1
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Hou Z, Jena R, McDaniel TJ, Billow BS, Lee S, Barr HI, Odom AL. Modeling Complex Ligands for High Oxidation State Catalysis: Titanium Hydroamination with Unsymmetrical Ligands. ACS Catal 2024; 14:5531-5538. [PMID: 38660613 PMCID: PMC11036360 DOI: 10.1021/acscatal.3c05658] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/21/2023] [Revised: 03/13/2024] [Accepted: 03/14/2024] [Indexed: 04/26/2024]
Abstract
A method for modeling high oxidation state catalysts is used on precatalysts with unsymmetrical and symmetrical bidentate ligands to get a more detailed understanding of how changes to ancillary ligands affect the hydroamination of alkynes catalyzed by titanium. To model the electronic donor ability, the ligand donor parameter (LDP) was used, and to model the steric effects, percent buried volume (% Vbur) was employed. For the modeling study, 7 previously unpublished unsymmetrical Ti(XX')(NMe2)2 precatalysts were prepared, where XX' is a chelating ligand with pyrrolyl/indolyl linkages. The rates of these unsymmetrical and 10 previously reported symmetrical precatalysts were used with the model kobs = a + b(LDP)1 + c(LDP)2 + d(% Vbur)1 + e(% Vbur)2, where a-e were found through least-squares refinement. The model suggests that (1) the two attachment points of the bidentate ligand XX' are in different environments on the metal (e.g., axial and equatorial in a trigonal bipyramidal or square pyramidal structure), (2) the position of the unsymmetrical ligand on the metal is determined by the electronics of the ligand rather than the sterics, and (3) that one side of the chelating ligand's electronics strongly influences the rate, while the other side's sterics more strongly influences the rate. From these studies, we were able to generate catalysts fitting to this model with rate constants larger than the fastest symmetrical catalyst tested.
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Affiliation(s)
- Zhilin Hou
- Department of Chemistry, Michigan
State University, 578 S. Shaw Ln, East Lansing, Michigan 48824, United States
| | - Rashmi Jena
- Department of Chemistry, Michigan
State University, 578 S. Shaw Ln, East Lansing, Michigan 48824, United States
| | - Tanner J. McDaniel
- Department of Chemistry, Michigan
State University, 578 S. Shaw Ln, East Lansing, Michigan 48824, United States
| | - Brennan S. Billow
- Department of Chemistry, Michigan
State University, 578 S. Shaw Ln, East Lansing, Michigan 48824, United States
| | - Seokjoo Lee
- Department of Chemistry, Michigan
State University, 578 S. Shaw Ln, East Lansing, Michigan 48824, United States
| | - Hannah I. Barr
- Department of Chemistry, Michigan
State University, 578 S. Shaw Ln, East Lansing, Michigan 48824, United States
| | - Aaron L. Odom
- Department of Chemistry, Michigan
State University, 578 S. Shaw Ln, East Lansing, Michigan 48824, United States
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2
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Escayola S, Bahri-Laleh N, Poater A. % VBur index and steric maps: from predictive catalysis to machine learning. Chem Soc Rev 2024; 53:853-882. [PMID: 38113051 DOI: 10.1039/d3cs00725a] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2023]
Abstract
Steric indices are parameters used in chemistry to describe the spatial arrangement of atoms or groups of atoms in molecules. They are important in determining the reactivity, stability, and physical properties of chemical compounds. One commonly used steric index is the steric hindrance, which refers to the obstruction or hindrance of movement in a molecule caused by bulky substituents or functional groups. Steric hindrance can affect the reactivity of a molecule by altering the accessibility of its reactive sites and influencing the geometry of its transition states. Notably, the Tolman cone angle and %VBur are prominent among these indices. Actually, steric effects can also be described using the concept of steric bulk, which refers to the space occupied by a molecule or functional group. Steric bulk can affect the solubility, melting point, boiling point, and viscosity of a substance. Even though electronic indices are more widely used, they have certain drawbacks that might shift preferences towards others. They present a higher computational cost, and often, the weight of electronics in correlation with chemical properties, e.g. binding energies, falls short in comparison to %VBur. However, it is worth noting that this may be because the steric index inherently captures part of the electronic content. Overall, steric indices play an important role in understanding the behaviour of chemical compounds and can be used to predict their reactivity, stability, and physical properties. Predictive chemistry is an approach to chemical research that uses computational methods to anticipate the properties and behaviour of these compounds and reactions, facilitating the design of new compounds and reactivities. Within this domain, predictive catalysis specifically targets the prediction of the performance and behaviour of catalysts. Ultimately, the goal is to identify new catalysts with optimal properties, leading to chemical processes that are both more efficient and sustainable. In this framework, %VBur can be a key metric for deepening our understanding of catalysis, emphasizing predictive catalysis and sustainability. Those latter concepts are needed to direct our efforts toward identifying the optimal catalyst for any reaction, minimizing waste, and reducing experimental efforts while maximizing the efficacy of the computational methods.
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Affiliation(s)
- Sílvia Escayola
- Institut de Química Computacional i Catàlisi and Departament de Química, Universitat de Girona, c/Mª Aurèlia Capmany 69, 17003 Girona, Catalonia, Spain.
- Donostia International Physics Center (DIPC), 20018 Donostia, Euskadi, Spain
| | - Naeimeh Bahri-Laleh
- Iran Polymer and Petrochemical Institute (IPPI), P.O. Box 14965/115, Tehran, Iran
- Institute for Sustainability with Knotted Chiral Meta Matter (WPI-SKCM), Hiroshima University, Hiroshima, 739-8526, Japan
| | - Albert Poater
- Institut de Química Computacional i Catàlisi and Departament de Química, Universitat de Girona, c/Mª Aurèlia Capmany 69, 17003 Girona, Catalonia, Spain.
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3
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Osenga V, Sykes NC, Pa S, Bambha MK, Schley ND, Johnson MW. Comparative Analysis of the Donor Properties of Isomeric Pyrrolyl Phosphine Ligands. Organometallics 2024; 43:14-20. [PMID: 38213984 PMCID: PMC10777409 DOI: 10.1021/acs.organomet.3c00467] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/06/2023] [Revised: 12/11/2023] [Accepted: 12/11/2023] [Indexed: 01/13/2024]
Abstract
Understanding the net donor and electronic properties of pyrrole-based phosphines is critical for guiding their use as ligands. In this study, we compare two isomeric 1- and 2-(diphenylphosphino)methylpyrroles (L1 and L2, respectively) to determine the degree to which N-(phosphino)pyrroles are distinct from aryl- and 2-pyrrolyl phosphines. Ruthenium, rhodium, platinum, and gold complexes as well as selenide derivatives of these ligands are examined using NMR and IR spectroscopy, X-ray crystallography, and cyclic voltammetry. Ligand L2 exhibits net donor properties similar to those of the o-tolyl analogue L3, while L1 shows attenuated electron donation ability. Additionally, a model nickel-catalyzed Kumada coupling reaction using these three ligands was investigated.
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Affiliation(s)
- Vicky
A. Osenga
- Department
of Chemistry, University of Richmond, Richmond, Virginia 23173, United States
| | - Nolan C. Sykes
- Department
of Chemistry, University of Richmond, Richmond, Virginia 23173, United States
| | - Sopheak Pa
- Department
of Chemistry, University of Richmond, Richmond, Virginia 23173, United States
| | - Michael K. Bambha
- Department
of Chemistry, University of Richmond, Richmond, Virginia 23173, United States
| | - Nathan D. Schley
- Department
of Chemistry, Vanderbilt University, Nashville, Tennessee 37235, United States
| | - Miles W. Johnson
- Department
of Chemistry, University of Richmond, Richmond, Virginia 23173, United States
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4
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Lv K, Zhang J, Liu X, Zhou Y, Liu K. Computer-aided accurate calculation of interacted volumes for 3D isosurface point clouds of molecular electrostatic potential. J Mol Graph Model 2024; 126:108648. [PMID: 37857113 DOI: 10.1016/j.jmgm.2023.108648] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/19/2023] [Revised: 09/22/2023] [Accepted: 10/03/2023] [Indexed: 10/21/2023]
Abstract
The quality of chiral environment (i.e. catalytic pocket) is directly related to the performance of chiral catalysts. The existing methods need super computing power and time, i.e., it is difficult to quickly judge the interaction between chiral catalysts and substrates for accurately evaluating the effects of chiral catalytic pockets. In this paper, for the 3D isosurface point clouds of molecular electrostatic potential, by using computer simulations, we propose a robust method to detect interacted points, and then accurately have the corresponding interacted volumes. First, by using the existing marching cubes algorithm, we construct the 3D models with triangular surface for isosurface point clouds of molecular electrostatic potentials. Second, by using our improved hierarchical bounding boxes algorithm, we significantly filter out most redundant non-collision points. Third, by using the normal vectors of the remaining points and related triangles, we robustly determine the interacted points to construct interacted sets. And finally, by combining the classical slicing with our multi-contour segmenting, we accurately calculate the interacted volumes. Over three groups of the point clouds of the chemical molecules, experimental results show that our method effectively removes the non-interacted points at average rates of 71.65%, 77.76%, and 71.82%, and calculates the interacted volumes with the average relative errors of 1.7%, 1.6%, and 1.9%, respectively.
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Affiliation(s)
- Kun Lv
- College of Electrical Engineering, Sichuan University, Chendu, Sichuan, 610065, China.
| | - Jin Zhang
- College of Electrical Engineering, Sichuan University, Chendu, Sichuan, 610065, China.
| | - Xiaohua Liu
- Key Laboratory of Green Chemistry & Technology, Ministry of Education, College of Chemistry, Sichuan University, Chendu, Sichuan, 610064, China.
| | - Yuqiao Zhou
- Key Laboratory of Green Chemistry & Technology, Ministry of Education, College of Chemistry, Sichuan University, Chendu, Sichuan, 610064, China.
| | - Kai Liu
- College of Electrical Engineering, Sichuan University, Chendu, Sichuan, 610065, China.
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5
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van der Westhuizen D, Castro AC, Hazari N, Gevorgyan A. Bulky, electron-rich, renewable: analogues of Beller's phosphine for cross-couplings. Catal Sci Technol 2023; 13:6733-6742. [PMID: 38026730 PMCID: PMC10680433 DOI: 10.1039/d3cy01375h] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/03/2023] [Accepted: 10/30/2023] [Indexed: 12/01/2023]
Abstract
In recent years, considerable progress has been made in the conversion of biomass into renewable chemicals, yet the range of value-added products that can be formed from biomass remains relatively small. Herein, we demonstrate that molecules available from biomass serve as viable starting materials for the synthesis of phosphine ligands, which can be used in homogeneous catalysis. Specifically, we prepared renewable analogues of Beller's ligand (di(1-adamantyl)-n-butylphosphine, cataCXium® A), which is widely used in homogeneous catalysis. Our new renewable phosphine ligands facilitate Pd-catalysed Suzuki-Miyaura, Stille, and Buchwald-Hartwig coupling reactions with high yields, and our catalytic results can be rationalized based on the stereoelectronic properties of the ligands. The new phosphine ligands generate catalytic systems that can be applied for the late-stage functionalization of commercial drugs.
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Affiliation(s)
| | - Abril C Castro
- Hylleraas Centre for Quantum Molecular Sciences, Department of Chemistry, University of Oslo 0315 Oslo Norway
| | - Nilay Hazari
- Department of Chemistry, Yale University New Haven Connecticut 06520 USA
| | - Ashot Gevorgyan
- Department of Chemistry, UiT The Arctic University of Norway 9037 Tromsø Norway
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6
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P. M M, S N, Kulkarni NV, Jagirdar BR, Jones WD. Guerbet upgrading of ethanol to n-butanol using Ru( iii) catalysts under air. NEW J CHEM 2023. [DOI: 10.1039/d3nj00535f] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/05/2023]
Abstract
A series of in situ prepared Ru(iii) complexes supported by easily accessible N-donor organic pincer ligands were used as catalysts in the Guerbet upgrading reaction of ethanol under aerobic conditions.
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Affiliation(s)
- Mahitha P. M
- Department of Chemistry, Amrita Vishwa Vidyapeetham, Amritapuri 690525, Kerala, India
| | - Nakul S
- Department of Chemistry, Amrita Vishwa Vidyapeetham, Amritapuri 690525, Kerala, India
| | - Naveen V. Kulkarni
- Department of Chemistry, Amrita Vishwa Vidyapeetham, Amritapuri 690525, Kerala, India
| | - Balaji R. Jagirdar
- Department of Inorganic and Physical Chemistry, Indian Institute of Science, Bangalore 560012, Karnataka, India
| | - William D. Jones
- Department of Chemistry, University of Rochester, Rochester, New York 14450, USA
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7
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Nuñez Bahena E, Schafer LL. From Stoichiometric to Catalytic E–H Functionalization by Non-Metallocene Zirconium Complexes─Recent Advances and Mechanistic Insights. ACS Catal 2022. [DOI: 10.1021/acscatal.2c04308] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
Affiliation(s)
- Erick Nuñez Bahena
- Department of Chemistry, University of British Columbia, Vancouver, British Columbia V6T 1Z1, Canada
| | - Laurel L. Schafer
- Department of Chemistry, University of British Columbia, Vancouver, British Columbia V6T 1Z1, Canada
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8
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Pichugov AV, Bushkov NS, Rumyantsev AV, Zhizhin AA, Aleshin DY, Strelkova TV, Talanova VN, Takazova RU, Mance D, Allouche F, Mougel V, Dolgushin FM, Ustynyuk NA, Zhizhko PA, Zarubin DN. Design of 4‐Coordinate Ti Imido Aryloxide on the Surface of Silica for Catalytic Oxo/Imido Heterometathesis. Helv Chim Acta 2022. [DOI: 10.1002/hlca.202200030] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Affiliation(s)
- Andrey V. Pichugov
- A N Nesmeyanov Institute of Organoelement Compounds RAS: Institut elementoorganiceskih soedinenij imeni A N Nesmeanova RAN Laboratory of Organometallic Compounds RUSSIAN FEDERATION
| | - Nikolai S. Bushkov
- A N Nesmeyanov Institute of Organoelement Compounds RAS: Institut elementoorganiceskih soedinenij imeni A N Nesmeanova RAN Laboratory of Organometallic Compounds RUSSIAN FEDERATION
| | - Andrey V. Rumyantsev
- A N Nesmeyanov Institute of Organoelement Compounds RAS: Institut elementoorganiceskih soedinenij imeni A N Nesmeanova RAN Laboratory of Organometallic Compounds RUSSIAN FEDERATION
| | - Anton A. Zhizhin
- A N Nesmeyanov Institute of Organoelement Compounds RAS: Institut elementoorganiceskih soedinenij imeni A N Nesmeanova RAN Laboratory of Organometallic Compounds RUSSIAN FEDERATION
| | - Dmitry Yu. Aleshin
- A N Nesmeyanov Institute of Organoelement Compounds RAS: Institut elementoorganiceskih soedinenij imeni A N Nesmeanova RAN Laboratory of Nuclear Magnetic Resonance RUSSIAN FEDERATION
| | - Tatyana V. Strelkova
- A N Nesmeyanov Institute of Organoelement Compounds RAS: Institut elementoorganiceskih soedinenij imeni A N Nesmeanova RAN Laboratory of Nuclear Magnetic Resonance RUSSIAN FEDERATION
| | - Valeria N. Talanova
- A N Nesmeyanov Institute of Organoelement Compounds RAS: Institut elementoorganiceskih soedinenij imeni A N Nesmeanova RAN Laboratory of Microanalysis RUSSIAN FEDERATION
| | - Rina U. Takazova
- A N Nesmeyanov Institute of Organoelement Compounds RAS: Institut elementoorganiceskih soedinenij imeni A N Nesmeanova RAN Laboratory of Microanalysis RUSSIAN FEDERATION
| | - Deni Mance
- ETH Zürich: Eidgenossische Technische Hochschule Zurich DCHAB SWITZERLAND
| | - Florian Allouche
- ETH Zürich: Eidgenossische Technische Hochschule Zurich DCHAB SWITZERLAND
| | - Victor Mougel
- ETH Zürich: Eidgenossische Technische Hochschule Zurich DCHAB SWITZERLAND
| | - Fedor M. Dolgushin
- Kurnakov Institute of General and Inorganic Chemistry RAS: Institut obsej i neorganiceskoj himii imeni N S Kurnakova RAN X-ray RUSSIAN FEDERATION
| | - Nikolai A. Ustynyuk
- A N Nesmeyanov Institute of Organoelement Compounds RAS: Institut elementoorganiceskih soedinenij imeni A N Nesmeanova RAN Laboratory of Organometallic Compounds RUSSIAN FEDERATION
| | - Pavel A. Zhizhko
- A. N. Nesmeyanov Institute of Organoelement Compounds, Russian Academy of Sciences Laboratory for Organometallic Compounds Vavilov str., 28 119991 Moscow RUSSIAN FEDERATION
| | - Dmitry N. Zarubin
- A N Nesmeyanov Institute of Organoelement Compounds RAS: Institut elementoorganiceskih soedinenij imeni A N Nesmeanova RAN Laboratory of Organometallic Compounds RUSSIAN FEDERATION
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9
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Mo L, Barr HI, Odom AL. Investigation of Phosphine Donor Properties to Vanadium(V) Nitrides. RESULTS IN CHEMISTRY 2022. [DOI: 10.1016/j.rechem.2022.100344] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022] Open
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10
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Ciancaleoni G, Marchetti F, Santi C, Merlino O, Zacchini S. Assessing the effects of covalent, dative and halogen bonds on the electronic structure of selenoamides. NEW J CHEM 2022. [DOI: 10.1039/d2nj01421a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The C–NMe2 bond rotation of a selenoamide is proposed as an experimental probe to compare different chemical interactions.
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Affiliation(s)
- Gianluca Ciancaleoni
- Dipartimento di Chimica e Chimica Industriale, Università degli studi di Pisa, via Giuseppe Moruzzi 13, 56124, Italy
| | - Fabio Marchetti
- Dipartimento di Chimica e Chimica Industriale, Università degli studi di Pisa, via Giuseppe Moruzzi 13, 56124, Italy
| | - Claudio Santi
- Dipartimento di Scienze Farmaceutiche, Università degli studi di Perugia, via del Liceo, 06132, Perugia, Italy
| | - Orsola Merlino
- Dipartimento di Scienze Farmaceutiche, Università degli studi di Perugia, via del Liceo, 06132, Perugia, Italy
| | - Stefano Zacchini
- Dipartimento di Chimica Fisica ed Inorganica, Università di Bologna, viale Risorgimento 4, 40136 Bologna, Italy
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11
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Aldrich KE, Livshits MY, Stromberg LR, Janicke MT, Nhu Lam M, Stein B, Wagner GL, Abergel RJ, Mukundan H, Kozimor SA, Lilley LM. Th IV-Desferrioxamine: characterization of a fluorescent bacterial probe. Dalton Trans 2021; 50:15310-15320. [PMID: 34636377 DOI: 10.1039/d1dt02177j] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Diversifying our ability to guard against emerging pathogenic threats is essential for keeping pace with global health challenges, including those presented by drug-resistant bacteria. Some modern diagnostic and therapeutic innovations to address this challenge focus on targeting methods that exploit bacterial nutrient sequestration pathways, such as the desferrioxamine (DFO) siderophore used by Staphylococcus aureus (S. aureus) to sequester FeIII. Building on recent studies that have shown DFO to be a versatile vehicle for chemical delivery, we show proof-of-principle that the FeIII sequestration pathway can be used to deliver a potential radiotherapeutic. Our approach replaces the FeIII nutrient sequestered by H4DFO+ with ThIV and made use of a common fluorophore, FITC, which we covalently bonded to DFO to provide a combinatorial probe for simultaneous chelation paired with imaging and spectroscopy, H3DFO_FITC. Combining insight provided from FITC-based imaging with characterization by NMR spectroscopy, we demonstrated that the fluorescent DFO_FITC conjugate retained the ThIV chelation properties of native H4DFO+. Fluorescence microscopy with both [Th(DFO_FITC)] and [Fe(DFO_FITC)] complexes showed similar uptake by S. aureus and increased intercellular accumulation as compared to the FITC and unchelated H3DFO_FITC controls. Collectively, these results demonstrate the potential for the newly developed H3DFO_FITC conjugate to be used as a targeting vector and bacterial imaging probe for S. aureus. The results presented within provide a framework to expand H4DFO+ and H3DFO_FITC to relevant radiotherapeutics (like 227Th).
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Affiliation(s)
| | | | | | | | - Mila Nhu Lam
- Los Alamos National Laboratory, Los Alamos, New Mexico, 87545, USA.
| | - Benjamin Stein
- Los Alamos National Laboratory, Los Alamos, New Mexico, 87545, USA.
| | | | - Rebecca J Abergel
- Department of Chemistry, University of California, Berkeley, California, 94720, USA
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12
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Reviejo I, Vinueza J, Ramos J, Mosquera MEG, Tabernero V, Jiménez G. Stereospecific Synthesis of Chiral Titanium Complexes Bearing a Bifunctionalized Cyclopentadienyl-Terpenoid Ligand Derived from α-Pinene. Organometallics 2021. [DOI: 10.1021/acs.organomet.1c00421] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Irene Reviejo
- Organic Chemistry and Inorganic Chemistry Department, Departamento de Química Orgánica y Química Inorgánica, Instituto de Investigación “Andrés M. Del Río” (IQAR), Universidad de Alcalá, Campus Universitario, 28805 Alcalá de Henares, Spain
| | - Joan Vinueza
- Organic Chemistry and Inorganic Chemistry Department, Departamento de Química Orgánica y Química Inorgánica, Instituto de Investigación “Andrés M. Del Río” (IQAR), Universidad de Alcalá, Campus Universitario, 28805 Alcalá de Henares, Spain
| | - Javier Ramos
- Macromolecular Physics Department, Instituto de Estructura de la Materia, Consejo Superior de Investigaciones Científicas, Serrano 113bis, 28006, Madrid, Spain
| | - Marta E. G. Mosquera
- Organic Chemistry and Inorganic Chemistry Department, Departamento de Química Orgánica y Química Inorgánica, Instituto de Investigación “Andrés M. Del Río” (IQAR), Universidad de Alcalá, Campus Universitario, 28805 Alcalá de Henares, Spain
| | - Vanessa Tabernero
- Organic Chemistry and Inorganic Chemistry Department, Departamento de Química Orgánica y Química Inorgánica, Instituto de Investigación “Andrés M. Del Río” (IQAR), Universidad de Alcalá, Campus Universitario, 28805 Alcalá de Henares, Spain
| | - Gerardo Jiménez
- Organic Chemistry and Inorganic Chemistry Department, Departamento de Química Orgánica y Química Inorgánica, Instituto de Investigación “Andrés M. Del Río” (IQAR), Universidad de Alcalá, Campus Universitario, 28805 Alcalá de Henares, Spain
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13
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Sarkar S, Sarkar P, Ghosh P. Heteroditopic Macrobicyclic Molecular Vessels for Single Step Aerial Oxidative Transformation of Primary Alcohol Appended Cross Azobenzenes. J Org Chem 2021; 86:6648-6664. [PMID: 33908241 DOI: 10.1021/acs.joc.1c00409] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
A series of oxy-ether tris-amino heteroditopic macrobicycles (L1-L4) with various cavity dimensions have been synthesized and explored for their Cu(II) catalyzed selective single step aerial oxidative cross-coupling of primary alcohol based anilines with several aromatic amines toward the formation of primary alcohol appended cross azobenzenes (POCABs). The beauty of this transformation is that the easily oxidizable benzyl/primary alcohol group remains unhampered during the course of this oxidation due to the protective oxy-ether pocket of this series of macrobicyclic vessels. Various dimensionalities of the molecular vessels have shown specific size complementary selection for substrates toward efficient syntheses of regioselective POCAB products. To establish the requirement of the three-dimensional cavity based additives, a particular catalytic reaction has been examined in the presence of macrobicycles (L2 and L3) versus macrocycles (MC1 and MC2) and tripodal acyclic (AC1 and AC2) analogous components, respectively. Subsequently, L1-L4 have been extensively utilized toward the syntheses of as many as 44 POCABs and are characterized by different spectroscopic techniques and single crystal X-ray diffraction studies.
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Affiliation(s)
- Sayan Sarkar
- School of Chemical Sciences, Indian Association for the Cultivation of Science, 2A & 2B Raja S. C. Mullick Road, Kolkata, 700032, India
| | - Piyali Sarkar
- School of Chemical Sciences, Indian Association for the Cultivation of Science, 2A & 2B Raja S. C. Mullick Road, Kolkata, 700032, India
| | - Pradyut Ghosh
- School of Chemical Sciences, Indian Association for the Cultivation of Science, 2A & 2B Raja S. C. Mullick Road, Kolkata, 700032, India
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14
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Paterson AL, Liu DJ, Kanbur U, Sadow AD, Perras FA. Observing the three-dimensional dynamics of supported metal complexes. Inorg Chem Front 2021. [DOI: 10.1039/d0qi01241f] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The dynamics of heterogeneous catalysts are linked to their activity and selectivity but are poorly understood. NMR enables for the determination of high-resolution dynamic structures for such sites and the mapping of accessible conformations.
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15
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See XY, Wen X, Wheeler TA, Klein CK, Goodpaster JD, Reiner BR, Tonks IA. Iterative Supervised Principal Component Analysis Driven Ligand Design for Regioselective Ti-Catalyzed Pyrrole Synthesis. ACS Catal 2020; 10:13504-13517. [PMID: 34327040 PMCID: PMC8318334 DOI: 10.1021/acscatal.0c03939] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Abstract
The rational design of catalysts remains a challenging endeavor within the broader chemical community owing to the myriad variables that can affect key bond-forming events. Designing selective catalysts for any reaction requires an efficient strategy for discovering predictive structure-activity relationships. Herein, we describe the use of iterative supervised principal component analysis (ISPCA) in de novo catalyst design. The regioselective synthesis of 2,5-dimethyl-1,3,4-triphenyl-1H-pyrrole (C) via a Ti-catalyzed formal [2 + 2 +1] cycloaddition of phenylpropyne and azobenzene was targeted as a proof of principle. The initial reaction conditions led to an unselective mixture of all possible pyrrole regioisomers. ISPCA was conducted on a training set of catalysts, and their performance was regressed against the scores from the top three principal components. Component loadings from this PCA space and k-means clustering were used to inform the design of new test catalysts. The selectivity of a prospective test set was predicted in silico using the ISPCA model, and optimal candidates were synthesized and tested experimentally. This data-driven predictive-modeling workflow was iterated, and after only three generations the catalytic selectivity was improved from 0.5 (statistical mixture of products) to over 11 (>90% C) by incorporating 2,6-dimethyl-4-(pyrrolidin-1-yl)pyridine as a ligand. The origin of catalyst selectivity was probed by examining ISPCA variable loadings in combination with DFT modeling, revealing that ligand lability plays an important role in selectivity. A parallel catalyst search using multivariate linear regression (MLR), a popular approach in catalysis informatics, was also conducted in order to compare these strategies in a hypothetical catalyst scouting campaign. ISPCA appears to be more robust and predictive than MLR when sparse training sets are used that are representative of the data available during the early search for an optimal catalyst. The successful development of a highly selective catalyst without resorting to long, stochastic screening processes demonstrates the inherent power of ISPCA in de novo catalyst design and should motivate the general use of ISPCA in reaction development.
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Affiliation(s)
- Xin Yi See
- Department of Chemistry, University of Minnesota-Twin Cities, Minneapolis, Minnesota 55455, United States
| | - Xuelan Wen
- Department of Chemistry, University of Minnesota-Twin Cities, Minneapolis, Minnesota 55455, United States
| | - T Alexander Wheeler
- Department of Chemistry, University of Minnesota-Twin Cities, Minneapolis, Minnesota 55455, United States
| | - Channing K Klein
- Department of Chemistry, University of Minnesota-Twin Cities, Minneapolis, Minnesota 55455, United States
| | - Jason D Goodpaster
- Department of Chemistry, University of Minnesota-Twin Cities, Minneapolis, Minnesota 55455, United States
| | - Benjamin R Reiner
- Department of Chemistry, University of Minnesota-Twin Cities, Minneapolis, Minnesota 55455, United States
| | - Ian A Tonks
- Department of Chemistry, University of Minnesota-Twin Cities, Minneapolis, Minnesota 55455, United States
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16
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Feng X, Song Y, Lin W. Transforming Hydroxide-Containing Metal–Organic Framework Nodes for Transition Metal Catalysis. TRENDS IN CHEMISTRY 2020. [DOI: 10.1016/j.trechm.2020.08.009] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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17
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Charles RM, Tupkar H, Helland SD, Mercado AA, Eckenhoff WT, Schley ND, DeYonker NJ, Brewster TP. Synthesis and Electronic Characterization of Iridium‐Aluminum and Rhodium‐Aluminum Heterobimetallic Complexes Bridged by 3‐Oxypyridine and 4‐Oxypyridine. Eur J Inorg Chem 2020. [DOI: 10.1002/ejic.201901317] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Affiliation(s)
- R. Malcolm Charles
- Department of Chemistry The University of Memphis 3744 Walker Avenue, Smith Chemistry Building 38152 Memphis Tennessee USA
| | - Hrishikesh Tupkar
- Department of Chemistry The University of Memphis 3744 Walker Avenue, Smith Chemistry Building 38152 Memphis Tennessee USA
| | - Sarah D. Helland
- Department of Chemistry Rhodes College 2000 N. Parkway 38112 Memphis Tennessee USA
| | - Angel A. Mercado
- Department of Chemistry The University of Memphis 3744 Walker Avenue, Smith Chemistry Building 38152 Memphis Tennessee USA
| | - William T. Eckenhoff
- Department of Chemistry Rhodes College 2000 N. Parkway 38112 Memphis Tennessee USA
| | - Nathan D. Schley
- Department of Chemistry Vanderbilt University 37235 Nashville Tennessee USA
| | - Nathan J. DeYonker
- Department of Chemistry The University of Memphis 3744 Walker Avenue, Smith Chemistry Building 38152 Memphis Tennessee USA
| | - Timothy P. Brewster
- Department of Chemistry The University of Memphis 3744 Walker Avenue, Smith Chemistry Building 38152 Memphis Tennessee USA
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18
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Zhizhko PA, Pichugov AV, Bushkov NS, Rumyantsev AV, Utegenov KI, Talanova VN, Strelkova TV, Lebedev D, Mance D, Zarubin DN. Catalytic Imido-Transfer Reactions of Well-Defined Silica-Supported Titanium Imido Complexes Prepared via Surface Organometallic Chemistry. Organometallics 2020. [DOI: 10.1021/acs.organomet.9b00779] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Pavel A. Zhizhko
- A. N. Nesmeyanov Institute of Organoelement Compounds, Russian Academy of Sciences, Vavilov str., 28, 119991 Moscow, Russia
| | - Andrey V. Pichugov
- A. N. Nesmeyanov Institute of Organoelement Compounds, Russian Academy of Sciences, Vavilov str., 28, 119991 Moscow, Russia
- Higher Chemical College, D. Mendeleev University of Chemical Technology of Russia, Miusskaya sq., 9, 125047 Moscow, Russia
| | - Nikolai S. Bushkov
- A. N. Nesmeyanov Institute of Organoelement Compounds, Russian Academy of Sciences, Vavilov str., 28, 119991 Moscow, Russia
- Department of Chemistry, Moscow State University, Vorob’evy Gory, 1, 119991 Moscow, Russia
| | - Andrey V. Rumyantsev
- A. N. Nesmeyanov Institute of Organoelement Compounds, Russian Academy of Sciences, Vavilov str., 28, 119991 Moscow, Russia
- Department of Chemistry, Moscow State University, Vorob’evy Gory, 1, 119991 Moscow, Russia
| | - Kamil I. Utegenov
- A. N. Nesmeyanov Institute of Organoelement Compounds, Russian Academy of Sciences, Vavilov str., 28, 119991 Moscow, Russia
| | - Valeria N. Talanova
- A. N. Nesmeyanov Institute of Organoelement Compounds, Russian Academy of Sciences, Vavilov str., 28, 119991 Moscow, Russia
| | - Tatyana V. Strelkova
- A. N. Nesmeyanov Institute of Organoelement Compounds, Russian Academy of Sciences, Vavilov str., 28, 119991 Moscow, Russia
| | - Dmitry Lebedev
- Department of Chemistry and Applied Biosciences, ETH Zürich, Vladimir-Prelog Weg, 1−5, CH-8093 Zürich, Switzerland
| | - Deni Mance
- Department of Chemistry and Applied Biosciences, ETH Zürich, Vladimir-Prelog Weg, 1−5, CH-8093 Zürich, Switzerland
| | - Dmitry N. Zarubin
- A. N. Nesmeyanov Institute of Organoelement Compounds, Russian Academy of Sciences, Vavilov str., 28, 119991 Moscow, Russia
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19
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Fey N, Koumi A, Malkov AV, Moseley JD, Nguyen BN, Tyler SNG, Willans CE. Mapping the properties of bidentate ligands with calculated descriptors (LKB-bid). Dalton Trans 2020; 49:8169-8178. [DOI: 10.1039/d0dt01694b] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Ligand space for bidentates has been mapped, computationally, varying donors, substituents and backbones, to give a new database, LKB-bid.
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Affiliation(s)
- Natalie Fey
- School of Chemistry
- University of Bristol
- Bristol BS8 1TS
- UK
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20
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Sha F, Shimizu EA, Slocumb HS, Towell SE, Zhen Y, Porter HZ, Takase MK, Johnson AR. Catalytic intramolecular hydroamination of aminoallenes using titanium and tantalum complexes of sterically encumbered chiral sulfonamides. Dalton Trans 2020; 49:12418-12431. [DOI: 10.1039/d0dt02557g] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
Abstract
Titanium and tantalum catalysts supported by readily prepared chiral sulfonamide ligands catalyze hydroamination of aminoallenes that lack N-protecting groups.
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Affiliation(s)
| | | | | | | | - Yi Zhen
- Harvey Mudd College
- Claremont
- USA
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21
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Titanium catalyzed synthesis of amines and N-heterocycles. ADVANCES IN ORGANOMETALLIC CHEMISTRY 2020. [DOI: 10.1016/bs.adomc.2020.04.003] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
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22
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Manßen M, Schafer LL. Titanium catalysis for the synthesis of fine chemicals – development and trends. Chem Soc Rev 2020; 49:6947-6994. [DOI: 10.1039/d0cs00229a] [Citation(s) in RCA: 64] [Impact Index Per Article: 16.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
Abstract
Atlas as a Titan(ium) is holding the earth-abundant chemistry world. Titanium is the second most abundant transition metal, is a key player in important industrial processes (e.g. polyethylene) and shows much promise for diverse applications in the future.
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Affiliation(s)
- Manfred Manßen
- The Department of Chemistry
- The University of British Columbia
- Vancouver
- Canada
| | - Laurel L. Schafer
- The Department of Chemistry
- The University of British Columbia
- Vancouver
- Canada
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23
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Aldrich KE, Kansal D, Odom AL. Catalyst design insights from modelling a titanium-catalyzed multicomponent reaction. Faraday Discuss 2019; 220:208-230. [PMID: 31528974 DOI: 10.1039/c9fd00033j] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
High oxidation state transition metal catalysis touches our daily lives through bulk chemical production, e.g. olefin polymerization, and through specialty chemical reactions common in organic synthesis, e.g. the Sharpless asymmetric epoxidation and olefin dihydroxylation. Our group has been expanding the reaction chemistry of titanium(iv) to produce a host of nitrogen-based heterocycles via multicomponent coupling reactions. One such multicomponent coupling reaction discovered in our laboratory is iminoamination, involving an amine, an alkyne, and an isonitrile. However, the experimental modeling of high oxidation state reactions lags far behind that of low oxidation state systems, where a great deal is known about ligands, their donor properties and how their structures affect catalysis. As a result, we have developed an experimental method for determining the donor abilities of anionic ligands on high oxidation state systems, which is based on the chromium(vi) nitride system NCr(NiPr2)2X, where X = the ligand being interrogated. The parameters obtained are simply called ligand donor parameters (LDP). In this contribution, a detailed optimization of the Ti(NMe2)2(dpm)-catalyzed iminoamination reaction was carried out, where dpm = 5,5-dimethyldipyrrolylmethane. During the course of these studies, dimeric {Ti(μ-N-tolyl)(dpm)}2 was isolated, which is proposed as the resting state of the catalyst. To destabilize this resting state, a more electron-rich bis(aryloxide) catalyst system was investigated. The more electron-rich system is somewhat more active for iminoamination under some conditions; however, the catalyst is prone to disproportionation. A study of heteroleptic titanium complexes revealed that the disproportionation equilibrium constant can be effectively modeled as a function of the square of the difference in LDP between the ligands, (ΔLDP)2. Using this methodology, one can estimate the stability of titanium complexes toward disproportionation.
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Affiliation(s)
- Kelly E Aldrich
- Department of Chemistry, Michigan State University, 578 S. Shaw Ln, East Lansing, MI 48824, USA.
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24
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Sampson J, Choi G, Akhtar MN, Jaseer E, Theravalappil R, Garcia N, Agapie T. Early Metal Di(pyridyl) Pyrrolide Complexes with Second Coordination Sphere Arene-π Interactions: Ligand Binding and Ethylene Polymerization. ACS OMEGA 2019; 4:15879-15892. [PMID: 31592458 PMCID: PMC6776977 DOI: 10.1021/acsomega.9b01788] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/19/2019] [Accepted: 08/27/2019] [Indexed: 05/04/2023]
Abstract
Early metal complexes supported by hemilabile, monoanionic di(pyridyl) pyrrolide ligands substituted with mesityl and anthracenyl groups were synthesized to probe the possibility of second coordination sphere arene-π interactions with ligands with potential for allosteric control in coordination chemistry, substrate activation, and olefin polymerization. Yttrium alkyl, indolide, and amide complexes were prepared and structurally characterized; close contacts between the anthracenyl substituents and Y-bound ligands are observed in the solid state. Titanium, zirconium, and hafnium tris(dimethylamido) complexes were synthesized, and their ethylene polymerization activity was tested. In the solid state structure of one of the Ti tris(dimethylamido) complexes, coordination of Ti to only one of the pyridine donors is observed pointing to the hemilabile character of the di(pyridyl) pyrrolide ligands.
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Affiliation(s)
- Jessica Sampson
- Division
of Chemistry and Chemical Engineering, California
Institute of Technology, 1200 E California Blvd., Pasadena, California 91125, United States
| | - Gyeongshin Choi
- Division
of Chemistry and Chemical Engineering, California
Institute of Technology, 1200 E California Blvd., Pasadena, California 91125, United States
| | - Muhammed Naseem Akhtar
- Center
for Refining and Petrochemicals, King Fahd
University of Petroleum and Minerals, Dhahran 31261, Saudi Arabia
| | - E.A. Jaseer
- Center
for Refining and Petrochemicals, King Fahd
University of Petroleum and Minerals, Dhahran 31261, Saudi Arabia
| | - Rajesh Theravalappil
- Center
for Refining and Petrochemicals, King Fahd
University of Petroleum and Minerals, Dhahran 31261, Saudi Arabia
| | - Nestor Garcia
- Center
for Refining and Petrochemicals, King Fahd
University of Petroleum and Minerals, Dhahran 31261, Saudi Arabia
| | - Theodor Agapie
- Division
of Chemistry and Chemical Engineering, California
Institute of Technology, 1200 E California Blvd., Pasadena, California 91125, United States
- E-mail:
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25
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Towards the online computer-aided design of catalytic pockets. Nat Chem 2019; 11:872-879. [DOI: 10.1038/s41557-019-0319-5] [Citation(s) in RCA: 436] [Impact Index Per Article: 87.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/23/2018] [Accepted: 07/25/2019] [Indexed: 12/18/2022]
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26
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Aldrich KE, Odom AL. A silica-supported titanium catalyst for heterogeneous hydroamination and multicomponent coupling reactions. Dalton Trans 2019; 48:11352-11360. [PMID: 31281914 DOI: 10.1039/c9dt01835b] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Abstract
Highly dehydrated silica gel, SiO2700, gave a material with a total surface hydroxyl density of 0.31 ± 0.05 mmol g-1, 0.9 ± 0.1 Si-OH sites per nm2. Treatment of this material with Ti(NMe2)4 gave Ti(NMe2)3/SiO2700, which is 1.50% ± 0.07 Ti, where the titanium is bound to the surface, on average, through a single O-Si-Ti linkage. This material was tested for its properties as a catalyst for C-N bond forming reactions and was found to be a competent alkyne hydroamination and iminoamination catalyst. For iminoamination, which is the 3-component coupling of an alkyne, primary amine, and isonitrile, this heterogeneous catalyst was able to carry out some catalyses faster than previously reported homogeneous catalysts with lower catalyst loadings. The material is also a catalyst for the addition of aniline to dicyclohexylcarbodiimide to form a substituted guanidine. In addition, a known quinoline with biological activity was prepared using the heterogeneous catalyst in a one-pot procedure using half the catalyst loading of the previously reported synthesis.
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Affiliation(s)
- Kelly E Aldrich
- Department of Chemistry, Michigan State University, 578 S Shaw Ln, East Lansing, MI, 48824 USA.
| | - Aaron L Odom
- Department of Chemistry, Michigan State University, 578 S Shaw Ln, East Lansing, MI, 48824 USA.
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27
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Hong J, Gent WE, Xiao P, Lim K, Seo DH, Wu J, Csernica PM, Takacs CJ, Nordlund D, Sun CJ, Stone KH, Passarello D, Yang W, Prendergast D, Ceder G, Toney MF, Chueh WC. Metal-oxygen decoordination stabilizes anion redox in Li-rich oxides. NATURE MATERIALS 2019; 18:256-265. [PMID: 30718861 DOI: 10.1038/s41563-018-0276-1] [Citation(s) in RCA: 125] [Impact Index Per Article: 25.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/16/2018] [Accepted: 12/17/2018] [Indexed: 05/20/2023]
Abstract
Reversible high-voltage redox chemistry is an essential component of many electrochemical technologies, from (electro)catalysts to lithium-ion batteries. Oxygen-anion redox has garnered intense interest for such applications, particularly lithium-ion batteries, as it offers substantial redox capacity at more than 4 V versus Li/Li+ in a variety of oxide materials. However, oxidation of oxygen is almost universally correlated with irreversible local structural transformations, voltage hysteresis and voltage fade, which currently preclude its widespread use. By comprehensively studying the Li2-xIr1-ySnyO3 model system, which exhibits tunable oxidation state and structural evolution with y upon cycling, we reveal that this structure-redox coupling arises from the local stabilization of short approximately 1.8 Å metal-oxygen π bonds and approximately 1.4 Å O-O dimers during oxygen redox, which occurs in Li2-xIr1-ySnyO3 through ligand-to-metal charge transfer. Crucially, formation of these oxidized oxygen species necessitates the decoordination of oxygen to a single covalent bonding partner through formation of vacancies at neighbouring cation sites, driving cation disorder. These insights establish a point-defect explanation for why anion redox often occurs alongside local structural disordering and voltage hysteresis during cycling. Our findings offer an explanation for the unique electrochemical properties of lithium-rich layered oxides, with implications generally for the design of materials employing oxygen redox chemistry.
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Affiliation(s)
- Jihyun Hong
- Department of Materials Science and Engineering, Stanford University, Stanford, CA, USA
- Stanford Synchrotron Radiation Lightsource, SLAC National Accelerator Laboratory, Menlo Park, CA, USA
- Stanford Institute for Materials & Energy Sciences, SLAC National Accelerator Laboratory, Menlo Park, CA, USA
- Applied Energy Division, SLAC National Accelerator Laboratory, Menlo Park, CA, USA
- Center for Energy Materials Research, Korea Institute of Science and Technology (KIST), Seoul, Republic of Korea
| | - William E Gent
- Department of Chemistry, Stanford University, Stanford, CA, USA
- The Advanced Light Source, Lawrence Berkeley National Laboratory, Berkeley, CA, USA
| | - Penghao Xiao
- Materials Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA
| | - Kipil Lim
- Department of Materials Science and Engineering, Stanford University, Stanford, CA, USA
- Stanford Synchrotron Radiation Lightsource, SLAC National Accelerator Laboratory, Menlo Park, CA, USA
- Stanford Institute for Materials & Energy Sciences, SLAC National Accelerator Laboratory, Menlo Park, CA, USA
- Applied Energy Division, SLAC National Accelerator Laboratory, Menlo Park, CA, USA
| | - Dong-Hwa Seo
- Department of Materials Science and Engineering, University of California, Berkeley, CA, USA
| | - Jinpeng Wu
- Stanford Institute for Materials & Energy Sciences, SLAC National Accelerator Laboratory, Menlo Park, CA, USA
- The Advanced Light Source, Lawrence Berkeley National Laboratory, Berkeley, CA, USA
| | - Peter M Csernica
- Department of Materials Science and Engineering, Stanford University, Stanford, CA, USA
| | - Christopher J Takacs
- Stanford Synchrotron Radiation Lightsource, SLAC National Accelerator Laboratory, Menlo Park, CA, USA
| | - Dennis Nordlund
- Stanford Synchrotron Radiation Lightsource, SLAC National Accelerator Laboratory, Menlo Park, CA, USA
| | - Cheng-Jun Sun
- The Advanced Photon Source, Argonne National Laboratory, Lemont, IL, USA
| | - Kevin H Stone
- Stanford Synchrotron Radiation Lightsource, SLAC National Accelerator Laboratory, Menlo Park, CA, USA
| | - Donata Passarello
- Stanford Synchrotron Radiation Lightsource, SLAC National Accelerator Laboratory, Menlo Park, CA, USA
| | - Wanli Yang
- The Advanced Light Source, Lawrence Berkeley National Laboratory, Berkeley, CA, USA
| | - David Prendergast
- The Molecular Foundry, Lawrence Berkeley National Laboratory, Berkeley, CA, USA
| | - Gerbrand Ceder
- Materials Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.
- Department of Materials Science and Engineering, University of California, Berkeley, CA, USA.
| | - Michael F Toney
- Stanford Synchrotron Radiation Lightsource, SLAC National Accelerator Laboratory, Menlo Park, CA, USA.
- Applied Energy Division, SLAC National Accelerator Laboratory, Menlo Park, CA, USA.
| | - William C Chueh
- Department of Materials Science and Engineering, Stanford University, Stanford, CA, USA.
- Stanford Institute for Materials & Energy Sciences, SLAC National Accelerator Laboratory, Menlo Park, CA, USA.
- Applied Energy Division, SLAC National Accelerator Laboratory, Menlo Park, CA, USA.
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Abstract
Ligands, especially phosphines and carbenes, can play a key role in modifying and controlling homogeneous organometallic catalysts, and they often provide a convenient approach to fine-tuning the performance of known catalysts. The measurable outcomes of such catalyst modifications (yields, rates, selectivity) can be set into context by establishing their relationship to steric and electronic descriptors of ligand properties, and such models can guide the discovery, optimization, and design of catalysts. In this review we present a survey of calculated ligand descriptors, with a particular focus on homogeneous organometallic catalysis. A range of different approaches to calculating steric and electronic parameters are set out and compared, and we have collected descriptors for a range of representative ligand sets, including 30 monodentate phosphorus(III) donor ligands, 23 bidentate P,P-donor ligands, and 30 carbenes, with a view to providing a useful resource for analysis to practitioners. In addition, several case studies of applications of such descriptors, covering both maps and models, have been reviewed, illustrating how descriptor-led studies of catalysis can inform experiments and highlighting good practice for model comparison and evaluation.
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Affiliation(s)
- Derek J Durand
- School of Chemistry , University of Bristol , Cantock's Close , Bristol BS8 1TS , U.K
| | - Natalie Fey
- School of Chemistry , University of Bristol , Cantock's Close , Bristol BS8 1TS , U.K
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29
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Aldrich KE, Billow BS, Staples RJ, Odom AL. Phosphine interactions with high oxidation state metals. Polyhedron 2019. [DOI: 10.1016/j.poly.2018.11.027] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/22/2023]
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30
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Marrazzini G, Gabbiani C, Ciancaleoni G. Interplay between Gold(I)-Ligand Bond Components and Hydrogen Bonding: A Combined Experimental/Computational Study. ACS OMEGA 2019; 4:1344-1353. [PMID: 31459403 PMCID: PMC6647975 DOI: 10.1021/acsomega.8b03330] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/29/2018] [Accepted: 01/03/2019] [Indexed: 06/10/2023]
Abstract
The influence of weak interactions on the donation/back-donation bond components in the complex [(NHC)Au(SeU)]+ (NHC = N-heterocyclic carbene; SeU = selenourea) has been studied by coupling experimental and theoretical techniques. In particular, NMR 1H and pulsed-field gradient spin-echo titrations allowed us to characterize the hydrogen bond (HB) between the -NH2 moieties of SeU and the anions PF6 - and ClO4 -, whereas 77Se NMR spectroscopy allowed us to characterize the Au-Se bond. Theoretically, the Au-Se and Au-C orbital interactions have been decomposed using the natural orbital for the chemical valence framework and the bond components quantified through the charge displacement analysis. This methodology provides the quantification of the Dewar-Chatt-Duncanson (DCD) components for the Au-C and Au-Se bonds in the absence and presence of the second-sphere HB. The results presented here show that the anion has a dual mode action: it modifies the conformation of the cation by ion pairing (and this already influences the DCD components) and it induces new polarization effects that depend on the relative anion/cation relative orientation. The perchlorate polarizes SeU, enhancing the Se → Au σ donation and the Au → C back-donation and depressing the C → Au σ donation. On the contrary, the hexafluorophosphate depresses both the Se → Au and C → Au σ donations.
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31
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Chiu HC, See XY, Tonks IA. Dative Directing Group Effects in Ti-Catalyzed [2+2+1] Pyrrole Synthesis: Chemo- and Regioselective Alkyne Heterocoupling. ACS Catal 2019; 9:216-223. [PMID: 31768294 DOI: 10.1021/acscatal.8b04669] [Citation(s) in RCA: 39] [Impact Index Per Article: 7.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
Abstract
Transient dative substrate-Ti interactions have been found to play a key role in controlling the regioselectivity of alkyne insertion and [2+2] cycloaddition in Ti-catalyzed [2+2+1] pyrrole synthesis and Ti-catalyzed alkyne hydroamination. TMS-protected alkynes with pendent Lewis basic groups can invert the regioselectivity of TMS-protected alkyne insertion, leading to the selective formation of highly substituted 3-TMS pyrroles. The competency of various potential directing groups was investigated, and it was found that the directing-group effect can be tuned by modifying the catalyst Lewis acidity, the directing-group basicity, or the directing-group tether length. Dative directing-group effects are unexplored with Ti catalysts, and this study demonstrates the potential power of dative substrate-Ti interactions in tuning selectivity.
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Affiliation(s)
- Hsin-Chun Chiu
- Department of Chemistry, University of Minnesota−Twin Cities, 207 Pleasant Street SE, Minneapolis, Minnesota 55455, United States
| | - Xin Yi See
- Department of Chemistry, University of Minnesota−Twin Cities, 207 Pleasant Street SE, Minneapolis, Minnesota 55455, United States
| | - Ian A. Tonks
- Department of Chemistry, University of Minnesota−Twin Cities, 207 Pleasant Street SE, Minneapolis, Minnesota 55455, United States
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32
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Lai A, Clifton J, Diaconescu PL, Fey N. Computational mapping of redox-switchable metal complexes based on ferrocene derivatives. Chem Commun (Camb) 2019; 55:7021-7024. [DOI: 10.1039/c9cc01977d] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The properties of redox-switchable metal complexes have been captured with DFT-calculated parameters and processed into a map of chemical space, highlighting the effects of varying metals, donors, linkers and substituents in both accessible ferrocene oxidation states.
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Affiliation(s)
- Amy Lai
- Department of Chemistry and Biochemistry
- University of California
- Los Angeles
- USA
| | | | - Paula L. Diaconescu
- Department of Chemistry and Biochemistry
- University of California
- Los Angeles
- USA
| | - Natalie Fey
- School of Chemistry
- University of Bristol
- Bristol
- UK
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Gilmour DJ, Lauzon JMP, Clot E, Schafer LL. Ta-Catalyzed Hydroaminoalkylation of Alkenes: Insights into Ligand-Modified Reactivity Using DFT. Organometallics 2018. [DOI: 10.1021/acs.organomet.8b00674] [Citation(s) in RCA: 20] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/08/2023]
Affiliation(s)
- Damon J. Gilmour
- Department of Chemistry, University of British Columbia, 2036 Main Mall, Vancouver, British Columbia V6T 1Z1, Canada
| | - Jean Michel P. Lauzon
- Department of Chemistry, University of British Columbia, 2036 Main Mall, Vancouver, British Columbia V6T 1Z1, Canada
| | - Eric Clot
- Institut Charles Gerhardt, UMR 5253 CNRS-UM-ENSCM, Université de Montpellier, Place Eugène Bataillon, 34090 Montpellier, France
| | - Laurel L. Schafer
- Department of Chemistry, University of British Columbia, 2036 Main Mall, Vancouver, British Columbia V6T 1Z1, Canada
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34
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McPherson JN, Das B, Colbran SB. Tridentate pyridine–pyrrolide chelate ligands: An under-appreciated ligand set with an immensely promising coordination chemistry. Coord Chem Rev 2018. [DOI: 10.1016/j.ccr.2018.01.012] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/17/2022]
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McPherson JN, Elton TE, Colbran SB. A Strain-Deformation Nexus within Pincer Ligands: Application to the Spin States of Iron(II) Complexes. Inorg Chem 2018; 57:12312-12322. [DOI: 10.1021/acs.inorgchem.8b02038] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
Affiliation(s)
- James N. McPherson
- School of Chemistry, University of New South Wales, Sydney, New South Wales 2052, Australia
| | - Timothy E. Elton
- School of Chemistry, University of New South Wales, Sydney, New South Wales 2052, Australia
| | - Stephen B. Colbran
- School of Chemistry, University of New South Wales, Sydney, New South Wales 2052, Australia
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36
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Aldrich KE, Odom AL. Titanium-Catalyzed Hydroamination and Multicomponent Coupling with a Simple Silica-Supported Catalyst. Organometallics 2018. [DOI: 10.1021/acs.organomet.8b00313] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Affiliation(s)
- Kelly E. Aldrich
- Department of Chemistry, Michigan State University, 578 South Shaw Lane, East Lansing, Michigan 48823, United States
| | - Aaron L. Odom
- Department of Chemistry, Michigan State University, 578 South Shaw Lane, East Lansing, Michigan 48823, United States
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37
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Zhang W, Waddell PM, Tiedemann MA, Padilla CE, Mei J, Chen L, Carrow BP. Electron-Rich Metal Cations Enable Synthesis of High Molecular Weight, Linear Functional Polyethylenes. J Am Chem Soc 2018; 140:8841-8850. [PMID: 29944349 DOI: 10.1021/jacs.8b04712] [Citation(s) in RCA: 88] [Impact Index Per Article: 14.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
Abstract
Group 10 metal catalysts have shown much promise for the copolymerization of nonpolar with polar alkenes to directly generate functional materials, but access to high copolymer molecular weights nevertheless remains a key challenge toward practical applications in this field. In the context of identifying new strategies for molecular weight control, we report a series of highly polarized P(V)-P(III) chelating ligands that manifest unique space filling and electrostatic effects within the coordination sphere of single component Pd polymerization catalysts and exert important influences on (co)polymer molecular weights. Single component, cationic phosphonic diamide-phosphine (PDAP) Pd catalysts are competent to generate linear, functional polyethylenes with Mw up to ca. 2 × 105 g mol-1, significantly higher than prototypical catalysts in this field, and with polar content up to ca. 9 mol %. Functional groups are positioned by these catalysts almost exclusively along the main chain, not at chain ends or ends of branches, which mimics the microstructures of commercial linear low-density polyethylenes. Spectroscopic, X-ray crystallographic, and computational data indicate PDAP coordination to Pd manifests cationic yet electron-rich active species, which may correlate to their complementary catalytic properties versus privileged catalysts such as electrophilic α-diimine (Brookhart-type) or neutral phosphine-sulfonato (Drent-type) complexes. Though steric blocking within the catalyst coordination sphere has long been a reliable strategy for catalyst molecular weight control, data from this study suggest electronic control should be considered as a complementary concept less prone to suppression of comonomer enchainment that can occur with highly sterically congested catalysts.
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Affiliation(s)
- Wei Zhang
- Department of Chemistry , Princeton University , Princeton , New Jersey 08544 , United States
| | - Peter M Waddell
- Department of Chemistry , Princeton University , Princeton , New Jersey 08544 , United States
| | - Margaret A Tiedemann
- Department of Chemistry , Princeton University , Princeton , New Jersey 08544 , United States
| | - Christian E Padilla
- Department of Chemistry , Princeton University , Princeton , New Jersey 08544 , United States
| | - Jiajun Mei
- Department of Chemistry , Princeton University , Princeton , New Jersey 08544 , United States
| | - Liye Chen
- Department of Chemistry , Princeton University , Princeton , New Jersey 08544 , United States
| | - Brad P Carrow
- Department of Chemistry , Princeton University , Princeton , New Jersey 08544 , United States
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38
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Davis-Gilbert ZW, Wen X, Goodpaster JD, Tonks IA. Mechanism of Ti-Catalyzed Oxidative Nitrene Transfer in [2 + 2 + 1] Pyrrole Synthesis from Alkynes and Azobenzene. J Am Chem Soc 2018; 140:7267-7281. [PMID: 29763560 PMCID: PMC6508086 DOI: 10.1021/jacs.8b03546] [Citation(s) in RCA: 66] [Impact Index Per Article: 11.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
Abstract
A combined computational and experimental study on the mechanism of Ti-catalyzed formal [2 + 2 + 1] pyrrole synthesis from alkynes and aryl diazenes is reported. This reaction proceeds through a formally TiII/TiIV redox catalytic cycle as determined by natural bond orbital (NBO) and intrinsic bond orbital (IBO) analysis. Kinetic analysis of the reaction of internal alkynes with azobenzene reveals a complex equilibrium involving Ti═NPh monomer/dimer equilibrium and Ti═NPh + alkyne [2 + 2] cycloaddition equilibrium along with azobenzene and pyridine inhibition equilibria prior to rate-determining second alkyne insertion. Computations support this kinetic analysis, provide insights into the structure of the active species in catalysis and the roles of solvent, and provide a new mechanism for regeneration of the Ti imido catalyst via disproportionation. Reductive elimination from a 6-membered azatitanacyclohexadiene species to generate pyrrole-bound TiII is surprisingly facile and occurs through a unique electrocyclic reductive elimination pathway similar to a Nazarov cyclization. The resulting TiII species are stabilized through backbonding into the π* of the pyrrole framework, although solvent effects also significantly stabilize free TiII species that are required for pyrrole loss and catalytic turnover. Further computational and kinetic analysis reveals that in complex reactions with unysmmetric alkynes the resulting pyrrole regioselectivity is driven primarily by steric effects for terminal alkynes and inductive effects for internal alkynes.
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Affiliation(s)
| | | | - Jason D. Goodpaster
- Department of Chemistry, University of Minnesota – Twin Cities, Minneapolis, Minnesota 55455, United States
| | - Ian A. Tonks
- Department of Chemistry, University of Minnesota – Twin Cities, Minneapolis, Minnesota 55455, United States
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Ruccolo S, Rauch M, Parkin G. Synthesis and Structural Characterization of Tris(isopropylbenzimidazol-2-ylthio)methyl Zinc Complexes, [TitmPriBenz]ZnX: Modulation of Transannular Zn–C Interactions. Organometallics 2018. [DOI: 10.1021/acs.organomet.8b00158] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/13/2023]
Affiliation(s)
- Serge Ruccolo
- Department of Chemistry, Columbia University, New York, New York 10027, United States
| | - Michael Rauch
- Department of Chemistry, Columbia University, New York, New York 10027, United States
| | - Gerard Parkin
- Department of Chemistry, Columbia University, New York, New York 10027, United States
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40
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Davis-Gilbert ZW, Tonks IA. Titanium redox catalysis: insights and applications of an earth-abundant base metal. Dalton Trans 2018; 46:11522-11528. [PMID: 28795719 DOI: 10.1039/c7dt02319g] [Citation(s) in RCA: 35] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Abstract
π-Acid ancillary ligands, reactants, or products can stabilize reactive low valent Ti intermediates through backbonding, and present opportunities for the development of vast new classes of Ti-catalyzed redox reactions with practical applications.
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41
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Al-Harbi A, Kriegel B, Gulati S, Hammond MJ, Parkin G. Bis- and Tris(2-oxobenzimidazolyl)hydroborato Complexes of Sodium and Thallium: New Classes of Bidentate and Tridentate Oxygen Donor Ligands. Inorg Chem 2017; 56:15271-15284. [PMID: 29210574 DOI: 10.1021/acs.inorgchem.7b02638] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
A series of bis- and tris(oxobenzimidazolyl)hydroborato compounds, namely, [BoRBenz]Na and [ToRBenz]-Na (R = Me, But, Ad), which feature uncommon sterically demanding LX [O2] and L2X [O3] donor ligands, have been obtained via the reactions of NaBH4 with 1-R-1,3-dihydro-2H-benzimidazol-2-ones. Evidence that the alkyl substituents are suitably located to have a significant impact on the coordination environment is provided by the observation that the methyl derivative [ToMeBenz]Na(κ3-diglyme) exhibits κ3-coordination of the diglyme, whereas the t-butyl and adamantyl derivatives, [ToButBenz]Na(κ2-diglyme) and [ToAdBenz]Na(κ2-diglyme), exhibit κ2-coordination. The [BoRBenz] and [ToRBenz] ligands also allow for isolation of discrete mononuclear thallium compounds, [BoRBenz]Tl and [ToRBenz]Tl, for which the steric demands of the ligands have been quantified in terms of both cone angle and buried volume concepts.
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Affiliation(s)
- Ahmed Al-Harbi
- Department of Chemistry, Columbia University , New York, New York 10027, United States
| | - Benjamin Kriegel
- Department of Chemistry, Columbia University , New York, New York 10027, United States
| | - Shivani Gulati
- Department of Chemistry, Columbia University , New York, New York 10027, United States
| | - Matthew J Hammond
- Department of Chemistry, Columbia University , New York, New York 10027, United States
| | - Gerard Parkin
- Department of Chemistry, Columbia University , New York, New York 10027, United States
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42
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Neary MC, Quinlivan PJ, Parkin G. Zerovalent Nickel Compounds Supported by 1,2-Bis(diphenylphosphino)benzene: Synthesis, Structures, and Catalytic Properties. Inorg Chem 2017; 57:374-391. [DOI: 10.1021/acs.inorgchem.7b02636] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
Affiliation(s)
- Michelle C. Neary
- Department of Chemistry, Columbia University, New York, New York 10027, United States
| | - Patrick J. Quinlivan
- Department of Chemistry, Columbia University, New York, New York 10027, United States
| | - Gerard Parkin
- Department of Chemistry, Columbia University, New York, New York 10027, United States
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43
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Vásquez-Céspedes S, Wang X, Glorius F. Plausible Rh(V) Intermediates in Catalytic C–H Activation Reactions. ACS Catal 2017. [DOI: 10.1021/acscatal.7b03048] [Citation(s) in RCA: 114] [Impact Index Per Article: 16.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/23/2023]
Affiliation(s)
- Suhelen Vásquez-Céspedes
- Organisch-Chemisches Institut, Westfälische Wilhelms-Universität Münster, Corrensstrasse 40, 48149 Münster, Germany
| | - Xiaoming Wang
- Organisch-Chemisches Institut, Westfälische Wilhelms-Universität Münster, Corrensstrasse 40, 48149 Münster, Germany
| | - Frank Glorius
- Organisch-Chemisches Institut, Westfälische Wilhelms-Universität Münster, Corrensstrasse 40, 48149 Münster, Germany
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Affiliation(s)
- Ian A Tonks
- Department of Chemistry, University of Minnesota, Twin Cities, 207 Pleasant Street SE, Minneapolis, Minnesota 55455, USA
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