

The unique properties of engineered nanoparticles (ENs) that make their industrial applications so attractive simultaneously raise questions regarding their environmental safety. ENs exhibit behaviors different from bulk materials with identical chemical compositions. Though the nanotoxicity of ENs has been studied intensively, their unintended environmental impacts remain largely unknown. Herein we report experimental results of EN interactions with exopolymeric substances (EPS) from three marine phytoplankton species: Amphora sp., Ankistrodesmus angustus and Phaeodactylum tricornutum. EPS are polysaccharide-rich anionic colloid polymers released by various microorganisms that can assemble into microgels, possibly by means of hydrophobic and ionic mechanisms. Polystyrene nanoparticles (23 nm) were used in our study as model ENs. The effects of ENs on EPS assembly were monitored with dynamic laser scattering (DLS). We found that ENs can induce significant acceleration in Amphora sp. EPS assembly; after 72 hours EN-EPS aggregation reached equilibrium, forming microscopic gels of ∼4-6 µm in size. In contrast, ENs only cause moderate assembly kinetic acceleration for A. angustus and P. tricornutum EPS samples. Our results indicate that the effects of ENs on EPS assembly kinetics mainly depend on the hydrophobic interactions of ENs with EPS polymers. The cycling mechanism of EPS is complex. Nonetheless, the change of EPS assembly kinetics induced by ENs can be considered as one potential disturbance to the marine carbon cycle.

Controlled release of anti-inflammatory siRNA from biodegradable polymeric microparticles intended for intra-articular delivery to the temporomandibular joint

PURPOSE

As the next step in the development of an intra-articular controlled release system to treat painful temporomandibular joint (TMJ) inflammation, we developed several biodegradable poly(DL-lactic-co-glycolic acid) (PLGA)-based microparticle (MP) formulations encapsulating a model anti-inflammatory small interfering RNA (siRNA) together with branched poly(ethylenimine) (PEI) as a transfecting agent. The effect of siRNA loading and N:P ratio on the release kinetics of siRNA-PEI polyplexes was determined, and the size and N:P ratio of the polyplexes released over time was characterized.

METHODS

Polyplex-loaded PLGA MPs were prepared using an established double emulsion technique. Increasing the pH of the release samples enabled siRNA-PEI dissociation and subsequent measurement of the release of each component over 28 days. Polyplex diameter was measured for all release samples and compared to freshly prepared siRNA-PEI under simulated physiologic conditions.

RESULTS

Systematic variation of siRNA loading and N:P ratio resulted in distinct siRNA and PEI release profiles. Polyplex diameter remained constant despite large variations in the relative amounts of siRNA and PEI. Excess PEI was sequestered through complexation with 500-1,000 nm diameter PLGA MP-derived particles, including small MPs and PLGA degradation products.

CONCLUSIONS

These PLGA MP formulations show exciting potential as the first intra-articular TMJ controlled release system.

Comparative study on the micelle properties of synthetic and dissolved organic matters

The conductivity of two synthetic surfactants and several natural surfactants, dissolved organic matters (DOMs), as well as their enhancement on phenanthrene solubility were measured in order to compare the formation of micelle by DOMs with synthetic surfactants, and their applicability for promoting hydrophobic organic pollutants' mobility. The DOMs could form micelle structure, similar to the synthetic surfactants. The critical micelle concentration values of the DOMs are lower than those of the synthetic surfactants, and the enhancement of phenanthrene solubility by the DOMs is comparable to or more remarkable than the synthetic surfactants. The partitioning coefficient of phenanthrene to DOM micelles decreased at high DOM concentrations, which is attributed to the structure rearrangement of DOM macromolecules, while no such phenomenon was observed for simple synthetic surfactant micelles. There was an optimum concentration range when applying DOMs to enhance HOCs' solubility and mobility. Synthetic surfactants gave a concentration dependent conductivity plot with two evident regimes, premicellar and postmicellar regimes, whereas the DOMs showed a gradual transition between the two regimes. The degree of counterion dissociation (alpha) of the DOMs was remarkably higher than those of the synthetic ionic surfactants. These results provide insight into DOM micelle structure and micelle forming process with compared to synthetic surfactants, and valuable information on using natural surfactant-enhanced remediation technology.

Humic acid aggregation in zero-valent iron systems and its effects on trichloroethylene removal

The influence of natural organic matter on contaminant removal by Fe(0) systems has been of increasing concern. Recent studies have shown that, in addition to direct sorption on the Fe(0) surfaces, humic acid complexation with dissolved iron released from corrosion results in the formation of colloids and aggregates in solution that may affect contaminant removal. High-pressure size-exclusion chromatographic analyses revealed increasing molecular weights of dissolved humic acids with reaction time. Humic acid aggregation occurred across a wide range of molecular weight fractions. Fourier transform infrared spectroscopic analysis of humic acid aggregates suggested the presence of inner-sphere complexation involving different oxygen-containing functional groups; hydrophobic interactions also probably contributed to aggregation as the humic acid of more aromatic and hydrophobic character was aggregated at a faster rate. Because of multiple underlying processes, a variety of cross-correlated physicochemical properties of humic acids contributed to their aggregation. The presence of humic acid aggregates provided an additional hydrophobic domain for partitioning that enhanced trichloroethylene removal, although steric blocking of the Fe(0) surfaces may inhibit its reduction to some extent. Comparable effects were demonstrated for various types of humic acids.

Quantification of the filterability of freshwater bacteria through 0.45, 0.22, and 0.1 microm pore size filters and shape-dependent enrichment of filterable bacterial communities

Micro-filtration is a standard process for sterilization in scientific research, medical, and industrial applications, and to remove particles in drinking water or wastewater treatment. It is generally assumed, and confirmed by quantifying filtration efficiency by plating, that filters with a 0.1-0.45 microm pore size can retain bacteria. In contrast to this assumption, we have regularly observed the passage of a significant fraction of natural freshwater bacterial communities through 0.45, 0.22, and 0.1 microm pore size filters. Flow cytometry and a regrowth assay were applied in the present study to quantify and cultivate filterable bacteria. Here we show for the first time a systematic quantification of their filterability, especially their ability to pass through 0.1 microm pore size filters. The filtered bacteria were subsequently able to grow on natural assimilable organic carbon (AOC) with specific growth rates up to 0.47 h(-1). We were able to enrich bacteria communities that pass preferentially through all three pore size filters at significantly increased percentages using successive filtration-regrowth cycles. In all instances, the dominant microbial populations comprised slender spirillum-shaped Hylemonella gracilis strains, suggesting shape-dependent selection during the filtration process. This quantification of the omnipresence of microfilterable bacterial in natural freshwater and their regrowth characteristics demand a change in the sterile filtration practice used in industrial and engineering applications as well as scientific research.

The effect of water temperature on the adsorption equilibrium of dissolved organic matter and atrazine on granular activated carbon

The influence of water temperature on the adsorption of natural dissolved organic matter (DOM) on activated carbon has not been investigated intensively yet. In this study, batch experiments with granular activated carbon (GAC) have been carried out at three temperatures (5 degrees C, 20 degrees C, 35 degrees C) using a humic acid model water and different types of surface water (lake, river, canal). Furthermore, the adsorption of an anthropogenic contaminant, atrazine, was quantified in the absence and presence of DOM. The results indicate a significant influence of water temperature on the adsorption equilibrium of DOM and atrazine. Contrary to expectations, DOM and atrazine adsorption in surface water tends to be increased with increasing water temperature, whereas the extent of this effect is dependent on the type and concentration of DOM. Furthermore, the temperature effect on atrazine adsorption is controlled by competition of DOM and atrazine on adsorption sites. Some assumptions are proposed and discussed for explaining the temperature effects observed in the batch studies.

Simultaneous Presence of Diverse Molecular Patterns in Humic Substances in Solution

The chemical and structural nature of humic substances (HS) is the object of an intense debate in the literature involving two main theoretical positions: the classical view defending the macromolecular pattern, and the new, more recent, view proposing a supramolecular pattern. In this study, we observe that both molecular patterns are present in different whole humic systems in solution. We also identify these molecular patterns with a specific fraction of HS. Thus, the HS family formed by the gray humic acids studied presented a clear macromolecular pattern, whereas the HS family formed by the fulvic acids studied presented the coexistence of supramolecular assemblies and individual molecules. The third HS family studied, the brown humic acids, presented both the macromolecular pattern and the supramolecular pattern. We also find that molecular aggregation-disaggregation has a strong influence in the fluorescence pattern of HS, thus indicating that the current concepts of HS structure derived from fluorescence studies need revision.

Quantitative determination of free-DNA uptake in river bacteria at the single-cell level by in situ rolling-circle amplification

Detection of plasmid DNA uptake in river bacteria at the single-cell level was carried out by rolling-circle amplification (RCA). Uptake of a plasmid containing the green fluorescent protein gene (gfp) by indigenous bacteria from two rivers in Osaka, Japan, was monitored for 506 h using this in situ gene amplification technique with optimized cell permeabilization conditions. Plasmid uptake determined by in situ RCA was compared to direct counts of cells expressing gfp under fluorescence microscopy to examine differences in detection sensitivities between the two methods. Detection of DNA uptake as monitored by in situ RCA was 20 times higher at maximum than that by direct counting of gfp-expressing cells. In situ RCA could detect bacteria taking up the plasmid in several samples in which no gfp-expressing cells were apparent, indicating that in situ gene amplification techniques can be used to determine accurate rates of extracellular DNA uptake by indigenous bacteria in aquatic environments.

Molecular structure in soil humic substances: the new view

A critical examination of published data obtained primarily from recent nuclear magnetic resonance spectroscopy, X-ray absorption near-edge structure spectroscopy, electrospray ionization-mass spectrometry, and pyrolysis studies reveals an evolving new view of the molecular structure of soil humic substances. According to the new view, humic substances are collections of diverse, relatively low molecular mass components forming dynamic associations stabilized by hydrophobic interactions and hydrogen bonds. These associations are capable of organizing into micellar structures in suitable aqueous environments. Humic components display contrasting molecular motional behavior and may be spatially segregated on a scale of nanometers. Within this new structural context, these components comprise any molecules intimately associated with a humic substance, such that they cannot be separated effectively by chemical or physical methods. Thus biomolecules strongly bound within humic fractions are by definition humic components, a conclusion that necessarily calls into question key biogeochemical pathways traditionally thought to be required for the formation of humic substances. Further research is needed to elucidate the intermolecular interactions that link humic components into supramolecular associations and to establish the pathways by which these associations emerge from the degradation of organic litter.