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Laurent J, Le Berre I, Armengaud J, Waeles M, Sturbois A, Durand G, Le Floch S, Laroche J, Pichereau V. Environmental signatures and fish proteomics: a multidisciplinary study to identify the major stressors in estuaries located in French agricultural watersheds. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2024:124876. [PMID: 39383988 DOI: 10.1016/j.envpol.2024.124876] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/08/2023] [Revised: 08/22/2024] [Accepted: 08/31/2024] [Indexed: 10/11/2024]
Abstract
Watersheds and estuaries are impacted by multiple anthropogenic stressors that affect their biodiversity and functioning. Assessing their ecological quality has consequently remained challenging for scientists and stakeholders. In this paper, we propose a multidisciplinary approach to identify the stressors in seven small French estuaries located in agricultural watersheds. We collected data from landscape (geography, hydrobiology) to estuary (pollutant chemistry) and fish individual scales (environmental signatures, proteomics). This integrative approach focused on the whole hydrosystems, from river basins to estuaries. To characterize each watershed, we attempted to determine the land use considering geographic indicators (agricultural and urbanised surfaces) and landscape patterns (hedges density and riparian vegetation). Juveniles of European flounder (Platichthys flesus) were captured in September, after an average residence of five summer months in the estuary. Analyses of water, sediments and biota allowed to determine the concentrations of dissolved inorganic nitrogen species, pesticides and trace elements in the systems. Environmental signatures were also measured in flounder tissues. These environmental parameters were used to establish a typology of the watersheds. Furthermore, data from proteomics on fish liver were combined with environmental signatures to determine the responses of fish to stressors in their environments. Differential protein abundances highlighted a dysregulation related to the detoxification of xenobiotics (mainly pesticides) in agricultural watersheds, characterized by intensive cereal and vegetable crops and high livestock. Omics also revealed a dysregulation of proteins associated with the response to hypoxia and heat stress in some estuaries. Furthermore, we highlighted a dysregulation of proteins involved in urea cycle, immunity and metabolism of fatty acids in several systems. Finally, the combination of environmental and molecular signatures appears to be a relevant method to identify the major stressors operating within hydrosystems.
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Affiliation(s)
- Jennifer Laurent
- Univ Brest - CNRS - IRD - Ifremer, UMR 6539 LEMAR, IUEM-Université de Bretagne Occidentale, Rue Dumont D'Urville, 29280 Plouzané, France; CEDRE, 715 rue Alain Colas, 29200 Brest, France
| | - Iwan Le Berre
- Univ Brest - CNRS, UMR 6554 LETG-Brest GEOMER, IUEM-Université de Bretagne Occidentale, Rue Dumont D'Urville, 29280 Plouzané, France
| | - Jean Armengaud
- Laboratoire Innovations Technologiques pour la Détection et le Diagnostic (Li2D), Service de Pharmacologie et Immunoanalyse (SPI), CEA, INRAe, F-30207 Bagnols-sur-Cèze, France
| | - Matthieu Waeles
- Univ Brest - CNRS - IRD - Ifremer, UMR 6539 LEMAR, IUEM-Université de Bretagne Occidentale, Rue Dumont D'Urville, 29280 Plouzané, France
| | - Anthony Sturbois
- Univ Brest - CNRS - IRD - Ifremer, UMR 6539 LEMAR, IUEM-Université de Bretagne Occidentale, Rue Dumont D'Urville, 29280 Plouzané, France; Vivarmor Nature, Réserve naturelle nationale de la Baie de Saint-Brieuc, Ploufragan, France
| | - Gaël Durand
- LABOCEA, 120 Avenue Alexis de Rochon, 29280 Plouzané, France
| | | | - Jean Laroche
- Univ Brest - CNRS - IRD - Ifremer, UMR 6539 LEMAR, IUEM-Université de Bretagne Occidentale, Rue Dumont D'Urville, 29280 Plouzané, France
| | - Vianney Pichereau
- Univ Brest - CNRS - IRD - Ifremer, UMR 6539 LEMAR, IUEM-Université de Bretagne Occidentale, Rue Dumont D'Urville, 29280 Plouzané, France
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2
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Tan M, Hall KC, Litchfield S, Champion C, de Carvalho MC, Mos B, Dworjanyn S, Kelaher BP. Water temperature affects somatic growth, body condition and oxygen and carbon otolith isotopes of stout whiting (Sillago robusta). THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 945:174058. [PMID: 38897478 DOI: 10.1016/j.scitotenv.2024.174058] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/17/2024] [Revised: 05/22/2024] [Accepted: 06/14/2024] [Indexed: 06/21/2024]
Abstract
Ocean warming will continue to affect the growth, body condition and geographic distributions of marine fishes and understanding these effects is an urgent challenge for fisheries research and management. Determining how temperature is recorded in fish otolith carbonate, provides an additional chronological tool to investigate thermal histories, preferences and patterns of movement throughout an individual's life history. The influence of three water temperature treatments (22°C, 25°C, and 28°C) on hatchery-reared juvenile stout whiting, Sillago robusta, was tested using a controlled outdoor mesocosm system. Fish were measured for change in length and weight, and body condition was determined using bioelectrical impedance analysis. Sagittal otoliths were analysed for stable oxygen (δ18Ootolith) and carbon (δ13Cotolith) isotopes via isotope ratio mass spectrometry. Whiting kept at 22°C were significantly smaller and had diminished body condition compared to fish in 25°C and 28°C, which did not significantly differ from each other. The δ18O otolith values of stout whiting demonstrated a negative temperature-dependent fractionation relationship which was similar in slope but had a different intercept to the relationships reported for inorganic aragonite and other marine fish species. The δ13C otolith values also showed a negative relationship with water temperature, and the calculated proportion of metabolic carbon M in otoliths differed between fish reared in the coolest (22°C) and warmest (28°C) temperature treatments. Overall, the results suggest that stout whiting may have reached an upper growth threshold between 25°C and 28°C, and that growth and body condition may be optimised during warmer seasons and toward the northerly regions of their distribution. Otolith oxygen thermometry shows promise as a natural tracer of thermal life history, and species-specific fractionation equations should be utilised when possible to prevent errors in temperature reconstructions of wild-caught fish.
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Affiliation(s)
- Melissa Tan
- National Marine Science Centre, Southern Cross University, 2 Bay Dr, Coffs Harbour, New South Wales 2450, Australia.
| | - Karina C Hall
- Fisheries Research, NSW Department of Primary Industries, National Marine Science Centre, 2 Bay Dr, Coffs Harbour, New South Wales 2450, Australia
| | - Sebastian Litchfield
- National Marine Science Centre, Southern Cross University, 2 Bay Dr, Coffs Harbour, New South Wales 2450, Australia
| | - Curtis Champion
- Fisheries Research, NSW Department of Primary Industries, National Marine Science Centre, 2 Bay Dr, Coffs Harbour, New South Wales 2450, Australia
| | - Matheus Carvalho de Carvalho
- Southern Cross Analytical Research Services, Centre for Coastal Biogeochemistry - IRMS laboratory, Military Rd, East Lismore, New South Wales 2480, Australia
| | - Benjamin Mos
- Moreton Bay Research Station, School of the Environment, The University of Queensland, Dunwich/Goompi, QLD 4183, Australia; Centre for Marine Science, The University of Queensland, Brisbane, QLD 4072, Australia
| | - Symon Dworjanyn
- National Marine Science Centre, Southern Cross University, 2 Bay Dr, Coffs Harbour, New South Wales 2450, Australia
| | - Brendan P Kelaher
- National Marine Science Centre, Southern Cross University, 2 Bay Dr, Coffs Harbour, New South Wales 2450, Australia
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Sakamoto T, Takahashi M, Shirai K, Aono T, Ishimura T. Fisheries shocks provide an opportunity to reveal multiple recruitment sources of sardine in the Sea of Japan. Sci Rep 2024; 14:21722. [PMID: 39289567 PMCID: PMC11408631 DOI: 10.1038/s41598-024-72925-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/10/2024] [Accepted: 09/11/2024] [Indexed: 09/19/2024] Open
Abstract
The abrupt decline in sardine catches in the Sea of Japan and the East China Sea (SJ-ECS) in 2014 and 2019 and the recovery in the following years call into question the current assumption that sardines in the SJ-ECS form a self-recruiting subpopulation. To test this hypothesis, we analysed otolith stable oxygen and carbon isotope profiles (δ18O, δ13C) of age-0 and age-1 sardines from 2010 and 2013-2015 year-classes captured in the SJ-ECS, as geographic markers for nursery areas. Age-0 sardines generally showed a significant ontogenetic decrease in otolith δ18O from larval to juvenile stages. However, the majority of age-1 captured in spring 2011, 2015 and 2016 showed non-decreasing otolith δ18O profiles, suggesting that the age-0 off the Japanese coast were not the main source of recruitment. Different migration groups were thus indicated: the "locals" growing up off the Japanese coast and the migrating "nonlocals". The isotope profiles of the "nonlocals" overlapped with those of age-0 captured in the subarctic North Pacific, suggesting that they may be migrants from the Pacific, or perhaps an unobserved northward migration group in the SJ-ECS. Our results highlight the considerable uncertainty in the population structure assumed in current stock assessment models for Japanese sardine.
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Affiliation(s)
- Tatsuya Sakamoto
- Fisheries Resource Research Institute, Japan Fisheries Research and Education Agency, Nagasaki, Japan.
- Hakubi Center, Kyoto University, Yoshidanihonmatsucho, Kyoto Sakyo-ku, Kyoto, 606-8316, Japan.
| | - Motomitsu Takahashi
- Fisheries Resource Research Institute, Japan Fisheries Research and Education Agency, Nagasaki, Japan
| | - Kotaro Shirai
- Atmosphere and Ocean Research Institute, The University of Tokyo, Chiba, Japan
| | - Tomoya Aono
- Atmosphere and Ocean Research Institute, The University of Tokyo, Chiba, Japan
- Department of Chemistry and Material Engineering, National Institute of Technology, Ibaraki College, Ibaraki, Japan
| | - Toyoho Ishimura
- Department of Chemistry and Material Engineering, National Institute of Technology, Ibaraki College, Ibaraki, Japan
- Graduate School of Human and Environmental Studies, Kyoto University, Kyoto, Japan
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4
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Lee FJD, Tseng H, Chang YJ, Tseng CM. Mercury bioaccumulation and trophic transfer in Pacific Saury from the North Pacific Ocean. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2024; 357:124420. [PMID: 38909772 DOI: 10.1016/j.envpol.2024.124420] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/14/2024] [Revised: 06/12/2024] [Accepted: 06/20/2024] [Indexed: 06/25/2024]
Abstract
This study investigates mercury (Hg) dynamics in Pacific Saury (Cololabis saira) across the North Pacific Ocean, specifically off East Japan in 2018. Saury traits vary with total mercury (THg) concentrations in muscle tissues ranging from 0.017 to 0.082 μg g-1 w. w., averaging of 0.042 (n = 46). A positive correlation between THg and saury length (Knob length, 270-319 mm) indicates increased Hg concentration with size. Stable isotopic tracers suggest Pacific Euphausiids (Krill) are significant contributors to the saury diet (>70% of total). Significant correlations between logarithm THg concentration (Log THg) and δ15N (‰) (R2 = 0.70) demonstrate Hg trophic biomagnification, with regional variations. Comparative analysis between the eastern (ENPO) and western North Pacific Ocean (WNPO) indicates differences, with WNPO saury exhibiting lower δ15N values and higher THg levels than ENPO saury. This suggests that the WNPO, located near East Asia, the world's largest Hg emitter, experiences elevated Hg levels in seawater due to anthropogenic release. Overall, this study advances understanding of Pacific Saury's ecological interactions and Hg bioaccumulations, emphasizing the importance of species-specific behaviors and regional influences in ecological studies.
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Affiliation(s)
| | - Hao Tseng
- Institute of Oceanography, National Taiwan University, Taipei 106, Taiwan
| | - Yi-Jay Chang
- Institute of Oceanography, National Taiwan University, Taipei 106, Taiwan
| | - Chun-Mao Tseng
- Institute of Oceanography, National Taiwan University, Taipei 106, Taiwan.
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5
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Durante E, Grammer G, Martino J, Klaebe R, Chung MT, Payne J, Doubleday Z. Developing isotopic proxies to reconstruct the metabolic rates and thermal histories of octopus. MARINE ENVIRONMENTAL RESEARCH 2024; 198:106543. [PMID: 38728797 DOI: 10.1016/j.marenvres.2024.106543] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/28/2023] [Revised: 04/30/2024] [Accepted: 05/02/2024] [Indexed: 05/12/2024]
Abstract
Understanding an animal's metabolic rate and thermal history is pivotal for ecological research. Recent studies have proposed the use of stable carbon and oxygen isotopes (δ13C and δ18O) in biogenic carbonates as proxies of metabolic rate and experienced temperature, respectively, to overcome the challenges of directly measuring these data in the field. Our study represents the first experimental investigation to develop δ13C and δ18O proxies in octopus. Octopus berrima hatchlings were raised in captivity, at varying water temperatures, for up to 110 days. O. berrima statoliths were then subsequently analysed for δ13C and δ18O values. The proportion of metabolically derived carbon, or respired carbon (Cresp), increased as the octopus grew (slope = 0.076, R2 = 0.72), suggesting an influence of somatic growth rate and body mass on δ13C values. Additionally, we identified an inverse correlation between δ18O values and environmental temperature (slope = -0.163, R2 = 0.91), which was subsequently used to develop a thermal reconstruction model. Our experiment aids in interpreting stable isotopic values in statoliths and their application as temperature and metabolic proxies in wild-caught octopus. Such proxies will increase our monitoring capabilities of these ecologically and commercially significant cephalopods and contribute to their conservation and effective management.
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Affiliation(s)
- Erica Durante
- Future Industries Institute, University of South Australia, South Australia, Australia.
| | - Gretchen Grammer
- South Australian Research and Development Institute Aquatic Sciences, South Australia, Australia
| | - Jasmin Martino
- Future Industries Institute, University of South Australia, South Australia, Australia
| | - Robert Klaebe
- Department of Earth Sciences, School of Physics, Chemistry and Earth Sciences, University of Adelaide, South Australia, Australia
| | - Ming-Tsung Chung
- Institute of Oceanography, National Taiwan University, Taipei, Taiwan
| | - Justin Payne
- STEM, University of South Australia, Adelaide, South Australia, Australia
| | - Zoë Doubleday
- Future Industries Institute, University of South Australia, South Australia, Australia
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6
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de Groot VA, Trueman C, Bates AE. Incorporating otolith-isotope inferred field metabolic rate into conservation strategies. CONSERVATION PHYSIOLOGY 2024; 12:coae013. [PMID: 38666227 PMCID: PMC11044438 DOI: 10.1093/conphys/coae013] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/05/2022] [Revised: 02/08/2024] [Accepted: 02/24/2024] [Indexed: 04/28/2024]
Abstract
Fluctuating ocean conditions are rearranging whole networks of marine communities-from individual-level physiological thresholds to ecosystem function. Physiological studies support predictions from individual-level responses (biochemical, cellular, tissue, respiratory potential) based on laboratory experiments. The otolith-isotope method of recovering field metabolic rate has recently filled a gap for the bony fishes, linking otolith stable isotope composition to in situ oxygen consumption and experienced temperature estimates. Here, we review the otolith-isotope method focusing on the biochemical and physiological processes that yield estimates of field metabolic rate. We identify a multidisciplinary pathway in the application of this method, providing concrete research goals (field, modeling) aimed at linking individual-level physiological data to higher levels of biological organization. We hope that this review will provide researchers with a transdisciplinary 'roadmap', guiding the use of the otolith-isotope method to bridge the gap between individual-level physiology, observational field studies, and modeling efforts, while ensuring that in situ data is central in marine policy-making aimed at mitigating climatic and anthropogenic threats.
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Affiliation(s)
- Valesca A de Groot
- Department of Ocean Sciences, Memorial University of Newfoundland, St. John’s, NL, A1C 5S7, Canada
- University of Victoria, 3800 Finnerty Rd, Victoria, BCV8 P5C2, Canada
| | - Clive Trueman
- School of Ocean and Earth Science, University of Southampton, Southampton SO1 43ZH, UK
| | - Amanda E Bates
- Department of Ocean Sciences, Memorial University of Newfoundland, St. John’s, NL, A1C 5S7, Canada
- University of Victoria, 3800 Finnerty Rd, Victoria, BCV8 P5C2, Canada
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7
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Díaz-Delgado E, Girolametti F, Annibaldi A, Trueman CN, Willis TJ. Mercury bioaccumulation and its relationship with trophic biomarkers in a Mediterranean elasmobranch mesopredator. MARINE POLLUTION BULLETIN 2024; 201:116218. [PMID: 38531207 DOI: 10.1016/j.marpolbul.2024.116218] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/06/2024] [Revised: 02/29/2024] [Accepted: 03/01/2024] [Indexed: 03/28/2024]
Abstract
Human activity has led to increased concentrations of mercury (Hg) in the world's oceans. Mercury can bioaccumulate and biomagnify in animal tissues via trophic transfer, thus, becoming most pronounced in larger and older predators. Here, we measured Hg concentrations and their relationship with stable isotopes-based proxies of trophic level (δ13C and δ15N values) in multiple tissues of Mustelus spp. from the Mediterranean Sea. We found higher Hg concentrations in muscle than in liver and fin tissues. The relationship between Hg concentrations and δ15N values in muscle suggested repeated foraging for low trophic level and Hg-poor prey, and biomagnification of Hg at higher trophic levels. Seasonal variations in δ13C values could indicate shifts in primary production sources and/or in local prey availability. The HBVSe index suggested no risk to human health, however the safe meal limit recommendations are 4.5 and 2.2 portions per month for adults and children, respectively.
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Affiliation(s)
- Eric Díaz-Delgado
- Department of Integrative Marine Ecology, Stazione Zoologica Anton Dohrn, Fano Marine Center, Viale Adriatico 1/N, 61032 Fano, Italy.
| | - Federico Girolametti
- Department of Life and Environmental Sciences, Università Politecnica delle Marche, Via Brecce Bianche, 60131 Ancona, Italy
| | - Anna Annibaldi
- Department of Life and Environmental Sciences, Università Politecnica delle Marche, Via Brecce Bianche, 60131 Ancona, Italy
| | - Clive N Trueman
- Ocean and Earth Science, University of Southampton, Southampton SO143ZH, UK
| | - Trevor J Willis
- Department of Integrative Marine Ecology, Stazione Zoologica Anton Dohrn, Fano Marine Center, Viale Adriatico 1/N, 61032 Fano, Italy
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8
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Kwan GT, Andrade LR, Prime KJ, Tresguerres M. Immunohistochemical and ultrastructural characterization of the inner ear epithelial cells of splitnose rockfish ( Sebastes diploproa). Am J Physiol Regul Integr Comp Physiol 2024; 326:R277-R296. [PMID: 38189166 DOI: 10.1152/ajpregu.00223.2023] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/18/2023] [Revised: 12/01/2023] [Accepted: 01/01/2024] [Indexed: 01/09/2024]
Abstract
The inner ear of teleost fish regulates the ionic and acid-base chemistry and secretes protein matrix into the endolymph to facilitate otolith biomineralization, which is used to maintain vestibular and auditory functions. The otolith is biomineralized in a concentric ring pattern corresponding to seasonal growth, and this calcium carbonate (CaCO3) polycrystal has become a vital aging and life-history tool for fishery managers, ecologists, and conservation biologists. Moreover, biomineralization patterns are sensitive to environmental variability including climate change, thereby threatening the accuracy and relevance of otolith-reliant toolkits. However, the cellular biology of the inner ear is poorly characterized, which is a hurdle for a mechanistic understanding of the underlying processes. This study provides a systematic characterization of the cell types in the inner ear of splitnose rockfish (Sebastes diploproa). Scanning electron microscopy revealed the apical morphologies of six inner ear cell types. In addition, immunostaining and confocal microscopy characterized the expression and subcellular localization of the proteins Na+-K+-ATPase, carbonic anhydrase, V-type H+-ATPase, Na+-K+-2Cl--cotransporter, otolith matrix protein 1, and otolin-1 in six inner ear cell types bordering the endolymph. This fundamental cytological characterization of the rockfish inner ear epithelium illustrates the intricate physiological processes involved in otolith biomineralization and highlights how greater mechanistic understanding is necessary to predict their multistressor responses to future climate change.
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Affiliation(s)
- Garfield T Kwan
- Wildlife, Fish and Conservation Biology, University of California Davis, Davis, California, United States
- Scripps Institution of Oceanography, University of California San Diego, La Jolla, California, United States
| | - Leonardo R Andrade
- Waitt Advanced Biophotonics Center, Salk Institute for Biological Studies, La Jolla, California, United States
| | - Kaelan J Prime
- Scripps Institution of Oceanography, University of California San Diego, La Jolla, California, United States
| | - Martin Tresguerres
- Scripps Institution of Oceanography, University of California San Diego, La Jolla, California, United States
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9
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Whicker JJ, Gerard JL, Inglis JD, Conrad C. Allometric-kinetic model predictions of concentration ratios for anthropogenic radionuclides across animal classes and food selection. JOURNAL OF ENVIRONMENTAL RADIOACTIVITY 2023; 270:107312. [PMID: 37862883 DOI: 10.1016/j.jenvrad.2023.107312] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/07/2023] [Revised: 10/05/2023] [Accepted: 10/09/2023] [Indexed: 10/22/2023]
Abstract
Protection of the environment from radiation fundamentally relies on dose assessments for non-human biota. Many of these dose assessments use measured or predicted concentrations of radionuclides in soil or water combined with Concentration Ratios (CRs) to estimate whole body concentrations in animals and plants, yet there is a paucity of CR data relative to the vast number of potential taxa and radioactive contaminants in the environment and their taxon-specific ecosystems. Because there are many taxa each having very different behaviors and biology, and there are many possible bioavailable radionuclides, CRs have the potential to vary by orders-of-magnitude, as often seen in published data. Given the diversity of taxa, the International Commission on Radiological Protection (ICRP) has selected 12 non-human biota as reference animals and plants (RAPs), while the U.S. Department of Energy (DOE) uses the non-taxon specific categories of terrestrial, riparian, and aquatic animals. The question we examine here, in part, is: are these RAPs and categorizations sufficient to adequately protect all species given the broad diversity of animals in a region? To explore this question, we utilize an Allometric-Kinetic (A-K) model to calculate radionuclide-specific CRs for common animal classes, which are then further subcategorized into herbivores, omnivores, carnivores, and invertebrate detritivores. Comparisons in CRs among animal classes exhibited only small differences, but there was order of magnitude differences between herbivores, carnivores, and especially detritivores, for many radionuclides of interest. These findings suggest that the ICRP RAPs and the DOE categories are reasonable, but their accuracy could be improved by including sub-categories related to animal dietary ecology and biology. Finally, comparisons of A-K model predicted CR values to published CRs show order-of-magnitude variations, providing justification for additional studies of animal assimilation across radionuclides, environmental conditions, and animal classes.
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Affiliation(s)
- Jeffrey J Whicker
- Environmental Protection and Compliance Division, Environmental Stewardship Group, Los Alamos National Laboratory, P.O. Box 1663, Los Alamos, NM, 87545, USA.
| | - Jamie L Gerard
- Environmental Protection and Compliance Division, Environmental Stewardship Group, Los Alamos National Laboratory, P.O. Box 1663, Los Alamos, NM, 87545, USA
| | - Jeremy D Inglis
- Chemistry Division, Nuclear and Radiochemistry Group, Los Alamos National Laboratory, P.O. Box 1663, Los Alamos, NM, 87545, USA
| | - Cyler Conrad
- Earth Systems Science Division, Risk and Environmental Assessment Group, Pacific Northwest National Laboratory, P.O. Box 999, Richland, WA 99352, USA; Department of Anthropology, University of New Mexico, Albuquerque, NM, 87131, USA
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10
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Trueman CN, Artetxe-Arrate I, Kerr LA, Meijers AJS, Rooker JR, Sivankutty R, Arrizabalaga H, Belmonte A, Deguara S, Goñi N, Rodriguez-Marin E, Dettman DL, Santos MN, Karakulak FS, Tinti F, Tsukahara Y, Fraile I. Thermal sensitivity of field metabolic rate predicts differential futures for bluefin tuna juveniles across the Atlantic Ocean. Nat Commun 2023; 14:7379. [PMID: 38012173 PMCID: PMC10682405 DOI: 10.1038/s41467-023-41930-2] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/14/2023] [Accepted: 09/25/2023] [Indexed: 11/29/2023] Open
Abstract
Changing environmental temperatures impact the physiological performance of fishes, and consequently their distributions. A mechanistic understanding of the linkages between experienced temperature and the physiological response expressed within complex natural environments is often lacking, hampering efforts to project impacts especially when future conditions exceed previous experience. In this study, we use natural chemical tracers to determine the individual experienced temperatures and expressed field metabolic rates of Atlantic bluefin tuna (Thunnus thynnus) during their first year of life. Our findings reveal that the tuna exhibit a preference for temperatures 2-4 °C lower than those that maximise field metabolic rates, thereby avoiding temperatures warm enough to limit metabolic performance. Based on current IPCC projections, our results indicate that historically-important spawning and nursery grounds for bluefin tuna will become thermally limiting due to warming within the next 50 years. However, limiting global warming to below 2 °C would preserve habitat conditions in the Mediterranean Sea for this species. Our approach, which is based on field observations, provides predictions of animal performance and behaviour that are not constrained by laboratory conditions, and can be extended to any marine teleost species for which otoliths are available.
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Affiliation(s)
- Clive N Trueman
- Ocean and Earth Science, University of Southampton, Southampton, SO143ZH, UK.
| | - Iraide Artetxe-Arrate
- AZTI, Marine Research, Basque Research and Technology Alliance (BRTA), Herrera Kaia, Portualdea z/g, 20110, Pasaia, Gipuzkoa, Spain
| | - Lisa A Kerr
- University of Maine, Gulf of Maine Research Institute, 350 Commercial Street, Portland, ME, 04101, USA
| | - Andrew J S Meijers
- British Antarctic Survey, High Cross, Madingley Road, Cambridge, CB3 0ET, UK
| | - Jay R Rooker
- Department of Marine Biology, Department of Ecology and Conservation Biology, Texas A&M University, 200 Seawolf Parkway, Galveston, TX, 77554, USA
| | - Rahul Sivankutty
- British Antarctic Survey, High Cross, Madingley Road, Cambridge, CB3 0ET, UK
| | - Haritz Arrizabalaga
- AZTI, Marine Research, Basque Research and Technology Alliance (BRTA), Herrera Kaia, Portualdea z/g, 20110, Pasaia, Gipuzkoa, Spain
| | - Antonio Belmonte
- TAXON Estudios Ambientales S.L. C/Uruguay s/n, 30820, Alcantarilla, Murcia, Spain
| | - Simeon Deguara
- AquaBio Tech Ltd., Central Complex, Mosta, MST1761, Malta
| | - Nicolas Goñi
- AZTI, Marine Research, Basque Research and Technology Alliance (BRTA), Herrera Kaia, Portualdea z/g, 20110, Pasaia, Gipuzkoa, Spain
- Natural Resources Institute Finland, Itäinen Pitkäkatu 4 A, 20520, Turku, Finland
| | - Enrique Rodriguez-Marin
- Centro Oceanográfico de Santander (COST-IEO). Instituto Español de Oceanografía. Consejo Superior de Investigaciones Científicas (IEO-CSIC), C/ Severiano Ballesteros 16, 39004, Santander, Cantabria, Spain
| | - David L Dettman
- Environmental Isotope Laboratory, Dept. of Geosciences, University of Arizona, Tucson, AZ, 85721, USA
| | - Miguel Neves Santos
- Instituto Português do Mar e da Atmosfera, Olhão, Portugal. Currently at ICCAT Secretariat, Calle Corazón de Maria 8, Madrid, 28002, Spain
| | - F Saadet Karakulak
- Faculty of Aquatic Sciences, Istanbul University, Istanbul, 34134, Turkey
| | - Fausto Tinti
- Dept. Biological, Geological & Environmental Sciences, Alma Mater Studiorum - University of Bologna, via Sant'Alberto, 163 - 48123, Ravenna, Italy
| | - Yohei Tsukahara
- Fisheries Resources Institute, Japan Fisheries Research and Education Agency, Kanagawa, 236-8648, Japan
| | - Igaratza Fraile
- AZTI, Marine Research, Basque Research and Technology Alliance (BRTA), Herrera Kaia, Portualdea z/g, 20110, Pasaia, Gipuzkoa, Spain
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Laurent J, Le Berre I, Armengaud J, Kailasam S, Couteau J, Waeles M, Le Floch S, Laroche J, Pichereau V. Integration of environmental signatures and omics-based approaches on the European flounder to assist with health assessment of estuarine ecosystems in Brittany, France. THE SCIENCE OF THE TOTAL ENVIRONMENT 2023; 878:163195. [PMID: 37003335 DOI: 10.1016/j.scitotenv.2023.163195] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/24/2023] [Revised: 03/21/2023] [Accepted: 03/27/2023] [Indexed: 05/13/2023]
Abstract
This study aimed to develop a multidisciplinary approach to assess the ecological status of six moderate-sized French estuaries. For each estuary, we gathered geographical information, hydrobiological data, chemistry of pollutants and fish biology, including integration of proteomics and transcriptomics data. This integrative study covered the entire hydrological system studied, from the watershed to the estuary, and considered all the anthropogenic factors that can impact this environment. To reach this goal, European flounder (Platichthys flesus) were collected from six estuaries in September, which ensures a minimum residence time of five months within an estuary. Geographical metrics are used to characterize land use in each watershed. The concentrations of nitrite, nitrate, organic pollutants, and trace elements were measured in water, sediments and biota. All of these environmental parameters allowed to set up a typology of estuaries. Classical fish biomarkers, coupled with molecular data from transcriptomics and shotgun proteomics, highlighted the flounder's responses to stressors in its environment. We analysed the protein abundances and gene expression levels in the liver of fish from the different estuaries. We showed clear positive deregulation of proteins associated with xenobiotic detoxification in a system characterized by a large population density and industrial activity, as well as in a predominantly agricultural catchment area (mostly cultures of vegetables and pig breeding) mainly impacted by pesticides. Fish from the latter estuary also displayed strong deregulation of the urea cycle, most probably related to high nitrogen load. Proteomic and transcriptomic data also revealed a deregulation of proteins and genes related to the response to hypoxia, and a probable endocrine disruption in some estuaries. Coupling these data allowed the precise identification of the main stressors interacting within each hydrosystem.
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Affiliation(s)
- Jennifer Laurent
- LEMAR UMR 6539 CNRS/UBO/IRD/Ifremer, IUEM-Université de Bretagne Occidentale, Rue Dumont D'Urville, 29280 Plouzané, France; CEDRE, 715 rue Alain Colas, 29200 Brest, France.
| | - Iwan Le Berre
- LETG-Brest GEOMER, UMR 6554 CNRS, IUEM-Université de Bretagne Occidentale, Rue Dumont D'Urville, 29280 Plouzané, France
| | - Jean Armengaud
- Laboratoire Innovations Technologiques pour la Détection et le Diagnostic (Li2D), Service de Pharmacologie et Immunoanalyse (SPI), CEA, INRAe, F-30207 Bagnols-sur-Cèze, France
| | - Senthilkumar Kailasam
- Canadian Centre for Computational Genomics, McGill University, Montreal, Quebec H3A 0G1, Canada; Department of Human Genetics, McGill University, Montréal, Québec, Canada
| | - Jérôme Couteau
- TOXEM, 12 rue des 4 saisons, 76290 Montivilliers, France
| | - Matthieu Waeles
- LEMAR UMR 6539 CNRS/UBO/IRD/Ifremer, IUEM-Université de Bretagne Occidentale, Rue Dumont D'Urville, 29280 Plouzané, France
| | | | - Jean Laroche
- LEMAR UMR 6539 CNRS/UBO/IRD/Ifremer, IUEM-Université de Bretagne Occidentale, Rue Dumont D'Urville, 29280 Plouzané, France
| | - Vianney Pichereau
- LEMAR UMR 6539 CNRS/UBO/IRD/Ifremer, IUEM-Université de Bretagne Occidentale, Rue Dumont D'Urville, 29280 Plouzané, France.
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12
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Reis-Santos P, Gillanders BM, Sturrock AM, Izzo C, Oxman DS, Lueders-Dumont JA, Hüssy K, Tanner SE, Rogers T, Doubleday ZA, Andrews AH, Trueman C, Brophy D, Thiem JD, Baumgartner LJ, Willmes M, Chung MT, Charapata P, Johnson RC, Trumble S, Heimbrand Y, Limburg KE, Walther BD. Reading the biomineralized book of life: expanding otolith biogeochemical research and applications for fisheries and ecosystem-based management. REVIEWS IN FISH BIOLOGY AND FISHERIES 2023; 33:411-449. [PMID: 0 DOI: 10.1007/s11160-022-09720-z] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/29/2022] [Accepted: 07/15/2022] [Indexed: 05/26/2023]
Abstract
AbstractChemical analysis of calcified structures continues to flourish, as analytical and technological advances enable researchers to tap into trace elements and isotopes taken up in otoliths and other archival tissues at ever greater resolution. Increasingly, these tracers are applied to refine age estimation and interpretation, and to chronicle responses to environmental stressors, linking these to ecological, physiological, and life-history processes. Here, we review emerging approaches and innovative research directions in otolith chemistry, as well as in the chemistry of other archival tissues, outlining their value for fisheries and ecosystem-based management, turning the spotlight on areas where such biomarkers can support decision making. We summarise recent milestones and the challenges that lie ahead to using otoliths and archival tissues as biomarkers, grouped into seven, rapidly expanding and application-oriented research areas that apply chemical analysis in a variety of contexts, namely: (1) supporting fish age estimation; (2) evaluating environmental stress, ecophysiology and individual performance; (3) confirming seafood provenance; (4) resolving connectivity and movement pathways; (5) characterising food webs and trophic interactions; (6) reconstructing reproductive life histories; and (7) tracing stock enhancement efforts. Emerging research directions that apply hard part chemistry to combat seafood fraud, quantify past food webs, as well as to reconcile growth, movement, thermal, metabolic, stress and reproductive life-histories provide opportunities to examine how harvesting and global change impact fish health and fisheries productivity. Ultimately, improved appreciation of the many practical benefits of archival tissue chemistry to fisheries and ecosystem-based management will support their increased implementation into routine monitoring.
Graphical abstract
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13
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Arai K, Castonguay M, Lyubchich V, Secor DH. Integrating machine learning with otolith isoscapes: Reconstructing connectivity of a marine fish over four decades. PLoS One 2023; 18:e0285702. [PMID: 37256866 DOI: 10.1371/journal.pone.0285702] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/18/2023] [Accepted: 04/30/2023] [Indexed: 06/02/2023] Open
Abstract
Stable isotopes are an important tool to uncover animal migration. Geographic natal assignments often require categorizing the spatial domain through a nominal approach, which can introduce bias given the continuous nature of these tracers. Stable isotopes predicted over a spatial gradient (i.e., isoscapes) allow a probabilistic and continuous assignment of origin across space, although applications to marine organisms remain limited. We present a new framework that integrates nominal and continuous assignment approaches by (1) developing a machine-learning multi-model ensemble classifier using Bayesian model averaging (nominal); and (2) integrating nominal predictions with continuous isoscapes to estimate the probability of origin across the spatial domain (continuous). We applied this integrated framework to predict the geographic origin of the Northwest Atlantic mackerel (Scomber scombrus), a migratory pelagic fish comprised of northern and southern components that have distinct spawning sites off Canada (northern contingent) and the US (southern contingent), and seasonally overlap in the US fished regions. The nominal approach based on otolith carbon and oxygen stable isotopes (δ13C/δ18O) yielded high contingent classification accuracy (84.9%). Contingent assignment of unknown-origin samples revealed prevalent, yet highly varied contingent mixing levels (12.5-83.7%) within the US waters over four decades (1975-2019). Nominal predictions were integrated into mackerel-specific otolith oxygen isoscapes developed independently for Canadian and US waters. The combined approach identified geographic nursery hotspots in known spawning sites, but also detected geographic shifts over multi-decadal time scales. This framework can be applied to other marine species to understand migration and connectivity at a high spatial resolution, relevant to management of unit stocks in fisheries and other conservation assessments.
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Affiliation(s)
- Kohma Arai
- Chesapeake Biological Laboratory, University of Maryland Center for Environmental Science, Solomons, MD, United States of America
| | - Martin Castonguay
- Fisheries and Oceans Canada, Institut Maurice-Lamontagne, Mont-Joli, QC, Canada
| | - Vyacheslav Lyubchich
- Chesapeake Biological Laboratory, University of Maryland Center for Environmental Science, Solomons, MD, United States of America
| | - David H Secor
- Chesapeake Biological Laboratory, University of Maryland Center for Environmental Science, Solomons, MD, United States of America
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14
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Ghilardi M, Salter MA, Parravicini V, Ferse SCA, Rixen T, Wild C, Birkicht M, Perry CT, Berry A, Wilson RW, Mouillot D, Bejarano S. Temperature, species identity and morphological traits predict carbonate excretion and mineralogy in tropical reef fishes. Nat Commun 2023; 14:985. [PMID: 36813767 PMCID: PMC9947118 DOI: 10.1038/s41467-023-36617-7] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/13/2022] [Accepted: 02/08/2023] [Indexed: 02/24/2023] Open
Abstract
Anthropogenic pressures are restructuring coral reefs globally. Sound predictions of the expected changes in key reef functions require adequate knowledge of their drivers. Here we investigate the determinants of a poorly-studied yet relevant biogeochemical function sustained by marine bony fishes: the excretion of intestinal carbonates. Compiling carbonate excretion rates and mineralogical composition from 382 individual coral reef fishes (85 species and 35 families), we identify the environmental factors and fish traits that predict them. We find that body mass and relative intestinal length (RIL) are the strongest predictors of carbonate excretion. Larger fishes and those with longer intestines excrete disproportionately less carbonate per unit mass than smaller fishes and those with shorter intestines. The mineralogical composition of excreted carbonates is highly conserved within families, but also controlled by RIL and temperature. These results fundamentally advance our understanding of the role of fishes in inorganic carbon cycling and how this contribution will change as community composition shifts under increasing anthropogenic pressures.
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Affiliation(s)
- Mattia Ghilardi
- Leibniz Centre for Tropical Marine Research (ZMT), Fahrenheitstraße 6, 28359, Bremen, Germany.
- Department of Marine Ecology, Faculty of Biology and Chemistry, University of Bremen, Leobener Straße UFT, 28359, Bremen, Germany.
| | | | - Valeriano Parravicini
- PSL Université Paris: EPHE-UPVD-CNRS, USR3278 CRIOBE, University of Perpignan, 66860, Perpignan, France
- Institut Universitaire de France, Paris, France
| | - Sebastian C A Ferse
- Leibniz Centre for Tropical Marine Research (ZMT), Fahrenheitstraße 6, 28359, Bremen, Germany
- Department of Marine Ecology, Faculty of Biology and Chemistry, University of Bremen, Leobener Straße UFT, 28359, Bremen, Germany
| | - Tim Rixen
- Leibniz Centre for Tropical Marine Research (ZMT), Fahrenheitstraße 6, 28359, Bremen, Germany
| | - Christian Wild
- Department of Marine Ecology, Faculty of Biology and Chemistry, University of Bremen, Leobener Straße UFT, 28359, Bremen, Germany
| | - Matthias Birkicht
- Leibniz Centre for Tropical Marine Research (ZMT), Fahrenheitstraße 6, 28359, Bremen, Germany
| | - Chris T Perry
- Geography, University of Exeter, Exeter, EX4 4RJ, UK
| | - Alex Berry
- Biosciences, University of Exeter, Exeter, EX4 4QD, UK
| | - Rod W Wilson
- Biosciences, University of Exeter, Exeter, EX4 4QD, UK
| | - David Mouillot
- Institut Universitaire de France, Paris, France
- MARBEC, Univ Montpellier, CNRS, Ifremer, IRD, 34095, Montpellier, France
| | - Sonia Bejarano
- Leibniz Centre for Tropical Marine Research (ZMT), Fahrenheitstraße 6, 28359, Bremen, Germany
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15
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Brandl SJ, Lefcheck JS, Bates AE, Rasher DB, Norin T. Can metabolic traits explain animal community assembly and functioning? Biol Rev Camb Philos Soc 2023; 98:1-18. [PMID: 36054431 DOI: 10.1111/brv.12892] [Citation(s) in RCA: 7] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/07/2021] [Revised: 07/28/2022] [Accepted: 08/01/2022] [Indexed: 01/12/2023]
Abstract
All animals on Earth compete for free energy, which is acquired, assimilated, and ultimately allocated to growth and reproduction. Competition is strongest within communities of sympatric, ecologically similar animals of roughly equal size (i.e. horizontal communities), which are often the focus of traditional community ecology. The replacement of taxonomic identities with functional traits has improved our ability to decipher the ecological dynamics that govern the assembly and functioning of animal communities. Yet, the use of low-resolution and taxonomically idiosyncratic traits in animals may have hampered progress to date. An animal's metabolic rate (MR) determines the costs of basic organismal processes and activities, thus linking major aspects of the multifaceted constructs of ecological niches (where, when, and how energy is obtained) and ecological fitness (how much energy is accumulated and passed on to future generations). We review evidence from organismal physiology to large-scale analyses across the tree of life to propose that MR gives rise to a group of meaningful functional traits - resting metabolic rate (RMR), maximum metabolic rate (MMR), and aerobic scope (AS) - that may permit an improved quantification of the energetic basis of species coexistence and, ultimately, the assembly and functioning of animal communities. Specifically, metabolic traits integrate across a variety of typical trait proxies for energy acquisition and allocation in animals (e.g. body size, diet, mobility, life history, habitat use), to yield a smaller suite of continuous quantities that: (1) can be precisely measured for individuals in a standardized fashion; and (2) apply to all animals regardless of their body plan, habitat, or taxonomic affiliation. While integrating metabolic traits into animal community ecology is neither a panacea to disentangling the nuanced effects of biological differences on animal community structure and functioning, nor without challenges, a small number of studies across different taxa suggest that MR may serve as a useful proxy for the energetic basis of competition in animals. Thus, the application of MR traits for animal communities can lead to a more general understanding of community assembly and functioning, enhance our ability to trace eco-evolutionary dynamics from genotypes to phenotypes (and vice versa), and help predict the responses of animal communities to environmental change. While trait-based ecology has improved our knowledge of animal communities to date, a more explicit energetic lens via the integration of metabolic traits may further strengthen the existing framework.
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Affiliation(s)
- Simon J Brandl
- Department of Marine Science, The University of Texas at Austin, Marine Science Institute, Port Aransas, TX, 78373, USA
| | - Jonathan S Lefcheck
- Tennenbaum Marine Observatories Network and MarineGEO Program, Smithsonian Environmental Research Center, Edgewater, MD, 21037, USA
| | - Amanda E Bates
- Biology Department, University of Victoria, 3800 Finnerty Road, Victoria, BC, V8P 5C2, Canada
| | - Douglas B Rasher
- Bigelow Laboratory for Ocean Sciences, East Boothbay, ME, 04544, USA
| | - Tommy Norin
- DTU Aqua: National Institute of Aquatic Resources, Technical University of Denmark, 2800, Kongens Lyngby, Denmark
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16
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Isotope systematics of subfossil, historical, and modern Nautilus macromphalus from New Caledonia. PLoS One 2022; 17:e0277666. [PMID: 36576896 PMCID: PMC9797077 DOI: 10.1371/journal.pone.0277666] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/29/2021] [Accepted: 11/01/2022] [Indexed: 12/29/2022] Open
Abstract
Cephalopod carbonate geochemistry underpins studies ranging from Phanerozoic, global-scale change to outcrop-scale paleoecological reconstructions. Interpreting these data hinges on assumed similarity to model organisms, such as Nautilus, and generalization from other molluscan biomineralization processes. Aquarium rearing and capture of wild Nautilus suggest shell carbonate precipitates quickly (35 μm/day) in oxygen isotope equilibrium with seawater. Other components of Nautilus shell chemistry are less well-studied but have potential to serve as proxies for paleobiology and paleoceanography. To calibrate the geochemical response of cephalopod δ15Norg, δ13Corg, δ13Ccarb, δ18Ocarb, and δ44/40Cacarb to modern anthropogenic environmental change, we analyzed modern, historical, and subfossil Nautilus macromphalus from New Caledonia. Samples span initial human habitation, colonialization, and industrial pCO2 increase. This sampling strategy is advantageous because it avoids the shock response that can affect geochemical change in aquarium experiments. Given the range of living depths and more complex ecology of Nautilus, however, some anthropogenic signals, such as ocean acidification, may not have propagated to their living depths. Our data suggest some environmental changes are more easily preserved than others given variability in cephalopod average living depth. Calculation of the percent respired carbon incorporated into the shell using δ13Corg, δ13Ccarb, and Suess-effect corrected δ13CDIC suggests an increase in the last 130 years that may have been caused by increasing carbon dioxide concentration or decreasing oxygen concentration at the depths these individuals inhabited. This pattern is consistent with increasing atmospheric CO2 and/or eutrophication offshore of New Caledonia. We find that δ44/40Ca remains stable across the last 130 years. The subfossil shell from a cenote may exhibit early δ44/40Ca diagenesis. Questions remain about the proportion of dietary vs ambient seawater calcium incorporation into the Nautilus shell. Values of δ15N do not indicate trophic level change in the last 130 years, and the subfossil shell may show diagenetic alteration of δ15N toward lower values. Future work using historical collections of Sepia and Spirula may provide additional calibration of fossil cephalopod geochemistry.
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17
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McHuron EA, Adamczak S, Arnould JPY, Ashe E, Booth C, Bowen WD, Christiansen F, Chudzinska M, Costa DP, Fahlman A, Farmer NA, Fortune SME, Gallagher CA, Keen KA, Madsen PT, McMahon CR, Nabe-Nielsen J, Noren DP, Noren SR, Pirotta E, Rosen DAS, Speakman CN, Villegas-Amtmann S, Williams R. Key questions in marine mammal bioenergetics. CONSERVATION PHYSIOLOGY 2022; 10:coac055. [PMID: 35949259 PMCID: PMC9358695 DOI: 10.1093/conphys/coac055] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 04/12/2022] [Revised: 06/28/2022] [Accepted: 07/20/2022] [Indexed: 06/15/2023]
Abstract
Bioenergetic approaches are increasingly used to understand how marine mammal populations could be affected by a changing and disturbed aquatic environment. There remain considerable gaps in our knowledge of marine mammal bioenergetics, which hinder the application of bioenergetic studies to inform policy decisions. We conducted a priority-setting exercise to identify high-priority unanswered questions in marine mammal bioenergetics, with an emphasis on questions relevant to conservation and management. Electronic communication and a virtual workshop were used to solicit and collate potential research questions from the marine mammal bioenergetic community. From a final list of 39 questions, 11 were identified as 'key' questions because they received votes from at least 50% of survey participants. Key questions included those related to energy intake (prey landscapes, exposure to human activities) and expenditure (field metabolic rate, exposure to human activities, lactation, time-activity budgets), energy allocation priorities, metrics of body condition and relationships with survival and reproductive success and extrapolation of data from one species to another. Existing tools to address key questions include labelled water, animal-borne sensors, mark-resight data from long-term research programs, environmental DNA and unmanned vehicles. Further validation of existing approaches and development of new methodologies are needed to comprehensively address some key questions, particularly for cetaceans. The identification of these key questions can provide a guiding framework to set research priorities, which ultimately may yield more accurate information to inform policies and better conserve marine mammal populations.
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Affiliation(s)
- Elizabeth A McHuron
- Corresponding author: Cooperative Institute for Climate, Ocean, and Ecosystem Studies, University of Washington, WA, 98195, USA.
| | - Stephanie Adamczak
- Ecology and Evolutionary Biology Department, University of California Santa Cruz, Santa Cruz, CA, 95064, USA
| | - John P Y Arnould
- School of Life and Environmental Sciences, Deakin University, Burwood, VIC 3125, Australia
| | - Erin Ashe
- Oceans Initiative, Seattle, WA, 98102, USA
| | - Cormac Booth
- SMRU Consulting, Scottish Oceans Institute, University of St. Andrews, St. Andrews KY16 8LB, UK
| | - W Don Bowen
- Biology Department, Dalhousie University, Halifax, NS B3H 4R2, Canada
- Population Ecology Division, Bedford Institute of Oceanography, Dartmouth, NS B2Y 4A2, Canada
| | - Fredrik Christiansen
- Aarhus Institute of Advanced Studies, 8000 Aarhus C, Denmark
- Zoophysiology, Department of Biology, Aarhus University, 8000 Aarhus C, Denmark
- Center for Sustainable Aquatic Ecosystems, Harry Butler Institute, Murdoch, Murdoch University, WA 6150, Australia
| | - Magda Chudzinska
- SMRU Consulting, Scottish Oceans Institute, University of St. Andrews, St. Andrews KY16 8LB, UK
- Sea Mammal Research Unit, Scottish Oceans Institute, University of St. Andrews, St. Andrews KY16 9XL, UK
| | - Daniel P Costa
- Ecology and Evolutionary Biology Department, University of California Santa Cruz, Santa Cruz, CA, 95064, USA
| | - Andreas Fahlman
- Fundación Oceanogràfic de la Comunitat Valenciana, 46005 Valencia, Spain
- Kolmården Wildlife Park, 618 92 Kolmården, Sweden
| | - Nicholas A Farmer
- NOAA/National Marine Fisheries Service, Southeast Regional Office, St. Petersburg, FL, 33701, USA
| | - Sarah M E Fortune
- Department of Oceanography, Dalhousie University, Halifax, NS B3H 4R2, Canada
| | - Cara A Gallagher
- Plant Ecology and Nature Conservation, University of Potsdam, 14476 Potsdam, Germany
| | - Kelly A Keen
- Ecology and Evolutionary Biology Department, University of California Santa Cruz, Santa Cruz, CA, 95064, USA
| | - Peter T Madsen
- Zoophysiology, Department of Biology, Aarhus University, 8000 Aarhus C, Denmark
| | - Clive R McMahon
- IMOS Animal Tagging, Sydney Institute of Marine Science, Mosman, NSW 2088, Australia
| | | | - Dawn P Noren
- Conservation Biology Division, Northwest Fisheries Science Center, National Marine Fisheries Service, National Oceanic and Atmospheric Administration, Seattle, WA, 98112, USA
| | - Shawn R Noren
- Institute of Marine Science, University of California Santa Cruz, Santa Cruz, CA, 95060, USA
| | - Enrico Pirotta
- Centre for Research into Ecological and Environmental Modelling, University of St. Andrews, St. Andrews KY16 9LZ, UK
| | - David A S Rosen
- Institute for Oceans and Fisheries, University of British Columbia, Vancouver, BC V6T 1ZA, Canada
| | - Cassie N Speakman
- School of Life and Environmental Sciences, Deakin University, Burwood, VIC 3125, Australia
| | - Stella Villegas-Amtmann
- Ecology and Evolutionary Biology Department, University of California Santa Cruz, Santa Cruz, CA, 95064, USA
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18
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Wang YC, Chang YJ, Wang PL, Shiao JC. Evaluation of cooking effects on otolith stable carbon and oxygen isotope values of teleostean fish Pomadasys kaakan (Cuvier, 1830). RAPID COMMUNICATIONS IN MASS SPECTROMETRY : RCM 2022; 36:e9233. [PMID: 34877723 DOI: 10.1002/rcm.9233] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/06/2021] [Revised: 12/02/2021] [Accepted: 12/03/2021] [Indexed: 06/13/2023]
Abstract
RATIONALE For years, archaeologists, climatologists, and ecologists have used stable oxygen isotope values (δ13 C, δ18 O) in fish otoliths from archaeological sites to reconstruct the habitats, paleo-temperature, and seasonality of the fish captures. Otoliths from archaeological sites might have been heated when ancient people cooked the fish for food. Therefore, there are debates as to whether the cooking behaviors would cause further isotopic fractionations of the carbonate in the otoliths. METHODS In this study, we have evaluated the effects of the cooking methods on the otolith δ13 C and δ18 O values by comparing the otoliths of the javelin grunter (Pomadasys kaakan) from the same individuals, with the left otoliths taken out before the different cooking processes. Otolith sections of the fish were then made and several subsamples were milled along the microstructures visible in the otolith pairs, mostly annual check rings, followed by the stable isotope analyses. RESULTS There were no morphological changes between the cooked and uncooked otoliths. The δ13 C and δ18 O values were highly consistent for the otolith subsamples between the cooked and uncooked pairs, suggesting none or trivial effects of the cooking processes on the isotopic values of the otoliths. In addition, some javelin grunters showed lower δ13 C (-5‰ to -6‰) and δ18 O (-4‰ to -5‰) values deposited in the wide translucent zone of the otoliths, suggesting seasonal migration of the fish to estuaries during the summer. CONCLUSIONS This study suggests that cooking processes do not change otolith stable isotopic compositions and will therefore allow for future research to use the otolith δ13 C and δ18 O values to better understand the life history and used habitats of the preserved fish remains in the middens.
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Affiliation(s)
- Yen-Chun Wang
- Cotsen Institute of Archaeology, University of California, Los Angeles, CA, USA
| | - Yi-Jay Chang
- Institute of Oceanography, National Taiwan University, Taipei, Taiwan
| | - Pei-Ling Wang
- Institute of Oceanography, National Taiwan University, Taipei, Taiwan
| | - Jen-Chieh Shiao
- Institute of Oceanography, National Taiwan University, Taipei, Taiwan
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Paoletti S, Bekaert K, Barbut L, Lacroix G, Volckaert FAM, Hostens K. Validating a biophysical dispersal model with the early life-history traits of common sole (Solea solea L.). PLoS One 2021; 16:e0257709. [PMID: 34551018 PMCID: PMC8457496 DOI: 10.1371/journal.pone.0257709] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/06/2021] [Accepted: 09/09/2021] [Indexed: 11/18/2022] Open
Abstract
Larval dispersal and juvenile survival are crucial in determining variation in recruitment, stock size and adult distribution of commercially important fish. This study investigates the dispersal of early-life stages of common sole (Solea solea L.) in the southern North Sea, both empirically and through modeling. Age at different life-history events of juvenile flatfish sampled along the coasts of Belgium, the Netherlands and the United Kingdom in 2013, 2014 and 2016, was determined through the counting of daily growth rings in the otoliths. Juveniles captured between August and October were estimated to be on average 140 days old with an average pelagic larval duration of 34 days. The hatching period was estimated between early April and mid-May followed by arrival and settlement in the nurseries between May and mid-June. Growth rates were higher off the Belgian coast than in the other nursery areas, especially in 2013, possibly due to a post-settlement differentiation. Empirical pelagic larval duration and settlement distributions were compared with the Larvae&Co larval dispersal model, which combines local hydrodynamics in the North Sea with sole larval behavior. Yearly predicted and observed settlement matched partially, but the model estimated a longer pelagic phase. The observations fitted even better with the modelled average (1995-2015) distribution curves. Aberrant results for the small juvenile sole sampled along the UK coast in March 2016, led to the hypothesis of a winter disruption in the deposition of daily growth rings, potentially related to starvation and lower food availability. The similarities between measured and modelled distribution curves cross-validated both types of estimations and accredited daily ageing of juveniles as a useful method to calibrate biophysical models and to understand early-life history of fish, both important tools in support of efficient fisheries management strategies.
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Affiliation(s)
- Silvia Paoletti
- Flanders Research Institute for Agriculture, Fisheries and Food (ILVO), Marine Research, Ostend, Belgium
- Royal Belgian Institute of Natural Sciences (RBINS), Brussels, Belgium
| | - Karen Bekaert
- Flanders Research Institute for Agriculture, Fisheries and Food (ILVO), Marine Research, Ostend, Belgium
| | - Léo Barbut
- Royal Belgian Institute of Natural Sciences (RBINS), Brussels, Belgium
- Laboratory of Biodiversity and Evolutionary Genomics, KU Leuven, Leuven, Belgium
| | - Geneviève Lacroix
- Royal Belgian Institute of Natural Sciences (RBINS), Brussels, Belgium
| | | | - Kris Hostens
- Flanders Research Institute for Agriculture, Fisheries and Food (ILVO), Marine Research, Ostend, Belgium
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Chung M, Chen C, Shiao J, Shirai K, Wang C. Metabolic proxy for cephalopods: Stable carbon isotope values recorded in different biogenic carbonates. Methods Ecol Evol 2021. [DOI: 10.1111/2041-210x.13630] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]
Affiliation(s)
- Ming‐Tsung Chung
- Atmosphere and Ocean Research Institute The University of Tokyo Kashiwa Japan
| | - Ching‐Yi Chen
- Department of Environmental Biology and Fisheries Science National Taiwan Ocean University Keelung Taiwan
| | - Jen‐Chieh Shiao
- Institute of Oceanography National Taiwan University Taipei Taiwan
| | - Kotaro Shirai
- Atmosphere and Ocean Research Institute The University of Tokyo Kashiwa Japan
| | - Chia‐Hui Wang
- Department of Environmental Biology and Fisheries Science National Taiwan Ocean University Keelung Taiwan
- Center of Excellence for the Oceans National Taiwan Ocean University Keelung Taiwan
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21
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Lennox RJ, Westrelin S, Souza AT, Šmejkal M, Říha M, Prchalová M, Nathan R, Koeck B, Killen S, Jarić I, Gjelland K, Hollins J, Hellstrom G, Hansen H, Cooke SJ, Boukal D, Brooks JL, Brodin T, Baktoft H, Adam T, Arlinghaus R. A role for lakes in revealing the nature of animal movement using high dimensional telemetry systems. MOVEMENT ECOLOGY 2021; 9:40. [PMID: 34321114 PMCID: PMC8320048 DOI: 10.1186/s40462-021-00244-y] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/20/2020] [Accepted: 02/11/2021] [Indexed: 05/13/2023]
Abstract
Movement ecology is increasingly relying on experimental approaches and hypothesis testing to reveal how, when, where, why, and which animals move. Movement of megafauna is inherently interesting but many of the fundamental questions of movement ecology can be efficiently tested in study systems with high degrees of control. Lakes can be seen as microcosms for studying ecological processes and the use of high-resolution positioning systems to triangulate exact coordinates of fish, along with sensors that relay information about depth, temperature, acceleration, predation, and more, can be used to answer some of movement ecology's most pressing questions. We describe how key questions in animal movement have been approached and how experiments can be designed to gather information about movement processes to answer questions about the physiological, genetic, and environmental drivers of movement using lakes. We submit that whole lake telemetry studies have a key role to play not only in movement ecology but more broadly in biology as key scientific arenas for knowledge advancement. New hardware for tracking aquatic animals and statistical tools for understanding the processes underlying detection data will continue to advance the potential for revealing the paradigms that govern movement and biological phenomena not just within lakes but in other realms spanning lands and oceans.
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Affiliation(s)
- Robert J Lennox
- Laboratory for Freshwater Ecology and Inland Fisheries (LFI) at NORCE Norwegian Research Centre, Nygårdsporten 112, 5008, Bergen, Norway.
| | - Samuel Westrelin
- INRAE, Aix Marseille Univ, Pôle R&D ECLA, RECOVER, 3275 Route de Cézanne - CS 40061, 13182 Cedex 5, Aix-en-Provence, France
| | - Allan T Souza
- Institute of Hydrobiology, Biology Centre of the Czech Academy of Sciences, České Budějovice, Czech Republic
| | - Marek Šmejkal
- Institute of Hydrobiology, Biology Centre of the Czech Academy of Sciences, České Budějovice, Czech Republic
| | - Milan Říha
- Institute of Hydrobiology, Biology Centre of the Czech Academy of Sciences, České Budějovice, Czech Republic
| | - Marie Prchalová
- Institute of Hydrobiology, Biology Centre of the Czech Academy of Sciences, České Budějovice, Czech Republic
| | - Ran Nathan
- Movement Ecology Lab, Department of Ecology, Evolution, and Behavior, Alexander Silberman Institute of Life Sciences, The Hebrew University of Jerusalem, 102 Berman Bldg, Edmond J. Safra Campus at Givat Ram, 91904, Jerusalem, Israel
| | - Barbara Koeck
- Institute of Biodiversity, Animal Health and Comparative Medicine, College of Medical, Veterinary and Life Sciences, University of Glasgow, Graham Kerr Building, Glasgow, G12 8QQ, UK
| | - Shaun Killen
- Institute of Biodiversity, Animal Health and Comparative Medicine, College of Medical, Veterinary and Life Sciences, University of Glasgow, Graham Kerr Building, Glasgow, G12 8QQ, UK
| | - Ivan Jarić
- Institute of Hydrobiology, Biology Centre of the Czech Academy of Sciences, České Budějovice, Czech Republic
- Faculty of Science, Department of Ecosystem Biology, University of South Bohemia, České Budějovice, Czech Republic
| | - Karl Gjelland
- Norwegian Institute of Nature Research, Tromsø, Norway
| | - Jack Hollins
- Institute of Biodiversity, Animal Health and Comparative Medicine, College of Medical, Veterinary and Life Sciences, University of Glasgow, Graham Kerr Building, Glasgow, G12 8QQ, UK
- University of Windsor, Windsor, ON, Canada
| | - Gustav Hellstrom
- Department of Wildlife, Fish, and Environmental Studies, Swedish University of Agricultural Sciences, Umeå, Sweden
| | - Henry Hansen
- Karlstads University, Universitetsgatan 2, 651 88, Karlstad, Sweden
- Department of Biology and Ecology of Fishes, Leibniz Institute of Freshwater Ecology and Inland Fisheries, Bergen, Germany
| | - Steven J Cooke
- Fish Ecology and Conservation Physiology Laboratory, Department of Biology, Carleton University, Ottawa, ON, Canada
| | - David Boukal
- Faculty of Science, Department of Ecosystem Biology, University of South Bohemia, České Budějovice, Czech Republic
- Institute of Entomology, Biology Centre of the Czech Academy of Sciences, České Budějovice, Czech Republic
| | - Jill L Brooks
- Fish Ecology and Conservation Physiology Laboratory, Department of Biology, Carleton University, Ottawa, ON, Canada
| | - Tomas Brodin
- Department of Wildlife, Fish, and Environmental Studies, Swedish University of Agricultural Sciences, Umeå, Sweden
| | - Henrik Baktoft
- Technical University of Denmark, Vejlsøvej 39, Building Silkeborg-039, 8600, Silkeborg, Denmark
| | - Timo Adam
- Bielefeld University, Universitätsstraße 25, 33615, Bielefeld, Germany
| | - Robert Arlinghaus
- Department of Biology and Ecology of Fishes, Leibniz Institute of Freshwater Ecology and Inland Fisheries, Bergen, Germany
- Division of Integrative Fisheries Management, Humboldt-Universität zu Berlin, Bergen, Germany
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22
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Smoliński S, Denechaud C, von Leesen G, Geffen AJ, Grønkjær P, Godiksen JA, Campana SE. Differences in metabolic rate between two Atlantic cod (Gadus morhua) populations estimated with carbon isotopic composition in otoliths. PLoS One 2021; 16:e0248711. [PMID: 33793572 PMCID: PMC8016290 DOI: 10.1371/journal.pone.0248711] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/26/2020] [Accepted: 03/03/2021] [Indexed: 11/18/2022] Open
Abstract
The isotopic composition of inorganic carbon in otoliths (δ13Coto) can be a useful tracer of metabolic rates and a method to study ecophysiology in wild fish. We evaluated environmental and physiological sources of δ13Coto variation in Icelandic and Northeast Arctic (NEA) cod (Gadus morhua) over the years 1914-2013. Individual annual growth increments of otoliths formed at age 3 and 8 were micromilled and measured by isotope-ratio mass spectrometry. Simultaneously, all annual increment widths of the otoliths were measured providing a proxy of fish somatic growth. We hypothesized that changes in the physiological state of the organism, reflected by the isotopic composition of otoliths, can affect the growth rate. Using univariate and multivariate mixed-effects models we estimated conditional correlations between carbon isotopic composition and growth of fish at different levels (within individuals, between individuals, and between years), controlling for intrinsic and extrinsic effects on both otolith measurements. δ13Coto was correlated with growth within individuals and between years, which was attributed to the intrinsic effects (fish age or total length). There was no significant correlation between δ13Coto and growth between individuals, which suggests that caution is needed when interpreting δ13Coto signals. We found a significant decrease in δ13Coto through the century which was explained by the oceanic Suess effect-admixture of isotopically light carbon from fossil fuel. We calculated the proportion of the respired carbon in otolith carbonate (Cresp) using carbon isotopic composition in diet and dissolved inorganic carbon of the seawater. This approach allowed us to correct the values for each stock in relation to these two environmental baselines. Cresp was on average 0.275 and 0.295 in Icelandic and NEA stock, respectively. Our results provide an insight into the physiological basis for differences in growth characteristics between these two cod stocks, and how that may vary over time.
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Affiliation(s)
- Szymon Smoliński
- Institute of Marine Research, Nordnes, Bergen, Norway
- Department of Fisheries Resources, National Marine Fisheries Research Institute, Gdynia, Poland
| | - Côme Denechaud
- Institute of Marine Research, Nordnes, Bergen, Norway
- Department of Biological Sciences, University of Bergen, Bergen, Norway
| | - Gotje von Leesen
- Faculty of Life and Environmental Sciences, University of Iceland, Reykjavik, Iceland
| | - Audrey J. Geffen
- Institute of Marine Research, Nordnes, Bergen, Norway
- Department of Biological Sciences, University of Bergen, Bergen, Norway
| | - Peter Grønkjær
- Aquatic Biology, Department of Bioscience, Aarhus University, Aarhus, Denmark
| | | | - Steven E. Campana
- Faculty of Life and Environmental Sciences, University of Iceland, Reykjavik, Iceland
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23
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Arai K, Castonguay M, Secor DH. Multi-decadal trends in contingent mixing of Atlantic mackerel (Scomber scombrus) in the Northwest Atlantic from otolith stable isotopes. Sci Rep 2021; 11:6667. [PMID: 33758255 PMCID: PMC7988008 DOI: 10.1038/s41598-021-86116-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/11/2020] [Accepted: 03/10/2021] [Indexed: 11/09/2022] Open
Abstract
The Atlantic mackerel (Scomber scombrus) in the Northwest Atlantic is comprised of northern and southern components that have distinct spawning sites off Canada (northern contingent) and the US (southern contingent), and seasonally overlap in US fished regions. Thus, assessment and management of this population can be sensitive to levels of mixing between contingents, which remain unknown. Multi-decadal trends in contingent mixing levels within the US fisheries region were assessed, and the contingent composition across seasons, locations, ages, and size classes were characterized using archived otoliths and developing a classification baseline based on juvenile otolith carbon and oxygen stable isotopes (δ13C/δ18O values). Classification of age ≥ 2 adults demonstrated that northern contingent mixing was prevalent within the US continental shelf waters during the past 2 decades (2000–2019), providing an important seasonal subsidy to the US winter fishery despite substantial depletion in spawning stock biomass of the dominant northern contingent. While the majority of older fish were of the northern contingent during the early 2000s, the southern contingent contribution increased with age/size class during the recent period (2013–2019). Spatial mixing was most prevalent during February and March when the northern contingent occurred as far south as the Delmarva Peninsula, but were mostly absent from US waters in May. A positive relationship (albeit not significant; r = 0.60, p = 0.07) occurred between northern contingent mixing and US fisheries landings, which could imply that higher contingent mixing levels might be associated with greater landings for the US winter mackerel fishery. The yield of the Northwest Atlantic mackerel depends upon the status of the northern contingent, with the southern contingent possibly more prone to depletion. Spatially explicit stock assessment models are recommended to conserve both productivity and stability in this two-component population.
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Affiliation(s)
- Kohma Arai
- Chesapeake Biological Laboratory, University of Maryland Center for Environmental Science, Solomons, MD, 20688, USA.
| | - Martin Castonguay
- Fisheries and Oceans Canada, Institut Maurice-Lamontagne, Mont-Joli, QC, G5H 3Z4, Canada
| | - David H Secor
- Chesapeake Biological Laboratory, University of Maryland Center for Environmental Science, Solomons, MD, 20688, USA
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24
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Chung M, Jørgensen KM, Trueman CN, Knutsen H, Jorde PE, Grønkjær P. First measurements of field metabolic rate in wild juvenile fishes show strong thermal sensitivity but variations between sympatric ecotypes. OIKOS 2020. [DOI: 10.1111/oik.07647] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]
Affiliation(s)
- Ming‐Tsung Chung
- Dept of Biology, Aarhus Univ. Aarhus Denmark
- Atmosphere and Ocean Research Inst., The Univ. of Tokyo Tokyo Japan
| | | | | | - Halvor Knutsen
- Inst. of Marine Research, Flødevigen Norway
- Center for Coastal Research, Univ. of Agder Kristiansand Norway
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25
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Deutsch C, Penn JL, Seibel B. Metabolic trait diversity shapes marine biogeography. Nature 2020; 585:557-562. [PMID: 32939093 DOI: 10.1038/s41586-020-2721-y] [Citation(s) in RCA: 67] [Impact Index Per Article: 16.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/31/2019] [Accepted: 06/18/2020] [Indexed: 11/09/2022]
Abstract
Climate and physiology shape biogeography, yet the range limits of species can rarely be ascribed to the quantitative traits of organisms1-3. Here we evaluate whether the geographical range boundaries of species coincide with ecophysiological limits to acquisition of aerobic energy4 for a global cross-section of the biodiversity of marine animals. We observe a tight correlation between the metabolic rate and the efficacy of oxygen supply, and between the temperature sensitivities of these traits, which suggests that marine animals are under strong selection for the tolerance of low O2 (hypoxia)5. The breadth of the resulting physiological tolerances of marine animals predicts a variety of geographical niches-from the tropics to high latitudes and from shallow to deep water-which better align with species distributions than do models based on either temperature or oxygen alone. For all studied species, thermal and hypoxic limits are substantially reduced by the energetic demands of ecological activity, a trait that varies similarly among marine and terrestrial taxa. Active temperature-dependent hypoxia thus links the biogeography of diverse marine species to fundamental energetic requirements that are shared across the animal kingdom.
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Affiliation(s)
- Curtis Deutsch
- School of Oceanography, University of Washington, Seattle, WA, USA. .,Department of Biology, University of Washington, Seattle, WA, USA.
| | - Justin L Penn
- School of Oceanography, University of Washington, Seattle, WA, USA
| | - Brad Seibel
- College of Marine Science, University of South Florida, St Petersburg, FL, USA
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26
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Heimbrand Y, Limburg KE, Hüssy K, Casini M, Sjöberg R, Palmén Bratt AM, Levinsky SE, Karpushevskaia A, Radtke K, Öhlund J. Seeking the true time: Exploring otolith chemistry as an age-determination tool. JOURNAL OF FISH BIOLOGY 2020; 97:552-565. [PMID: 32515105 DOI: 10.1111/jfb.14422] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/06/2020] [Revised: 02/26/2020] [Accepted: 06/05/2020] [Indexed: 06/11/2023]
Abstract
Fish otoliths' chronometric properties make them useful for age and growth rate estimation in fisheries management. For the Eastern Baltic Sea cod stock (Gadus morhua), unclear seasonal growth zones in otoliths have resulted in unreliable age and growth information. Here, a new age estimation method based on seasonal patterns in trace elemental otolith incorporation was tested for the first time and compared with the traditional method of visually counting growth zones, using otoliths from the Baltic and North seas. Various trace elemental ratios, linked to fish metabolic activity (higher in summer) or external environment (migration to colder, deeper habitats with higher salinity in winter), were tested for age estimation based on assessing their seasonal variations in concentration. Mg:Ca and P:Ca, both proxies for growth and metabolic activity, showed greatest seasonality and therefore have the best potential to be used as chemical clocks. Otolith image readability was significantly lower in the Baltic than in the North Sea. The chemical (novel) method had an overall greater precision and percentage agreement among readers (11.2%, 74.0%) than the visual (traditional) method (23.1%, 51.0%). Visual readers generally selected more highly contrasting zones as annuli whereas the chemical readers identified brighter regions within the first two annuli and darker zones thereafter. Visual estimates produced significantly higher, more variable ages than did the chemical ones. Based on the analyses in our study, we suggest that otolith microchemistry is a promising alternative ageing method for fish populations difficult to age, such as the Eastern Baltic cod.
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Affiliation(s)
- Yvette Heimbrand
- Department of Aquatic Resources, Swedish University of Agricultural Sciences, Lysekil, Sweden
| | - Karin E Limburg
- Department of Aquatic Resources, Swedish University of Agricultural Sciences, Lysekil, Sweden
- College of Environmental Science and Forestry, State University of New York, Syracuse, New York, USA
| | - Karin Hüssy
- Department of Biological, Geological and Environmental Sciences, University of Bologna, Bologna, Italy
| | - Michele Casini
- Department of Aquatic Resources, Swedish University of Agricultural Sciences, Lysekil, Sweden
- Department of Biological, Geological and Environmental Sciences, University of Bologna, Bologna, Italy
| | - Rajlie Sjöberg
- Department of Aquatic Resources, Swedish University of Agricultural Sciences, Lysekil, Sweden
| | - Anne-Marie Palmén Bratt
- Department of Aquatic Resources, Swedish University of Agricultural Sciences, Lysekil, Sweden
| | - Svend-Erik Levinsky
- National Institute of Aquatic Resources, Technical University of Denmark, Kongens Lyngby, Denmark
| | - Anastasia Karpushevskaia
- Russian Federal Research Institute of Fisheries and Oceanography, Atlantic branch of the Federal State Budget Scientific Institution, Kaliningrad, Russia
| | | | - Jill Öhlund
- Department of Environmental Research and Monitoring, Swedish Museum of Natural History, Stockholm, Sweden
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27
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Schiettekatte NMD, Barneche DR, Villéger S, Allgeier JE, Burkepile DE, Brandl SJ, Casey JM, Mercière A, Munsterman KS, Morat F, Parravicini V. Nutrient limitation, bioenergetics and stoichiometry: A new model to predict elemental fluxes mediated by fishes. Funct Ecol 2020. [DOI: 10.1111/1365-2435.13618] [Citation(s) in RCA: 16] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/15/2023]
Affiliation(s)
- Nina M. D. Schiettekatte
- PSL Université Paris: EPHE‐UPVD‐CNRS USR 3278 CRIOBE Université de Perpignan Perpignan France
- Laboratoire d'Excellence “CORAIL” Perpignan France
| | - Diego R. Barneche
- Australian Institute of Marine Science Crawley WA Australia
- Oceans InstituteThe University of Western Australia Crawley WA Australia
- College of Life and Environmental Sciences University of Exeter Penryn UK
| | | | - Jacob E. Allgeier
- Department of Ecology and Evolutionary Biology University of Michigan Ann Arbor MI USA
| | - Deron E. Burkepile
- Department of Ecology, Evolution, and Marine Biology University of California Santa Barbara CA USA
- Marine Science Institute University of California Santa Barbara CA USA
| | - Simon J. Brandl
- Department of Biological Sciences Simon Fraser University Burnaby BC Canada
| | - Jordan M. Casey
- PSL Université Paris: EPHE‐UPVD‐CNRS USR 3278 CRIOBE Université de Perpignan Perpignan France
- Laboratoire d'Excellence “CORAIL” Perpignan France
| | - Alexandre Mercière
- PSL Université Paris: EPHE‐UPVD‐CNRS USR 3278 CRIOBE Université de Perpignan Perpignan France
- Laboratoire d'Excellence “CORAIL” Perpignan France
| | - Katrina S. Munsterman
- Department of Ecology and Evolutionary Biology University of Michigan Ann Arbor MI USA
| | - Fabien Morat
- PSL Université Paris: EPHE‐UPVD‐CNRS USR 3278 CRIOBE Université de Perpignan Perpignan France
- Laboratoire d'Excellence “CORAIL” Perpignan France
| | - Valeriano Parravicini
- PSL Université Paris: EPHE‐UPVD‐CNRS USR 3278 CRIOBE Université de Perpignan Perpignan France
- Laboratoire d'Excellence “CORAIL” Perpignan France
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28
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Martino JC, Doubleday ZA, Chung MT, Gillanders BM. Experimental support towards a metabolic proxy in fish using otolith carbon isotopes. ACTA ACUST UNITED AC 2020; 223:223/6/jeb217091. [PMID: 32220900 DOI: 10.1242/jeb.217091] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/21/2019] [Accepted: 02/18/2020] [Indexed: 01/15/2023]
Abstract
Metabolic rate underpins our understanding of how species survive, reproduce and interact with their environment, but can be difficult to measure in wild fish. Stable carbon isotopes (δ13C) in ear stones (otoliths) of fish may reflect lifetime metabolic signatures but experimental validation is required to advance our understanding of the relationship. To this end, we reared juvenile Australasian snapper (Chrysophrys auratus), an iconic fishery species, at different temperatures and used intermittent-flow respirometry to calculate standard metabolic rate (SMR), maximum metabolic rate (MMR) and absolute aerobic scope (AAS). Subsequently, we analysed δ13C and oxygen isotopes (δ18O) in otoliths using isotope-ratio mass spectrometry. We found that under increasing temperatures, δ13C and δ18O significantly decreased, while SMR and MMR significantly increased. Negative logarithmic relationships were found between δ13C in otoliths and both SMR and MMR, while exponential decay curves were observed between proportions of metabolically sourced carbon in otoliths (M oto) and both measured and theoretical SMR. We show that basal energy for subsistence living and activity metabolism, both core components of field metabolic rates, contribute towards incorporation of δ13C into otoliths and support the use of δ13C as a metabolic proxy in field settings. The functional shapes of the logarithmic and exponential decay curves indicated that physiological thresholds regulate relationships between δ13C and metabolic rates due to upper thresholds of M oto Here, we present quantitative experimental evidence to support the development of an otolith-based metabolic proxy, which could be a powerful tool in reconstructing lifetime biological trends in wild fish.
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Affiliation(s)
- Jasmin C Martino
- Southern Seas Ecology Laboratories, School of Biological Sciences, The University of Adelaide, Adelaide, SA 5005, Australia
| | - Zoë A Doubleday
- Southern Seas Ecology Laboratories, School of Biological Sciences, The University of Adelaide, Adelaide, SA 5005, Australia
| | - Ming-Tsung Chung
- Atmosphere and Ocean Research Institute, The University of Tokyo, Kashiwa, Chiba 277-8564, Japan
| | - Bronwyn M Gillanders
- Southern Seas Ecology Laboratories, School of Biological Sciences, The University of Adelaide, Adelaide, SA 5005, Australia
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29
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Duncan MI, James NC, Potts WM, Bates AE. Different drivers, common mechanism; the distribution of a reef fish is restricted by local-scale oxygen and temperature constraints on aerobic metabolism. CONSERVATION PHYSIOLOGY 2020; 8:coaa090. [PMID: 33654546 PMCID: PMC7904075 DOI: 10.1093/conphys/coaa090] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/04/2020] [Revised: 07/14/2020] [Accepted: 10/03/2020] [Indexed: 05/02/2023]
Abstract
The distributions of ectothermic marine organisms are limited to temperature ranges and oxygen conditions that support aerobic respiration, quantified within the metabolic index (ϕ) as the ratio of oxygen supply to metabolic oxygen demand. However, the utility of ϕ at local scales and across heterogenous environments is unknown; yet, these scales are often where actionable management decisions are made. Here, we test if ϕ can delimit the entire distribution of marine organisms when calibrated across an appropriate temperature range and at local scales (~10 km) using the endemic reef fish, Chrysoblephus laticeps, which is found in the highly heterogenous temperature and oxygen environment along the South African coastal zone, as a model species. In laboratory experiments, we find a bidirectional (at 12°C) hypoxia tolerance response across the temperature range tested (8 to 24°C), permitting a piecewise calibration of ϕ. We then project this calibrated ϕ model through temperature and oxygen data from a high spatial resolution (11 to 13 km) ocean model for the periods 2005 to 2009 and 2095 to 2099 to quantify various magnitudes of ϕ across space and time paired with complementary C. laticeps occurrence points. Using random forest species distribution models, we quantify a critical ϕ value of 2.78 below which C. laticeps cannot persist and predict current and future distributions of C. laticeps in line with already observed distribution shifts of other South African marine species. Overall, we find that C. laticeps' distribution is limited by increasing temperatures towards its warm edge but by low oxygen availability towards its cool edge, which is captured within ϕ at fine scales and across heterogenous oxygen and temperature combinations. Our results support the application of ϕ for generating local- and regional-scale predictions of climate change effects on organisms that can inform local conservation management decisions.
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Affiliation(s)
- Murray I Duncan
- Department of Ichthyology and Fisheries Science, Rhodes University, Prince Alfred street, Makhanda, 6140, South Africa
- South African Institute for Aquatic Biodiversity, 11 Somerset street, Makhanda, 6139, South Africa
- Corresponding author: Department of Geological Sciences, Stanford University, Stanford, 94305, USA.
| | - Nicola C James
- Department of Ichthyology and Fisheries Science, Rhodes University, Prince Alfred street, Makhanda, 6140, South Africa
- South African Institute for Aquatic Biodiversity, 11 Somerset street, Makhanda, 6139, South Africa
| | - Warren M Potts
- Department of Ichthyology and Fisheries Science, Rhodes University, Prince Alfred street, Makhanda, 6140, South Africa
| | - Amanda E Bates
- Department of Ocean Sciences, Memorial University of Newfoundland, 0 Marine Lab Rd, St. John’s, NL, A1C 5S7, Canada
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30
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Ledovskaya MS, Voronin VV, Rodygin KS, Ananikov VP. Efficient labeling of organic molecules using 13C elemental carbon: universal access to 13C2-labeled synthetic building blocks, polymers and pharmaceuticals. Org Chem Front 2020. [DOI: 10.1039/c9qo01357a] [Citation(s) in RCA: 20] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Abstract
Synthetic methodology enabled by 13C-elemental carbon is reported. Calcium carbide Ca13C2 was applied to introduce a universal 13C2 unit in the synthesis of labeled alkynes, O,S,N-vinyl derivatives, labeled polymers and 13C2-pyridazine drug core.
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Affiliation(s)
| | | | - Konstantin S. Rodygin
- Institute of Chemistry
- Saint Petersburg State University
- Peterhof
- Russia
- N. D. Zelinsky Institute of Organic Chemistry Russian Academy of Sciences
| | - Valentine P. Ananikov
- Institute of Chemistry
- Saint Petersburg State University
- Peterhof
- Russia
- N. D. Zelinsky Institute of Organic Chemistry Russian Academy of Sciences
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31
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Powering Ocean Giants: The Energetics of Shark and Ray Megafauna. Trends Ecol Evol 2019; 34:1009-1021. [DOI: 10.1016/j.tree.2019.07.001] [Citation(s) in RCA: 21] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/15/2019] [Revised: 06/26/2019] [Accepted: 07/01/2019] [Indexed: 12/26/2022]
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32
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Lin CH, De Gracia B, Pierotti MER, Andrews AH, Griswold K, O’Dea A. Reconstructing reef fish communities using fish otoliths in coral reef sediments. PLoS One 2019; 14:e0218413. [PMID: 31199853 PMCID: PMC6568422 DOI: 10.1371/journal.pone.0218413] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/08/2019] [Accepted: 05/31/2019] [Indexed: 11/18/2022] Open
Abstract
Little is known about long-term changes in coral reef fish communities. Here we present a new technique that leverages fish otoliths in reef sediments to reconstruct coral reef fish communities. We found over 5,400 otoliths in 169 modern and mid-Holocene bulk samples from Caribbean Panama and Dominican Republic mid-Holocene and modern reefs, demonstrating otoliths are abundant in reef sediments. With a specially-built reference collection, we were able to assign over 4,400 otoliths to one of 56 taxa (35 families) though mostly at genus and family level. Many otoliths were from juvenile fishes for which identification is challenging. Richness (by rarefaction) of otolith assemblages was slightly higher in modern than mid-Holocene reefs, but further analyses are required to elucidate the underlying causes. We compared the living fish communities, sampled using icthyocide, with the sediment otolith assemblages on four reefs finding the otolith assemblages faithfully capture the general composition of the living fish communities. Radiocarbon dating performed directly on the otoliths suggests that relatively little mixing of sediment layers particularly on actively accreting branching coral reefs. All otolith assemblages were strongly dominated by small, fast-turnover fish taxa and juvenile individuals, and our exploration on taxonomy, functional ecology and taphonomy lead us to the conclusion that intense predation is likely the most important process for otolith accumulation in reef sediments. We conclude that otolith assemblages in modern and fossil reef sediments can provide a powerful tool to explore ecological changes in reef fish communities over time and space.
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Affiliation(s)
- Chien-Hsiang Lin
- Center for Ecology and Environment, Tunghai University, Taichung, Taiwan
- Department of Life Science, Tunghai University, Taichung, Taiwan
| | | | | | - Allen H. Andrews
- Department of Oceanography, University of Hawaii at Manoa, HI, United States of America
| | - Katie Griswold
- Smithsonian Tropical Research Institute, Balboa, Republic of Panama
| | - Aaron O’Dea
- Smithsonian Tropical Research Institute, Balboa, Republic of Panama
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Evans A. Fish fitness is on the rocks. J Exp Biol 2019. [DOI: 10.1242/jeb.192716] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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