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Dawson HRS, England MH, Morrison AK, Tamsitt V, Fraser CI. Floating debris and organisms can raft to Antarctic coasts from all major Southern Hemisphere landmasses. GLOBAL CHANGE BIOLOGY 2024; 30:e17467. [PMID: 39168490 DOI: 10.1111/gcb.17467] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/15/2024] [Revised: 06/30/2024] [Accepted: 07/21/2024] [Indexed: 08/23/2024]
Abstract
Antarctica's unique marine ecosystems are threatened by the arrival of non-native marine species on rafting ocean objects. The harsh environmental conditions in Antarctica prevent the establishment of many such species, but warming around the continent and the opening up of ice-free regions may already be reducing these barriers. Although recent genomic work has revealed that rafts-potentially carrying diverse coastal passengers-reach Antarctica from sub-Antarctic islands, Antarctica's vulnerability to incursions from Southern Hemisphere continents remains unknown. Here we use 0.1° global ocean model simulations to explore whether drift connections exist between more northern, temperate landmasses and the Antarctic coastline. We show that passively floating objects can drift to Antarctica not only from sub-Antarctic islands, but also from continental locations north of the Subtropical Front including Australia, South Africa, South America and Zealandia. We find that the Antarctic Peninsula is the region at highest risk for non-native species introductions arriving by natural oceanic dispersal, highlighting the vulnerability of this region, which is also at risk from introductions via ship traffic and rapid warming. The widespread connections with sub-Antarctic and temperate landmasses, combined with an increasing abundance of marine anthropogenic rafting vectors, poses a growing risk to Antarctic marine ecosystems, especially as environmental conditions around Antarctica are projected to become more suitable for non-native species in the future.
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Affiliation(s)
- Hannah R S Dawson
- Climate Change Research Centre and ARC Centre of Excellence for Climate Extremes, University of New South Wales, Sydney, New South Wales, Australia
- Australian Centre for Excellence in Antarctic Science, University of New South Wales, Sydney, New South Wales, Australia
| | - Matthew H England
- Australian Centre for Excellence in Antarctic Science, University of New South Wales, Sydney, New South Wales, Australia
- Centre of Marine Science and Innovation, School of Biological, Earth and Environmental Sciences, University of New South Wales, Sydney, New South Wales, Australia
| | - Adele K Morrison
- Australian Centre for Excellence in Antarctic Science and Research School of Earth Sciences, Australian National University, Canberra, Australian Capital Territory, Australia
| | | | - Ceridwen I Fraser
- Department of Marine Science, University of Otago, Dunedin, New Zealand
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2
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Mohd Nasir N, Barnes DKA, Wan Hussin WMR. Benthic functionality under climate-induced environment changes offshore on the Antarctic Peninsula continental shelf. MARINE ENVIRONMENTAL RESEARCH 2024; 194:106341. [PMID: 38183736 DOI: 10.1016/j.marenvres.2024.106341] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/13/2023] [Revised: 12/22/2023] [Accepted: 01/01/2024] [Indexed: 01/08/2024]
Abstract
Marine ecosystems in Antarctica are thought to be highly vulnerable to aspects of dynamic global climate change, such as warming. In deep-water ecosystems, there has been little physico-chemical change in seawater there for millions of years. Thus, some benthic organisms are likely to include strong potential indicators of environmental changes and give early warnings of ecosystem vulnerability. In 2017 we sampled deep-water benthic assemblages across a continental shelf trough in outer Marguerite Bay, West Antarctic Peninsula (WAP). This region is one of the hotspots of climate-related physical change on Earth in terms of seasonal sea ice loss. Video and images of the seabed were captured at 5 stations, each with 20 replicates. From these, we identified substratum types and biota to functional groups to assess variability in benthic composition and diversity. We also collected coincident environmental information on depth, temperature, salinity, oxygen and chlorophyll-a (using a CTD). Climax sessile suspension feeders were the most spatially dominant group, comprising 539 individuals (39% of total abundance) that included Porifera, Brachiopoda and erect Bryozoa. ST5, the shallowest station was functionally contrasting with other stations. This functional difference was also influenced by hard substrata of ST5, which is typically preferred by climax sessile suspension feeders. Depth (or an associated driver) and hard substrates were the most apparent key factor which functionally characterised the communities, shown by the abundance of climax sessile suspension feeders. Our study showed that non-invasive, low taxonomic skill requirement, functional group approach is not only valuable in providing functional perspective on environment status, but such groupings also proved to be sensitive to environmental variability.
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Affiliation(s)
- Najib Mohd Nasir
- Faculty of Fisheries and Food Science, Universiti Malaysia Terengganu, 21030, Kuala Nerus, Terengganu, Malaysia
| | - David K A Barnes
- British Antarctic Survey, Natural Environment Research Council, UKRI, High Cross, Cambridge, United Kingdom
| | - Wan Mohd Rauhan Wan Hussin
- Faculty of Fisheries and Food Science, Universiti Malaysia Terengganu, 21030, Kuala Nerus, Terengganu, Malaysia; National Antarctic Research Centre (NARC) - UMT, ICAMB Building, Universiti Malaysia Terengganu, 21030, Kuala Nerus, Terengganu, Malaysia.
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3
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Li G, Wong TW, Shih B, Guo C, Wang L, Liu J, Wang T, Liu X, Yan J, Wu B, Yu F, Chen Y, Liang Y, Xue Y, Wang C, He S, Wen L, Tolley MT, Zhang AM, Laschi C, Li T. Bioinspired soft robots for deep-sea exploration. Nat Commun 2023; 14:7097. [PMID: 37925504 PMCID: PMC10625581 DOI: 10.1038/s41467-023-42882-3] [Citation(s) in RCA: 6] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/13/2023] [Accepted: 10/24/2023] [Indexed: 11/06/2023] Open
Abstract
The deep ocean, Earth's untouched expanse, presents immense challenges for exploration due to its extreme pressure, temperature, and darkness. Unlike traditional marine robots that require specialized metallic vessels for protection, deep-sea species thrive without such cumbersome pressure-resistant designs. Their pressure-adaptive forms, unique propulsion methods, and advanced senses have inspired innovation in designing lightweight, compact soft machines. This perspective addresses challenges, recent strides, and design strategies for bioinspired deep-sea soft robots. Drawing from abyssal life, it explores the actuation, sensing, power, and pressure resilience of multifunctional deep-sea soft robots, offering game-changing solutions for profound exploration and operation in harsh conditions.
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Affiliation(s)
- Guorui Li
- Qingdao Innovation and Development Base, Harbin Engineering University, Qingdao, China.
- Science and Technology on Underwater Vehicle Technology Laboratory, Harbin Engineering University, Harbin, China.
- College of Shipbuilding Engineering, Harbin Engineering University, Harbin, China.
| | - Tuck-Whye Wong
- Center for X-Mechanics, Zhejiang University, Hangzhou, China
- Department of Biomedical Engineering and Health Sciences, Universiti Teknologi Malaysia, Skudai, Malaysia
| | - Benjamin Shih
- School of Engineering and Applied Sciences, Harvard University, Cambridge, MA, USA
| | - Chunyu Guo
- Qingdao Innovation and Development Base, Harbin Engineering University, Qingdao, China
- Science and Technology on Underwater Vehicle Technology Laboratory, Harbin Engineering University, Harbin, China
- College of Shipbuilding Engineering, Harbin Engineering University, Harbin, China
| | - Luwen Wang
- School of Information and Electrical Engineering, Hangzhou City University, Hangzhou, China
| | - Jiaqi Liu
- School of Mechanical Engineering and Automation, Beihang University, Beijing, China
| | - Tao Wang
- Qingdao Innovation and Development Base, Harbin Engineering University, Qingdao, China
- Science and Technology on Underwater Vehicle Technology Laboratory, Harbin Engineering University, Harbin, China
- College of Shipbuilding Engineering, Harbin Engineering University, Harbin, China
| | - Xiaobo Liu
- Qingdao Innovation and Development Base, Harbin Engineering University, Qingdao, China
- Science and Technology on Underwater Vehicle Technology Laboratory, Harbin Engineering University, Harbin, China
- College of Shipbuilding Engineering, Harbin Engineering University, Harbin, China
| | - Jiayao Yan
- Department of Mechanical and Aerospace Engineering, University of California, San Diego, MA, USA
| | - Baosheng Wu
- School of Ecology and Environment, Northwestern Polytechnical University, Xi'an, China
| | - Fajun Yu
- Qingdao Innovation and Development Base, Harbin Engineering University, Qingdao, China
- Science and Technology on Underwater Vehicle Technology Laboratory, Harbin Engineering University, Harbin, China
| | - Yunsai Chen
- Qingdao Innovation and Development Base, Harbin Engineering University, Qingdao, China
| | | | - Yaoting Xue
- Center for X-Mechanics, Zhejiang University, Hangzhou, China
| | - Chengjun Wang
- Center for X-Mechanics, Zhejiang University, Hangzhou, China
| | - Shunping He
- Institute of Deep-Sea Science and Engineering, Chinese Academy of Sciences, Sanya, China
| | - Li Wen
- School of Mechanical Engineering and Automation, Beihang University, Beijing, China
| | - Michael T Tolley
- Department of Mechanical and Aerospace Engineering, University of California, San Diego, MA, USA
| | - A-Man Zhang
- Science and Technology on Underwater Vehicle Technology Laboratory, Harbin Engineering University, Harbin, China
- College of Shipbuilding Engineering, Harbin Engineering University, Harbin, China
| | - Cecilia Laschi
- Department of Mechanical Engineering, National University of Singapore, Singapore, Singapore
- The BioRobotics Institute, Scuola Superiore Sant'Anna, Pisa, Italy
| | - Tiefeng Li
- Center for X-Mechanics, Zhejiang University, Hangzhou, China.
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4
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Dünn M, Arndt H. Distribution Patterns of Benthic Protist Communities Depending on Depth Revealed by Environmental Sequencing-From the Sublittoral to the Deep Sea. Microorganisms 2023; 11:1664. [PMID: 37512837 PMCID: PMC10385078 DOI: 10.3390/microorganisms11071664] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/22/2023] [Revised: 06/11/2023] [Accepted: 06/15/2023] [Indexed: 07/30/2023] Open
Abstract
Protists are key components of the microbial food web in marine pelagic systems because they link algal and bacterial production to higher trophic levels. However, their functioning and bathymetric distribution in benthic deep-sea ecosystems are still only poorly understood. However, biogeographical patterns of communities can be coupled to the functioning of ecosystems and are therefore important to understand ecological and evolutionary processes. In this study, we investigated the diversity and distribution of benthic protist communities from the sublittoral down to the deep seafloor (50-2000 m) around three islands of the Azores in the North Atlantic Ocean. Using amplicon sequencing of the V9 region (18S rDNA) of 21 samples, we found that protist community compositions from different depths were significantly different. Three assemblages were separated along the following depths: 50 m, 150-500 m and 1000-2000 m, which indicate that deep-sea areas surrounding islands might act as isolating barriers for benthic protist species. A limited gene flow between the communities could favor speciation processes, leading to the unique protist communities found at the different investigated islands.
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Affiliation(s)
- Manon Dünn
- Institute of Zoology, Biocenter Cologne, University of Cologne, Zuelpicher Str. 47b, 50674 Cologne, Germany
| | - Hartmut Arndt
- Institute of Zoology, Biocenter Cologne, University of Cologne, Zuelpicher Str. 47b, 50674 Cologne, Germany
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Rabone M, Wiethase JH, Simon-Lledó E, Emery AM, Jones DOB, Dahlgren TG, Bribiesca-Contreras G, Wiklund H, Horton T, Glover AG. How many metazoan species live in the world's largest mineral exploration region? Curr Biol 2023; 33:2383-2396.e5. [PMID: 37236182 DOI: 10.1016/j.cub.2023.04.052] [Citation(s) in RCA: 10] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/11/2022] [Revised: 02/22/2023] [Accepted: 04/21/2023] [Indexed: 05/28/2023]
Abstract
The global surge in demand for metals such as cobalt and nickel has created unprecedented interest in deep-sea habitats with mineral resources. The largest area of activity is a 6 million km2 region known as the Clarion-Clipperton Zone (CCZ) in the central and eastern Pacific, regulated by the International Seabed Authority (ISA). Baseline biodiversity knowledge of the region is crucial to effective management of environmental impact from potential deep-sea mining activities, but until recently this has been almost completely lacking. The rapid growth in taxonomic outputs and data availability for the region over the last decade has allowed us to conduct the first comprehensive synthesis of CCZ benthic metazoan biodiversity for all faunal size classes. Here we present the CCZ Checklist, a biodiversity inventory of benthic metazoa vital to future assessments of environmental impacts. An estimated 92% of species identified from the CCZ are new to science (436 named species from a total of 5,578 recorded). This is likely to be an overestimate owing to synonyms in the data but is supported by analysis of recent taxonomic studies suggesting that 88% of species sampled in the region are undescribed. Species richness estimators place total CCZ metazoan benthic diversity at 6,233 (+/-82 SE) species for Chao1, and 7,620 (+/-132 SE) species for Chao2, most likely representing lower bounds of diversity in the region. Although uncertainty in estimates is high, regional syntheses become increasingly possible as comparable datasets accumulate. These will be vital to understanding ecological processes and risks of biodiversity loss.
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Affiliation(s)
- Muriel Rabone
- Deep-Sea Systematics and Ecology Group, Life Sciences Department, Natural History Museum, Cromwell Rd, SW7 5BD London, UK.
| | - Joris H Wiethase
- Department of Biology, University of York, Heslington, York YO10 5DD, UK
| | - Erik Simon-Lledó
- National Oceanography Centre, European Way, SO14 3ZH Southampton, UK
| | - Aidan M Emery
- Deep-Sea Systematics and Ecology Group, Life Sciences Department, Natural History Museum, Cromwell Rd, SW7 5BD London, UK
| | - Daniel O B Jones
- National Oceanography Centre, European Way, SO14 3ZH Southampton, UK
| | - Thomas G Dahlgren
- Department of Marine Sciences, University of Gothenburg, 405 30 Gothenburg, Sweden; NORCE, Norwegian Research Centre, 112, 5008 Bergen, Norway
| | - Guadalupe Bribiesca-Contreras
- Deep-Sea Systematics and Ecology Group, Life Sciences Department, Natural History Museum, Cromwell Rd, SW7 5BD London, UK
| | - Helena Wiklund
- Deep-Sea Systematics and Ecology Group, Life Sciences Department, Natural History Museum, Cromwell Rd, SW7 5BD London, UK; Department of Marine Sciences, University of Gothenburg, 405 30 Gothenburg, Sweden
| | - Tammy Horton
- National Oceanography Centre, European Way, SO14 3ZH Southampton, UK
| | - Adrian G Glover
- Deep-Sea Systematics and Ecology Group, Life Sciences Department, Natural History Museum, Cromwell Rd, SW7 5BD London, UK
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6
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Kaiser S, Stransky B, Jennings RM, Kihara TC, Brix S. Combining morphological and mitochondrial DNA data to describe a new species of Austroniscus Vanhöffen, 1914 (Isopoda, Janiroidea, Nannoniscidae) linking abyssal and hadal depths of the Puerto Rico Trench. Zootaxa 2023; 5293:401-434. [PMID: 37518475 DOI: 10.11646/zootaxa.5293.3.1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/22/2023] [Indexed: 08/01/2023]
Abstract
Hadal trenches are perceived as a unique deep-sea ecosystem with fundamentally different communities compared to the nearby abyss. So far, however, scarce information exists about how populations are genetically linked within a trench and about mechanisms for species divergence. The present study presents the morphological and molecular-genetic characterization and description of a new nannoniscid species within the genus Austroniscus Vanhöffen, 1914 obtained from abyssal and hadal depths of the Puerto Rico Trench, NW Atlantic. Samples were collected as part of the Vema-TRANSIT expedition onboard RV Sonne in January 2015. Because of the large depth differences between sampling locations (4,552-8,338 m), we expected to find different species within the genus inhabiting abyssal and hadal sites. Initial morphological examination using traditional light microscopy and Confocal Laser Scanning Microscopy was paired with subsequent molecular analysis based on mtDNA (COI and 16S). Contrary to our assumptions, combined morphological and molecular species delimitation analyses (sGMYC, mPTP, ABGD) revealed the presence of only one species spanning the abyssal and hadal seafloor of the Puerto Rico Trench. In addition, comparison with type material could show that this species belongs to a new species, Austroniscus brandtae n. sp., which is described herein. Incongruence between some species delimitation methods suggesting the presence of multiple species is interpreted as strong genetic population structuring within the trench, which is also supported by the analysis of the haplotype networks. The geographic and bathymetric distribution of Austroniscus species is discussed. The species described herein represents the first in the genus Austroniscus from the Atlantic Ocean and the deepest record of the genus to date, and hence significantly expanding previously known limits of its geographic and bathymetric range.
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Affiliation(s)
- Stefanie Kaiser
- University of Łódź; Faculty of Biology and Environmental Protection; Department of Invertebrate Zoology and Hydrobiology; Banacha St. 12/16; Łódź; 90-237; Poland; Senckenberg Research Institute; Department of Marine Zoology; Section Crustacea; Senckenberganlage 25; 60325 Frankfurt; Germany.
| | - Bente Stransky
- Museum of Nature; Leibniz Institute for the Analysis of Biodiversity Change (LIB); Centre for Taxonomy and Morphology; Martin- Luther-King-Platz 3; 20146 Hamburg; Germany.
| | - Robert M Jennings
- Temple University; Biology Department; 1900 North 12th Street; Philadelphia; PA 19122; USA.
| | - Terue Cristina Kihara
- Integrated Environmental Solutions UG-INES; c/o DZMB; Südstrand 44; 26382 Wilhelmshaven; Germany.
| | - Saskia Brix
- German Centre for Marine Biodiversity Research (DZMB); Senckenberg am Meer; Martin-Luther-King-Platz 3; 20146 Hamburg; Germany.
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7
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Neal L, Wiklund H, Gunton LM, Rabone M, Bribiesca-Contreras G, Dahlgren TG, Glover AG. Abyssal fauna of polymetallic nodule exploration areas, eastern Clarion-Clipperton Zone, central Pacific Ocean: Amphinomidae and Euphrosinidae (Annelida, Amphinomida). Zookeys 2022; 1137:33-74. [PMID: 36760485 PMCID: PMC9836652 DOI: 10.3897/zookeys.1137.86150] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/04/2022] [Accepted: 08/01/2022] [Indexed: 12/24/2022] Open
Abstract
This is a contribution in a series of taxonomic publications on benthic fauna of polymetallic nodule fields in the eastern abyssal Clarion-Clipperton Zone (CCZ). The material was collected during environmental surveys targeting exploration contract areas 'UK-1', 'OMS' and 'NORI-D', as well as an Area of Particular Environmental Interest, 'APEI-6'. The annelid families Amphinomidae and Euphrosinidae are investigated here. Taxonomic data are presented for six species from 41 CCZ-collected specimens as identified by a combination of morphological and genetic approaches; of the six species, three are here described as new, one species is likely to be new but in too poor condition to be formalised and the two others likely belong to known species. Description of three new species Euphrosinellageorgievae sp. nov., Euphrosinopsisahearni sp. nov., and Euphrosinopsishalli sp. nov. increases the number of formally described new annelid species from the targeted areas to 21 and CCZ-wide to 52. Molecular data suggest that four of the species reported here are known from CCZ only, but within CCZ they have a wide distribution. In contrast, the species identified as Bathychloeiacf.sibogae Horst, 1910 was found to have a wide distribution within the Pacific based on both morphological and molecular data, using comparative material from the abyssal South Pacific. Bathychloeiacf.balloniformis Böggemann, 2009 was found to be restricted to APEI-6 based on DNA data available from CCZ specimens only, but morphological data from other locations suggest potentially a wide abyssal distribution. The genus Euphrosinopsis was previously known only from Antarctic waters, and Euphrosinellageorgievae sp. nov. was recovered as a sister taxon to the Antarctic specimens of Euphrosinellacf.cirratoformis in our molecular phylogenetic analysis, strengthening the hypothesised link between the deep-sea and Antarctic benthic fauna.
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Affiliation(s)
- Lenka Neal
- Life Sciences Department, Natural History Museum, London SW7 5BD, UKLife Sciences Department, Natural History MuseumLondonUnited Kingdom
| | - Helena Wiklund
- Life Sciences Department, Natural History Museum, London SW7 5BD, UKLife Sciences Department, Natural History MuseumLondonUnited Kingdom,Department of Marine Sciences, University of Gothenburg, Box 463, 40530 Gothenburg, SwedenUniversity of GothenburgGothenburgSweden,Gothenburg Global Biodiversity Centre, Box 463, 40530 Gothenburg, SwedenGothenburg Global Biodiversity CentreGothenburgSweden
| | - Laetitia M. Gunton
- Australian Museum Research Institute, 1 William Street, Sydney NSW 2010, AustraliaAustralian Museum Research InstituteSydneyAustralia
| | - Muriel Rabone
- Life Sciences Department, Natural History Museum, London SW7 5BD, UKLife Sciences Department, Natural History MuseumLondonUnited Kingdom
| | - Guadalupe Bribiesca-Contreras
- Life Sciences Department, Natural History Museum, London SW7 5BD, UKLife Sciences Department, Natural History MuseumLondonUnited Kingdom
| | - Thomas G. Dahlgren
- Department of Marine Sciences, University of Gothenburg, Box 463, 40530 Gothenburg, SwedenUniversity of GothenburgGothenburgSweden,Gothenburg Global Biodiversity Centre, Box 463, 40530 Gothenburg, SwedenGothenburg Global Biodiversity CentreGothenburgSweden,NORCE Norwegian Research Centre, Bergen, NorwayNORCE Norwegian Research CentreBergenNorway
| | - Adrian G. Glover
- Life Sciences Department, Natural History Museum, London SW7 5BD, UKLife Sciences Department, Natural History MuseumLondonUnited Kingdom
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8
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Rabosky DL. Evolutionary time and species diversity in aquatic ecosystems worldwide. Biol Rev Camb Philos Soc 2022; 97:2090-2105. [PMID: 35899476 PMCID: PMC9796449 DOI: 10.1111/brv.12884] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/17/2022] [Revised: 06/24/2022] [Accepted: 06/27/2022] [Indexed: 01/01/2023]
Abstract
The latitudinal diversity gradient (LDG) is frequently described as the most dramatic biodiversity pattern on Earth, yet ecologists and biogeographers have failed to reach consensus on its primary cause. A key problem in explaining the LDG involves collinearity between multiple factors that are predicted to affect species richness in the same direction. In terrestrial systems, energy input, geographic area, and evolutionary time for species accumulation tend to covary positively with species richness at the largest spatial scales, such that their individual contributions to the LDG are confounded in global analyses. I review three diversity patterns from marine and freshwater systems that break this collinearity and which may thus provide stronger tests of the influence of time on global richness gradients. Specifically, I contrast biodiversity patterns along oceanic depth gradients, in geologically young versus ancient lakes, and in the north versus south polar marine biomes. I focus primarily on fishes due to greater data availability but synthesize patterns for invertebrates where possible. I find that regional-to-global species richness generally declines with depth in the oceans, despite the great age and stability of the deep-sea biome. Geologically ancient lakes generally do not contain more species than young lakes, and the Antarctic marine biome is not appreciably more species rich than the much younger Arctic marine biome. However, endemism is consistently higher in older systems. Patterns for invertebrate groups are less clear than for fishes and reflect a critical need for primary biodiversity data. In summary, the available data suggest that species richness is either decoupled from or only weakly related to the amount of time for diversification. These results suggest that energy, productivity, or geographic area are the primary drivers of large-scale diversity gradients. To the extent that marine and terrestrial diversity gradients result from similar processes, these examples provide evidence against a primary role for evolutionary time as the cause of the LDG.
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Affiliation(s)
- Daniel L. Rabosky
- Museum of Zoology & Department of Ecology and Evolutionary BiologyUniversity of Michigan2032 Biological Sciences BuildingAnn ArborMI48109USA
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9
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Kitchel ZJ, Conrad HM, Selden RL, Pinsky ML. The role of continental shelf bathymetry in shaping marine range shifts in the face of climate change. GLOBAL CHANGE BIOLOGY 2022; 28:5185-5199. [PMID: 35698263 PMCID: PMC9540106 DOI: 10.1111/gcb.16276] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/25/2022] [Revised: 05/05/2022] [Accepted: 05/10/2022] [Indexed: 05/26/2023]
Abstract
As a consequence of anthropogenic climate change, marine species on continental shelves around the world are rapidly shifting deeper and poleward. However, whether these shifts deeper and poleward will allow species to access more, less, or equivalent amounts of continental shelf area and associated critical habitats remains unclear. By examining the proportion of seabed area at a range of depths for each large marine ecosystem (LME), we found that shelf area declined monotonically for 19% of LMEs examined. However, the majority exhibited a greater proportion of shelf area in mid-depths or across several depth ranges. By comparing continental shelf area across 2° latitudinal bands, we found that all coastlines exhibit multiple instances of shelf area expansion and contraction, which have the potential to promote or restrict poleward movement of marine species. Along most coastlines, overall shelf habitat increases or exhibits no significant change moving towards the poles. The exception is the Southern West Pacific, which experiences an overall loss of area with increasing latitude. Changes in continental shelf area availability across latitudes and depths are likely to affect the number of species local ecosystems can support. These geometric analyses help identify regions of conservation priority and ecological communities most likely to face attrition or expansion due to variations in available area.
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Affiliation(s)
- Zoë J. Kitchel
- Ecology and Evolution Graduate ProgramRutgers UniversityNew BrunswickNew JerseyUSA
| | - Hailey M. Conrad
- Department of Fish and Wildlife ConservationBlacksburgVirginiaUSA
| | | | - Malin L. Pinsky
- Department of Ecology, Evolution, and Natural ResourcesRutgers UniversityNew BrunswickNew JerseyUSA
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10
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Recent Ostracod Fauna of the Western Ross Sea (Antarctica): A Poorly Known Ingredient of Polar Carbonate Factories. MINERALS 2022. [DOI: 10.3390/min12080937] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/01/2023]
Abstract
Ostracoda are a minor but recurrent component of Southern Ocean marine carbonate factories, and their low-Mg calcitic skeletal mineralogy helps in ensuring a noteworthy post-mortem resilience. Our study, based upon surface sediment occurrences, contributes to the better definition of their distribution vs. potential controlling factors in Antarctic waters. The ostracod fauna from the Western Ross Sea Shelf appears dominated by Australicythere polylyca, Australicythere devexa, Xestoleberis rigusa, Loxoreticulatum fallax, Cativella bensoni, Austrotrachyleberis antarctica and Patagonacythere longiducta, colonizing a variety of shelf environments along a wide bathymetric range. The abundance and richness values correlate well to nutrient distribution and sediment supply, primarily related to the circulation of different oceanographic regimes affecting the floor of the Ross Sea Shelf. Circumpolar Deep Water could represent the main factor controlling the distribution of ostracods. Similar results (high abundance and richness in ostracod values) were also recorded in the Terra Nova Bay and in a nearby area characterized by warm water rich in nutrients and composed of water of circumpolar origin flowing from the open ocean southwards onto the continental shelf. Particulate Fe (pFe), in suspended particulate matter (SPM), and other particulate trace metals in TNB could support the hypothesis that biogenic iron may significantly contribute to the bioavailable iron pool, sustaining both primary production and ostracod fauna richness in this area.
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11
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Cowart DA, Schiaparelli S, Alvaro MC, Cecchetto M, Le Port A, Jollivet D, Hourdez S. Origin, diversity, and biogeography of Antarctic scale worms (Polychaeta: Polynoidae): a wide-scale barcoding approach. Ecol Evol 2022; 12:e9093. [PMID: 35866013 PMCID: PMC9288932 DOI: 10.1002/ece3.9093] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/24/2021] [Revised: 05/06/2022] [Accepted: 05/23/2022] [Indexed: 11/14/2022] Open
Abstract
The Antarctic marine environment hosts diversified and highly endemic benthos owing to its unique geologic and climatic history. Current warming trends have increased the urgency of understanding Antarctic species history to predict how environmental changes will impact ecosystem functioning. Antarctic benthic lineages have traditionally been examined under three hypotheses: (1) high endemism and local radiation, (2) emergence of deep-sea taxa through thermohaline circulation, and (3) species migrations across the Polar Front. In this study, we investigated which hypotheses best describe benthic invertebrate origins by examining Antarctic scale worms (Polynoidae). We amassed 691 polynoid sequences from the Southern Ocean and neighboring areas: the Kerguelen and Tierra del Fuego (South America) archipelagos, the Indian Ocean, and waters around New Zealand. We performed phylogenetic reconstructions to identify lineages across geographic regions, aided by mitochondrial markers cytochrome c oxidase subunit I (Cox1) and 16S ribosomal RNA (16S). Additionally, we produced haplotype networks at the species scale to examine genetic diversity, biogeographic separations, and past demography. The Cox1 dataset provided the most illuminating insights into the evolution of polynoids, with a total of 36 lineages identified. Eunoe sp. was present at Tierra del Fuego and Kerguelen, in favor of the latter acting as a migration crossroads. Harmothoe fuligineum, widespread around the Antarctic continent, was also present but isolated at Kerguelen, possibly resulting from historical freeze-thaw cycles. The genus Polyeunoa appears to have diversified prior to colonizing the continent, leading to the co-occurrence of at least three cryptic species around the Southern and Indian Oceans. Analyses identified that nearly all populations are presently expanding following a bottleneck event, possibly caused by habitat reduction from the last glacial episodes. Findings support multiple origins for contemporary Antarctic polynoids, and some species investigated here provide information on ancestral scenarios of (re)colonization. First, it is apparent that species collected from the Antarctic continent are endemic, as the absence of closely related species in the Kerguelen and Tierra del Fuego datasets for most lineages argues in favor of Hypothesis 1 of local origin. Next, Eunoe sp. and H. fuligineum, however, support the possibility of Kerguelen and other sub-Antarctic islands acting as a crossroads for larvae of some species, in support of Hypothesis 3. Finally, the genus Polyeunoa, conversely, is found at depths greater than 150 m and may have a deep origin, in line with Hypothesis 2. These "non endemic" groups, nevertheless, have a distribution that is either north or south of the Antarctic Polar Front, indicating that there is still a barrier to dispersal, even in the deep sea.
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Affiliation(s)
- Dominique A. Cowart
- Department of Evolution, Ecology, and BehaviorUniversity of Illinois at Urbana – ChampaignUrbanaIllinoisUSA
- Company for Open Ocean Observations and Logging (COOOL)La RéunionFrance
| | - Stefano Schiaparelli
- Department of Earth, Environmental and Life Science (DiSTAV)University of GenoaGenoaItaly
- Italian National Antarctic Museum (MNA, Section of Genoa)University of GenoaGenoaItaly
| | - Maria Chiara Alvaro
- Department of Earth, Environmental and Life Science (DiSTAV)University of GenoaGenoaItaly
| | - Matteo Cecchetto
- Department of Earth, Environmental and Life Science (DiSTAV)University of GenoaGenoaItaly
- Italian National Antarctic Museum (MNA, Section of Genoa)University of GenoaGenoaItaly
| | - Anne‐Sophie Le Port
- CNRS UMR 7144 ‘Adaptation et Diversité en Milieux Marins’ (AD2M)Team ‘Dynamique de la Diversité Marine’ (DyDiv), Station Biologique de RoscoffSorbonne UniversitéRoscoffFrance
| | - Didier Jollivet
- CNRS UMR 7144 ‘Adaptation et Diversité en Milieux Marins’ (AD2M)Team ‘Dynamique de la Diversité Marine’ (DyDiv), Station Biologique de RoscoffSorbonne UniversitéRoscoffFrance
| | - Stephane Hourdez
- CNRS UMR 7144 ‘Adaptation et Diversité en Milieux Marins’ (AD2M)Team ‘Dynamique de la Diversité Marine’ (DyDiv), Station Biologique de RoscoffSorbonne UniversitéRoscoffFrance
- Laboratoire d'Ecogéochimie des Environnements Benthiques (LECOB), Observatoire Océanologique de BanyulsUMR 8222 CNRS‐Sorbonne UniversitéBanyuls‐sur‐merFrance
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12
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Reichelt-Brushett A, Hewitt J, Kaiser S, Kim RE, Wood R. Deep seabed mining and communities: A transdisciplinary approach to ecological risk assessment in the South Pacific. INTEGRATED ENVIRONMENTAL ASSESSMENT AND MANAGEMENT 2022; 18:664-673. [PMID: 34396697 DOI: 10.1002/ieam.4509] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/27/2021] [Revised: 06/18/2021] [Accepted: 08/09/2021] [Indexed: 06/13/2023]
Abstract
Deep-sea mineral extraction is a fledgling industry whose guiding principles, legislation, protocols, and regulations are still evolving. Responsible management of the industry is difficult when it is not clearly understood what biological and environmental diversity or ecosystem services may be at risk. But the industry's infancy provides an opportunity to address this challenge by stakeholder-led development and implementation of a multidisciplinary risk assessment framework. This article aims to present the findings of a workshop held in New Zealand that hosted stakeholders from a broad range of interests and regions in the South Pacific associated with the deep-sea mineral activity. The outputs provide stakeholder-informed ecological risk assessment approaches for deep-sea mining activities, identifying tools and techniques to improve the relevance of risk assessment of deep seabed mining projects to communities in the South Pacific. Discussions highlighted the importance of trust or respect among stakeholders, valuing the "life force" of the ocean, the importance of scientific data, and the complications associated with defining acceptable change. This research highlighted the need for a holistic transdisciplinary approach that connects science, management, industry, and community, an approach most likely to provide a "social license" to operate. There is also a need to revise traditional risk assessment methods to make them more relevant to stakeholders. The development of ecotoxicological tools and approaches is an example of how existing practices could be improved to better support deep-sea mineral management. A case study is provided that highlights the current challenges within the legislative framework of New Zealand. Integr Environ Assess Manag 2022;18:664-673. © 2021 SETAC.
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Affiliation(s)
- Amanda Reichelt-Brushett
- Faculty of Science and Engineering, Southern Cross University, Lismore, New South Wales, Australia
| | - Judi Hewitt
- National Institute of Water and Atmosphere (NIWA), Auckland, New Zealand
- Department of Statistics, University of Auckland, Auckland, New Zealand
| | - Stefanie Kaiser
- Department of Invertebrate Zoology and Hydrobiology, University of Lodz, Lodz, Poland
| | - Rakhyun E Kim
- Copernicus Institute of Sustainable Development, Utrecht University, Utrecht, The Netherlands
| | - Ray Wood
- Chatham Rock Phosphate, Wellington, New Zealand
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13
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Ekimova I, Valdés Á, Stanovova M, Mikhlina A, Antokhina T, Neretina T, Chichvarkhina O, Schepetov D. Connected across the ocean: taxonomy and biogeography of deep-water Nudibranchia from the Northwest Pacific reveal trans-Pacific links and two undescribed species. ORG DIVERS EVOL 2021. [DOI: 10.1007/s13127-021-00526-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
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14
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Octopuses and drilling snails as the main suspects of predation traces on shelled molluscs in West Antarctica. Polar Biol 2021. [DOI: 10.1007/s00300-021-02975-5] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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15
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Brandão SN, Saeedi H, Brandt A. Macroecology of Southern Ocean benthic Ostracoda (Crustacea) from the continental margin and abyss. Zool J Linn Soc 2021. [DOI: 10.1093/zoolinnean/zlab078] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]
Abstract
Abstract
The Southern Ocean (SO) is the least understood environment on earth, but anthropogenic impacts related to climate change, fishing activities and tourism are already well-established in the region. Herein, we investigate biodiversity patterns in the Atlantic Sector of the SO by investigating a considerable number of samples collected from a wide depth range (89–6224 m). Three topics are addressed: (1) which taxa occur in the SO; (2) if there are distinct shelf, slope and abyssal faunas; and (3) which abiotic parameters explain the ostracod assemblages. We also tested putative ecological preferences of ostracod genera, widely used in palaeoceanographical reconstruction. For this, almost 5000 living ostracods from 51 epibenthic sledge samples were identified to 140 species. Statistically significant differences were observed among the faunas from the shelf, slope and abyssal faunas, indicating that the shelf fauna survived in refugia during the glacial periods of the Quaternary. Our analyses showed that the main variables influencing ostracod distribution is depth, followed by nitrate and phosphate. Temperature, salinity and oxygen content do not seem to be as important as previously proposed. Putative ecological preferences of ostracod genera, for example, low oxygen for Cytherella, could not be confirmed, suggesting that this topic requires further investigation.
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Affiliation(s)
- Simone N Brandão
- Programa de Pós-Graduação em Zoologia, Departmento de Ciências Biológicas, Universidade Estadual de Santa Cruz, Departamento de Ciências , Ilhéus, Bahia, Brazil
| | - Hanieh Saeedi
- Senckenberg Research Institute and Natural History Museum, Frankfurt am Main, Germany
| | - Angelika Brandt
- Senckenberg Research Institute and Natural History Museum, Frankfurt am Main, Germany
- Institute of Ecology, Diversity and Evolution, Goethe University, Frankfurt am Main, Germany
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16
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Evolution and phylogeny of the deep-sea isopod families Desmosomatidae Sars, 1897 and Nannoniscidae Hansen, 1916 (Isopoda: Asellota). ORG DIVERS EVOL 2021; 21:691-717. [PMID: 34658667 PMCID: PMC8510888 DOI: 10.1007/s13127-021-00509-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/05/2021] [Accepted: 08/05/2021] [Indexed: 10/31/2022]
Abstract
In the deep sea, the phylogeny and biogeography of only a few taxa have been well studied. Although more than 200 species in 32 genera have been described for the asellote isopod families Desmosomatidae Sars, 1897 and Nannoniscidae Hansen, 1916 from all ocean basins, their phylogenetic relationships are not completely understood. There is little doubt about the close relationship of these families, but the taxonomic position of a number of genera is so far unknown. Based on a combined morphological phylogeny using the Hennigian method with a dataset of 107 described species and a molecular phylogeny based on three markers (COI, 16S, and 18S) with 75 species (most new to science), we could separate Desmosomatidae and Nannoniscidae as separate families. However, we could not support the concept of the subfamilies Eugerdellatinae Hessler, 1970 and Desmosomatinae Hessler, 1970. Most genera of both families were well supported, but several genera appear as para- or even polyphyletic. Within both families, convergent evolution and analogies caused difficulty in defining apomorphies for phylogenetic reconstructions and this is reflected in the results of the concatenated molecular tree. There is no biogeographic pattern in the distribution as the genera occur over the entire Atlantic and Pacific Ocean, showing no specific phylogeographical pattern. Poor resolution at deep desmosomatid nodes may reflect the long evolutionary history of the family and rapid evolutionary radiations. Supplementary Information The online version contains supplementary material available at 10.1007/s13127-021-00509-9.
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Błażewicz M, Jakiel A, Bamber RN, Bird GJ. Pseudotanaidae Sieg, 1976 (Crustacea: Peracarida) from the Southern Ocean: diversity and bathymetric pattern. THE EUROPEAN ZOOLOGICAL JOURNAL 2021. [DOI: 10.1080/24750263.2021.1960444] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022] Open
Affiliation(s)
- M. Błażewicz
- Department of Invertebrate Zoology and Hydrobiology, University of Lodz, Łódź, Poland
| | - A. Jakiel
- Department of Genetics and Marine Biotechnology, IO PAN, Sopot, Poland
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18
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Majewski W, Holzmann M, Gooday AJ, Majda A, Mamos T, Pawlowski J. Cenozoic climatic changes drive evolution and dispersal of coastal benthic foraminifera in the Southern Ocean. Sci Rep 2021; 11:19869. [PMID: 34615927 PMCID: PMC8494791 DOI: 10.1038/s41598-021-99155-6] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/16/2021] [Accepted: 09/21/2021] [Indexed: 02/08/2023] Open
Abstract
The Antarctic coastal fauna is characterized by high endemism related to the progressive cooling of Antarctic waters and their isolation by the Antarctic Circumpolar Current. The origin of the Antarctic coastal fauna could involve either colonization from adjoining deep-sea areas or migration through the Drake Passage from sub-Antarctic areas. Here, we tested these hypotheses by comparing the morphology and genetics of benthic foraminifera collected from Antarctica, sub-Antarctic coastal settings in South Georgia, the Falkland Islands and Patagonian fjords. We analyzed four genera (Cassidulina, Globocassidulina, Cassidulinoides, Ehrenbergina) of the family Cassidulinidae that are represented by at least nine species in our samples. Focusing on the genera Globocassidulina and Cassidulinoides, our results showed that the first split between sub-Antarctic and Antarctic lineages took place during the mid-Miocene climate reorganization, probably about 20 to 17 million years ago (Ma). It was followed by a divergence between Antarctic species ~ 10 Ma, probably related to the cooling of deep water and vertical structuring of the water-column, as well as broadening and deepening of the continental shelf. The gene flow across the Drake Passage, as well as between South America and South Georgia, seems to have occurred from the Late Miocene to the Early Pliocene. It appears that climate warming during 7-5 Ma and the migration of the Polar Front breached biogeographic barriers and facilitated inter-species hybridization. The latest radiation coincided with glacial intensification (~ 2 Ma), which accelerated geographic fragmentation of populations, demographic changes, and genetic diversification in Antarctic species. Our results show that the evolution of Antarctic and sub-Antarctic coastal benthic foraminifera was linked to the tectonic and climatic history of the area, but their evolutionary response was not uniform and reflected species-specific ecological adaptations that influenced the dispersal patterns and biogeography of each species in different ways.
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Affiliation(s)
- Wojciech Majewski
- Institute of Paleobiology, Polish Academy of Sciences, Twarda 51/55, 00-818, Warsaw, Poland.
| | - Maria Holzmann
- Department of Genetics and Evolution, University of Geneva, Sciences III, 30 Quai Ernest Ansermet, 1211, Geneve 4, Switzerland
| | - Andrew J Gooday
- National Oceanography Centre, European Way, Southampton, SO14 3ZH, UK
| | - Aneta Majda
- Institute of Paleobiology, Polish Academy of Sciences, Twarda 51/55, 00-818, Warsaw, Poland
| | - Tomasz Mamos
- Department of Invertebrate Zoology and Hydrobiology, University of Lodz, Banacha 12/16, 90-237, Łódź, Poland
| | - Jan Pawlowski
- Institute of Oceanology, Polish Academy of Sciences, Powstańców Warszawy 55, 81-712, Sopot, Poland
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19
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Alarcón-Schumacher T, Guajardo-Leiva S, Martinez-Garcia M, Díez B. Ecogenomics and Adaptation Strategies of Southern Ocean Viral Communities. mSystems 2021; 6:e0039621. [PMID: 34374561 PMCID: PMC8407431 DOI: 10.1128/msystems.00396-21] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/01/2021] [Accepted: 07/21/2021] [Indexed: 11/20/2022] Open
Abstract
The Southern Ocean (SO) represents up to one-fifth of the total carbon drawdown worldwide. Intense selective pressures (low temperature, high UV radiation, and strong seasonality) and physical isolation characterize the SO, serving as a "natural" laboratory for the study of ecogenomics and unique adaptations of endemic viral populations. Here, we report 2,416 novel viral genomes from the SO, obtained from newly sequenced viral metagenomes in combination with mining of publicly available data sets, which represents a 25% increase in the SO viral genomes reported to date. They comprised 567 viral clusters (defined as approximately genus-level groups), with 186 genera endemic to the SO, demonstrating that the SO viral community is predominantly constituted by a large pool of genetically divergent viral species from widespread viral families. The predicted proteome from SO viruses revealed that several protein clusters related to cold-shock-event responses and quorum-sensing mechanisms involved in the lysogenic-lytic cycle shift decision were under positive selection, which is ultimately important for fine adaptation of viral populations in response to the strong selective pressures of the SO. Finally, changes in the hydrophobicity patterns and amino acid frequencies suggested marked temperature-driven genetic selection of the SO viral proteome. Our data provide valuable insights into how viruses adapt and remain successful in this extreme polar marine environment. IMPORTANCE Viruses are the most abundant biologic entities in marine systems and strongly influence the microbial community composition and diversity. However, little is known about viral communities' adaptation and diversification in the ocean. In this work, we take advantage of the geographical isolation and the intense selective pressures of the SO, to which viruses are exposed, to identify potential viral adaptations due to positive environmental selection and dispersal limitation. To that end, we recovered more than two thousand novel viral genomes, revealing a high degree of divergence in these SO endemic communities. Furthermore, we describe remarkable viral adaptations in amino acid frequencies and accessory proteins related to cold shock response and quorum sensing that allow them to thrive at lower temperatures. Consequently, our work greatly expands the understanding of the diversification of the viral communities of the SO and their particular adaptations to low temperatures.
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Affiliation(s)
- Tomás Alarcón-Schumacher
- Department of Molecular Genetics and Microbiology, Pontificia Universidad Católica de Chile, Santiago, Chile
- Max Planck Institute for Marine Microbiology, Bremen, Germany
| | - Sergio Guajardo-Leiva
- Department of Molecular Genetics and Microbiology, Pontificia Universidad Católica de Chile, Santiago, Chile
| | - Manuel Martinez-Garcia
- Department of Physiology, Genetics, and Microbiology, University of Alicante, Carretera San Vicente del Raspeig, San Vicente del Raspeig, Alicante, Spain
| | - Beatriz Díez
- Department of Molecular Genetics and Microbiology, Pontificia Universidad Católica de Chile, Santiago, Chile
- Center for Climate and Resilience Research (CR) 2, Santiago, Chile
- Center for Genome Regulation (CGR), Santiago, Chile
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20
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Lörz AN, Kaiser S, Oldeland J, Stolter C, Kürzel K, Brix S. Biogeography, diversity and environmental relationships of shelf and deep-sea benthic Amphipoda around Iceland. PeerJ 2021; 9:e11898. [PMID: 34447625 PMCID: PMC8364320 DOI: 10.7717/peerj.11898] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/30/2021] [Accepted: 07/13/2021] [Indexed: 11/24/2022] Open
Abstract
The waters around Iceland, bounding the Northern North Atlantic and the Nordic seas, are a region characterized by complex hydrography and seabed topography. This and the presence of the Greenland-Iceland-Faroe-Scotland ridge (GIFR) are likely to have a major impact on the diversity and distribution of the benthic fauna there. Biodiversity in this region is also under increasing threat from climate-induced changes, ocean warming and acidification in particular, affecting the marine realm. The aim of the present study was to investigate the biodiversity and distributional patterns of amphipod crustaceans in Icelandic waters and how it relates to environmental variables and depth. A comprehensive data set from the literature and recent expeditions was compiled constituting distributional records for 355 amphipod species across a major depth gradient (18–3,700 m). Using a 1° hexagonal grid to map amphipod distributions and a set of environmental factors (depth, pH, phytobiomass, velocity, dissolved oxygen, dissolved iron, salinity and temperature) we could identify four distinct amphipod assemblages: A Deep-North, Deep-South, and a Coastal cluster as well as one restricted to the GIFR. In addition to depth, salinity and temperature were the main parameters that determined the distribution of amphipods. Diversity differed greatly between the depth clusters and was significantly higher in coastal and GIFR assemblages compared to the deep-sea clusters north and south of the GIFR. A variety of factors and processes are likely to be responsible for the perceived biodiversity patterns, which, however, appear to vary according to region and depth. Low diversity of amphipod communities in the Nordic basins can be interpreted as a reflection of the prevailing harsh environmental conditions in combination with a barrier effect of the GIFR. By contrast, low diversity of the deep North Atlantic assemblages might be linked to the variable nature of the oceanographic environment in the region over multiple spatio-temporal scales. Overall, our study highlights the importance of amphipods as a constituent part of Icelandic benthos. The strong responses of amphipod communities to certain water mass variables raise the question of whether and how their distribution will change due to climate alteration, which should be a focus of future studies.
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Affiliation(s)
- Anne-Nina Lörz
- Institute for Marine Ecosystems and Fisheries Science, Universität Hamburg, Hamburg, Germany
| | - Stefanie Kaiser
- Faculty of Biology and Environmental Protection, Department of Invertebrate Zoology and Hydrobiology, University of Łódź, Lodz, Poland
| | | | - Caroline Stolter
- Department Biology, Zoological Institute, Universität Hamburg, Hamburg, Germany
| | | | - Saskia Brix
- Deutsches Zentrum für Marine Biodiversität, Senckenberg Nature Research Society, Hamburg, Germany
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21
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Christiansen H, Heindler FM, Hellemans B, Jossart Q, Pasotti F, Robert H, Verheye M, Danis B, Kochzius M, Leliaert F, Moreau C, Patel T, Van de Putte AP, Vanreusel A, Volckaert FAM, Schön I. Facilitating population genomics of non-model organisms through optimized experimental design for reduced representation sequencing. BMC Genomics 2021; 22:625. [PMID: 34418978 PMCID: PMC8380342 DOI: 10.1186/s12864-021-07917-3] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/02/2021] [Accepted: 07/26/2021] [Indexed: 12/26/2022] Open
Abstract
BACKGROUND Genome-wide data are invaluable to characterize differentiation and adaptation of natural populations. Reduced representation sequencing (RRS) subsamples a genome repeatedly across many individuals. However, RRS requires careful optimization and fine-tuning to deliver high marker density while being cost-efficient. The number of genomic fragments created through restriction enzyme digestion and the sequencing library setup must match to achieve sufficient sequencing coverage per locus. Here, we present a workflow based on published information and computational and experimental procedures to investigate and streamline the applicability of RRS. RESULTS In an iterative process genome size estimates, restriction enzymes and size selection windows were tested and scaled in six classes of Antarctic animals (Ostracoda, Malacostraca, Bivalvia, Asteroidea, Actinopterygii, Aves). Achieving high marker density would be expensive in amphipods, the malacostracan target taxon, due to the large genome size. We propose alternative approaches such as mitogenome or target capture sequencing for this group. Pilot libraries were sequenced for all other target taxa. Ostracods, bivalves, sea stars, and fish showed overall good coverage and marker numbers for downstream population genomic analyses. In contrast, the bird test library produced low coverage and few polymorphic loci, likely due to degraded DNA. CONCLUSIONS Prior testing and optimization are important to identify which groups are amenable for RRS and where alternative methods may currently offer better cost-benefit ratios. The steps outlined here are easy to follow for other non-model taxa with little genomic resources, thus stimulating efficient resource use for the many pressing research questions in molecular ecology.
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Affiliation(s)
- Henrik Christiansen
- Laboratory of Biodiversity and Evolutionary Genomics, KU Leuven, Leuven, Belgium.
| | - Franz M Heindler
- Laboratory of Biodiversity and Evolutionary Genomics, KU Leuven, Leuven, Belgium
| | - Bart Hellemans
- Laboratory of Biodiversity and Evolutionary Genomics, KU Leuven, Leuven, Belgium
| | - Quentin Jossart
- Marine Biology Group, Vrije Universiteit Brussel (VUB), Brussels, Belgium
| | | | - Henri Robert
- OD Nature, Royal Belgian Institute of Natural Sciences, Brussels, Belgium
| | - Marie Verheye
- OD Nature, Royal Belgian Institute of Natural Sciences, Brussels, Belgium
| | - Bruno Danis
- Marine Biology Laboratory, Université Libre de Bruxelles (ULB), Brussels, Belgium
| | - Marc Kochzius
- Marine Biology Group, Vrije Universiteit Brussel (VUB), Brussels, Belgium
| | - Frederik Leliaert
- Marine Biology Research Group, Ghent University, Ghent, Belgium.,Meise Botanic Garden, Meise, Belgium
| | - Camille Moreau
- Marine Biology Laboratory, Université Libre de Bruxelles (ULB), Brussels, Belgium.,Université de Bourgogne Franche-Comté (UBFC) UMR CNRS 6282 Biogéosciences, Dijon, France
| | - Tasnim Patel
- OD Nature, Royal Belgian Institute of Natural Sciences, Brussels, Belgium
| | - Anton P Van de Putte
- Laboratory of Biodiversity and Evolutionary Genomics, KU Leuven, Leuven, Belgium.,OD Nature, Royal Belgian Institute of Natural Sciences, Brussels, Belgium.,Marine Biology Laboratory, Université Libre de Bruxelles (ULB), Brussels, Belgium
| | - Ann Vanreusel
- Marine Biology Research Group, Ghent University, Ghent, Belgium
| | - Filip A M Volckaert
- Laboratory of Biodiversity and Evolutionary Genomics, KU Leuven, Leuven, Belgium
| | - Isa Schön
- OD Nature, Royal Belgian Institute of Natural Sciences, Brussels, Belgium
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22
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Parker E, Dornburg A, Struthers CD, Jones CD, Near TJ. Phylogenomic species delimitation dramatically reduces species diversity in an Antarctic adaptive radiation. Syst Biol 2021; 71:58-77. [PMID: 34247239 DOI: 10.1093/sysbio/syab057] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/03/2020] [Revised: 07/06/2021] [Accepted: 06/30/2021] [Indexed: 11/14/2022] Open
Abstract
Application of genetic data to species delimitation often builds confidence in delimitations previously hypothesized using morphological, ecological, and geographic data and frequently yields recognition of previously-undescribed cryptic diversity. However, a recent critique of genomic data-based species delimitation approaches is that they have the potential to conflate population structure with species diversity, resulting in taxonomic oversplitting. The need for an integrative approach to species delimitation, in which molecular, morphological, ecological, and geographic lines of evidence are evaluated together, is becoming increasingly apparent. Here, we integrate phylogenetic, population genetic, and coalescent analyses of genome-wide sequence data with investigation of variation in multiple morphological traits to delimit species within the Antarctic barbeled plunderfishes (Artedidraconidae: Pogonophryne). Pogonophryne currently comprises 29 valid species, most of which are distinguished solely by variation in ornamentation of the mental barbel that projects from the lower jaw, a structure previously shown to vary widely within a single species. However, our genomic and phenotypic analyses result in a dramatic reduction in the number of distinct species recognized within the clade, providing evidence to support the recognition of no more than six species. We propose to synonymize 24 of the currently recognized species with five species of Pogonophryne. We find genomic and phenotypic evidence for a new species of Pogonophryne from specimens collected in the Ross Sea. Our findings represent a rare example in which application of molecular data provides evidence of taxonomic oversplitting on the basis of morphology, clearly demonstrating the utility of an integrative species delimitation framework.
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Affiliation(s)
- Elyse Parker
- Department of Ecology & Evolutionary Biology, Yale University, P.O. Box 208106, New Haven, CT 06520, USA
| | - Alex Dornburg
- Department of Bioinformatics and Genomics, University of North Carolina, Charlotte, Charlotte, NC 28223, USA
| | - Carl D Struthers
- Museum of New Zealand Te Papa Tongarewa, Wellington, New Zealand
| | - Christopher D Jones
- Antarctic Ecosystem Research Division, NOAA Southwest Fisheries Science Center, La Jolla, CA 92037, USA
| | - Thomas J Near
- Department of Ecology & Evolutionary Biology, Yale University, P.O. Box 208106, New Haven, CT 06520, USA.,Peabody Museum of Natural History, Yale University, New Haven, CT 06520, USA
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Moles J, Derkarabetian S, Schiaparelli S, Schrödl M, Troncoso JS, Wilson NG, Giribet G. An approach using ddRADseq and machine learning for understanding speciation in Antarctic Antarctophilinidae gastropods. Sci Rep 2021; 11:8473. [PMID: 33875688 PMCID: PMC8055997 DOI: 10.1038/s41598-021-87244-5] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/29/2020] [Accepted: 03/25/2021] [Indexed: 02/02/2023] Open
Abstract
Sampling impediments and paucity of suitable material for molecular analyses have precluded the study of speciation and radiation of deep-sea species in Antarctica. We analyzed barcodes together with genome-wide single nucleotide polymorphisms obtained from double digestion restriction site-associated DNA sequencing (ddRADseq) for species in the family Antarctophilinidae. We also reevaluated the fossil record associated with this taxon to provide further insights into the origin of the group. Novel approaches to identify distinctive genetic lineages, including unsupervised machine learning variational autoencoder plots, were used to establish species hypothesis frameworks. In this sense, three undescribed species and a complex of cryptic species were identified, suggesting allopatric speciation connected to geographic or bathymetric isolation. We further observed that the shallow waters around the Scotia Arc and on the continental shelf in the Weddell Sea present high endemism and diversity. In contrast, likely due to the glacial pressure during the Cenozoic, a deep-sea group with fewer species emerged expanding over great areas in the South-Atlantic Antarctic Ridge. Our study agrees on how diachronic paleoclimatic and current environmental factors shaped Antarctic communities both at the shallow and deep-sea levels, promoting Antarctica as the center of origin for numerous taxa such as gastropod mollusks.
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Affiliation(s)
- Juan Moles
- Museum of Comparative Zoology, Department of Organismic and Evolutionary Biology, Harvard University, 26 Oxford Street, Cambridge, MA, 02138, USA.
- SNSB-Bavarian State Collection of Zoology, Münchhausenstrasse 21, 81247, Munich, Germany.
- Biozentrum Ludwig Maximilians University and GeoBio-Center LMU Munich, Munich, Germany.
| | - Shahan Derkarabetian
- Museum of Comparative Zoology, Department of Organismic and Evolutionary Biology, Harvard University, 26 Oxford Street, Cambridge, MA, 02138, USA
| | - Stefano Schiaparelli
- DiSTAV, University of Genoa, C.so Europa 26, 16132, Genoa, Italy
- Italian National Antarctic Museum (MNA, Section of Genoa), Viale Benedetto XV n. 5, 16132, Genoa, Italy
| | - Michael Schrödl
- SNSB-Bavarian State Collection of Zoology, Münchhausenstrasse 21, 81247, Munich, Germany
- Biozentrum Ludwig Maximilians University and GeoBio-Center LMU Munich, Munich, Germany
| | - Jesús S Troncoso
- Departamento de Ecoloxía e Bioloxía Animal, Universidade de Vigo, Campus Lagoas-Marcosende s/n, 36200, Vigo, Spain
| | - Nerida G Wilson
- Collections and Research, Western Australian Museum, Welshpool DC, Locked Bag 49, Perth, WA, 6986, Australia
- School of Biological Sciences, University of Western Australia, 35 Stirling Hwy, Crawley, WA, 6009, Australia
| | - Gonzalo Giribet
- Museum of Comparative Zoology, Department of Organismic and Evolutionary Biology, Harvard University, 26 Oxford Street, Cambridge, MA, 02138, USA
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Gusmão LC, Rodríguez E. Deep-Sea Anemones (Cnidaria: Anthozoa: Actiniaria) from the South Atlantic. BULLETIN OF THE AMERICAN MUSEUM OF NATURAL HISTORY 2021. [DOI: 10.1206/0003-0090.444.1.1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/01/2022]
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Kaiser S, Kihara TC, Brix S, Mohrbeck I, Janssen A, Jennings RM. Species boundaries and phylogeographic patterns in new species of Nannoniscus (Janiroidea: Nannoniscidae) from the equatorial Pacific nodule province inferred from mtDNA and morphology. Zool J Linn Soc 2021. [DOI: 10.1093/zoolinnean/zlaa174] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
Abstract
Abstract
Spatial patterns of genetic variation (based on COI and 16S mtDNA) for morphologically similar species in the isopod genus Nannoniscus G.O. Sars. 1870 were examined that occur broadly across the Clarion Clipperton Fracture Zone (CCZ). Samples were obtained from five different licence areas as well as an Area of Particular Environmental Interest (APEI-6) with sites located at various distances (a few to several hundred kilometres) from one another. Applying three different species delimitation (SD) methods (sGMYC, mPTP and ABGD) of the molecular data, we could distinguish between four and 12 different molecular taxonomic operational units (MOTUs). Morphological analyses could confirm five distinct phenotypic clades that represent species new to science and are described here: Nannoniscus brenkei sp. nov., Nannoniscus hilario sp. nov., Nannoniscus magdae sp. nov., Nannoniscus menoti sp. nov. and Nannoniscus pedro sp. nov. Despite the assumed limited dispersal capacity of Nannoniscus species, we found haplotypes of two species to be geographically widespread (up to > 1400 km apart), as opposed to several divergent clades occurring in close vicinity or even sympatry. Geographic distance appeared to explain the phylogeographic structure of Nannoniscus species to some extent, although oceanographic features and level of environmental heterogeneity were probably equally important.
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Affiliation(s)
- Stefanie Kaiser
- German Centre for Marine Biodiversity Research (DZMB), Senckenberg am Meer, c/o Center of Natural History (CeNak), Universität Hamburg, Martin-Luther-King-Platz, Hamburg, Germany
- CeNak, Universität Hamburg, Martin-Luther-King-Platz, Hamburg, Germany
| | - Terue Cristina Kihara
- German Centre for Marine Biodiversity Research (DZMB), Senckenberg am Meer, Südstrand, Wilhelmshaven, Germany
- INES Integrated Environmental Solutions UG, Südstrand, Wilhelmshaven, Germany
| | - Saskia Brix
- German Centre for Marine Biodiversity Research (DZMB), Senckenberg am Meer, c/o Center of Natural History (CeNak), Universität Hamburg, Martin-Luther-King-Platz, Hamburg, Germany
| | - Inga Mohrbeck
- German Centre for Marine Biodiversity Research (DZMB), Senckenberg am Meer, Südstrand, Wilhelmshaven, Germany
| | - Annika Janssen
- German Centre for Marine Biodiversity Research (DZMB), Senckenberg am Meer, Südstrand, Wilhelmshaven, Germany
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26
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Cunningham EM, Ehlers SM, Dick JTA, Sigwart JD, Linse K, Dick JJ, Kiriakoulakis K. High Abundances of Microplastic Pollution in Deep-Sea Sediments: Evidence from Antarctica and the Southern Ocean. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2020; 54:13661-13671. [PMID: 33086791 DOI: 10.1021/acs.est.0c03441] [Citation(s) in RCA: 111] [Impact Index Per Article: 27.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/14/2023]
Abstract
Plastic pollution in Antarctica and the Southern Ocean has been recorded in scientific literature since the 1980s; however, the presence of microplastic particles (<5 mm) is less understood. Here, we aimed to determine whether microplastic accumulation would vary among Antarctic and Southern Ocean regions through studying 30 deep-sea sediment cores. Additionally, we aimed to highlight whether microplastic accumulation was related to sample depth or the sediment characteristics within each core. Sediment cores were digested and separated using a high-density sodium polytungstate solution (SPT) and microplastic particles were identified using micro-Fourier-transform infrared spectroscopy (μFTIR). Microplastic pollution was found in 93% of the sediment cores (28/30). The mean (±SE) microplastics per gram of sediment was 1.30 ± 0.51, 1.09 ± 0.22, and 1.04 ± 0.39 MP/g, for the Antarctic Peninsula, South Sandwich Islands, and South Georgia, respectively. Microplastic fragment accumulation correlated significantly with the percentage of clay within cores, suggesting that microplastics have similar dispersion behavior to low density sediments. Although no difference in microplastic abundance was found among regions, the values were much higher in comparison to less remote ecosystems, suggesting that the Antarctic and Southern Ocean deep-sea accumulates higher numbers of microplastic pollution than previously expected.
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Affiliation(s)
- Eoghan M Cunningham
- School of Biological and Environmental Sciences, Liverpool John Moores University, 3 Byrom Sreett, Liverpool L3 3AF, U.K
- Queen's University Marine Laboratory, Queen's University Belfast, 12-13 The Strand, Portaferry, BT22 1PF, Northern Ireland U.K
| | - Sonja M Ehlers
- Department of Animal Ecology, Federal Institute of Hydrology, Am Mainzer Tor 1, 56068 Koblenz, Germany
| | - Jaimie T A Dick
- Queen's University Marine Laboratory, Queen's University Belfast, 12-13 The Strand, Portaferry, BT22 1PF, Northern Ireland U.K
| | - Julia D Sigwart
- Queen's University Marine Laboratory, Queen's University Belfast, 12-13 The Strand, Portaferry, BT22 1PF, Northern Ireland U.K
| | - Katrin Linse
- British Antarctic Survey, High Cross Madingley Road, Cambridge, CB3 0ET, U.K
| | - Jon J Dick
- School of Biological and Environmental Sciences, Liverpool John Moores University, 3 Byrom Sreett, Liverpool L3 3AF, U.K
| | - Konstadinos Kiriakoulakis
- School of Biological and Environmental Sciences, Liverpool John Moores University, 3 Byrom Sreett, Liverpool L3 3AF, U.K
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Fabri-Ruiz S, Navarro N, Laffont R, Danis B, Saucède T. Diversity of Antarctic Echinoids and Ecoregions of the Southern Ocean. BIOL BULL+ 2020. [DOI: 10.1134/s1062359020060047] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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Foraminifer and Ostracod Occurrence in a Cool-Water Carbonate Factory of the Cape Adare (Ross Sea, Antarctica): A Key Lecture for the Climatic and Oceanographic Variations in the Last 30,000 Years. GEOSCIENCES 2020. [DOI: 10.3390/geosciences10100413] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
Foraminifers and ostracods were studied in a gravity-core recovered near Cape Adare (Ross Sea, Antarctica) with the aim of identifying the climatic and oceanographic variations during the last 30 ka. The sedimentary sequence represents conditions of a cool-water carbonate factory, which evidences that during the Marine Isotope Stage 2 (MIS2) the area was ice-free and very productive. The overall preservation of delicate skeletal remains such as bryozoans and molluscs indicated moderate bottom currents. This carbonate factory was interrupted by some terrigenous levels, representing conditions of instability/retreat of the ice shelves southward. The younger levels were referred to the meltwater pulse (MWP)-1A and 1B events. The Holocene sequence comprised more terrigenous sediments, reflecting high bottom-currents similar to the present-day conditions. Very abundant and well preserved foraminifers and ostracods, representative of shelf-upper slope paleoenvironments, were recovered. Epistominella exigua, among the foraminifers, suggested the influence of the Circumpolar Deep Water during some periods of the late Quaternary. Heavy-test taxa, such as Cibicides refulgens, indicated strengthening bottom hydrodynamics. As for the ostracods, peaks in the presence of Australicythere devexa, Bairdoppilata simplex and Pseudocythere aff. caudata together with significant values of Polycope spp. allowed us to identify environments rich in nutrients with the influence of cold and deep water upwelling phenomena.
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29
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Fauna associated with morphologically distinct macroalgae from Admiralty Bay, King George Island (Antarctica). Polar Biol 2020. [DOI: 10.1007/s00300-020-02726-y] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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Li Q, Lei Y, Morard R, Li T, Wang B. Diversity hotspot and unique community structure of foraminifera in the world's deepest marine blue hole - Sansha Yongle Blue Hole. Sci Rep 2020; 10:10257. [PMID: 32581270 PMCID: PMC7314809 DOI: 10.1038/s41598-020-67221-0] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/18/2019] [Accepted: 06/01/2020] [Indexed: 11/09/2022] Open
Abstract
Marine blue holes are precious geological heritages with high scientific research values. Their physical and chemical characteristics are unique because of the steep-walled structure and isolated water column which create isolated ecosystems in geographically restricted areas. The Sansha Yongle Blue Hole (SYBH) is the world's deepest marine blue hole. Here, we generated the first DNA metabarcoding dataset from SYBH sediment focusing on foraminifera, a group of protists that have colonized various marine environments. We collected sediment samples from SYBH along a depth gradient to characterize the foraminiferal diversity and compared them with the foraminiferal diversity of the costal Jiaozhou Bay (JZB) and the abyssal Northwest Pacific Ocean (NWP). We amplified the SSU rDNA of foraminifera and sequenced them with high-throughput sequencing. The results showed that the foraminiferal assemblages in SYBH were vertically structured in response to the abiotic gradients and diversity was higher than in JZB and NWP. This study illustrates the capacity of foraminifera to colonize hostile environments and shows that blue holes are natural laboratories to explore physiological innovation associated with anoxia.
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Affiliation(s)
- Qingxia Li
- Laboratory of Marine Organism Taxonomy and Phylogeny, Institute of Oceanology, Chinese Academy of Sciences, Qingdao, 266071, China
- University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Yanli Lei
- Laboratory of Marine Organism Taxonomy and Phylogeny, Institute of Oceanology, Chinese Academy of Sciences, Qingdao, 266071, China.
- University of Chinese Academy of Sciences, Beijing, 100049, China.
- Center for Ocean Mega-Science, Chinese Academy of Sciences, Qingdao, 266071, China.
| | - Raphaёl Morard
- MARUM Center for Marine Environmental Sciences, University of Bremen, Leobener Strasse, 28359, Bremen, Germany
| | - Tiegang Li
- Key Laboratory of Marine Sedimentology and Environmental Geology, First Institute of Oceanography, Ministry of Natural Resources, Qingdao, 266061, China.
- Pilot National Laboratory for Marine Science and Technology, Qingdao, 266237, China.
| | - Baodong Wang
- Key Laboratory of Marine Sedimentology and Environmental Geology, First Institute of Oceanography, Ministry of Natural Resources, Qingdao, 266061, China
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Discovery of widely available abyssal rock patches reveals overlooked habitat type and prompts rethinking deep-sea biodiversity. Proc Natl Acad Sci U S A 2020; 117:15450-15459. [PMID: 32554606 PMCID: PMC7355009 DOI: 10.1073/pnas.1920706117] [Citation(s) in RCA: 19] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022] Open
Abstract
Ground-truthed analyses of multibeam sonar data along a fracture zone of the northern Mid-Atlantic Ridge reveal an abyssal seafloor much rockier than previously assumed. Our data show rock exposures occurring at all crustal ages from 0–100 Ma along the Vema Fracture Zone and that approximately 260,000 km2 of rock habitats can be expected to occur along Atlantic fracture zones alone. This higher than expected geodiversity implies that future sampling campaigns should be considerably more sophisticated than at present to capture the full deep-sea habitat heterogeneity. We provide a baseline to unravel the processes responsible for the evolution and persistence of biodiversity on the deep seafloor as well as to determine the significant scales of these processes in the benthoscape. Habitat heterogeneity and species diversity are often linked. On the deep seafloor, sediment variability and hard-substrate availability influence geographic patterns of species richness and turnover. The assumption of a generally homogeneous, sedimented abyssal seafloor is at odds with the fact that the faunal diversity in some abyssal regions exceeds that of shallow-water environments. Here we show, using a ground-truthed analysis of multibeam sonar data, that the deep seafloor may be much rockier than previously assumed. A combination of bathymetry data, ruggedness, and backscatter from a trans-Atlantic corridor along the Vema Fracture Zone, covering crustal ages from 0 to 100 Ma, show rock exposures occurring at all crustal ages. Extrapolating to the whole Atlantic, over 260,000 km2 of rock habitats potentially occur along Atlantic fracture zones alone, significantly increasing our knowledge about abyssal habitat heterogeneity. This implies that sampling campaigns need to be considerably more sophisticated than at present to capture the full deep-sea habitat heterogeneity and biodiversity.
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Antoł A, Labecka AM, Horváthová T, Zieliński B, Szabla N, Vasko Y, Pecio A, Kozłowski J, Czarnoleski M. Thermal and oxygen conditions during development cause common rough woodlice (Porcellio scaber) to alter the size of their gas-exchange organs. J Therm Biol 2020; 90:102600. [DOI: 10.1016/j.jtherbio.2020.102600] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/18/2019] [Revised: 03/27/2020] [Accepted: 04/13/2020] [Indexed: 11/16/2022]
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Fabri-Ruiz S, Danis B, Navarro N, Koubbi P, Laffont R, Saucède T. Benthic ecoregionalization based on echinoid fauna of the Southern Ocean supports current proposals of Antarctic Marine Protected Areas under IPCC scenarios of climate change. GLOBAL CHANGE BIOLOGY 2020; 26:2161-2180. [PMID: 31919925 DOI: 10.1111/gcb.14988] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/31/2019] [Revised: 12/20/2019] [Accepted: 12/27/2019] [Indexed: 06/10/2023]
Abstract
The Southern Ocean (SO) is among the regions on Earth that are undergoing regionally the fastest environmental changes. The unique ecological features of its marine life make it particularly vulnerable to the multiple effects of climate change. A network of Marine Protected Areas (MPAs) has started to be implemented in the SO to protect marine ecosystems. However, considering future predictions of the Intergovernmental Panel on Climate Change (IPCC), the relevance of current, static, MPAs may be questioned under future scenarios. In this context, the ecoregionalization approach can prove promising in identifying well-delimited regions of common species composition and environmental settings. These so-called ecoregions are expected to show similar biotic responses to environmental changes and can be used to define priority areas for the designation of new MPAs and the update of their current delimitation. In the present work, a benthic ecoregionalization of the entire SO is proposed for the first time based on abiotic environmental parameters and the distribution of echinoid fauna, a diversified and common member of Antarctic benthic ecosystems. A novel two-step approach was developed combining species distribution modeling with Random Forest and Gaussian Mixture modeling from species probabilities to define current ecoregions and predict future ecoregions under IPCC scenarios RCP 4.5 and 8.5. The ecological representativity of current and proposed MPAs of the SO is discussed with regard to the modeled benthic ecoregions. In all, 12 benthic ecoregions were determined under present conditions, they are representative of major biogeographic patterns already described. Our results show that the most dramatic changes can be expected along the Antarctic Peninsula, in East Antarctica and the sub-Antarctic islands under both IPCC scenarios. Our results advocate for a dynamic definition of MPAs, they also argue for improving the representativity of Antarctic ecoregions in proposed MPAs and support current proposals of Conservation of Antarctic Marine Living Resources for the creation of Antarctic MPAs.
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Affiliation(s)
- Salomé Fabri-Ruiz
- Biogéosciences, UMR CNRS/EPHE 6282, Université Bourgogne Franche-Comté, Dijon, France
- Laboratoire de Biologie Marine, Université Libre de Bruxelles, Brussels, Belgium
| | - Bruno Danis
- Laboratoire de Biologie Marine, Université Libre de Bruxelles, Brussels, Belgium
| | - Nicolas Navarro
- Biogéosciences, UMR CNRS/EPHE 6282, Université Bourgogne Franche-Comté, Dijon, France
- EPHE, PSL University, Paris, France
| | - Philippe Koubbi
- UFR 918 Terre Environnement et Biodiversité, Sorbonne Université, Paris Cedex 05, France
- IFREMER, Centre Manche mer du Nord. Laboratoire Halieutique de Manche-Mer du Nord, Boulogne-sur-Mer, France
| | - Rémi Laffont
- Biogéosciences, UMR CNRS/EPHE 6282, Université Bourgogne Franche-Comté, Dijon, France
| | - Thomas Saucède
- Biogéosciences, UMR CNRS/EPHE 6282, Université Bourgogne Franche-Comté, Dijon, France
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Riehl T, De Smet B. Macrostylis metallicola spec. nov.-an isopod with geographically clustered genetic variability from a polymetallic-nodule area in the Clarion-Clipperton Fracture Zone. PeerJ 2020; 8:e8621. [PMID: 32149025 PMCID: PMC7049464 DOI: 10.7717/peerj.8621] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/05/2019] [Accepted: 01/22/2020] [Indexed: 11/20/2022] Open
Abstract
Background The Clarion-Clipperton Fracture Zone (CCFZ) in the Northeast Central Pacific Ocean is a region of heightened scientific and public interest because of its wealth in manganese nodules. Due to a poor ecological understanding at the abyssal seafloor and limited knowledge of the organisms inhabiting this area, huge efforts in alpha taxonomy are required. To predict and manage potential hazards associated with future mining, taxonomy is an essential first step to grasp fundamental ecosystem traits, such as biogeographic patterns, connectivity, and the potential for post-impact recolonization. Amongst samples from the Global Sea Mineral Resources NV exploration area (EA) in the CCFZ an undescribed species of the isopod crustacean family Macrostylidae was discovered. Previously, it has been reported from two other nearby regions, the Institut Français de Recherche pour l’Exploitation de la Mer and BGR EAs. There it was one of the more widely distributed and abundant species of the benthic macrofauna and exhibited geographically structured populations. It nevertheless remained taxonomically undescribed so far. Methods The new species is described by means of integrative taxonomy. Morphologically, macro photography, confocal microscopy, scanning electron microscopy and light microscopy were used to describe the species and to get first insights on its phylogenetic origin. Additionally, mitochondrial DNA markers were used to test the morphological allocation of the two dimorphic sexes and juvenile stages, to analyze geographic patterns of genetic differentiation, and to study intra-and inter-species relationships, also in light of previously published population genetics on this species. Results The new species, Macrostylis metallicola spec. nov., is a typical representative of Macrostylidae as recognizable from the fossosoma, prognathous cephalothorax, and styliform uropods. It can be morphologically distinguished from congeners by a combination of character states which include the autapomorphic shape of the first pleopod of the copulatory male. A sexual dimorphism, as expressed by a peculiar sequence of article length-width ratios of the male antennula, indicates a relationship with M. marionaeKniesz, Brandt & Riehl (2018) and M. longipesHansen (1916) amongst other species sharing this dimorphism. Mitochondrial genetic markers point in a similar direction. M. metallicola appears to be amongst the more common and widely distributed components of the benthic macrofauna in this region which may suggest a resilience of this species to future mining activities because of its apparent potential for recolonization of impacted sites from adjacent areas of particular environmental interest. The genetic data, however, show geographic clustering of its genetic variability, pointing towards a limited potential for dispersal. Local extinction of populations could potentially not be compensated quickly and would mean a loss of genetic diversity of this species.
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Affiliation(s)
- Torben Riehl
- Department of Marine Zoology, Section Crustacea, Senckenberg Research Institute and Natural History Museum, Frankfurt am Main, Germany.,Institute for Ecology, Evolution and Diversity, Johann Wolfgang Goethe Universität Frankfurt am Main, Frankfurt am Main, Germany.,Centre for Natural History, Zoological Museum, Universität Hamburg, Hamburg, Germany
| | - Bart De Smet
- Department of Biology, Marine Biology Research Group, Ghent University, Ghent, Belgium
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Bogantes VE, Whelan NV, Webster K, Mahon AR, Halanych KM. Unrecognized diversity of a scale worm,Polyeunoa laevis(Annelida: Polynoidae), that feeds on soft coral. ZOOL SCR 2019. [DOI: 10.1111/zsc.12400] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Viktoria E. Bogantes
- Department of Biological Sciences Molette Biology Laboratory for Environmental and Climate Change Studies Auburn University Auburn AL USA
| | - Nathan V. Whelan
- Southeast Conservation Genetics Lab Warm Springs Fish Technology Center United States Fish and Wildlife Service Auburn AL USA
- School of Fisheries, Aquaculture, and Aquatic Sciences Auburn University Auburn AL USA
| | - Katelynn Webster
- Department of Biological Sciences Molette Biology Laboratory for Environmental and Climate Change Studies Auburn University Auburn AL USA
| | - Andrew R. Mahon
- Department of Biology Central Michigan University Mount Pleasant MI USA
| | - Kenneth M. Halanych
- Department of Biological Sciences Molette Biology Laboratory for Environmental and Climate Change Studies Auburn University Auburn AL USA
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Linse K, Copley JT, Connelly DP, Larter RD, Pearce DA, Polunin NVC, Rogers AD, Chen C, Clarke A, Glover AG, Graham AGC, Huvenne VAI, Marsh L, Reid WDK, Roterman CN, Sweeting CJ, Zwirglmaier K, Tyler PA. Fauna of the Kemp Caldera and its upper bathyal hydrothermal vents (South Sandwich Arc, Antarctica). ROYAL SOCIETY OPEN SCIENCE 2019; 6:191501. [PMID: 31827872 PMCID: PMC6894572 DOI: 10.1098/rsos.191501] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/29/2019] [Accepted: 10/23/2019] [Indexed: 05/24/2023]
Abstract
Faunal assemblages at hydrothermal vents associated with island-arc volcanism are less well known than those at vents on mid-ocean ridges and back-arc spreading centres. This study characterizes chemosynthetic biotopes at active hydrothermal vents discovered at the Kemp Caldera in the South Sandwich Arc. The caldera hosts sulfur and anhydrite vent chimneys in 1375-1487 m depth, which emit sulfide-rich fluids with temperatures up to 212°C, and the microbial community of water samples in the buoyant plume rising from the vents was dominated by sulfur-oxidizing Gammaproteobacteria. A total of 12 macro- and megafaunal taxa depending on hydrothermal activity were collected in these biotopes, of which seven species were known from the East Scotia Ridge (ESR) vents and three species from vents outside the Southern Ocean. Faunal assemblages were dominated by large vesicomyid clams, actinostolid anemones, Sericosura sea spiders and lepetodrilid and cocculinid limpets, but several taxa abundant at nearby ESR hydrothermal vents were rare such as the stalked barnacle Neolepas scotiaensis. Multivariate analysis of fauna at Kemp Caldera and vents in neighbouring areas indicated that the Kemp Caldera is most similar to vent fields in the previously established Southern Ocean vent biogeographic province, showing that the species composition at island-arc hydrothermal vents can be distinct from nearby seafloor-spreading systems. δ 13C and δ 15N isotope values of megafaunal species analysed from the Kemp Caldera were similar to those of the same or related species at other vent fields, but none of the fauna sampled at Kemp Caldera had δ 13C values, indicating nutritional dependence on Epsilonproteobacteria, unlike fauna at other island-arc hydrothermal vents.
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Affiliation(s)
- Katrin Linse
- British Antarctic Survey, High Cross, Madingley Road, Cambridge CB3 0ET, UK
| | - Jonathan T. Copley
- Ocean and Earth Science, University of Southampton, Waterfront Campus, Southampton SO14 3ZH, UK
| | | | - Robert D. Larter
- British Antarctic Survey, High Cross, Madingley Road, Cambridge CB3 0ET, UK
| | - David A. Pearce
- British Antarctic Survey, High Cross, Madingley Road, Cambridge CB3 0ET, UK
| | - Nick V. C. Polunin
- School of Natural and Environmental Sciences, Newcastle University, Ridley Building, Newcastle upon Tyne NE1 7RU, UK
| | - Alex D. Rogers
- Department of Zoology, University of Oxford, South Parks Road, Oxford OX1 3PS, UK
| | - Chong Chen
- X-STAR, Japan Agency for Marine-Earth Science and Technology (JAMSTEC), 2-15 Natsushima-cho, Yokosuka 237-0061, Kanagawa Pref. Japan
| | - Andrew Clarke
- British Antarctic Survey, High Cross, Madingley Road, Cambridge CB3 0ET, UK
| | - Adrian G. Glover
- Life Sciences Department, Natural History Museum, Cromwell Road, London SW7 5BD, UK
| | | | | | - Leigh Marsh
- Ocean and Earth Science, University of Southampton, Waterfront Campus, Southampton SO14 3ZH, UK
| | - William D. K. Reid
- School of Natural and Environmental Sciences, Newcastle University, Ridley Building, Newcastle upon Tyne NE1 7RU, UK
| | - C. Nicolai Roterman
- Department of Zoology, University of Oxford, South Parks Road, Oxford OX1 3PS, UK
| | - Christopher J. Sweeting
- School of Natural and Environmental Sciences, Newcastle University, Ridley Building, Newcastle upon Tyne NE1 7RU, UK
| | - Katrin Zwirglmaier
- British Antarctic Survey, High Cross, Madingley Road, Cambridge CB3 0ET, UK
| | - Paul A. Tyler
- Ocean and Earth Science, University of Southampton, Waterfront Campus, Southampton SO14 3ZH, UK
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Pilkington LI. A Chemometric Analysis of Deep-Sea Natural Products. Molecules 2019; 24:molecules24213942. [PMID: 31683674 PMCID: PMC6865307 DOI: 10.3390/molecules24213942] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/07/2019] [Revised: 10/29/2019] [Accepted: 10/29/2019] [Indexed: 12/22/2022] Open
Abstract
Deep-sea natural products have been created by unique marine organisms that thrive in a challenging environment of extreme conditions for its inhabitants. In this study, 179 deep-sea natural products isolated from 2009 to 2013 were investigated by analysing their physicochemical properties that are important indicators of the ADMET (Absorption, Distribution, Metabolism, Excretion and Toxicity) profile of a compound. The study and analysis of these molecular descriptors and characteristics enabled the defining of these compounds in various chemical spaces, particularly as an indication of their drug-likeness and position in chemical space and is the first to be conducted to analyse deep-sea derived natural products. It was found that ~40% of all deep-sea natural products were drug-like and 2/3 were within Known Drug Space (KDS), highlighting the high drug-likeness of a significant proportion of deep-sea natural products, most of which have already been shown to have notable biological activities, that should be further investigated as potential therapeutics. Furthermore, this study was able to reveal the general structural differences between compounds from Animalia, Bacteria and Fungi organisms where it was observed that natural products from members of the Animalia kingdom are structurally more varied than compounds from bacteria and fungi. It was also noted that, in general, fungi-derived compounds occupy a more favourable position in drug-like chemical space and are a rich and promising source of biologically-active natural products for the purposes of drug development and therapeutic application.
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Affiliation(s)
- Lisa I Pilkington
- School of Chemical Sciences, The University of Auckland, Auckland 1010, New Zealand.
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38
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Antarctic food web architecture under varying dynamics of sea ice cover. Sci Rep 2019; 9:12454. [PMID: 31462668 PMCID: PMC6713710 DOI: 10.1038/s41598-019-48245-7] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/29/2018] [Accepted: 08/01/2019] [Indexed: 11/24/2022] Open
Abstract
In the Ross Sea, biodiversity organisation is strongly influenced by sea-ice cover, which is characterised by marked spatio-temporal variations. Expected changes in seasonal sea-ice dynamics will be reflected in food web architecture, providing a unique opportunity to study effects of climate change. Based on individual stable isotope analyses and the high taxonomic resolution of sampled specimens, we described benthic food webs in contrasting conditions of seasonal sea-ice persistence (early vs. late sea-ice break up) in medium-depth waters in Terra Nova Bay (Ross Sea). The architecture of biodiversity was reshaped by the pulsed input of sympagic food sources following sea-ice break up, with food web simplification, decreased intraguild predation, potential disturbance propagation and increased vulnerability to biodiversity loss. Following our approach, it was possible to describe in unprecedented detail the complex structure of biodiverse communities, emphasising the role of sympagic inputs, regulated by sea-ice dynamics, in structuring Antarctic medium-depth benthic food webs.
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39
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Boos H, Rodrigues C, Araujo PB. A retrospective analysis of scientific publications on the deep sea from 1987 to 2016. AN ACAD BRAS CIENC 2019; 91:e20180414. [PMID: 31411255 DOI: 10.1590/0001-3765201920180414] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/26/2018] [Accepted: 09/13/2018] [Indexed: 11/22/2022] Open
Abstract
The deep sea remains the least known biome. Despite this fact, anthropic activities have affected these regions in various ways. The objective of this study was to outline the scientific production scenario based on deep sea research and to analyze trends present in the literature. For this, the bibliographical resources available from the Web of Science (WoS) were surveyed. Between 1987 and 2016, 11,079 articles on the deep sea were published. Growth was over 100% from the first to second decade and 75% from the second to third. The most productive countries were the USA, Germany, France, England and Japan. Of the 404 journals that published articles on the deep sea, 10% accounted for approximately 60% of the total published articles. The keyword with the highest occurrence was "diversity". In the first two decades, the keywords with the greatest "strength" were related to research on mining, especially for hydrocarbons. The description of new species and the analysis of the effects of climate change appear to be emerging trends in deep sea research. Mining continues to be primarily responsible for driving the development of deep sea research.
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Affiliation(s)
- Harry Boos
- Centro Nacional de Pesquisa e Conservação da Biodiversidade Marinha do Sudeste e Sul/CEPSUL/ICMBio, Av. Carlos Ely Castro, 195, 88301-445 Itajaí, SC, Brazil.,Programa de Pós-Graduação em Biologia Animal, Universidade Federal do Rio Grande do Sul/UFRGS, Av. Bento Gonçalves, 9500, Prédio 43435, 91501-970 Porto Alegre, RS, Brazil
| | - Charles Rodrigues
- Biblioteca Pública Municipal e Escolar Norberto Candido Silveira Júnior, Rua Heitor Liberato, 1100, 88304-101 Itajaí, SC, Brazil
| | - Paula B Araujo
- Programa de Pós-Graduação em Biologia Animal, Universidade Federal do Rio Grande do Sul/UFRGS, Av. Bento Gonçalves, 9500, Prédio 43435, 91501-970 Porto Alegre, RS, Brazil
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40
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Fabri-Ruiz S, Danis B, David B, Saucède T. Can we generate robust species distribution models at the scale of the Southern Ocean? DIVERS DISTRIB 2018. [DOI: 10.1111/ddi.12835] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022] Open
Affiliation(s)
- Salomé Fabri-Ruiz
- Biogéosciences; UMR 6282 CNRS; Université Bourgogne Franche-Comté; Dijon France
| | - Bruno Danis
- Laboratoire de Biologie Marine; Université Libre de Bruxelles (ULB); Brussels Belgium
| | - Bruno David
- Biogéosciences; UMR 6282 CNRS; Université Bourgogne Franche-Comté; Dijon France
- Muséum national d'Histoire naturelle; Paris France
| | - Thomas Saucède
- Biogéosciences; UMR 6282 CNRS; Université Bourgogne Franche-Comté; Dijon France
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41
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Xiang P, Wang Y, Chen R, Zhao L, Wang C, Lin M. A bathypelagic ostracod Conchoecissa nigromaculatus sp. nov. (Myodocopa, Halocyprididae) from the South China Sea. PeerJ 2018; 6:e5557. [PMID: 30210944 PMCID: PMC6130238 DOI: 10.7717/peerj.5557] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/01/2018] [Accepted: 08/09/2018] [Indexed: 11/20/2022] Open
Abstract
Pelagic ostracods are one of the main groups of zooplankton and are abundant in marine ecosystems worldwide. The record of marine planktonic ostracod species in the central and southern part of the South China Sea accounts over for one-third of the total recorded marine planktonic ostracods in seas around China. In this study, we examined and compared the specimens from a recent cruise in this region that appeared to be different from previously described species of genus Conchoecissa, and then confirmed them as a new bathypelagic species Conchoecissa nigromaculatus. These specimens clearly differed from the other species of genus Conchoecissa with differences observed in the size, carapace, locations of glands, mandible, maxilla, sixth limb, and furca. In this species, mandibular coxal endite has no ventral finger process, maxilla has prominently large endites and has only two claws on the tip, the sixth limb has very simple endites, and this species has distinctive features not previously observed in the tribe Conchoeciini before. It is therefore necessary to emend the diagnosis of this group.
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Affiliation(s)
- Peng Xiang
- School of Life Science and Technology, Tongji University, Shanghai, China
- Laboratory of Marine Biology and Ecology, Third Institute of Oceanography, SOA, Xiamen, China
| | - Yu Wang
- Laboratory of Marine Biology and Ecology, Third Institute of Oceanography, SOA, Xiamen, China
| | - Ruixiang Chen
- Laboratory of Marine Biology and Ecology, Third Institute of Oceanography, SOA, Xiamen, China
| | - Liyuan Zhao
- Laboratory of Marine Biology and Ecology, Third Institute of Oceanography, SOA, Xiamen, China
| | - Chunguang Wang
- Laboratory of Marine Biology and Ecology, Third Institute of Oceanography, SOA, Xiamen, China
| | - Mao Lin
- Laboratory of Marine Biology and Ecology, Third Institute of Oceanography, SOA, Xiamen, China
- Collaborative Innovation Center of Deep Sea Biology, Hangzhou, China
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42
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Palma Esposito F, Ingham CJ, Hurtado-Ortiz R, Bizet C, Tasdemir D, de Pascale D. Isolation by Miniaturized Culture Chip of an Antarctic bacterium Aequorivita sp. with antimicrobial and anthelmintic activity. ACTA ACUST UNITED AC 2018; 20:e00281. [PMID: 30225207 PMCID: PMC6139392 DOI: 10.1016/j.btre.2018.e00281] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/16/2018] [Revised: 09/04/2018] [Accepted: 09/04/2018] [Indexed: 01/28/2023]
Abstract
Novel microbial isolation approach allowed the identification of a Gram-negative Antarctic bacterium belonging to the genus Aequorivita. Aequorivita sp. showed antimicrobial and anthelmintic activity without toxic effect towards eukaryotic cells. The whole genome of Aequorivita sp. was sequenced and compared with other strains to identify biosynthetic gene clusters. This novel approach represents a promising strategy to isolate rare or novel strains useful for biotechnological applications.
Microbes are prolific sources of bioactive molecules; however, the cultivability issue has severely hampered access to microbial diversity. Novel secondary metabolites from as-yet-unknown or atypical microorganisms from extreme environments have realistic potential to lead to new drugs with benefits for human health. Here, we used a novel approach that mimics the natural environment by using a Miniaturized Culture Chip allowing the isolation of several bacterial strains from Antarctic shallow water sediments under near natural conditions. A Gram-negative Antarctic bacterium belonging to the genus Aequorivita was subjected to further analyses. The Aequorivita sp. genome was sequenced and a bioinformatic approach was applied to identify biosynthetic gene clusters. The extract of the Aequorivita sp. showed antimicrobial and anthelmintic activity towards Multidrug resistant bacteria and the nematode Caenorhabditis elegans. This is the first multi-approach study exploring the genomics and biotechnological potential of the genus Aequorivita that is a promising candidate for pharmaceutical applications.
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Affiliation(s)
- Fortunato Palma Esposito
- Institute of Protein Biochemistry, National Research Council, Naples, 80131, Italy.,Marine Biotechnology Department, Stazione Zoologica Anton Dohrn, Villa Comunale, Naples, 80121, Italy
| | | | - Raquel Hurtado-Ortiz
- CIP-Collection of Institut Pasteur, Department of Microbiology, Institut Pasteur, Paris, 75015, France.,CRBIP-Biological Resource Centre, Department of Microbiology, Institut Pasteur, Paris, 75015, France
| | - Chantal Bizet
- CIP-Collection of Institut Pasteur, Department of Microbiology, Institut Pasteur, Paris, 75015, France.,CRBIP-Biological Resource Centre, Department of Microbiology, Institut Pasteur, Paris, 75015, France
| | - Deniz Tasdemir
- GEOMAR Centre for Marine Biotechnology (GEOMAR-Biotech), Research Unit Marine Natural Products Chemistry, GEOMAR Helmholtz Centre for Ocean Research Kiel, Kiel, 24106, Germany
| | - Donatella de Pascale
- Institute of Protein Biochemistry, National Research Council, Naples, 80131, Italy.,Marine Biotechnology Department, Stazione Zoologica Anton Dohrn, Villa Comunale, Naples, 80121, Italy
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43
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Christiansen H, Dettai A, Heindler FM, Collins MA, Duhamel G, Hautecoeur M, Steinke D, Volckaert FAM, Van de Putte AP. Diversity of Mesopelagic Fishes in the Southern Ocean - A Phylogeographic Perspective Using DNA Barcoding. Front Ecol Evol 2018. [DOI: 10.3389/fevo.2018.00120] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
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44
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Li F, Janussen D, Peifer C, Pérez-Victoria I, Tasdemir D. Targeted Isolation of Tsitsikammamines from the Antarctic Deep-Sea Sponge Latrunculia biformis by Molecular Networking and Anticancer Activity. Mar Drugs 2018; 16:md16080268. [PMID: 30072656 PMCID: PMC6117724 DOI: 10.3390/md16080268] [Citation(s) in RCA: 40] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/02/2018] [Revised: 07/23/2018] [Accepted: 07/30/2018] [Indexed: 12/12/2022] Open
Abstract
The Antarctic deep-sea sponge Latrunculia (Latrunculia) biformis Kirkpatrick, 1908 (Class Demospongiae Sollas, Order Poecilosclerida Topsent, Latrunculiidae Topsent) was selected for chemical analyses due to its potent anticancer activity. Metabolomic analysis of its crude extract by HRMS/MS-based molecular networking showed the presence of several clusters of pyrroloiminoquinone alkaloids, i.e., discorhabdin and epinardin-type brominated pyridopyrroloquinolines and tsitsikammamines, the non-brominated bis-pyrroloiminoquinones. Molecular networking approach combined with a bioactivity-guided isolation led to the targeted isolation of the known pyrroloiminoquinone tsitsikammamine A (1) and its new analog 16,17-dehydrotsitsikammamine A (2). The chemical structures of the compounds 1 and 2 were elucidated by spectroscopic analysis (one-dimensional (1D) and two-dimensional (2D) NMR, HR-ESIMS). Due to minute amounts, molecular modeling and docking was used to assess potential affinities to potential targets of the isolated compounds, including DNA intercalation, topoisomerase I-II, and indoleamine 2,3-dioxygenase enzymes. Tsitsikammamines represent a small class of pyrroloiminoquinone alkaloids that have only previously been reported from the South African sponge genus Tsitsikamma Samaai & Kelly and an Australian species of the sponge genus Zyzzya de Laubenfels. This is the first report of tsitsikammamines from the genus Latrunculia du Bocage and the successful application of molecular networking in the identification of comprehensive chemical inventory of L.biformis followed by targeted isolation of new molecules. This study highlights the high productivity of secondary metabolites of Latrunculia sponges and may shed new light on their biosynthetic origin and chemotaxonomy.
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Affiliation(s)
- Fengjie Li
- GEOMAR Centre for Marine Biotechnology (GEOMAR-Biotech), Marine Natural Products Research Unit Chemistry, GEOMAR Helmholtz Centre for Ocean Research Kiel, Am Kiel-Kanal 44, 24106 Kiel, Germany.
| | - Dorte Janussen
- Senckenberg Research Institute and Natural History Museum, Senckenberganlage 25, 60325 Frankfurt, Germany.
| | - Christian Peifer
- Pharmaceutical Chemistry, Kiel University, Gutenbergstraße 76, 24118 Kiel, Germany.
| | - Ignacio Pérez-Victoria
- Fundación MEDINA, Parque Tecnológico de la Salud, Av. Conocimiento 18016 Granada, Spain.
| | - Deniz Tasdemir
- GEOMAR Centre for Marine Biotechnology (GEOMAR-Biotech), Marine Natural Products Research Unit Chemistry, GEOMAR Helmholtz Centre for Ocean Research Kiel, Am Kiel-Kanal 44, 24106 Kiel, Germany.
- Faculty of Mathematics and Natural Sciences, Kiel University, Christian-Albrechts-Platz 4, 24118 Kiel, Germany.
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46
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Krzeminska M, Sicinski J, Kuklinski P. Biodiversity and biogeographic affiliation of Bryozoa from King George Island (Antarctica). SYST BIODIVERS 2018. [DOI: 10.1080/14772000.2018.1457099] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/17/2022]
Affiliation(s)
- Malgorzata Krzeminska
- Institute of Oceanology, Polish Academy of Sciences, Powstancow Warszawy 55, 81-712, Sopot, Poland
| | - Jacek Sicinski
- Laboratory of Polar Biology and Oceanobiology, University of Lodz, 12/16 Banacha Street, 90-237 Lodz, Poland
| | - Piotr Kuklinski
- Institute of Oceanology, Polish Academy of Sciences, Powstancow Warszawy 55, 81-712, Sopot, Poland
- Natural History Museum, Cromwell Road, London SW7 5BD, UK
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47
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Li S, Mou Q, Xu X, Qi S, Leung PHM. Synergistic antibacterial activity between penicillenols and antibiotics against methicillin-resistant Staphylococcus aureus. ROYAL SOCIETY OPEN SCIENCE 2018; 5:172466. [PMID: 29892433 PMCID: PMC5990757 DOI: 10.1098/rsos.172466] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/31/2017] [Accepted: 04/18/2018] [Indexed: 06/08/2023]
Abstract
Penicillenol A2 (isolated from deep-sea fungus Penicillium biourgeianum DFFSCS023) has good antibacterial activity against methicillin-sensitive Staphylococcus aureus and in combination with beta-lactam antibiotics it could significantly decrease methicillin-resistant Staphylococcus aureus (MRSA) survival, which provides a novel treatment consideration for MRSA-caused infections.
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Affiliation(s)
- Shuihong Li
- Hunan Province Cooperative Innovation Center for Molecular Target New Drug Study, Institute of Pathogenic Biology, Medical College, University of South China, Hengyang 421001, People's Republic of China
| | - Qianqian Mou
- Department of Health Technology and Informatics, Hong Kong Polytechnic University, Hong Kong 999077, People's Republic of China
| | - Xinya Xu
- Key Laboratory of Tropical Marine Bio-resources and Ecology, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Guangzhou 510301, People's Republic of China
| | - Shuhua Qi
- Key Laboratory of Tropical Marine Bio-resources and Ecology, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Guangzhou 510301, People's Republic of China
| | - Polly H. M. Leung
- Department of Health Technology and Informatics, Hong Kong Polytechnic University, Hong Kong 999077, People's Republic of China
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Chenuil A, Saucède T, Hemery LG, Eléaume M, Féral JP, Améziane N, David B, Lecointre G, Havermans C. Understanding processes at the origin of species flocks with a focus on the marine Antarctic fauna. Biol Rev Camb Philos Soc 2017; 93:481-504. [DOI: 10.1111/brv.12354] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/10/2017] [Revised: 06/20/2017] [Accepted: 06/27/2017] [Indexed: 01/29/2023]
Affiliation(s)
- Anne Chenuil
- Institut Méditerranéen de Biodiversité et d'Ecologie marine et continentale (IMBE-UMR7263); Aix-Marseille Univ, Univ Avignon, CNRS, IRD, Station Marine d'Endoume, Chemin de la Batterie des Lions; F-13007 Marseille France
| | - Thomas Saucède
- UMR6282 Biogéosciences; CNRS - Université de Bourgogne Franche-Comté, 6 boulevard Gabriel; F-21000 Dijon France
| | - Lenaïg G. Hemery
- DMPA, UMR 7208 BOREA/MNHN/CNRS/Paris VI/ Univ Caen, 57 rue Cuvier; 75231 Paris Cedex 05 France
| | - Marc Eléaume
- UMR7205 Institut de Systématique; Evolution et Biodiversité, CNRS-MNHN-UPMC-EPHE, CP 24, Muséum national d'Histoire naturelle, 57 rue Cuvier; 75005 Paris France
| | - Jean-Pierre Féral
- Institut Méditerranéen de Biodiversité et d'Ecologie marine et continentale (IMBE-UMR7263); Aix-Marseille Univ, Univ Avignon, CNRS, IRD, Station Marine d'Endoume, Chemin de la Batterie des Lions; F-13007 Marseille France
| | - Nadia Améziane
- UMR7205 Institut de Systématique; Evolution et Biodiversité, CNRS-MNHN-UPMC-EPHE, CP 24, Muséum national d'Histoire naturelle, 57 rue Cuvier; 75005 Paris France
| | - Bruno David
- UMR6282 Biogéosciences; CNRS - Université de Bourgogne Franche-Comté, 6 boulevard Gabriel; F-21000 Dijon France
- Muséum national d'Histoire naturelle, 57 rue Cuvier; 75005 Paris France
| | - Guillaume Lecointre
- UMR7205 Institut de Systématique; Evolution et Biodiversité, CNRS-MNHN-UPMC-EPHE, CP 24, Muséum national d'Histoire naturelle, 57 rue Cuvier; 75005 Paris France
| | - Charlotte Havermans
- Marine Zoology, Bremen Marine Ecology (BreMarE); University of Bremen, PO Box 330440; 28334 Bremen Germany
- Alfred Wegener Institute Helmholtz Centre for Polar and Marine Research, Am Handelshafen 12; D-27570 Bremerhaven Germany
- OD Natural Environment; Royal Belgian Institute of Natural Sciences, Rue Vautier 29; B-1000 Brussels Belgium
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49
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De Groote A, Hauquier F, Vanreusel A, Derycke S. Population genetic structure in Sabatieria (Nematoda) reveals intermediary gene flow and admixture between distant cold seeps from the Mediterranean Sea. BMC Evol Biol 2017; 17:154. [PMID: 28668078 PMCID: PMC5494145 DOI: 10.1186/s12862-017-1003-2] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/26/2017] [Accepted: 06/21/2017] [Indexed: 11/21/2022] Open
Abstract
BACKGROUND There is a general lack of information on the dispersal and genetic structuring for populations of small-sized deep-water taxa, including free-living nematodes which inhabit and dominate the seafloor sediments. This is also true for unique and scattered deep-sea habitats such as cold seeps. Given the limited dispersal capacity of marine nematodes, genetic differentiation between such geographically isolated habitat patches is expected to be high. Against this background, we examined genetic variation in both mitochondrial (COI) and nuclear (18S and 28S ribosomal) DNA markers of 333 individuals of the genus Sabatieria, abundantly present in reduced cold-seep sediments. Samples originated from four Eastern Mediterranean cold seeps, separated by hundreds of kilometers, and one seep in the Southeast Atlantic. RESULTS Individuals from the Mediterranean and Atlantic were divided into two separate but closely-related species clades. Within the Eastern Mediterranean, all specimens belonged to a single species, but with a strong population genetic structure (ΦST = 0.149). The haplotype network of COI contained 19 haplotypes with the most abundant haplotype (52% of the specimens) shared between all four seeps. The number of private haplotypes was high (15), but the number of mutations between haplotypes was low (1-8). These results indicate intermediary gene flow among the Mediterranean Sabatieria populations with no evidence of long-term barriers to gene flow. CONCLUSIONS The presence of shared haplotypes and multiple admixture events indicate that Sabatieria populations from disjunct cold seeps are not completely isolated, with gene flow most likely facilitated through water current transportation of individuals and/or eggs. Genetic structure and molecular diversity indices are comparable to those of epiphytic shallow-water marine nematodes, while no evidence of sympatric cryptic species was found for the cold-seep Sabatieria.
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Affiliation(s)
- Annelies De Groote
- Marine Biology Research Group, Biology Department, Ghent University, Krijgslaan 281, 9000 Ghent, Belgium
| | - Freija Hauquier
- Marine Biology Research Group, Biology Department, Ghent University, Krijgslaan 281, 9000 Ghent, Belgium
| | - Ann Vanreusel
- Marine Biology Research Group, Biology Department, Ghent University, Krijgslaan 281, 9000 Ghent, Belgium
| | - Sofie Derycke
- Marine Biology Research Group, Biology Department, Ghent University, Krijgslaan 281, 9000 Ghent, Belgium
- Operational Directorate Taxonomy and Phylogeny, Royal Belgian Institute of Natural Sciences (RBINS), Rue Vautier 29, 1000 Brussels, Belgium
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50
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Taylor ML, Rogers AD. Primnoidae (Cnidaria: Octocorallia) of the SW Indian Ocean: new species, genus revisions and systematics. Zool J Linn Soc 2017. [DOI: 10.1093/zoolinnean/zlx003] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]
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