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Mc Cartney AM, Formenti G, Mouton A, De Panis D, Marins LS, Leitão HG, Diedericks G, Kirangwa J, Morselli M, Salces-Ortiz J, Escudero N, Iannucci A, Natali C, Svardal H, Fernández R, De Pooter T, Joris G, Strazisar M, Wood JMD, Herron KE, Seehausen O, Watts PC, Shaw F, Davey RP, Minotto A, Fernández JM, Böhne A, Alegria C, Alioto T, Alves PC, Amorim IR, Aury JM, Backstrom N, Baldrian P, Baltrunaite L, Barta E, BedHom B, Belser C, Bergsten J, Bertrand L, Bilandija H, Binzer-Panchal M, Bista I, Blaxter M, Borges PAV, Dias GB, Bosse M, Brown T, Bruggmann R, Buena-Atienza E, Burgin J, Buzan E, Cariani A, Casadei N, Chiara M, Chozas S, Čiampor F, Crottini A, Cruaud C, Cruz F, Dalen L, De Biase A, Del Campo J, Delic T, Dennis AB, Derks MFL, Diroma MA, Djan M, Duprat S, Eleftheriadi K, Feulner PGD, Flot JF, Forni G, Fosso B, Fournier P, Fournier-Chambrillon C, Gabaldon T, Garg S, Gissi C, Giupponi L, Gomez-Garrido J, González J, Grilo ML, Grüning B, Guerin T, Guiglielmoni N, Gut M, Haesler MP, Hahn C, Halpern B, Harrison PW, Heintz J, Hindrikson M, Höglund J, Howe K, Hughes GM, Istace B, Cock MJ, Janžekovič F, Jonsson ZO, Joye-Dind S, Koskimäki JJ, Krystufek B, Kubacka J, Kuhl H, Kusza S, Labadie K, Lähteenaro M, Lantz H, Lavrinienko A, Leclère L, Lopes RJ, Madsen O, Magdelenat G, Magoga G, Manousaki T, Mappes T, Marques JP, Redondo GIM, Maumus F, McCarthy SA, Megens HJ, Melo-Ferreira J, Mendes SL, Montagna M, Moreno J, Mosbech MB, Moura M, Musilova Z, Myers E, Nash WJ, Nater A, Nicholson P, Niell M, Nijland R, Noel B, Noren K, Oliveira PH, Olsen RA, Ometto L, Oomen RA, Ossowski S, Palinauskas V, Palsson S, Panibe JP, Pauperio J, Pavlek M, Payen E, Pawlowska J, Pellicer J, Pesole G, Pimenta J, Pippel M, Pirttilä AM, Poulakakis N, Rajan J, M C Rego R, Resendes R, Resl P, Riesgo A, Rodin-Morch P, Soares AER, Fernandes CR, Romeiras MM, Roxo G, Rüber L, Ruiz-Lopez MJ, Saarma U, da Silva LP, Sim-Sim M, Soler L, Sousa VC, Santos CS, Spada A, Stefanovic M, Steger V, Stiller J, Stöck M, Struck TH, Sudasinghe H, Tapanainen R, Tellgren-Roth C, Trindade H, Tukalenko Y, Urso I, Vacherie B, Van Belleghem SM, Van Oers K, Vargas-Chavez C, Velickovic N, Vella N, Vella A, Vernesi C, Vicente S, Villa S, Pettersson OV, Volckaert FAM, Voros J, Wincker P, Winkler S, Ciofi C, Waterhouse RM, Mazzoni CJ. The European Reference Genome Atlas: piloting a decentralised approach to equitable biodiversity genomics. NPJ BIODIVERSITY 2024; 3:28. [PMID: 39289538 PMCID: PMC11408602 DOI: 10.1038/s44185-024-00054-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/04/2024] [Accepted: 07/19/2024] [Indexed: 09/19/2024]
Abstract
A genomic database of all Earth's eukaryotic species could contribute to many scientific discoveries; however, only a tiny fraction of species have genomic information available. In 2018, scientists across the world united under the Earth BioGenome Project (EBP), aiming to produce a database of high-quality reference genomes containing all ~1.5 million recognized eukaryotic species. As the European node of the EBP, the European Reference Genome Atlas (ERGA) sought to implement a new decentralised, equitable and inclusive model for producing reference genomes. For this, ERGA launched a Pilot Project establishing the first distributed reference genome production infrastructure and testing it on 98 eukaryotic species from 33 European countries. Here we outline the infrastructure and explore its effectiveness for scaling high-quality reference genome production, whilst considering equity and inclusion. The outcomes and lessons learned provide a solid foundation for ERGA while offering key learnings to other transnational, national genomic resource projects and the EBP.
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Affiliation(s)
- Ann M Mc Cartney
- Genomics Institute, University of California, Santa Cruz, CA, USA.
| | - Giulio Formenti
- The Vertebrate Genome Laboratory, The Rockefeller University, New York, NY, USA
- Department of Biology, University of Florence, Sesto Fiorentino, Italy
| | - Alice Mouton
- Department of Biology, University of Florence, Sesto Fiorentino, Italy
- InBios-Conservation Genetics Laboratory, University of Liege, Liege, Belgium
| | - Diego De Panis
- Leibniz Institut für Zoo und Wildtierforschung, Berlin, Germany
- Berlin Center for Genomics in Biodiversity Research, Berlin, Germany
| | - Luísa S Marins
- Leibniz Institut für Zoo und Wildtierforschung, Berlin, Germany
- Berlin Center for Genomics in Biodiversity Research, Berlin, Germany
| | | | | | - Joseph Kirangwa
- Institute of Zoology, University of Cologne, Cologne, Germany
| | - Marco Morselli
- Department of Chemistry, Life Sciences and Environmental Sustainability, University of Parma, Parma, Italy
| | - Judit Salces-Ortiz
- Institute of Evolutionary Biology (CSIC-Universitat Pompeu Fabra), Barcelona, Spain
| | - Nuria Escudero
- Institute of Evolutionary Biology (CSIC-Universitat Pompeu Fabra), Barcelona, Spain
| | - Alessio Iannucci
- Department of Biology, University of Florence, Sesto Fiorentino, Italy
| | - Chiara Natali
- Department of Biology, University of Florence, Sesto Fiorentino, Italy
| | - Hannes Svardal
- Department of Biology, University of Antwerp, Antwerp, Belgium
- Naturalis Biodiversity Center, Leiden, The Netherlands
| | - Rosa Fernández
- Institute of Evolutionary Biology (CSIC-Universitat Pompeu Fabra), Barcelona, Spain
| | - Tim De Pooter
- Neuromics Support Facility, VIB Center for Molecular Neurology, VIB, Antwerp, Belgium
- Neuromics Support Facility, Department of Biomedical Sciences, University of Antwerp, Antwerp, Belgium
| | - Geert Joris
- Neuromics Support Facility, VIB Center for Molecular Neurology, VIB, Antwerp, Belgium
- Neuromics Support Facility, Department of Biomedical Sciences, University of Antwerp, Antwerp, Belgium
| | - Mojca Strazisar
- Neuromics Support Facility, VIB Center for Molecular Neurology, VIB, Antwerp, Belgium
- Neuromics Support Facility, Department of Biomedical Sciences, University of Antwerp, Antwerp, Belgium
| | | | - Katie E Herron
- School of Biology and Environmental Science, University College Dublin, Belfield, Ireland
| | - Ole Seehausen
- Aquatic Ecology & Evolution, Institute of Ecology & Evolution, University of Bern, Bern, Switzerland
- Department of Fish Ecology & Evolution, Eawag, Kastanienbaum, Switzerland
| | - Phillip C Watts
- Department of Biological and Environmental Science, University of Jyvaskyla, Jyvaskyla, Finland
| | - Felix Shaw
- The Earlham Institute, Norwich Research Park, Norwich, UK
| | - Robert P Davey
- The Earlham Institute, Norwich Research Park, Norwich, UK
| | | | - José M Fernández
- Barcelona Supercomputing Center; Spanish National Bioinformatics Institute, ELIXIR Spain, Getafe, Spain
| | - Astrid Böhne
- Leibniz Institute for the Analysis of Biodiversity Change, Museum Koenig Bonn, Bonn, Germany
| | - Carla Alegria
- CE3C-Centre for Ecology, Evolution and Environmental Changes & CHANGE-Global Change and Sustainability Institute, Faculdade de Ciências, Universidade de Lisboa, Campo Grande, Lisboa, Portugal
| | - Tyler Alioto
- Centro Nacional de Análisis Genómico (CNAG), Barcelona, Spain
- Universitat de Barcelona (UB), Barcelona, Spain
| | - Paulo C Alves
- CIBIO, Centro de Investigacao em Biodiversidade e Recursos Geneticos, InBIO Laboratorio Associado, Universidade do Porto, Vairao, Portugal
- Departamento de Biologia, Faculdade de Ciencias, Universidade do Porto, Porto, Portugal
- BIOPOLIS Program in Genomics, Biodiversity and Land Planning, CIBIO, Campus de Vairao, Vairao, Portugal
| | - Isabel R Amorim
- University of the Azores, cE3c-Centre for Ecology, Evolution and Environmental Changes, Azorean Biodiversity Group, CHANGE-Global Change and Sustainability Institute, Rua Capitão João d´Ávila, Pico da Urze, Angra do Heroísmo, Portugal
| | - Jean-Marc Aury
- Génomique Métabolique, Genoscope, Institut François Jacob, CEA, CNRS, Univ Evry, Université Paris-Saclay, Evry, France
| | - Niclas Backstrom
- Evolutionary Biology Program, Department of Ecology and Genetics, Uppsala University, Uppsala, Sweden
| | - Petr Baldrian
- Institute of Microbiology of the Czech Academy of Sciences, Praha, Czech Republic
| | | | - Endre Barta
- Institute of Biochemistry and Molecular Biology, Faculty of Medicine, University of Debrecen, Debrecen, Hungary
| | - Bertrand BedHom
- Institut de Systematique, Evolution, Biodiversite, Museum National d Histoire Naturelle, CNRS, Sorbonne Université, EPHE, Université des Antilles, Paris, France
| | - Caroline Belser
- Génomique Métabolique, Genoscope, Institut François Jacob, CEA, CNRS, Univ Evry, Université Paris-Saclay, Evry, France
| | - Johannes Bergsten
- Department of Zoology, Swedish Museum of Natural History, Stockholm, Sweden
- Department of Zoology, Faculty of Science, Stockholm University, Stockholm, Sweden
| | - Laurie Bertrand
- Genoscope, Institut François Jacob, CEA, Université Paris-Saclay, Evry, France
| | | | - Mahesh Binzer-Panchal
- SciLifeLab, Solna, Sweden
- Uppsala University, Uppsala, Sweden
- National Bioinformatics Infrastructure Sweden, Uppsala, Sweden
| | - Iliana Bista
- Senckenberg Research Institute, Frankfurt, Germany
- LOEWE Centre for Translational Biodiversity Genomics, Frankfurt, Germany
- Wellcome CRUK Gurdon Institute, University of Cambridge, Cambridge, UK
| | - Mark Blaxter
- Tree of Life, Wellcome Sanger Institute, Hinxton, Cambridge, UK
| | - Paulo A V Borges
- University of the Azores, cE3c-Centre for Ecology, Evolution and Environmental Changes, Azorean Biodiversity Group, CHANGE-Global Change and Sustainability Institute, Rua Capitão João d´Ávila, Pico da Urze, Angra do Heroísmo, Portugal
| | - Guilherme Borges Dias
- SciLifeLab, Solna, Sweden
- Uppsala University, Uppsala, Sweden
- National Bioinformatics Infrastructure Sweden, Uppsala, Sweden
| | - Mirte Bosse
- VU University Amsterdam, Amsterdam, The Netherlands
- Animal Breeding & Genomics, Wageningen University & Research, Wageningen, The Netherlands
- Wageningen University & Research, Wageningen, The Netherlands
| | - Tom Brown
- Leibniz Institut für Zoo und Wildtierforschung, Berlin, Germany
- Berlin Center for Genomics in Biodiversity Research, Berlin, Germany
- Max Planck Institute of Molecular Cell Biology and Genetics, Dresden, Germany
- DRESDEN concept Genome Center, Dresden, Germany
| | - Rémy Bruggmann
- Interfaculty Bioinformatics Unit and Swiss Institute of Bioinformatics, University of Bern, Bern, Switzerland
| | - Elena Buena-Atienza
- Institute of Medical Genetics and Applied Genomics, University of Tubingen, Tubingen, Germany
- NGS Competence Center Tubingen, Tubingen, Germany
| | - Josephine Burgin
- European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge, UK
| | - Elena Buzan
- University of Primorska, Faculty of Mathematics, Natural Sciences and Information Technologies, Koper, Slovenia
- Faculty of Environmental Protection, Velenje, Slovenia
| | - Alessia Cariani
- Department of Biological, Geological and Environmental Sciences, Alma Mater Studiorum Universitá di Bologna, Bologna, Italy
| | - Nicolas Casadei
- Institute of Medical Genetics and Applied Genomics, University of Tubingen, Tubingen, Germany
- NGS Competence Center Tubingen, Tubingen, Germany
| | - Matteo Chiara
- Department of Biosciences, Università degli Studi di Milano, Milan, Italy
- Institute of Biomembranes, Bioenergetics and Molecular Biotechnologies, Consiglio Nazionale delle Ricerche, Bari, Italy
| | - Sergio Chozas
- CE3C-Centre for Ecology, Evolution and Environmental Changes & CHANGE-Global Change and Sustainability Institute, Faculdade de Ciências, Universidade de Lisboa, Campo Grande, Lisboa, Portugal
- Sociedade Portuguesa de Botânica, Lisbon, Portugal
| | - Fedor Čiampor
- Department of Biodiversity and Ecology, Plant Science and Biodiversity Centre Slovak Academy of Sciences, Bratislava, Slovakia
| | - Angelica Crottini
- CIBIO, Centro de Investigacao em Biodiversidade e Recursos Geneticos, InBIO Laboratorio Associado, Universidade do Porto, Vairao, Portugal
- Departamento de Biologia, Faculdade de Ciencias, Universidade do Porto, Porto, Portugal
- BIOPOLIS Program in Genomics, Biodiversity and Land Planning, CIBIO, Campus de Vairao, Vairao, Portugal
| | - Corinne Cruaud
- Genoscope, Institut François Jacob, CEA, Université Paris-Saclay, Evry, France
| | - Fernando Cruz
- Centro Nacional de Análisis Genómico (CNAG), Barcelona, Spain
- Universitat de Barcelona (UB), Barcelona, Spain
| | - Love Dalen
- Department of Zoology, Stockholm University, Stockholm, Sweden
- Department of Bioinformatics and Genetics, Swedish Museum of Natural History, Stockholm, Sweden
- Centre for Palaeogenetics, Stockholm, Sweden
| | - Alessio De Biase
- Department of Biology and Biotechnologies, Sapienza University of Rome, Rome, Italy
| | - Javier Del Campo
- Institute of Evolutionary Biology (CSIC-Universitat Pompeu Fabra), Barcelona, Spain
| | - Teo Delic
- University of Ljubljana, Biotechnical Faculty, Department of Biology, Ljubljana, Slovenia
| | - Alice B Dennis
- University of Namur, Department of Biology, URBE, ILEE, Namur, Belgium
| | - Martijn F L Derks
- Animal Breeding & Genomics, Wageningen University & Research, Wageningen, The Netherlands
| | | | - Mihajla Djan
- Department of Biology and Ecology, University of Novi Sad, Novi Sad, Serbia
| | - Simone Duprat
- Génomique Métabolique, Genoscope, Institut François Jacob, CEA, CNRS, Univ Evry, Université Paris-Saclay, Evry, France
| | - Klara Eleftheriadi
- Institute of Evolutionary Biology (CSIC-Universitat Pompeu Fabra), Barcelona, Spain
| | - Philine G D Feulner
- Eawag Swiss Federal Institute of Aquatic Science and Technology, Department of Fish Ecology & Evolution, Kastanienbaum, Switzerland
| | - Jean-François Flot
- Department of Organismal Biology, Universite libre de Bruxelles, Brussels, Belgium
| | - Giobbe Forni
- Department of Biological, Geological and Environmental Sciences, Alma Mater Studiorum Universitá di Bologna, Bologna, Italy
| | - Bruno Fosso
- Department of Biosciences, Biotechnology and Environment, University of Bari Aldo Moro, Bari, Italy
| | - Pascal Fournier
- Groupe de Recherche et d Etude pour la Gestion de l Environnement, Villandraut, France
| | | | - Toni Gabaldon
- Barcelona Supercomputing Centre (BSC), Barcelona, Spain
- Institute for Research in Biomedicine (IRB), Barcelona, Spain
- Catalan Institution for Research and Advanced Studies (ICREA), Barcelona, Spain
- CIBERINFEC, Instituto Carlos III, Barcelona, Spain
| | - Shilpa Garg
- NNF Center for Biosustainability, Technical University of Denmark, Kongens Lyngby, Denmark
| | - Carmela Gissi
- Institute of Biomembranes, Bioenergetics and Molecular Biotechnologies, Consiglio Nazionale delle Ricerche, Bari, Italy
- Department of Biosciences, Biotechnology and Environment, University of Bari Aldo Moro, Bari, Italy
- CoNISMa, Consorzio Nazionale Interuniversitario per le Scienze del Mare, Roma, Italy
| | - Luca Giupponi
- Centre of Applied Studies for the Sustainable Management and Protection of Mountain Areas CRC Ge.S.Di.Mont., University of Milan, Milan, Italy
- Department of Agricultural and Environmental Sciences-Production, Landscape and Agroenergy DiSAA, University of Milan, Milan, Italy
| | - Jessica Gomez-Garrido
- Centro Nacional de Análisis Genómico (CNAG), Barcelona, Spain
- Universitat de Barcelona (UB), Barcelona, Spain
| | - Josefa González
- Institute of Evolutionary Biology (CSIC-Universitat Pompeu Fabra), Barcelona, Spain
| | - Miguel L Grilo
- Marine and Environmental Sciences Centre, Aquatic Research Network, Instituto Universitário de Ciências Psicológicas, Sociais e da Vida, Lisboa, Portugal
- Egas Moniz Center for Interdisciplinary Research (CiiEM), Egas Moniz School of Health & Science, Caparica, Portugal
| | - Björn Grüning
- Bioinformatics Group, Department of Computer Science, Albert-Ludwigs-University Freiburg, Freiburg, Germany
| | - Thomas Guerin
- Génomique Métabolique, Genoscope, Institut François Jacob, CEA, CNRS, Univ Evry, Université Paris-Saclay, Evry, France
| | | | - Marta Gut
- Centro Nacional de Análisis Genómico (CNAG), Barcelona, Spain
- Universitat de Barcelona (UB), Barcelona, Spain
| | - Marcel P Haesler
- Aquatic Ecology & Evolution, Institute of Ecology & Evolution, University of Bern, Bern, Switzerland
- Department of Fish Ecology & Evolution, Eawag, Kastanienbaum, Switzerland
| | - Christoph Hahn
- Department of Biology, University of Graz, Graz, Austria
| | - Balint Halpern
- MME BirdLife Hungary, Budapest, Hungary
- Doctoral School of Biology, Department of Systematic Zoology and Ecology, Institute of Biology, ELTE Eotvos Lorand University, Budapest, Hungary
- HUN-REN-ELTE-MTM Integrative Ecology Research Group, Budapest, Hungary
| | - Peter W Harrison
- European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge, UK
| | - Julia Heintz
- SciLifeLab, Solna, Sweden
- Uppsala University, Uppsala, Sweden
- National Bioinformatics Infrastructure Sweden, Uppsala, Sweden
| | - Maris Hindrikson
- Department of Zoology, Institute of Ecology and Earth Sciences, University of Tartu, Tartu, Estonia
| | - Jacob Höglund
- Institute of Life and Environmental Sciences, University of Iceland, Reykjavik, Iceland
| | - Kerstin Howe
- Tree of Life, Wellcome Sanger Institute, Hinxton, Cambridge, UK
| | - Graham M Hughes
- School of Biology and Environmental Science, University College Dublin, Belfield, Ireland
- UCD Conway Institute, University College Dublin, Belfield, Ireland
| | - Benjamin Istace
- Génomique Métabolique, Genoscope, Institut François Jacob, CEA, CNRS, Univ Evry, Université Paris-Saclay, Evry, France
| | - Mark J Cock
- Algal Genetics Group, UMR 8227, CNRS, Sorbonne Universite, UPMC University Paris 06, Paris, France
- France Integrative Biology of Marine Models, Station Biologique de Roscoff, Roscoff, France
| | - Franc Janžekovič
- University of Maribor, Faculty of Natural Sciences and Mathematics, Maribor, Slovenia
| | - Zophonias O Jonsson
- Institute of Life and Environmental Sciences, University of Iceland, Reykjavik, Iceland
| | - Sagane Joye-Dind
- Department of Ecology and Evolution, University of Lausanne, Lausanne, Switzerland
- Swiss Institute of Bioinformatics, Lausanne, Switzerland
| | - Janne J Koskimäki
- Ecology and Genetics Research Unit, University of Oulu, Oulu, Finland
| | - Boris Krystufek
- Slovenian Museum of Natural History, Ljubljana, Slovenia
- Science and Research Centre Koper, Koper, Slovenia
| | - Justyna Kubacka
- Museum and Institute of Zoology, Polish Academy of Sciences, Warsaw, Poland
| | - Heiner Kuhl
- Department IV Fish Biology, Fisheries and Aquaculture, Leibniz Institute of Freshwater Ecology and Inland Fisheries, Berlin, Germany
| | - Szilvia Kusza
- University of Debrecen, Centre for Agricultural Genomics and Biotechnology, Debrecen, Hungary
| | - Karine Labadie
- Genoscope, Institut François Jacob, CEA, Université Paris-Saclay, Evry, France
| | - Meri Lähteenaro
- Department of Zoology, Swedish Museum of Natural History, Stockholm, Sweden
- Department of Zoology, Faculty of Science, Stockholm University, Stockholm, Sweden
| | - Henrik Lantz
- SciLifeLab, Solna, Sweden
- Uppsala University, Uppsala, Sweden
- National Bioinformatics Infrastructure Sweden, Uppsala, Sweden
| | - Anton Lavrinienko
- Laboratory of Food Systems Biotechnology, Institute of Food, Nutrition, and Health, ETH Zurich, Zurich, Switzerland
| | - Lucas Leclère
- Sorbonne Université, CNRS, Biologie Intégrative des Organismes Marins (BIOM), Banyuls-sur-Mer, France
| | - Ricardo Jorge Lopes
- CE3C-Centre for Ecology, Evolution and Environmental Changes & CHANGE-Global Change and Sustainability Institute, Faculdade de Ciências, Universidade de Lisboa, Campo Grande, Lisboa, Portugal
- MHNC-UP, Natural History and Science Museum of the University of Porto, Porto, Portugal
| | - Ole Madsen
- Animal Breeding & Genomics, Wageningen University & Research, Wageningen, The Netherlands
| | | | - Giulia Magoga
- Department of Agricultural Sciences, University of Naples Federico II, Portici, Italy
| | - Tereza Manousaki
- Hellenic Centre for Marine Research (HCMR), Institute of Marine Biology, Biotechnology and Aquaculture (IMBBC), Heraklion, Crete, Greece
| | - Tapio Mappes
- Department of Biological and Environmental Science, University of Jyvaskyla, Jyvaskyla, Finland
| | - Joao Pedro Marques
- CIBIO, Centro de Investigacao em Biodiversidade e Recursos Geneticos, InBIO Laboratorio Associado, Universidade do Porto, Vairao, Portugal
- BIOPOLIS Program in Genomics, Biodiversity and Land Planning, CIBIO, Campus de Vairao, Vairao, Portugal
| | | | - Florian Maumus
- Universite Paris Saclay, INRAE, URGI, Versailles, France
| | - Shane A McCarthy
- Department of Genetics, University of Cambridge, Cambridge, UK
- Wellcome Sanger Institute, Cambridge, UK
| | - Hendrik-Jan Megens
- Animal Breeding & Genomics, Wageningen University & Research, Wageningen, The Netherlands
| | - Jose Melo-Ferreira
- CIBIO, Centro de Investigacao em Biodiversidade e Recursos Geneticos, InBIO Laboratorio Associado, Universidade do Porto, Vairao, Portugal
- BIOPOLIS Program in Genomics, Biodiversity and Land Planning, CIBIO, Campus de Vairao, Vairao, Portugal
- Departamento de Biologia, Faculdade de Ciencias da Universidade do Porto, Porto, Portugal
| | - Sofia L Mendes
- CE3C-Centre for Ecology, Evolution and Environmental Changes & CHANGE-Global Change and Sustainability Institute, Faculdade de Ciências, Universidade de Lisboa, Campo Grande, Lisboa, Portugal
| | - Matteo Montagna
- Department of Agricultural Sciences, University of Naples Federico II, Portici, Italy
- Interuniversity Center for Studies on Bioinspired Agro Environmental Technology, University of Naples Federico II, Naples, Italy
| | - Joao Moreno
- CE3C-Centre for Ecology, Evolution and Environmental Changes & CHANGE-Global Change and Sustainability Institute, Faculdade de Ciências, Universidade de Lisboa, Campo Grande, Lisboa, Portugal
- MARE Marine and Environmental Sciences Centre, ARNET Aquatic Research Network, Lisboa, Portugal
| | - Mai-Britt Mosbech
- SciLifeLab, Solna, Sweden
- Uppsala University, Uppsala, Sweden
- National Bioinformatics Infrastructure Sweden, Uppsala, Sweden
| | - Mónica Moura
- CIBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, InBIO Laboratório Associado, Pólo dos Açores; Faculdade de Ciências e Tecnologia, Universidade dos Açores, Ponta Delgada, Portugal
- UNESCO, Chair Land Within Sea Biodiversity & Sustainability in Atlantic Islands, Portugal
| | - Zuzana Musilova
- Department of Zoology, Faculty of Science, Charles University, Prague, Czech Republic
| | - Eugene Myers
- Max Planck Institute of Molecular Cell Biology and Genetics, Dresden, Germany
- DRESDEN concept Genome Center, Dresden, Germany
| | - Will J Nash
- The Earlham Institute, Norwich Research Park, Norwich, UK
| | - Alexander Nater
- Interfaculty Bioinformatics Unit and Swiss Institute of Bioinformatics, University of Bern, Bern, Switzerland
| | - Pamela Nicholson
- Next Generation Sequencing Platform, University of Bern, Bern, Switzerland
| | - Manuel Niell
- Andorra Research and Innovation, Sant Julià de Lòria, Andorra
| | - Reindert Nijland
- Marine Animal Ecology Group, Wageningen University and Research, Wageningen, The Netherlands
| | - Benjamin Noel
- University of the Azores, cE3c-Centre for Ecology, Evolution and Environmental Changes, Azorean Biodiversity Group, CHANGE-Global Change and Sustainability Institute, Rua Capitão João d´Ávila, Pico da Urze, Angra do Heroísmo, Portugal
| | - Karin Noren
- Department of Zoology, Stockholm University, Stockholm, Sweden
| | - Pedro H Oliveira
- Génomique Métabolique, Genoscope, Institut François Jacob, CEA, CNRS, Univ Evry, Université Paris-Saclay, Evry, France
| | - Remi-Andre Olsen
- Science for Life Laboratory, Department of Biochemistry and Biophysics, Stockholm University, Solna, Sweden
| | - Lino Ometto
- Department of Biology and Biotechnology, University of Pavia, Pavia, Italy
- National Biodiversity Future Center, Palermo, Italy
| | - Rebekah A Oomen
- Centre for Ecological and Evolutionary Synthesis, University of Oslo, Oslo, Norway
- University of New Brunswick Saint John, Saint John, New Brunswick, Canada
| | - Stephan Ossowski
- Institute for Medical Genetics and Applied Genomics, University of Tubingen, Tubingen, Germany
- NGS Competence Center Tubingen (NCCT), University of Tubingen, Tubingen, Germany
- Institute for Bioinformatics and Medical Informatics (IBMI), University of Tubingen, Tubingen, Germany
| | | | - Snaebjorn Palsson
- Institute of Life and Environmental Sciences, University of Iceland, Reykjavik, Iceland
| | - Jerome P Panibe
- Biodiversity Research Center, Academia Sinica, Taipei, Taiwan
| | - Joana Pauperio
- European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge, UK
| | | | - Emilie Payen
- Genoscope, Institut François Jacob, CEA, Université Paris-Saclay, Evry, France
| | | | - Jaume Pellicer
- Institut Botànic de Barcelona, IBB (CSIC-CMCNB), Passeig del Migdia s.n., Parc de Montjüic, Barcelona, Spain
| | - Graziano Pesole
- University of Bari Aldo Moro, Department of Biosciences, Biotechnology and Environment; Institute of Biomembranes, Bioenergetics and Molecular Biotechnologies, Consiglio Nazionale delle Ricerche, Bari, Italy
| | - Joao Pimenta
- CIBIO, Centro de Investigacao em Biodiversidade e Recursos Geneticos, InBIO Laboratorio Associado, Universidade do Porto, Vairao, Portugal
- Wellcome Sanger Institute, Cambridge, UK
| | - Martin Pippel
- SciLifeLab, Solna, Sweden
- Uppsala University, Uppsala, Sweden
- National Bioinformatics Infrastructure Sweden, Uppsala, Sweden
| | | | - Nikos Poulakakis
- Department of Biology, School of Sciences and Engineering, University of Crete, Voutes University Campus, Irakleio, Greece
- Natural History Museum of Crete, School of Sciences and Engineering, University of Crete, Irakleio, Greece
| | - Jeena Rajan
- European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge, UK
| | - Rúben M C Rego
- CIBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, InBIO Laboratório Associado, Pólo dos Açores; Faculdade de Ciências e Tecnologia, Universidade dos Açores, Ponta Delgada, Portugal
- UNESCO, Chair Land Within Sea Biodiversity & Sustainability in Atlantic Islands, Portugal
| | - Roberto Resendes
- Universidade dos Acores, Departamento de Biologia, Ponta Delgada, Portugal
| | - Philipp Resl
- Department of Biology, University of Graz, Graz, Austria
| | - Ana Riesgo
- Department of Biodiversity and Evolutionary Biology, Museo Nacional de Ciencias Naturales, Madrid, Spain
| | | | - Andre E R Soares
- SciLifeLab, Solna, Sweden
- Uppsala University, Uppsala, Sweden
- National Bioinformatics Infrastructure Sweden, Uppsala, Sweden
| | - Carlos Rodriguez Fernandes
- CE3C-Centre for Ecology, Evolution and Environmental Changes & CHANGE-Global Change and Sustainability Institute, Faculdade de Ciências, Universidade de Lisboa, Campo Grande, Lisboa, Portugal
- Faculdade de Psicologia, Universidade de Lisboa, Lisboa, Portugal
| | - Maria M Romeiras
- CE3C-Centre for Ecology, Evolution and Environmental Changes & CHANGE-Global Change and Sustainability Institute, Faculdade de Ciências, Universidade de Lisboa, Campo Grande, Lisboa, Portugal
- Linking Landscape, Environment, Agriculture and Food, Associated Laboratory TERRA, Instituto Superior de Agronomia, Universidade de Lisboa, Lisboa, Portugal
- Portugal Centre for Ecology, Evolution and Environmental Changes, Lisbon, Portugal
| | - Guilherme Roxo
- CIBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, InBIO Laboratório Associado, Pólo dos Açores; Faculdade de Ciências e Tecnologia, Universidade dos Açores, Ponta Delgada, Portugal
- UNESCO, Chair Land Within Sea Biodiversity & Sustainability in Atlantic Islands, Portugal
| | - Lukas Rüber
- Aquatic Ecology & Evolution, Institute of Ecology & Evolution, University of Bern, Bern, Switzerland
- Naturhistorisches Museum Bern, Bern, Switzerland
| | - Maria Jose Ruiz-Lopez
- Departamento de Biología de la Conservación y Cambio Global, Estación Biológica de Doñana (EBD), CSIC, Sevilla, Spain
- CIBER of Epidemiology and Public Health, Granada, Spain
| | - Urmas Saarma
- Department of Zoology, Institute of Ecology and Earth Sciences, University of Tartu, Tartu, Estonia
| | - Luis P da Silva
- CIBIO, Centro de Investigacao em Biodiversidade e Recursos Geneticos, InBIO Laboratorio Associado, Universidade do Porto, Vairao, Portugal
- BIOPOLIS Program in Genomics, Biodiversity and Land Planning, CIBIO, Campus de Vairao, Vairao, Portugal
| | - Manuela Sim-Sim
- CE3C-Centre for Ecology, Evolution and Environmental Changes & CHANGE-Global Change and Sustainability Institute, Faculdade de Ciências, Universidade de Lisboa, Campo Grande, Lisboa, Portugal
- Museu Nacional de História Natural e da Ciência, Lisboa, Portugal
- Departamento de Biologia Vegetal, Faculdade de Ciências, Universidade de Lisboa, Lisboa, Portugal
| | - Lucile Soler
- SciLifeLab, Solna, Sweden
- Uppsala University, Uppsala, Sweden
- National Bioinformatics Infrastructure Sweden, Uppsala, Sweden
| | - Vitor C Sousa
- CE3C-Centre for Ecology, Evolution and Environmental Changes & CHANGE-Global Change and Sustainability Institute, Faculdade de Ciências, Universidade de Lisboa, Campo Grande, Lisboa, Portugal
- Departamento de Biologia Animal, Faculdade de Ciências da Universidade de Lisboa, Lisboa, Portugal
| | - Carla Sousa Santos
- MARE Marine and Environmental Sciences Centre, ARNET Aquatic Research Network, Lisboa, Portugal
| | - Alberto Spada
- Department of Agricultural and Environmental Sciences Production, Landscape, Agroenergy, University of Milan, Milan, Italy
| | - Milomir Stefanovic
- Department of Biology and Ecology, University of Novi Sad, Novi Sad, Serbia
| | - Viktor Steger
- Department of Genetics and Genomics, Institute of Genetics and Biotechnology, Hungarian University of Agriculture and Life Sciences, Godollo, Hungary
| | - Josefin Stiller
- Section for Ecology and Evolution, Department of Biology, University of Copenhagen, Copenhagen, Denmark
| | - Matthias Stöck
- Department IV Fish Biology, Fisheries and Aquaculture, Leibniz Institute of Freshwater Ecology and Inland Fisheries, Berlin, Germany
| | - Torsten H Struck
- Natural History Museum, University of Oslo, Blindern, Oslo, Norway
| | - Hiranya Sudasinghe
- Naturhistorisches Museum Bern, Bern, Switzerland
- Division of Evolutionary Ecology, Institute of Ecology and Evolution, University of Bern, Bern, Switzerland
| | | | - Christian Tellgren-Roth
- SciLifeLab, Solna, Sweden
- Uppsala University, Uppsala, Sweden
- National Bioinformatics Infrastructure Sweden, Uppsala, Sweden
| | - Helena Trindade
- CE3C-Centre for Ecology, Evolution and Environmental Changes & CHANGE-Global Change and Sustainability Institute, Faculdade de Ciências, Universidade de Lisboa, Campo Grande, Lisboa, Portugal
- Departamento de Biologia Vegetal, Faculdade de Ciências, Universidade de Lisboa, Lisboa, Portugal
| | - Yevhen Tukalenko
- Institute for Nuclear Research of the NAS of Ukraine, Kyiv, Ukraine
| | - Ilenia Urso
- Institute of Biomembranes, Bioenergetics and Molecular Biotechnologies, Consiglio Nazionale delle Ricerche, Bari, Italy
| | - Benoit Vacherie
- Genoscope, Institut François Jacob, CEA, Université Paris-Saclay, Evry, France
| | - Steven M Van Belleghem
- Ecology, Evolution and Conservation Biology, Department of Biology, KU Leuven, Leuven, Belgium
| | - Kees Van Oers
- Department of Animal Ecology, Netherlands Institute of Ecology, Wageningen, The Netherlands
| | - Carlos Vargas-Chavez
- Institute of Evolutionary Biology (CSIC-Universitat Pompeu Fabra), Barcelona, Spain
| | - Nevena Velickovic
- Department of Biology and Ecology, University of Novi Sad, Novi Sad, Serbia
| | - Noel Vella
- Conservation Biology Research Group, Department of Biology, University of Malta, Msida, Malta
| | - Adriana Vella
- Conservation Biology Research Group, Department of Biology, University of Malta, Msida, Malta
| | - Cristiano Vernesi
- Forest Ecology Unit, Research and Innovation Centre-Fondazione Edmund Mach, San Michele All'Adige, Italy
| | - Sara Vicente
- CE3C-Centre for Ecology, Evolution and Environmental Changes & CHANGE-Global Change and Sustainability Institute, Faculdade de Ciências, Universidade de Lisboa, Campo Grande, Lisboa, Portugal
- ERISA Escola Superior de Saúde Ribeiro Sanches, IPLUSO, Lisboa, Portugal
| | - Sara Villa
- Institute for Sustainable Plant Protection, National Research Council, Sesto Fiorentino, Italy
- Department of Agricultural and Environmental Sciences, University of Milan via Giovanni Celoria 2, Milan, Italy
| | - Olga Vinnere Pettersson
- SciLifeLab, Solna, Sweden
- Uppsala University, Uppsala, Sweden
- National Bioinformatics Infrastructure Sweden, Uppsala, Sweden
| | - Filip A M Volckaert
- Laboratory of Biodiversity and Evolutionary Genomics, KU Leuven, Leuven, Belgium
| | - Judit Voros
- Department of Zoology, Hungarian Natural History Museum, Budapest, Hungary
| | - Patrick Wincker
- Génomique Métabolique, Genoscope, Institut François Jacob, CEA, CNRS, Univ Evry, Université Paris-Saclay, Evry, France
| | - Sylke Winkler
- Department of Zoology, Faculty of Science, Charles University, Prague, Czech Republic
| | - Claudio Ciofi
- Department of Biology, University of Florence, Sesto Fiorentino, Italy
| | - Robert M Waterhouse
- Department of Ecology and Evolution, University of Lausanne, Lausanne, Switzerland
- Swiss Institute of Bioinformatics, Lausanne, Switzerland
| | - Camila J Mazzoni
- Leibniz Institut für Zoo und Wildtierforschung, Berlin, Germany
- Berlin Center for Genomics in Biodiversity Research, Berlin, Germany
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