Ultraviolet optical horn antennas for label-free detection of single proteins

a-SiC heteromorphic immersion nanocavities enabling wide-field real-time single-molecule detection

Real-time single-molecule detection via fluorescence exhibits advantages of non-contact and specificity, especially in illustrating the dynamic heterogeneity of living substances. However, wide-field view and signal-to-noise ratio (SNR) are always contradictory in real-time single-molecule detection with fluorescence labels, owing to the limitation of the omnidirectional radiation characteristics of fluorophores. Herein, we propose a nano optical sensing device based on a-SiC heteromorphic immersion nanocavities (aHINCs), enabling wide-field real-time single-molecule imaging without sacrificing SNR. The characteristics of architectural aHINCs for far-field imaging are investigated, and the designed sensing device help adjust the emission direction of fluorescence in gold hot spots of nanocavities, allowing the fluorescence divergence angle to be adjusted to ±10°. The experimental results show the SNR reached 22, markedly strengthening the fluorescence collection efficiency. The simultaneous observation of nanocavity sites, within the same field of view of the chip, is 488 times the number of sites observed with classic detection method. Furthermore, the wide-field real-time detection of the single molecule-specific binding process of the oligo DNA complementary chain is successfully realized. The nano optical sensing device based on the aHINC shows potential for parallel real-time single-molecule detection applications.

The Origin of Single-Molecule Sensitivity in Label-Free Solution-Phase Optical Microcavity Detection

Fiber Fabry-Perot microcavities (FFPCs) enhance light-matter interactions by localizing light in time and space. Such FFPCs are at the heart of this powerful detection scheme exploiting photothermal nonlinearities and Pound-Drever-Hall frequency locking that enabled label-free profiling of single solution-phase biomolecules with unprecedented sensitivity. Here, we deploy a combination of experiment and simulation to provide a quantitative mechanism for the observed single-molecule sensitivity and achieve quantitative agreement with experiment. A key element of the mechanism is maintaining the FFPC in an unstable regime and allowing it to rapidly shift between hot and cold photothermal equilibria upon perturbation. We show how Brownian molecular trajectories, introducing resonance fluctuations less than 1000th of the already narrow microcavity line width, can produce selective and highly amplified responses. Such perturbations are found to exist in a specific and tunable frequency window termed the molecular velocity filter window. The model's predictive capacity suggests it will be an important tool to identify additional modes of sensitivity to single-molecule hydrodynamic behavior.

Angle-controlled strong and weak coupling in photon molecules

Strong light-matter coupling occurs when the rate of energy exchange between the electromagnetic mode and the molecular ensemble exceeds the competitive dissipation process. Coupled photon molecules with near-field light-matter interactions may produce new hybridized states when they reach the strong coupling region. Tunable Terahertz (THz) meta materials can be used to design sensors, optical modulators, etc., to improve imaging sensitivity and resolution. In this work, we use the scattering-type scanning near-field microscopy (s-SNOM) to demonstrate an angle-controlled coupling strength in a tunable photon molecules system. The system consists of a base waveguide layer and a single ribbon structure. By changing the in-plane angle between ribbon and incidence, the coupling strength between ribbon resonance and waveguide mode ranges from 0.03 to 0.08 THz, leading to the system's transformation from weak to strong coupling. This work offers a new platform for actively controlling strong light-matter interaction and further applications in strong coupling.

Dual-wavelength metalens enables Epi-fluorescence detection from single molecules

Single molecule fluorescence spectroscopy is at the heart of molecular biophysics research and the most sensitive biosensing assays. The growing demand for precision medicine and environmental monitoring requires the creation of miniaturized and portable sensing platforms. However, the need for highly sophisticated objective lenses has precluded the development of single molecule detection systems for truly portable devices. Here, we propose a dielectric metalens device of submicrometer thickness to excite and collect light from fluorescent molecules instead of an objective lens. The high numerical aperture, high focusing efficiency, and dual-wavelength operation of the metalens enable the implementation of fluorescence correlation spectroscopy with a single Alexa 647 molecule in the focal volume. Moreover, the metalens enables real-time monitoring of individual fluorescent nanoparticle transitions and identification of hydrodynamic diameters ranging from a few to hundreds of nanometers. This advancement in sensitivity extends the application of the metalens technology to ultracompact single-molecule sensors.

Ultraviolet Resonant Nanogap Antennas with Rhodium Nanocube Dimers for Enhancing Protein Intrinsic Autofluorescence

Plasmonic optical nanoantennas offer compelling solutions for enhancing light-matter interactions at the nanoscale. However, until now, their focus has been mainly limited to the visible and near-infrared regions, overlooking the immense potential of the ultraviolet (UV) range, where molecules exhibit their strongest absorption. Here, we present the realization of UV resonant nanogap antennas constructed from paired rhodium nanocubes. Rhodium emerges as a robust alternative to aluminum, offering enhanced stability in wet environments and ensuring reliable performance in the UV range. Our results showcase the nanoantenna's ability to enhance the UV autofluorescence of label-free streptavidin and hemoglobin proteins. We achieve significant enhancements of the autofluorescence brightness per protein by up to 120-fold and reach zeptoliter detection volumes, enabling UV autofluorescence correlation spectroscopy (UV-FCS) at high concentrations of several tens of micromolar. We investigate the modulation of fluorescence photokinetic rates and report excellent agreement between the experimental results and numerical simulations. This work expands the applicability of plasmonic nanoantennas to the deep UV range, unlocking the investigation of label-free proteins at physiological concentrations.

Revealing the Binding Events of Single Proteins on Exosomes Using Nanocavity Antennas beyond Zero-Mode Waveguides

Exosomes (EXOs) play a crucial role in biological action mechanisms. Understanding the biological process of single-molecule interactions on the surface of the EXO membrane is essential for elucidating the precise function of the EXO receptor. However, due to dimensional incompatibility, monitoring the binding events between EXOs of tens to hundreds of nanometers and biomolecules of nanometers using existing nanostructure antennas is difficult. Unlike the typical zero-mode waveguides (ZMWs), this work presents a nanocavity antenna (λvNAs) formed by nanocavities with diameters close to the visible light wavelength dimensions. Effective excitation volumes suitable for observing single-molecule fluorescence were generated in nanocavities of larger diameters than typical ZMWs; the optimal signal-to-noise ratio obtained was 19.5 when the diameter was 300 nm and the incident angle was ∼50°. EXOs with a size of 50-150 nm were loaded into λvNAs with an optimized diameter of 300-500 nm, resulting in appreciable occupancy rates that overcame the nanocavity size limitation for large-volume biomaterial loading. Additionally, this method identified the binding events between the single transmembrane CD9 proteins on the EXO surface and their monoclonal antibody anti-CD9, demonstrating that λvNAs expanded the application range beyond subwavelength ZMWs. Furthermore, the λvNAs provide a platform for obtaining in-depth knowledge of the interactions of single molecules with biomaterials ranging in size from tens to hundreds of nanometers.

Dual-wavelength UV-visible metalens for multispectral photoacoustic microscopy: A simulation study

Photoacoustic microscopy is advancing with research on utilizing ultraviolet and visible light. Dual-wavelength approaches are sought for observing DNA/RNA- and vascular-related disorders. However, the availability of high numerical aperture lenses covering both ultraviolet and visible wavelengths is severely limited due to challenges such as chromatic aberration in the optics. Herein, we present a groundbreaking proposal as a pioneering simulation study for incorporating multilayer metalenses into ultraviolet-visible photoacoustic microscopy. The proposed metalens has a thickness of 1.4 µm and high numerical aperture of 0.8. By arranging cylindrical hafnium oxide nanopillars, we design an achromatic transmissive lens for 266 and 532 nm wavelengths. The metalens achieves a diffraction-limited focal spot, surpassing commercially available objective lenses. Through three-dimensional photoacoustic simulation, we demonstrate high-resolution imaging with superior endogenous contrast of targets with ultraviolet and visible optical absorption bands. This metalens will open new possibilities for downsized multispectral photoacoustic microscopy in clinical and preclinical applications.

Hyperlens for capturing sub-diffraction nanoscale single molecule dynamics

Hyperlenses offer an appealing opportunity to unlock bioimaging beyond the diffraction limit with conventional optics. Mapping hidden nanoscale spatiotemporal heterogeneities of lipid interactions in live cell membrane structures has been accessible only using optical super-resolution techniques. Here, we employ a spherical gold/silicon multilayered hyperlens that enables sub-diffraction fluorescence correlation spectroscopy at 635 nm excitation wavelength. The proposed hyperlens enables nanoscale focusing of a Gaussian diffraction-limited beam below 40 nm. Despite the pronounced propagation losses, we quantify energy localization in the hyperlens inner surface to determine fluorescence correlation spectroscopy (FCS) feasibility depending on hyperlens resolution and sub-diffraction field of view. We simulate the diffusion FCS correlation function and demonstrate the reduction of diffusion time of fluorescent molecules up to nearly 2 orders of magnitude as compared to free space excitation. We show that the hyperlens can effectively distinguish nanoscale transient trapping sites in simulated 2D lipid diffusion in cell membranes. Altogether, versatile and fabricable hyperlens platforms display pertinent applicability for the enhanced spatiotemporal resolution to reveal nanoscale biological dynamics of single molecules.

Recent advances in quantum nanophotonics: plexcitonic and vibro-polaritonic strong coupling and its biomedical and chemical applications

The fundamental understanding of molecular quantum electrodynamics via the strong light-matter interactions between a nanophotonic cavity and quantum emitters opens various applications in quantum biology, biophysics, and chemistry. However, considerable obstacles to obtaining a clear understanding of coupling mechanisms via reliable experimental quantifications remain to be resolved before this field can truly blossom toward practical applications in quantitative life science and photochemistry. Here, we provide recent advancements of state-of-the-art demonstrations in plexcitonic and vibro-polaritonic strong couplings and their applications. We highlight recent studies on various strong coupling systems for altering chemical reaction landscapes. Then, we discuss reports dedicated to the utilization of strong coupling methods for biomolecular sensing, protein functioning studies, and the generation of hybrid light-matter states inside living cells. The strong coupling regime provides a tool for investigating and altering coherent quantum processes in natural biological processes. We also provide an overview of new findings and future avenues of quantum biology and biochemistry.

Ultraviolet Nanophotonics Enables Autofluorescence Correlation Spectroscopy on Label-Free Proteins with a Single Tryptophan

Using the ultraviolet autofluorescence of tryptophan amino acids offers fascinating perspectives to study single proteins without the drawbacks of fluorescence labeling. However, the low autofluorescence signals have so far limited the UV detection to large proteins containing several tens of tryptophan residues. This limit is not compatible with the vast majority of proteins which contain only a few tryptophans. Here we push the sensitivity of label-free ultraviolet fluorescence correlation spectroscopy (UV-FCS) down to the single tryptophan level. Our results show how the combination of nanophotonic plasmonic antennas, antioxidants, and background reduction techniques can improve the signal-to-background ratio by over an order of magnitude and enable UV-FCS on thermonuclease proteins with a single tryptophan residue. This sensitivity breakthrough unlocks the applicability of UV-FCS technique to a broad library of label-free proteins.

Research on a Fiber Optic Oxygen Sensor Based on All-Phase Fast Fourier Transform (apFFT) Phase Detection

Fiber optic oxygen sensors based on fluorescence quenching play an important role in oxygen sensors. They have several advantages over other methods of oxygen sensing-they do not consume oxygen, have a short response time and are of high sensitivity. They are often used in special environments, such as hazardous environments and in vivo. In this paper, a new fiber optic oxygen sensor is introduced, which uses the all-phase fast Fourier transform (apFFT) algorithm, instead of the previous lock-in amplifier, for the phase detection of excitation light and fluorescence. The excitation and fluorescence frequency was 4 KHz, which was conducted between the oxygen-sensitive membrane and the photoelectric conversion module by the optical fiber and specially-designed optical path. The phase difference of the corresponding oxygen concentration was obtained by processing the corresponding electric signals of the excitation light and the fluorescence. At 0%, 5%, 15%, 21% and 50% oxygen concentrations, the experimental results showed that the apFFT had good linearity, precision and resolution-0.999°, 0.05° and 0.0001°, respectively-and the fiber optic oxygen sensor with apFFT had high stability. When the oxygen concentrations were 0%, 5%, 15%, 21% and 50%, the detection errors of the fiber optic oxygen sensor were 0.0447%, 0.1271%, 0.3801%, 1.3426% and 12.6316%, respectively. Therefore, the sensor that we designed has greater accuracy when measuring low oxygen concentrations, compared with high oxygen concentrations.