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Michaelian K. The Pigment World: Life's Origins as Photon-Dissipating Pigments. Life (Basel) 2024; 14:912. [PMID: 39063667 PMCID: PMC11277707 DOI: 10.3390/life14070912] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/08/2024] [Revised: 07/03/2024] [Accepted: 07/06/2024] [Indexed: 07/28/2024] Open
Abstract
Many of the fundamental molecules of life share extraordinary pigment-like optical properties in the long-wavelength UV-C spectral region. These include strong photon absorption and rapid (sub-pico-second) dissipation of the induced electronic excitation energy into heat through peaked conical intersections. These properties have been attributed to a "natural selection" of molecules resistant to the dangerous UV-C light incident on Earth's surface during the Archean. In contrast, the "thermodynamic dissipation theory for the origin of life" argues that, far from being detrimental, UV-C light was, in fact, the thermodynamic potential driving the dissipative structuring of life at its origin. The optical properties were thus the thermodynamic "design goals" of microscopic dissipative structuring of organic UV-C pigments, today known as the "fundamental molecules of life", from common precursors under this light. This "UV-C Pigment World" evolved towards greater solar photon dissipation through more complex dissipative structuring pathways, eventually producing visible pigments to dissipate less energetic, but higher intensity, visible photons up to wavelengths of the "red edge". The propagation and dispersal of organic pigments, catalyzed by animals, and their coupling with abiotic dissipative processes, such as the water cycle, culminated in the apex photon dissipative structure, today's biosphere.
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Affiliation(s)
- Karo Michaelian
- Department of Nuclear Physics and Application of Radiation, Instituto de Física, Universidad Nacional Autónoma de México, Circuito Interior de la Investigación Científica, Cuidad Universitaria, Cuidad de México CP 04510, Mexico
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Zheng C, Collins A, Brunborg G, van Schooten FJ, Nordengen AL, Shaposhnikov S, Godschalk R. Assay conditions for estimating differences in base excision repair activity with Fpg-modified comet assay. Cell Biol Toxicol 2023; 39:2775-2786. [PMID: 36932276 PMCID: PMC10693524 DOI: 10.1007/s10565-023-09801-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/07/2022] [Accepted: 03/06/2023] [Indexed: 03/19/2023]
Abstract
DNA repair is an essential agent in cancer development, progression, prognosis, and response to therapy. We have adapted a cellular repair assay based on the formamidopyrimidine DNA glycosylase (Fpg)-modified comet assay to assess DNA repair kinetics. The removal of oxidized nucleobases over time (0-480 min) was analyzed in peripheral blood mononuclear cells (PBMCs) and 8 cell lines. DNA damage was induced by exposure to either Ro19-8022 plus visible light or potassium bromate (KBrO3). The initial amount of damage induced by Ro 19-8022 plus light varied between cell lines, and this was apparently associated with the rate of repair. However, the amount of DNA damage induced by KBrO3 varied less between cell types, so we used this agent to study the kinetics of DNA repair. We found an early phase of ca. 60 min with fast removal of Fpg-sensitive sites, followed by slower removal over the following 7 h. In conclusion, adjusting the initial damage at T0 to an equal level can be achieved by the use of KBrO3, which allows for accurate analysis of subsequent cellular DNA repair kinetics in the first hour after exposure.
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Affiliation(s)
- Congying Zheng
- Department of Pharmacology and Toxicology, NUTRIM School of Nutrition and Translational Research in Metabolism, Maastricht University, 6200, Maastricht, Netherlands
- Norgenotech AS, 64/66, Ullernchassern, Oslo, Norway
- Oslo Cancer Cluster, 64/66, Ullernchassern, Oslo, Norway
| | | | | | - Frederik-Jan van Schooten
- Department of Pharmacology and Toxicology, NUTRIM School of Nutrition and Translational Research in Metabolism, Maastricht University, 6200, Maastricht, Netherlands
| | - Anne Lene Nordengen
- Norgenotech AS, 64/66, Ullernchassern, Oslo, Norway
- Department of Public Health, Sport and Nutrition, University of Agder, 4604, Kristiansand, Norway
- Department of Nutrition, University of Oslo, 0372, Oslo, Norway
| | - Sergey Shaposhnikov
- Norgenotech AS, 64/66, Ullernchassern, Oslo, Norway
- Oslo Cancer Cluster, 64/66, Ullernchassern, Oslo, Norway
| | - Roger Godschalk
- Department of Pharmacology and Toxicology, NUTRIM School of Nutrition and Translational Research in Metabolism, Maastricht University, 6200, Maastricht, Netherlands.
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Ouyang L, Wang N, Irudayaraj J, Majima T. Virus on surfaces: Chemical mechanism, influence factors, disinfection strategies, and implications for virus repelling surface design. Adv Colloid Interface Sci 2023; 320:103006. [PMID: 37778249 DOI: 10.1016/j.cis.2023.103006] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/29/2023] [Revised: 09/07/2023] [Accepted: 09/22/2023] [Indexed: 10/03/2023]
Abstract
While SARS-CoV-2 is generally under control, the question of variants and infections still persists. Fundamental information on how the virus interacts with inanimate surfaces commonly found in our daily life and when in contact with the skin will be helpful in developing strategies to inhibit the spread of the virus. Here in, a critically important review of current understanding of the interaction between virus and surface is summarized from chemistry point-of-view. The Derjaguin-Landau-Verwey-Overbeek and extended Derjaguin-Landau-Verwey-Overbeek theories to model virus attachments on surfaces are introduced, along with the interaction type and strength, and quantification of each component. The virus survival and transfer are affected by a combination of biological, physical, and chemical parameters, as well as environmental parameters. The surface properties for virus and virus survival on typical surfaces such as metals, plastics, and glass are summarized. Attention is also paid to the transfer of virus to/from surfaces and skin. Typical virus disinfection strategies utilizing heat, light, chemicals, and ozone are discussed together with their disinfection mechanism. In the last section, design principles for virus repelling surface chemistry such as surperhydrophobic or surperhydrophilic surfaces are also introduced, to demonstrate how the integration of surface property control and advanced material fabrication can lead to the development of functional surfaces for mitigating the effect of viral infection upon contact.
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Affiliation(s)
- Lei Ouyang
- State Key Laboratory of Biogeology and Environmental Geology, Faculty of Materials Science and Chemistry, China University of Geosciences, Wuhan 430074, China.
| | - Nan Wang
- Hubei Key Laboratory of Bioinorganic Chemistry & Materia Medica, School of Chemistry and Chemical Engineering, Huazhong University of Science and Technology, Wuhan 430074, China
| | - Joseph Irudayaraj
- Department of Bioengineering, College of Engineering, University of Illinois Urbana-Champaign, Urbana, IL 61801, United States
| | - Tetsuro Majima
- Hubei Key Laboratory of Bioinorganic Chemistry & Materia Medica, School of Chemistry and Chemical Engineering, Huazhong University of Science and Technology, Wuhan 430074, China; The Institute of Scientific and Industrial Research (SANKEN), Osaka University, Ibaraki, Osaka 567-0047, Japan
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Michaelian K. The Non-Equilibrium Thermodynamics of Natural Selection: From Molecules to the Biosphere. ENTROPY (BASEL, SWITZERLAND) 2023; 25:1059. [PMID: 37510006 PMCID: PMC10378079 DOI: 10.3390/e25071059] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/16/2023] [Revised: 07/04/2023] [Accepted: 07/10/2023] [Indexed: 07/30/2023]
Abstract
Evolutionary theory suggests that the origin, persistence, and evolution of biology is driven by the "natural selection" of characteristics improving the differential reproductive success of the organism in the given environment. The theory, however, lacks physical foundation, and, therefore, at best, can only be considered a heuristic narrative, of some utility for assimilating the biological and paleontological data at the level of the organism. On deeper analysis, it becomes apparent that this narrative is plagued with problems and paradoxes. Alternatively, non-equilibrium thermodynamic theory, derived from physical law, provides a physical foundation for describing material interaction with its environment at all scales. Here we describe a "natural thermodynamic selection" of characteristics of structures (or processes), based stochastically on increases in the global rate of dissipation of the prevailing solar spectrum. Different mechanisms of thermodynamic selection are delineated for the different biotic-abiotic levels, from the molecular level at the origin of life, up to the level of the present biosphere with non-linear coupling of biotic and abiotic processes. At the levels of the organism and the biosphere, the non-equilibrium thermodynamic description of evolution resembles, respectively, the Darwinian and Gaia descriptions, although the underlying mechanisms and the objective function of selection are fundamentally very different.
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Affiliation(s)
- Karo Michaelian
- Department of Nuclear Physics and Application of Radiation, Instituto de Física, Universidad Nacional Autónoma de México, Circuito Interior de la Investigación Científica, Ciudad Universitaria, Mexico City C.P. 04510, Mexico
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Hernández-Álvarez D, Rosado-Pérez J, Gavia-García G, Arista-Ugalde TL, Aguiñiga-Sánchez I, Santiago-Osorio E, Mendoza-Núñez VM. Aging, Physical Exercise, Telomeres, and Sarcopenia: A Narrative Review. Biomedicines 2023; 11:598. [PMID: 36831134 PMCID: PMC9952920 DOI: 10.3390/biomedicines11020598] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/15/2023] [Revised: 02/12/2023] [Accepted: 02/13/2023] [Indexed: 02/19/2023] Open
Abstract
Human aging is a gradual and adaptive process characterized by a decrease in the homeostatic response, leading to biochemical and molecular changes that are driven by hallmarks of aging, such as oxidative stress (OxS), chronic inflammation, and telomere shortening. One of the diseases associated with the hallmarks of aging, which has a great impact on functionality and quality of life, is sarcopenia. However, the relationship between telomere length, sarcopenia, and age-related mortality has not been extensively studied. Moderate physical exercise has been shown to have a positive effect on sarcopenia, decreasing OxS and inflammation, and inducing protective effects on telomeric DNA. This results in decreased DNA strand breaks, reduced OxS and IA, and activation of repair pathways. Higher levels of physical activity are associated with an apparent increase in telomere length. This review aims to present the current state of the art of knowledge on the effect of physical exercise on telomeric maintenance and activation of repair mechanisms in sarcopenia.
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Affiliation(s)
- David Hernández-Álvarez
- Research Unit on Gerontology, FES Zaragoza, National Autonomous University of Mexico, Mexico City 09230, Mexico
| | - Juana Rosado-Pérez
- Research Unit on Gerontology, FES Zaragoza, National Autonomous University of Mexico, Mexico City 09230, Mexico
| | - Graciela Gavia-García
- Research Unit on Gerontology, FES Zaragoza, National Autonomous University of Mexico, Mexico City 09230, Mexico
| | - Taide Laurita Arista-Ugalde
- Research Unit on Gerontology, FES Zaragoza, National Autonomous University of Mexico, Mexico City 09230, Mexico
| | - Itzen Aguiñiga-Sánchez
- Hematopoiesis and Leukemia Laboratory, Research Unit on Cell Differentiation and Cancer, FES Zaragoza, National Autonomous University of Mexico, Mexico City 09230, Mexico
| | - Edelmiro Santiago-Osorio
- Hematopoiesis and Leukemia Laboratory, Research Unit on Cell Differentiation and Cancer, FES Zaragoza, National Autonomous University of Mexico, Mexico City 09230, Mexico
| | - Víctor Manuel Mendoza-Núñez
- Research Unit on Gerontology, FES Zaragoza, National Autonomous University of Mexico, Mexico City 09230, Mexico
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Potapovich AI, Kostyuk TV, Shman TV, Ermilova TI, Shutava TG, Kostyuk VA. DNA Repair Activation and Cell Death Suppression by Plant Polyphenols in Keratinocytes Exposed to Ultraviolet Irradiation. Rejuvenation Res 2023; 26:1-8. [PMID: 36262038 DOI: 10.1089/rej.2022.0031] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Abstract
This work investigated effects of plant polyphenolic compounds (PPs) on responses of cultured human HaCaT keratinocytes to ultraviolet radiation in the C range (UV-C). The experimental data obtained indicate a cytoprotective effect of PPs added immediately after UV-C exposure. The efficiency of PPs was lowered in the following order: acacetin ≥ silybin > quercetin. The influence of PPs on phosphorylation of histone H2AX and the number of single-strand DNA breaks in the nuclei of keratinocytes were also studied. Using the comet assay and γH2AX staining, followed by fluorescence microscopy, it has been established that PPs can reduce DNA damage in the nuclei of keratinocytes exposed to UV-C. It is concluded that PPs can diminish the destructive effect of UV radiation on skin cells, activating the process of repairing genetic damage.
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Affiliation(s)
| | | | - Tatyana V Shman
- Belarusian Research Center for Pediatric Oncology, Hematology and Immunology, Borovlyany, Belarus
| | - Tatyana I Ermilova
- Belarusian Research Center for Pediatric Oncology, Hematology and Immunology, Borovlyany, Belarus
| | - Tatyana G Shutava
- Institute of Chemistry of New Materials, National Academy of Sciences of Belarus, Minsk, Belarus
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Kim HJ, Yoon HW, Lee MA, Kim YH, Lee CJ. Impact of UV-C Irradiation on Bacterial Disinfection in a Drinking Water Purification System. J Microbiol Biotechnol 2023; 33:106-113. [PMID: 36474325 PMCID: PMC9895992 DOI: 10.4014/jmb.2211.11027] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/14/2022] [Revised: 11/22/2022] [Accepted: 11/25/2022] [Indexed: 12/12/2022]
Abstract
The supply of microbiological risk-free water is essential to keep food safety and public hygiene. And removal, inactivation, and destruction of microorganisms in drinking water are key for ensuring safety in the food industry. Ultraviolet-C (UV-C) irradiation is an attractive method for efficient disinfection of water without generating toxicity and adversely affecting human health. In this study, the disinfection efficiencies of UV-C irradiation on Shigella flexneri (Gram negative) and Listeria monocytogenes (Gram positive) at various concentrations in drinking water were evaluated using a water purifier. Their morphological and physiological characteristics after UV-C irradiation were observed using fluorescence microscopy and flow cytometry combined with live/dead staining. UV-C irradiation (254 nm wavelength, irradiation dose: 40 mJ/cm2) at a water flow velocity of 3.4 L/min showed disinfection ability on both bacteria up to 108 CFU/4 L. And flow cytometric analysis showed different physiological shift between S. flexneri and L. monocytogenes after UV-C irradiation, but no significant shift of morphology in both bacteria. In addition, each bacterium revealed different characteristics with time-course observation after UV-C irradiation: L. monocytogenes dramatically changed its physiological feature and seemed to reach maximum damage at 4 h and then recovered, whereas S. flexneri seemed to gradually die over time. This study revealed that UV-C irradiation of water purifiers is effective in disinfecting microbial contaminants in drinking water and provides basic information on bacterial features/responses after UV-C irradiation.
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Affiliation(s)
- Hyun-Joong Kim
- Department of Food Engineering, Mokpo National University, Muan, 58554, Republic of Korea
| | - Hee-Won Yoon
- Department of Food Engineering, Mokpo National University, Muan, 58554, Republic of Korea
| | - Min-A Lee
- Department of Food Engineering, Mokpo National University, Muan, 58554, Republic of Korea
| | - Young-Hoon Kim
- Department of Food Engineering, Mokpo National University, Muan, 58554, Republic of Korea
| | - Chang Joo Lee
- Department of Food Science and Biotechnology, Wonkwang University, Iksan, Jeonbuk 54538, Republic of Korea,Corresponding author Phone: +82-63-850-6825 Fax: +82-63-850-7308 E-mail address:
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Lim HS, Simon SE, Yow YY, Saidur R, Tan KO. Photoprotective activities of Lignosus rhinocerus in UV-irradiated human keratinocytes. JOURNAL OF ETHNOPHARMACOLOGY 2022; 299:115621. [PMID: 35987413 DOI: 10.1016/j.jep.2022.115621] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/23/2022] [Revised: 07/28/2022] [Accepted: 08/06/2022] [Indexed: 06/15/2023]
Abstract
ETHNOPHARMACOLOGICAL RELEVANCE Lignosus rhinocerus, also known as Tiger Milk Mushroom has been used traditionally to treat a variety of human conditions, including asthma, diabetes, respiratory disease, skin allergy, and food poisoning. The reported activities of Lignosus rhinocerus extracts include anti-inflammatory, anti-oxidant, anti-asthmatic, anti-microbial, anti-cancer, neuroprotection, and immune modulation effects. However, its effect on human skin is not well documented, including human skin exposed to ultraviolet light (UV). Exposure to UV can trigger various cellular responses, including inflammation, oxidative stress, DNA damage, cell death, and cellular aging. AIM OF THE STUDY The study aims to investigate the effects of methanolic extract prepared from cultured Lignosus rhinocerus (herein referred to as TM02 and its methanol extract as TM02-ME) on UV-irradiated human keratinocytes. MATERIALS AND METHODS Powdered stock of TM02 was dissolved and sequentially extracted with different solvents to prepare the extracts and the methanol extract was subsequently characterized based on its bio-activities on HaCaT human keratinocytes. The keratinocytes were pre-treated with the methanol extract followed by UV-irradiation. Cellular responses of the HaCaT cells such as cell viability, DNA damage, as well as gene and protein expressions that were responsive to the treatments, were characterized by using bio-assays, including reverse-transcription based PCR, Western blot, cell viability, and mitochondrial Cytochrome C release assays. RESULTS TM02-ME protected HaCaT cells from UV-induced DNA damage and cell death in a dose-dependent manner. Pre-treatment of HaCaT cells with TM02-ME led to a 39% reduction of cyclobutane pyrimidine dimers (CPD) and up-regulated the gene expression of REV1 and SPINK5 in UVB-irradiated HaCaT cells when compared to the control. In addition, TM-02-ME treated HaCaT cells increased the expression of BCL-XL and BCL-2 proteins which coincided with the down-regulation of mitochondrial Cyt. C release in the UV-B irradiated HaCaT cells. The results were further supported by data that showed the stable clones of HaCaT cells stably expressed BCL-XL were resistant to UVB-induced cell death. CONCLUSIONS __The results showed that TM02-ME confers photoprotective activities to UVB-irradiated HaCaT cells, leading to a reduction in DNA damage and cell death as well as up-regulated the expression of REV1 and SPINK5 which are involved in DNA repair and skin barrier function, respectively. The up-regulation of pro-survival members of the BCL-2 family by TM02-ME confers protection against UVB-induced cell death.
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Affiliation(s)
- Hui Sin Lim
- Department of Biological Sciences, School of Medical and Life Sciences, Sunway University, No.5 Jalan Universiti, Bandar Sunway, 47500, Subang Jaya, Selangor Darul Ehsan, Malaysia
| | - Samson Eugin Simon
- Department of Biological Sciences, School of Medical and Life Sciences, Sunway University, No.5 Jalan Universiti, Bandar Sunway, 47500, Subang Jaya, Selangor Darul Ehsan, Malaysia
| | - Yoon-Yen Yow
- Department of Biological Sciences, School of Medical and Life Sciences, Sunway University, No.5 Jalan Universiti, Bandar Sunway, 47500, Subang Jaya, Selangor Darul Ehsan, Malaysia
| | - R Saidur
- Research Centre for Nano-materials and Energy Technology (RCNMET), School of Engineering and Technology, Sunway University, No.5 Jalan Universiti, Bandar Sunway, 47500, Subang Jaya, Selangor Darul Ehsan, Malaysia
| | - Kuan Onn Tan
- Department of Biological Sciences, School of Medical and Life Sciences, Sunway University, No.5 Jalan Universiti, Bandar Sunway, 47500, Subang Jaya, Selangor Darul Ehsan, Malaysia.
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Kovacs Z, Muncan J, Veleva P, Oshima M, Shigeoka S, Tsenkova R. Aquaphotomics for monitoring of groundwater using short-wavelength near-infrared spectroscopy. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2022; 279:121378. [PMID: 35617835 DOI: 10.1016/j.saa.2022.121378] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/19/2022] [Revised: 04/22/2022] [Accepted: 05/09/2022] [Indexed: 06/15/2023]
Abstract
Water spectrum of any aqueous system contains information about OH covalent and hydrogen bonds that are highly influenced by the environment and the rest of the molecules in the system. When aquaphotomics is used to analyze the water near infrared (NIR) spectra, the information about the water molecular structure can be obtained as a function of internal and external factors. The objective of this research is to apply aquaphotomics analysis to evaluate different groundwaters by using their NIR unique spectral pattern, robust to external influences of temperature and humidity, that can potentially be used for water type identification and screening practice. Two groundwaters obtained at different depths and their mixture, differing in mineral content and molecular structure were monitored on a daily basis using portable visible/NIR (vis/NIR) spectrometer during three consecutive years. The spectra were pre-processed by smoothing and multiplicative scatter correction (MSC) to remove noise and baseline effects. Results showed that NIR spectral patterns of groundwater samples were affected by changes in environmental factors - temperature, humidity, time and others. The water absorbance bands which are highly influenced by humidity and temperature in short wavelength NIR region were identified. Their avoidance resulted in obtaining consistent spectral patterns during the entire monitoring period, unique for each groundwater, that can be used as its fingerprint and monitored over time. Consistency and uniqueness of the spectral pattern for each groundwater provide a potential to use the deviation of spectral pattern as an indicator of changes in the water. These results confirm that vis/NIR spectral pattern can be used as an integrative marker of water status, stable over time, providing the basis for an efficient cost-effective method for monitoring of water functionality.
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Affiliation(s)
- Zoltan Kovacs
- Department of Measurements and Process Control, Institute of Food Science and Technology, Hungarian University of Agriculture and Life Sciences, 14-16 Somlói str, Budapest 1118, Hungary.
| | - Jelena Muncan
- Aquaphotomics Research Department, Graduate School of Agricultural Science, Kobe University, 1-1, Rokkodai, Nada, Kobe 657-8501, Japan.
| | - Petya Veleva
- Trakia University, Department of Agricultural Engineering, Agricultural Faculty, Stara Zagora 6000, Bulgaria
| | - Mitsue Oshima
- Shigeoka Co. Ltd, 898 Konono, Hashimoto City, Wakayama 648-0086, Japan; Yunosato Aquaphotomics Lab, 1075 Konono, Hashimoto City, Wakayama 648-0086, Japan.
| | - Shogo Shigeoka
- Shigeoka Co. Ltd, 898 Konono, Hashimoto City, Wakayama 648-0086, Japan; Yunosato Aquaphotomics Lab, 1075 Konono, Hashimoto City, Wakayama 648-0086, Japan.
| | - Roumiana Tsenkova
- Aquaphotomics Research Department, Graduate School of Agricultural Science, Kobe University, 1-1, Rokkodai, Nada, Kobe 657-8501, Japan.
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Water as a Probe for Standardization of Near-Infrared Spectra by Mutual-Individual Factor Analysis. MOLECULES (BASEL, SWITZERLAND) 2022; 27:molecules27186069. [PMID: 36144801 PMCID: PMC9503549 DOI: 10.3390/molecules27186069] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 08/06/2022] [Revised: 09/11/2022] [Accepted: 09/13/2022] [Indexed: 11/17/2022]
Abstract
The standardization of near-infrared (NIR) spectra is essential in practical applications, because various instruments are generally employed. However, standardization is challenging due to numerous perturbations, such as the instruments, testing environments, and sample compositions. In order to explain the spectral changes caused by the various perturbations, a two-step standardization technique was presented in this work called mutual–individual factor analysis (MIFA). Taking advantage of the sensitivity of a water probe to perturbations, the spectral information from a water spectral region was gradually divided into mutual and individual parts. With aquaphotomics expertise, it can be found that the mutual part described the overall spectral features among instruments, whereas the individual part depicted the difference of component structural changes in the sample caused by operation and the measurement conditions. Furthermore, the spectral difference was adjusted by the coefficients in both parts. The effectiveness of the method was assessed by using two NIR datasets of corn and wheat, respectively. The results showed that the standardized spectra can be successfully predicted by using the partial least squares (PLS) models developed with the spectra from the reference instrument. Consequently, the MIFA offers a viable solution to standardize the spectra obtained from several instruments when measurements are affected by multiple factors.
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Immunotherapy for the Treatment of Squamous Cell Carcinoma: Potential Benefits and Challenges. Int J Mol Sci 2022; 23:ijms23158530. [PMID: 35955666 PMCID: PMC9368833 DOI: 10.3390/ijms23158530] [Citation(s) in RCA: 9] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/15/2022] [Revised: 07/26/2022] [Accepted: 07/29/2022] [Indexed: 02/01/2023] Open
Abstract
Melanoma and nonmelanoma skin cancers (NMSCs) are recognized as among the most common neoplasms, mostly in white people, with an increasing incidence rate. Among the NMSCs, squamous cell carcinoma (SCC) is the most prevalent malignancy known to affect people with a fair complexion who are exposed to extreme ultraviolet radiation (UVR), have a hereditary predisposition, or are immunosuppressed. There are several extrinsic and intrinsic determinants that contribute to the pathophysiology of the SCC. The therapeutic modalities depend on the SCC stages, from actinic keratosis to late-stage multiple metastases. Standard treatments include surgical excision, radiotherapy, and chemotherapy. As SCC represents a favorable tumor microenvironment with high tumor mutational burden, infiltration of immune cells, and expression of immune checkpoints, the SCC tumors are highly responsive to immunotherapies. Until now, there are three checkpoint inhibitors, cemiplimab, pembrolizumab, and nivolumab, that are approved for the treatment of advanced, recurrent, or metastatic SCC patients in the United States. Immunotherapy possesses significant therapeutic benefits for patients with metastatic or locally advanced tumors not eligible for surgery or radiotherapy to avoid the potential toxicity caused by the chemotherapies. Despite the high tolerability and efficiency, the existence of some challenges has been revealed such as, resistance to immunotherapy, less availability of the biomarkers, and difficulty in appropriate patient selection. This review aims to accumulate evidence regarding the genetic alterations related to SCC, the factors that contribute to the potential benefits of immunotherapy, and the challenges to follow this treatment regime.
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Xiao J, Lu H, Ma T, Ni X, Chang T, Liu M, Li N, Lu P, Ke C, Tian Q, Zou L, Wang F, Wang W, Zhang L, Yuan P, Liu L, Zhang J, Shi F, Duan Q, Zhu F. Worenine Prevents Solar Ultraviolet–Induced Sunburn by Inhibiting JNK2. Front Pharmacol 2022; 13:881042. [PMID: 35979232 PMCID: PMC9377457 DOI: 10.3389/fphar.2022.881042] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/22/2022] [Accepted: 05/23/2022] [Indexed: 11/13/2022] Open
Abstract
Excessive solar ultraviolet (SUV) radiation often causes dermatitis, photoaging, and even skin cancer. In the pathological processes of SUV-induced sunburn, JNK is activated by phosphorylation, and it in turn phosphorylates its downstream transcription factors, such as ATF2 and c-jun. The transcription factors further regulate the expression of pro-inflammatory genes, such as IL-6 and TNF-α, which ultimately leads to dermatitis. Therefore, inhibiting JNK may be a strategy to prevent dermatitis. In this study, we screened for worenine as a potential drug candidate for inhibiting sunburn. We determined that worenine inhibited the JNK-ATF2/c-jun signaling pathway and the secretion of IL-6 and TNF-α in cell culture and in vivo, confirming the role of worenine in inhibiting sunburn. Furthermore, we determined that worenine bound and inhibited JNK2 activity in vitro through the MST, kinase, and in vitro kinase assays. Therefore, worenine might be a promising drug candidate for the prevention and treatment of SUV-induced sunburn.
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Affiliation(s)
- Juanjuan Xiao
- Cancer Research Institute, The Affiliated Hospital of Guilin Medical University, Guilin, China
- Guangxi Health Commission Key Laboratory of Novel Onco-Kinases in Target Therapy, The Affiliated Hospital of Guilin Medical University, Guilin, China
- *Correspondence: Hui Lu, ; Juanjuan Xiao, ; Qiuhong Duan, ; Feng Zhu, , orcid.org/0000-0003-1172-0102
| | - Hui Lu
- Wuhan Children’s Hospital (Wuhan Maternal and Child Healthcare Hospital), Tongji Medical College, Huazhong University of Science and Technology, Wuhan, China
- Department of Biochemistry and Molecular Biology, School of Basic Medicine, Tongji Medical College, Huazhong University of Science and Technology, Wuhan, China
- *Correspondence: Hui Lu, ; Juanjuan Xiao, ; Qiuhong Duan, ; Feng Zhu, , orcid.org/0000-0003-1172-0102
| | - Tengfei Ma
- Department of Biochemistry and Molecular Biology, School of Basic Medicine, Tongji Medical College, Huazhong University of Science and Technology, Wuhan, China
| | - Xiaofang Ni
- Wuhan Children’s Hospital (Wuhan Maternal and Child Healthcare Hospital), Tongji Medical College, Huazhong University of Science and Technology, Wuhan, China
| | - Teding Chang
- Second Clinical College, Tongji Medical College, Huazhong University of Science and Technology, Wuhan, China
| | - Man Liu
- Second Clinical College, Tongji Medical College, Huazhong University of Science and Technology, Wuhan, China
| | - Nijie Li
- Second Clinical College, Tongji Medical College, Huazhong University of Science and Technology, Wuhan, China
| | - Peijiang Lu
- Second Clinical College, Tongji Medical College, Huazhong University of Science and Technology, Wuhan, China
| | - Changshu Ke
- Department of Pathology, Tongji Hospital, Tongji Medical College, Huazhong University of Science and Technology, Wuhan, China
| | - Qin Tian
- Department of Biochemistry and Molecular Biology, School of Basic Medicine, Tongji Medical College, Huazhong University of Science and Technology, Wuhan, China
| | - Ling Zou
- Department of Biochemistry and Molecular Biology, School of Basic Medicine, Tongji Medical College, Huazhong University of Science and Technology, Wuhan, China
| | - Fei Wang
- Department of Biochemistry and Molecular Biology, School of Basic Medicine, Tongji Medical College, Huazhong University of Science and Technology, Wuhan, China
| | - Wei Wang
- Department of Biochemistry and Molecular Biology, School of Basic Medicine, Tongji Medical College, Huazhong University of Science and Technology, Wuhan, China
| | - Lu Zhang
- Department of Biochemistry and Molecular Biology, School of Basic Medicine, Tongji Medical College, Huazhong University of Science and Technology, Wuhan, China
| | - Ping Yuan
- Department of Biochemistry and Molecular Biology, School of Basic Medicine, Tongji Medical College, Huazhong University of Science and Technology, Wuhan, China
| | - Lin Liu
- Department of Biochemistry and Molecular Biology, School of Basic Medicine, Tongji Medical College, Huazhong University of Science and Technology, Wuhan, China
| | - Jianmin Zhang
- Department of Biochemistry and Molecular Biology, School of Basic Medicine, Tongji Medical College, Huazhong University of Science and Technology, Wuhan, China
| | - Fei Shi
- Department of Dermatology, The General Hospital of Air Force, Beijing, China
| | - Qiuhong Duan
- Department of Biochemistry and Molecular Biology, School of Basic Medicine, Tongji Medical College, Huazhong University of Science and Technology, Wuhan, China
- *Correspondence: Hui Lu, ; Juanjuan Xiao, ; Qiuhong Duan, ; Feng Zhu, , orcid.org/0000-0003-1172-0102
| | - Feng Zhu
- Cancer Research Institute, The Affiliated Hospital of Guilin Medical University, Guilin, China
- Guangxi Health Commission Key Laboratory of Novel Onco-Kinases in Target Therapy, The Affiliated Hospital of Guilin Medical University, Guilin, China
- Department of Biochemistry and Molecular Biology, School of Basic Medicine, Tongji Medical College, Huazhong University of Science and Technology, Wuhan, China
- Guangxi Key Laboratory of Molecular Medicine in Liver Injury and Repair, The Affiliated Hospital of Guilin Medical University, Guilin, China
- *Correspondence: Hui Lu, ; Juanjuan Xiao, ; Qiuhong Duan, ; Feng Zhu, , orcid.org/0000-0003-1172-0102
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13
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Camponogara C, Oliveira SM. Are TRPA1 and TRPV1 channel-mediated signalling cascades involved in UVB radiation-induced sunburn? ENVIRONMENTAL TOXICOLOGY AND PHARMACOLOGY 2022; 92:103836. [PMID: 35248760 DOI: 10.1016/j.etap.2022.103836] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/17/2021] [Revised: 02/09/2022] [Accepted: 02/28/2022] [Indexed: 06/14/2023]
Abstract
Burn injuries are underappreciated injuries associated with substantial morbidity and mortality. Overexposure to ultraviolet (UV) radiation has dramatic clinical effects in humans and is a significant public health concern. Although the mechanisms underlying UVB exposure are not fully understood, many studies have made substantial progress in the pathophysiology of sunburn in terms of its molecular aspects in the last few years. It is well established that the transient receptor potential ankyrin 1 (TRPA1), and vanilloid 1 (TRPV1) channels modulate the inflammatory, oxidative, and proliferative processes underlying UVB radiation exposure. However, it is still unknown which mechanisms underlying TRPV1/A1 channel activation are elicited in sunburn induced by UVB radiation. Therefore, in this review, we give an overview of the TRPV1/A1 channel-mediated signalling cascades that may be involved in the pathophysiology of sunburn induced by UVB radiation. These data will undoubtedly help to explain the various features of sunburn and contribute to the development of novel therapeutic approaches to better treat it.
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Affiliation(s)
- Camila Camponogara
- Graduated Program in Biological Sciences: Toxicological Biochemistry, Federal University of Santa Maria, Santa Maria, RS, Brazil
| | - Sara Marchesan Oliveira
- Graduated Program in Biological Sciences: Toxicological Biochemistry, Federal University of Santa Maria, Santa Maria, RS, Brazil; Department of Biochemistry and Molecular Biology, Centre of Natural and Exact Sciences, Federal University of Santa Maria, Santa Maria, RS, Brazil.
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14
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Gabellone S, Piccinino D, Filippi S, Castrignanò T, Zippilli C, Del Buono D, Saladino R. Lignin Nanoparticles Deliver Novel Thymine Biomimetic Photo-Adducts with Antimelanoma Activity. Int J Mol Sci 2022; 23:ijms23020915. [PMID: 35055101 PMCID: PMC8777952 DOI: 10.3390/ijms23020915] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/01/2021] [Revised: 01/12/2022] [Accepted: 01/13/2022] [Indexed: 02/05/2023] Open
Abstract
We report here the synthesis of novel thymine biomimetic photo-adducts bearing an alkane spacer between nucleobases and characterized by antimelanoma activity against two mutated cancer cell lines overexpressing human Topoisomerase 1 (TOP1), namely SKMEL28 and RPMI7951. Among them, Dewar Valence photo-adducts showed a selectivity index higher than the corresponding pyrimidine-(6-4)-pyrimidone and cyclobutane counterpart and were characterized by the highest affinity towards TOP1/DNA complex as evaluated by molecular docking analysis. The antimelanoma activity of novel photo-adducts was retained after loading into UV photo-protective lignin nanoparticles as stabilizing agent and efficient drug delivery system. Overall, these results support a combined antimelanoma and UV sunscreen strategy involving the use of photo-protective lignin nanoparticles for the controlled release of thymine dimers on the skin followed by their sacrificial transformation into photo-adducts and successive inhibition of melanoma and alert of cellular UV machinery repair pathways.
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15
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Sun Y, Cai W, Shao X. Chemometrics: An Excavator in Temperature-Dependent Near-Infrared Spectroscopy. Molecules 2022; 27:452. [PMID: 35056768 PMCID: PMC8777604 DOI: 10.3390/molecules27020452] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/13/2021] [Revised: 01/07/2022] [Accepted: 01/10/2022] [Indexed: 01/11/2023] Open
Abstract
Temperature-dependent near-infrared (NIR) spectroscopy has been developed and taken as a powerful technique for analyzing the structure of water and the interactions in aqueous systems. Due to the overlapping of the peaks in NIR spectra, it is difficult to obtain the spectral features showing the structures and interactions. Chemometrics, therefore, is adopted to improve the spectral resolution and extract spectral information from the temperature-dependent NIR spectra for structural and quantitative analysis. In this review, works on chemometric studies for analyzing temperature-dependent NIR spectra were summarized. The temperature-induced spectral features of water structures can be extracted from the spectra with the help of chemometrics. Using the spectral variation of water with the temperature, the structural changes of small molecules, proteins, thermo-responsive polymers, and their interactions with water in aqueous solutions can be demonstrated. Furthermore, quantitative models between the spectra and the temperature or concentration can be established using the spectral variations of water and applied to determine the compositions in aqueous mixtures.
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Affiliation(s)
| | | | - Xueguang Shao
- Research Center for Analytical Sciences, Frontiers Science Center for New Organic Matter, College of Chemistry, Nankai University, Tianjin Key Laboratory of Biosensing and Molecular Recognition, State Key Laboratory of Medicinal Chemical Biology, Tianjin 300071, China; (Y.S.); (W.C.)
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16
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Braný D, Dvorská D, Strnádel J, Matáková T, Halašová E, Škovierová H. Effect of Cold Atmospheric Plasma on Epigenetic Changes, DNA Damage, and Possibilities for Its Use in Synergistic Cancer Therapy. Int J Mol Sci 2021; 22:ijms222212252. [PMID: 34830132 PMCID: PMC8617606 DOI: 10.3390/ijms222212252] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/06/2021] [Revised: 11/06/2021] [Accepted: 11/11/2021] [Indexed: 12/17/2022] Open
Abstract
Cold atmospheric plasma has great potential for use in modern medicine. It has been used in the clinical treatment of skin diseases and chronic wounds, and in laboratory settings it has shown effects on selective decrease in tumour-cell viability, reduced tumour mass in animal models and stem-cell proliferation. Many researchers are currently focusing on its application to internal structures and the use of plasma-activated liquids in tolerated and effective human treatment. There has also been analysis of plasma's beneficial synergy with standard pharmaceuticals to enhance their effect. Cold atmospheric plasma triggers various responses in tumour cells, and this can result in epigenetic changes in both DNA methylation levels and histone modification. The expression and activity of non-coding RNAs with their many important cell regulatory functions can also be altered by cold atmospheric plasma action. Finally, there is ongoing debate whether plasma-produced radicals can directly affect DNA damage in the nucleus or only initiate apoptosis or other forms of cell death. This article therefore summarises accepted knowledge of cold atmospheric plasma's influence on epigenetic changes, the expression and activity of non-coding RNAs, and DNA damage and its effect in synergistic treatment with routinely used pharmaceuticals.
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Affiliation(s)
- Dušan Braný
- Biomedical Centre Martin, Jessenius Faculty of Medicine in Martin, Comenius University in Bratislava, 036 01 Martin, Slovakia; (D.B.); (J.S.); (E.H.); (H.Š.)
| | - Dana Dvorská
- Biomedical Centre Martin, Jessenius Faculty of Medicine in Martin, Comenius University in Bratislava, 036 01 Martin, Slovakia; (D.B.); (J.S.); (E.H.); (H.Š.)
- Correspondence:
| | - Ján Strnádel
- Biomedical Centre Martin, Jessenius Faculty of Medicine in Martin, Comenius University in Bratislava, 036 01 Martin, Slovakia; (D.B.); (J.S.); (E.H.); (H.Š.)
| | - Tatiana Matáková
- Department of Medical Biochemistry, Jessenius Faculty of Medicine in Martin, Comenius University, Bratislava, 036 01 Martin, Slovakia;
| | - Erika Halašová
- Biomedical Centre Martin, Jessenius Faculty of Medicine in Martin, Comenius University in Bratislava, 036 01 Martin, Slovakia; (D.B.); (J.S.); (E.H.); (H.Š.)
| | - Henrieta Škovierová
- Biomedical Centre Martin, Jessenius Faculty of Medicine in Martin, Comenius University in Bratislava, 036 01 Martin, Slovakia; (D.B.); (J.S.); (E.H.); (H.Š.)
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17
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Leung WY, Murray V. The influence of DNA methylation on the sequence specificity of UVB- and UVC-induced DNA damage. JOURNAL OF PHOTOCHEMISTRY AND PHOTOBIOLOGY B-BIOLOGY 2021; 221:112225. [PMID: 34090037 DOI: 10.1016/j.jphotobiol.2021.112225] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/24/2021] [Revised: 05/23/2021] [Accepted: 05/26/2021] [Indexed: 10/21/2022]
Abstract
Ultraviolet light (UV) is one of the most common DNA damaging agents in the human environment. This paper examined the influence of DNA methylation on the level of UVB- and UVC-induced DNA damage. A purified DNA sequence containing CpG dinucleotides was methylated with a CpG methylase. We employed the linear amplification technique and the end-labelling approach followed by capillary electrophoresis with laser-induced fluorescence to investigate the sequence specificity of UV-induced DNA damage. The linear amplification technique mainly detects cyclobutane pyrimidine dimer (CPD) adducts, while the end-labelling approach mainly detects 6-4 photoproduct (6-4PP) lesions. The levels of CPD and 6-4PP adducts detected in methylated/unmethylated labelled sequences were analysed. The comparison showed that 5-methyl-cytosine significantly reduced the level of both CPD and 6-4PP adducts after UVB (308 nm) and UVC (254 nm) irradiation compared with the non-methylated counterpart.
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Affiliation(s)
- Wai Y Leung
- School of Biotechnology and Biomolecular Sciences, University of New South Wales, Sydney, NSW 2052, Australia
| | - Vincent Murray
- School of Biotechnology and Biomolecular Sciences, University of New South Wales, Sydney, NSW 2052, Australia.
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18
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Influence of steroids on hydrogen bonds in membranes assessed by near infrared spectroscopy. BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES 2021; 1863:183553. [PMID: 33422482 DOI: 10.1016/j.bbamem.2021.183553] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Subscribe] [Scholar Register] [Received: 05/07/2020] [Revised: 12/27/2020] [Accepted: 01/04/2021] [Indexed: 11/24/2022]
Abstract
The covalent OH bonds of water vibrate and absorb radiation in the near infrared (NIR) region at wavelengths that vary according to the strength of the bonds which, at the same time, are sensitive to the number and/or strength of hydrogen bonds. By means of multivariate analytical tools, such spectral shift was exploited to study the effect of temperature, 25-hydroxycholesterol and progesterone on the H-bonded network of water in DMPA membranes. Temperature was found as the dominating factor altering the NIR spectra of water and then the H-bonds. Increasing temperatures disrupt the H-bonds network, strengthening the OH covalent bonds. The disruption of the H-bonds along the 13-58 °C range was noticeably greater than that caused by lipids or steroids at 500 μM. The H-bonded network of the interfacial water in DMPA membranes was disrupted by the presence of 25-hydroxycholesterol, but no significant disruption was observed in the presence of progesterone. The reduction of the H-bonds entails a reduction in the aggregation of the interfacial water by a reduction in the number of H-bonded molecules. It is proposed that the number of water molecules bonded with two H-bonds diminishes and the number of molecules with no H-bond increases roughly at similar proportions, with a constant population of molecules with one H-bond. The opposed effects of steroids are discussed in the context of their opposed effects on the phase state of membranes, the membrane water content and the steroid molecular structure.
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19
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Wang W, Kong W, Shen T, Man Z, Zhu W, He Y, Liu F, Liu Y. Application of Laser-Induced Breakdown Spectroscopy in Detection of Cadmium Content in Rice Stems. FRONTIERS IN PLANT SCIENCE 2020; 11:599616. [PMID: 33391312 PMCID: PMC7775383 DOI: 10.3389/fpls.2020.599616] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/27/2020] [Accepted: 11/30/2020] [Indexed: 06/12/2023]
Abstract
The presence of cadmium in rice stems is a limiting factor that restricts its function as biomass. In order to prevent potential risks of heavy metals in rice straws, this study introduced a fast detection method of cadmium in rice stems based on laser induced breakdown spectroscopy (LIBS) and chemometrics. The wavelet transform (WT), area normalization and median absolute deviation (MAD) were used to preprocess raw spectra to improve spectral stability. Principal component analysis (PCA) was used for cluster analysis. The classification models were established to distinguish cadmium stress degree of stems, of which extreme learning machine (ELM) had the best effect, with 91.11% of calibration accuracy and 93.33% of prediction accuracy. In addition, multivariate models were established for quantitative detection of cadmium. It can be found that ELM model had the best prediction effects with prediction correlation coefficient of 0.995. The results show that LIBS provides an effective method for detection of cadmium in rice stems. The combination of LIBS technology and chemometrics can quickly detect the presence of cadmium in rice stems, and accurately realize qualitative and quantitative analysis of cadmium, which could be of great significance to promote the development of new energy industry.
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Affiliation(s)
- Wei Wang
- College of Biosystems Engineering and Food Science, Zhejiang University, Hangzhou, China
| | - Wenwen Kong
- College of Biosystems Engineering and Food Science, Zhejiang University, Hangzhou, China
- School of Information Engineering, Zhejiang A & F University, Hangzhou, China
| | - Tingting Shen
- College of Biosystems Engineering and Food Science, Zhejiang University, Hangzhou, China
| | - Zun Man
- College of Biosystems Engineering and Food Science, Zhejiang University, Hangzhou, China
| | - Wenjing Zhu
- School of Agricultural Equipment Engineering, Jiangsu University, Zhenjiang, China
| | - Yong He
- College of Biosystems Engineering and Food Science, Zhejiang University, Hangzhou, China
- Key Laboratory of Spectroscopy Sensing, Ministry of Agriculture and Rural Affairs, Hangzhou, China
| | - Fei Liu
- College of Biosystems Engineering and Food Science, Zhejiang University, Hangzhou, China
- Key Laboratory of Spectroscopy Sensing, Ministry of Agriculture and Rural Affairs, Hangzhou, China
| | - Yufei Liu
- College of Biosystems Engineering and Food Science, Zhejiang University, Hangzhou, China
- Key Laboratory of Spectroscopy Sensing, Ministry of Agriculture and Rural Affairs, Hangzhou, China
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20
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Souza-Neto FP, Marinello PC, Melo GP, Ramalho LZN, Cela EM, Campo VE, González-Maglio DH, Cecchini R, Cecchini AL. Metformin inhibits the inflammatory and oxidative stress response induced by skin UVB-irradiation and provides 4-hydroxy-2-nonenal and nitrotyrosine formation and p53 protein activation. J Dermatol Sci 2020; 100:152-155. [PMID: 33051086 DOI: 10.1016/j.jdermsci.2020.05.012] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/16/2019] [Revised: 04/04/2020] [Accepted: 05/27/2020] [Indexed: 10/24/2022]
Affiliation(s)
| | | | - Gabriela Pasqual Melo
- Laboratory of Molecular Pathology, State University of Londrina, Brazil; ZIK Plasmatis, Leibniz Institute for Plasma Science and Technology (INP), Greifswald, Germany
| | | | - Eliana M Cela
- Universidad De Buenos Aires, Facultad De Farmacia y Bioquímica, Cátedra De Inmunología, Buenos Aires, Argentina; CONICET-Universidad De Buenos Aires, Instituto De Estudios De La Inmunidad Humoral (IDEHU), Buenos Aires, Argentina
| | - Valeria E Campo
- Universidad De Buenos Aires, Facultad De Farmacia y Bioquímica, Cátedra De Inmunología, Buenos Aires, Argentina; CONICET-Universidad De Buenos Aires, Instituto De Estudios De La Inmunidad Humoral (IDEHU), Buenos Aires, Argentina
| | - Daniel H González-Maglio
- Universidad De Buenos Aires, Facultad De Farmacia y Bioquímica, Cátedra De Inmunología, Buenos Aires, Argentina; CONICET-Universidad De Buenos Aires, Instituto De Estudios De La Inmunidad Humoral (IDEHU), Buenos Aires, Argentina
| | - Rubens Cecchini
- Laboratory of Pathophysiology and Free Radicals, State University of Londrina, Brazil
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21
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Kovacs Z, Pollner B, Bazar G, Muncan J, Tsenkova R. A Novel Tool for Visualization of Water Molecular Structure and Its Changes, Expressed on the Scale of Temperature Influence. Molecules 2020; 25:molecules25092234. [PMID: 32397462 PMCID: PMC7248758 DOI: 10.3390/molecules25092234] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/08/2020] [Revised: 04/30/2020] [Accepted: 05/06/2020] [Indexed: 12/28/2022] Open
Abstract
Aquaphotomics utilizes water-light interaction for in-depth exploration of water, its structure and role in aqueous and biologic systems. The aquagram, a major analytical tool of aquaphotomics, allows comparison of water molecular structures of different samples by comparing their respective absorbance spectral patterns. Temperature is the strongest perturbation of water changing almost all water species. To better interpret and understand spectral patterns, the objective of this work was to develop a novel, temperature-scaled aquagram that provides standardized information about changes in water molecular structure caused by solutes, with its effects translated to those which would have been caused by respective temperature changes. NIR spectra of Milli-Q water in the temperature range of 20–70 °C and aqueous solutions of potassium chloride in concentration range of 1 to 1000 mM were recorded to demonstrate the applicability of the proposed novel tool. The obtained results presented the influence of salt on the water molecular structure expressed as the equivalent effect of temperature in degrees of Celsius. The temperature-based aquagrams showed the well-known structure breaking and structure making effects of salts on water spectral pattern, for the first time presented in the terms of temperature influence on pure water. This new method enables comparison of spectral patterns providing a universal tool for evaluation of various bio-aqueous systems which can provide better insight into the system’s functionality.
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Affiliation(s)
- Zoltan Kovacs
- Department of Physics and Control, Faculty of Food Science, Szent István University, H-1118 Budapest, Hungary
- Correspondence: (Z.K.); (R.T.); Tel.: +36-1-305-7623 (Z.K.); +81-78-803-5911 (R.T.)
| | - Bernhard Pollner
- Department for Hygiene and Medical Microbiology, Medical University of Innsbruck, A-6020 Innsbruck, Austria;
| | - George Bazar
- Department of Nutritional Science and Production Technology, Faculty of Agricultural and Environmental Sciences, Kaposvar University, H-7400 Kaposvar, Hungary;
| | - Jelena Muncan
- Biomeasurement Technology Laboratory, Graduate School of Agricultural Science, Kobe University, Kobe 657-8501, Japan;
| | - Roumiana Tsenkova
- Biomeasurement Technology Laboratory, Graduate School of Agricultural Science, Kobe University, Kobe 657-8501, Japan;
- Correspondence: (Z.K.); (R.T.); Tel.: +36-1-305-7623 (Z.K.); +81-78-803-5911 (R.T.)
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22
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Sun Y, Ma L, Cai W, Shao X. Interaction between tau and water during the induced aggregation revealed by near-infrared spectroscopy. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2020; 230:118046. [PMID: 31954360 DOI: 10.1016/j.saa.2020.118046] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/20/2019] [Revised: 12/31/2019] [Accepted: 01/06/2020] [Indexed: 06/10/2023]
Abstract
Near-infrared (NIR) spectra are sensitive to the variation of water structure. In this work, NIR spectroscopy was used to investigate the variation of hydration water during the aggregation of R2/wt induced by heparin. The osmolytes, urea and trehalose, were used to slow down and speed up the aggregation. The spectra of R2/wt aqueous solution obtained by NIR spectroscopy at 37 °C were adopted to analyze the structure of water during the aggregation. The spectral features of different water species were observed by principal component analysis (PCA) from the resolution enhanced NIR spectra. The existence of the water molecules with one and two hydrogen bonds around the NH and CH groups of R2/wt, respectively, was suggested, and the variation of the hydrogen-bonded water was found to be an indicator to monitor the process of aggregation. Then, the variation of the water species during the aggregation was analyzed by two-dimensional correlation spectroscopy. The water hydrogen bonded with NH group was found to change earlier than the water around the hydrophobic groups. The results suggest that β-sheet forms though the hydrogen bonds of amide groups in the early stage of the aggregation, and the destruction of the hydrogen bond network of the water around the side chains maybe the main reason for the formation of the ordered amyloid fibers.
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Affiliation(s)
- Yan Sun
- Research Center for Analytical Sciences, College of Chemistry, Nankai University, Tianjin 300071, PR China; Tianjin Key Laboratory of Biosensing and Molecular Recognition, Tianjin 300071, PR China; State Key Laboratory of Medicinal Chemical Biology, Tianjin 300071, PR China
| | - Li Ma
- Research Center for Analytical Sciences, College of Chemistry, Nankai University, Tianjin 300071, PR China; Tianjin Key Laboratory of Biosensing and Molecular Recognition, Tianjin 300071, PR China; State Key Laboratory of Medicinal Chemical Biology, Tianjin 300071, PR China
| | - Wensheng Cai
- Research Center for Analytical Sciences, College of Chemistry, Nankai University, Tianjin 300071, PR China; Tianjin Key Laboratory of Biosensing and Molecular Recognition, Tianjin 300071, PR China; State Key Laboratory of Medicinal Chemical Biology, Tianjin 300071, PR China
| | - Xueguang Shao
- Research Center for Analytical Sciences, College of Chemistry, Nankai University, Tianjin 300071, PR China; Tianjin Key Laboratory of Biosensing and Molecular Recognition, Tianjin 300071, PR China; State Key Laboratory of Medicinal Chemical Biology, Tianjin 300071, PR China.
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23
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Sun Y, Cui X, Cai W, Shao X. Understanding the complexity of the structures in alcohol solutions by temperature-dependent near-infrared spectroscopy. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2020; 229:117864. [PMID: 31806476 DOI: 10.1016/j.saa.2019.117864] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/03/2019] [Revised: 11/05/2019] [Accepted: 11/25/2019] [Indexed: 05/13/2023]
Abstract
For understanding the structures and the hydrogen bonding in alcohol solutions, the changes of the structures and hydrogen bonding with temperature were studied by temperature-dependent near-infrared (NIR) spectroscopy. The spectral features of eight alcohol species including the monomer, dimer and linear or cyclic aggregates (trimer, tetramer and polymer) were found from the resolution-enhanced spectra calculated by continuous wavelet transform. The changes of the eight species with concentration and temperature were analyzed using the intensity variation of the corresponding spectral features and two-dimensional correlation NIR spectroscopy. The aggregates were found to form at a very low concentration and the stability of the seven aggregates with temperature was found in an order of cyclic tetramer > linear polymer > linear tetramer > cyclic trimer > linear trimer > cyclic polymer > dimer. Furthermore, the formation of the aggregates was found to be affected by the chain length. The increase of the chain length is beneficial for the formation of cyclic tetramer and polymer due to the hydrophobic effect, but is an adverse effect for the formation of linear polymer.
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Affiliation(s)
- Yan Sun
- Research Center for Analytical Sciences, College of Chemistry, Nankai University, Tianjin 300071, PR China; Tianjin Key Laboratory of Biosensing and Molecular Recognition, Tianjin 300071, PR China; State Key Laboratory of Medicinal Chemical Biology, Tianjin 300071, PR China
| | - Xiaoyu Cui
- Research Center for Analytical Sciences, College of Chemistry, Nankai University, Tianjin 300071, PR China; Tianjin Key Laboratory of Biosensing and Molecular Recognition, Tianjin 300071, PR China; State Key Laboratory of Medicinal Chemical Biology, Tianjin 300071, PR China
| | - Wensheng Cai
- Research Center for Analytical Sciences, College of Chemistry, Nankai University, Tianjin 300071, PR China; Tianjin Key Laboratory of Biosensing and Molecular Recognition, Tianjin 300071, PR China; State Key Laboratory of Medicinal Chemical Biology, Tianjin 300071, PR China
| | - Xueguang Shao
- Research Center for Analytical Sciences, College of Chemistry, Nankai University, Tianjin 300071, PR China; Tianjin Key Laboratory of Biosensing and Molecular Recognition, Tianjin 300071, PR China; State Key Laboratory of Medicinal Chemical Biology, Tianjin 300071, PR China.
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Guselnikova O, Trelin A, Skvortsova A, Ulbrich P, Postnikov P, Pershina A, Sykora D, Svorcik V, Lyutakov O. Label-free surface-enhanced Raman spectroscopy with artificial neural network technique for recognition photoinduced DNA damage. Biosens Bioelectron 2019; 145:111718. [PMID: 31561094 DOI: 10.1016/j.bios.2019.111718] [Citation(s) in RCA: 28] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/27/2019] [Revised: 09/13/2019] [Accepted: 09/19/2019] [Indexed: 01/09/2023]
Abstract
Taking advantage of surface-enhanced Raman scattering (SERS) methodology with its unique ability to collect abundant intrinsic fingerprint information and noninvasive data acquisition we set up a SERS-based approach for recognition of physically induced DNA damage with further incorporation of artificial neural network (ANN). As a proof-of-concept application, we used the DNA molecules, where the one oligonucleotide (OND) was grafted to the plasmonic surface while complimentary OND was exposed to UV illumination with various exposure doses and further hybridized with the grafted counterpart. All SERS spectra of entrapped DNA were collected by several operators using the portable spectrometer, without any optimization of measurements procedure (e.g., optimization of acquisition time, laser intensity, finding of optimal place on substrate, manual baseline correction, etc.) which usually takes a significant amount of operator's time. The SERS spectra were employed as input data for ANN training, and the performance of the system was verified by predicting the class labels for SERS validation data, using a spectra dataset, which has not been involved in the training process. During that phase, accuracy higher than 98% was achieved with a level of confidence exceeding 95%. It should be noted that utilization of the proposed functional-SERS/ANN approach allows identifying even the minor DNA damage, almost invisible by control measurements, performed with common analytical procedures. Moreover, we introduce the advanced ANN design, which allows not only classifying the samples but also providing the ANN analysis feedback, which associates the spectral changes and chemical transformations of DNA structure.
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Affiliation(s)
- O Guselnikova
- Department of Solid State Engineering, University of Chemistry and Technology, 16628, Prague, Czech Republic; Research School of Chemistry and Applied Biomedical Sciences, Tomsk Polytechnic University, 634049, Tomsk, Russian Federation
| | - A Trelin
- Department of Solid State Engineering, University of Chemistry and Technology, 16628, Prague, Czech Republic
| | - A Skvortsova
- Department of Solid State Engineering, University of Chemistry and Technology, 16628, Prague, Czech Republic
| | - P Ulbrich
- Department of Biochemistry and Microbiology, University of Chemistry and Technology, 16628, Prague, Czech Republic
| | - P Postnikov
- Department of Solid State Engineering, University of Chemistry and Technology, 16628, Prague, Czech Republic; Research School of Chemistry and Applied Biomedical Sciences, Tomsk Polytechnic University, 634049, Tomsk, Russian Federation
| | - A Pershina
- Research School of Chemistry and Applied Biomedical Sciences, Tomsk Polytechnic University, 634049, Tomsk, Russian Federation; Siberian State Medical University, 2, Moskovsky Trakt, 634050, Tomsk, Russia
| | - D Sykora
- Department of Analytical Chemistry, University of Chemistry and Technology, 16628, Prague, Czech Republic
| | - V Svorcik
- Department of Solid State Engineering, University of Chemistry and Technology, 16628, Prague, Czech Republic
| | - O Lyutakov
- Department of Solid State Engineering, University of Chemistry and Technology, 16628, Prague, Czech Republic; Research School of Chemistry and Applied Biomedical Sciences, Tomsk Polytechnic University, 634049, Tomsk, Russian Federation.
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Muncan J, Tsenkova R. Aquaphotomics-From Innovative Knowledge to Integrative Platform in Science and Technology. Molecules 2019; 24:molecules24152742. [PMID: 31357745 PMCID: PMC6695961 DOI: 10.3390/molecules24152742] [Citation(s) in RCA: 55] [Impact Index Per Article: 11.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/30/2019] [Revised: 07/25/2019] [Accepted: 07/26/2019] [Indexed: 11/16/2022] Open
Abstract
Aquaphotomics is a young scientific discipline based on innovative knowledge of water molecular network, which as an intrinsic part of every aqueous system is being shaped by all of its components and the properties of the environment. With a high capacity for hydrogen bonding, water molecules are extremely sensitive to any changes the system undergoes. In highly aqueous systems-especially biological-water is the most abundant molecule. Minute changes in system elements or surroundings affect multitude of water molecules, causing rearrangements of water molecular network. Using light of various frequencies as a probe, the specifics of water structure can be extracted from the water spectrum, indirectly providing information about all the internal and external elements influencing the system. The water spectral pattern hence becomes an integrative descriptor of the system state. Aquaphotomics and the new knowledge of water originated from the field of near infrared spectroscopy. This technique resulted in significant findings about water structure-function relationships in various systems contributing to a better understanding of basic life phenomena. From this foundation, aquaphotomics started integration with other disciplines into systematized science from which a variety of applications ensued. This review will present the basics of this emerging science and its technological potential.
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Affiliation(s)
- Jelena Muncan
- Biomedical Engineering Department, Faculty of Mechanical Engineering, University of Belgrade, 11000 Belgrade, Serbia
- Biomeasurement Technology Laboratory, Graduate School of Agricultural Science, Kobe University, Hyogo 657-8501, Japan
| | - Roumiana Tsenkova
- Biomeasurement Technology Laboratory, Graduate School of Agricultural Science, Kobe University, Hyogo 657-8501, Japan.
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Shao X, Cui X, Wang M, Cai W. High order derivative to investigate the complexity of the near infrared spectra of aqueous solutions. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2019; 213:83-89. [PMID: 30684883 DOI: 10.1016/j.saa.2019.01.059] [Citation(s) in RCA: 26] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/04/2018] [Revised: 12/19/2018] [Accepted: 01/15/2019] [Indexed: 06/09/2023]
Abstract
Derivative calculation is a powerful method for resolution enhancement in spectral analysis. A high order derivative method based on continuous wavelet transform (CWT) is discussed in the analysis of near infrared (NIR) spectra. The results for a simulated spectrum obtained from conventional numerical differentiation (NM), Fourier transform (FT), Savitzky-Golay (SG) and CWT method were compared. CWT method was found to be as efficient as FT and SG, but easier for high order derivative computation, and the fourth order derivative was proved to be a good choice for resolution enhancement as well as reduction of noise and sidelobe effects. For the NIR spectra of water-ethanol mixtures, the complexity of the spectra can be observed from the fourth derivative, including the spectral features of OH and CH with various intermolecular interactions. Fitting the derivative spectra of the mixtures by those of pure water and ethanol, the obtained coefficients for ethanol show a linear relation with the content but that for water exhibit a non-linear relation, which reveals the influence of ethanol on water structure in the mixture. Furthermore, the information of the water-ethanol clusters was found in the residual spectra after the fitting. Therefore, high order derivative can be an efficient way to improve the resolution of NIR spectra for understanding the interactions in aqueous solutions.
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Affiliation(s)
- Xueguang Shao
- Xinjiang Laboratory of Native Medicinal and Edible Plant Resources Chemistry, College of Chemistry and Environmental Science, Kashgar University, Kashgar 844006, China; Research Center for Analytical Sciences, College of Chemistry, Nankai University. Tianjin 300071, China; Tianjin Key Laboratory of Biosensing and Molecular Recognition, Tianjin 300071, China; State Key Laboratory of Medicinal Chemical Biology, Tianjin 300071, China; Collaborative Innovation Center of Chemical Science and Engineering (Tianjin), Tianjin 300071, China.
| | - Xiaoyu Cui
- Research Center for Analytical Sciences, College of Chemistry, Nankai University. Tianjin 300071, China
| | - Mian Wang
- Research Center for Analytical Sciences, College of Chemistry, Nankai University. Tianjin 300071, China
| | - Wensheng Cai
- Research Center for Analytical Sciences, College of Chemistry, Nankai University. Tianjin 300071, China
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27
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Mitsiogianni M, Amery T, Franco R, Zoumpourlis V, Pappa A, Panayiotidis MI. From chemo-prevention to epigenetic regulation: The role of isothiocyanates in skin cancer prevention. Pharmacol Ther 2018; 190:187-201. [DOI: 10.1016/j.pharmthera.2018.06.001] [Citation(s) in RCA: 20] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
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28
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Tsenkova R, Munćan J, Pollner B, Kovacs Z. Essentials of Aquaphotomics and Its Chemometrics Approaches. Front Chem 2018; 6:363. [PMID: 30211151 PMCID: PMC6121091 DOI: 10.3389/fchem.2018.00363] [Citation(s) in RCA: 67] [Impact Index Per Article: 11.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/15/2018] [Accepted: 07/30/2018] [Indexed: 01/13/2023] Open
Abstract
Aquaphotomics is a novel scientific discipline involving the study of water and aqueous systems. Using light-water interaction, it aims to extract information about the structure of water, composed of many different water molecular conformations using their absorbance bands. In aquaphotomics analysis, specific water structures (presented as water absorbance patterns) are related to their resulting functions in the aqueous systems studied, thereby building an aquaphotome-a database of water absorbance bands and patterns correlating specific water structures to their specific functions. Light-water interaction spectroscopic methods produce complex multidimensional spectral data, which require data processing and analysis to extract hidden information about the structure of water presented by its absorbance bands. The process of extracting information from water spectra in aquaphotomics requires a field-specific approach. It starts with an appropriate experimental design and execution to ensure high-quality spectral signals, followed by a multitude of spectral analysis, preprocessing and chemometrics methods to remove unwanted influences and extract water absorbance spectral pattern related to the perturbation of interest through the identification of activated water absorbance bands found among the common, consistently repeating and highly influential variables in all analytical models. The objective of this paper is to introduce the field of aquaphotomics and describe aquaphotomics multivariate analysis methodology developed during the last decade. Through a worked-out example of analysis of potassium chloride solutions supported by similar approaches from the existing aquaphotomics literature, the provided instruction should give enough information about aquaphotomics analysis i.e. to design and perform the experiment and data analysis as well as to represent water absorbance spectral pattern using various forms of aquagrams-specifically designed aquaphotomics graphs. The explained methodology is derived from analysis of near infrared spectral data of aqueous systems and will offer a useful and new tool for extracting data from informationally rich water spectra in any region. It is the hope of the authors that with this new tool at the disposal of scientists and chemometricians, pharmaceutical and biomedical spectroscopy will substantially progress beyond its state-of-the-art applications.
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Affiliation(s)
- Roumiana Tsenkova
- Biomeasurement Technology Laboratory, Graduate School of Agricultural Science, Kobe University, Kobe, Japan
| | - Jelena Munćan
- Biomeasurement Technology Laboratory, Graduate School of Agricultural Science, Kobe University, Kobe, Japan
- Nanolab, Biomedical Engineering Department, Faculty of Mechanical Engineering, University of Belgrade, Belgrade, Serbia
| | - Bernhard Pollner
- Department for Hygiene and Medical Microbiology, Medical University of Innsbruck, Innsbruck, Austria
| | - Zoltan Kovacs
- Department of Physics and Control, Faculty of Food Science, Szent István University, Budapest, Hungary
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29
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Ma L, Cui X, Cai W, Shao X. Understanding the function of water during the gelation of globular proteins by temperature-dependent near infrared spectroscopy. Phys Chem Chem Phys 2018; 20:20132-20140. [PMID: 30027956 DOI: 10.1039/c8cp01431k] [Citation(s) in RCA: 30] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Water plays an indispensable role in the gelation of proteins, but its function still remains unclear. In this work, the variation of water species with the structural changes of globular proteins was investigated using temperature-dependent near infrared (NIR) spectroscopy. Ovalbumin (OVA) was used as a model protein, which forms a gel-like structure as the temperature increases through three phases, i.e., phase I (native), phase II (molten globule state), and phase III (gel state). The structural change and the content variation of different water species in the three phases of gelation were analyzed by two-dimensional correlation NIR spectroscopy and Gaussian fitting. A decrease in the water species with two hydrogen bonds (S2) was found and the change follows the same phases as OVA. In the first two phases, the change occurs after those of other water species but in the third phase, the change is faster than that of free water species. The result indicates that in the native and molten globule states, S2 is located in the hydration shell of OVA to maintain the stability of the protein structure, and then in the gel state, high temperature weakens the hydrogen bonding of S2 and leads to the destruction of the hydration shell, making OVA clusters form a gel structure.
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Affiliation(s)
- Li Ma
- Research Center for Analytical Sciences, College of Chemistry, Nankai University, Tianjin 300071, P. R. China.
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30
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Kunisada M, Yamano N, Hosaka C, Takemori C, Nishigori C. Inflammation Due to Voriconazole-induced Photosensitivity Enhanced Skin Phototumorigenesis in Xpa-knockout Mice. Photochem Photobiol 2018; 94:1077-1081. [PMID: 29968917 DOI: 10.1111/php.12972] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/06/2018] [Accepted: 06/21/2018] [Indexed: 12/31/2022]
Abstract
Voriconazole is an antifungal agent and used as a prophylactic measure, especially in immunocompromised patients. However, there have been several reports of its adverse reactions, namely photosensitivity with intense inflammatory rashes and subsequent skin cancer development. To assess the effects of photosensitizing drugs voriconazole and hydrochlorothiazide (HCTZ) on the enhancement of UV-induced inflammatory responses and UV-induced tumorigenesis, we utilized Xpa-knockout mice, which is DNA repair-deficient and more susceptible to UV-induced inflammation and tumor development than wild-type mice. Administration of voriconazole prior to broadband UVB exposure significantly upregulated multiple inflammatory cytokines compared with the vehicle- or HCTZ-administered groups. Voriconazole administration along with chronic UVB exposure produced significantly higher number of skin tumors than HCTZ or vehicle in Xpa-knockout mice. Furthermore, the investigation of UVB-induced DNA damage using embryonic fibroblasts of Xpa-knockout mice revealed a significantly higher 8-oxo-7,8-dihydroguanine level in cells treated with voriconazole N-oxide, a voriconazole-metabolite during UV exposure. The data suggest that voriconazole plus UVB-induced inflammatory response may be related to voriconazole-induced skin phototumorigenesis.
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Affiliation(s)
- Makoto Kunisada
- Division of Dermatology, Department of Internal Related, Kobe University Graduate School of Medicine, Kobe, Japan
| | - Nozomi Yamano
- Division of Dermatology, Department of Internal Related, Kobe University Graduate School of Medicine, Kobe, Japan
| | - Chieko Hosaka
- Division of Dermatology, Department of Internal Related, Kobe University Graduate School of Medicine, Kobe, Japan
| | - Chihiro Takemori
- Division of Dermatology, Department of Internal Related, Kobe University Graduate School of Medicine, Kobe, Japan
| | - Chikako Nishigori
- Division of Dermatology, Department of Internal Related, Kobe University Graduate School of Medicine, Kobe, Japan
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31
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Singh S, Singh MK, Das P. Visual detection of cyclobutane pyrimidine dimer DNA damage lesions by Hg 2+ and carbon dots. Anal Chim Acta 2018. [PMID: 29534804 DOI: 10.1016/j.aca.2018.02.029] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
Abstract
Cyclobutane pyrimidine dimmers (CPDs) and 6-4-[pyrimidine-2'-one] pyrimidine (6-4 PP) are major UV induced DNA damage lesions formed from solar radiation and other sources. CPD lesions are presumably mutagenic and carcinogenic that inhibit polymerases and interfere in DNA replication. An easy and cost effective way for visual detection of these lesions by using fluorescence based method is shown here. Artificial UVA and UVB lights were used for the generation of CPD and 6-4 PPs in selected DNA samples. Binding of Hg2+ ions with DNA before and after induction of CPD and 6-4 PP lesions was evaluated in the presence of highly fluorescent blue emitting carbon dots (CDs). Induction of CPD and 6-4 PPs in DNA causes distortion of DNA structure which hinders the binding of Hg2+ ions to DNA nucleobases. Quenching of fluorescence intensity of CDs by unbound Hg2+ ions was found to be proportional to the amount of CPD and 6-4 PP lesions induced by UV irradiation of DNA samples that offer a biosensing platform for the sensitive detection of CPD lesions in DNA. The fluorescent quenching was visually detectable using hand held UV light without the intervention of any equipment.
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Affiliation(s)
- Seema Singh
- Department of Chemistry, Indian Institute of Technology Patna, Patna, 801106, Bihar, India
| | - Manoj K Singh
- Atomic and Molecular Physics Division, Bhabha Atomic Research Centre, Mumbai, 400085, India
| | - Prolay Das
- Department of Chemistry, Indian Institute of Technology Patna, Patna, 801106, Bihar, India.
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32
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Wenz JJ. Examining water in model membranes by near infrared spectroscopy and multivariate analysis. BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES 2017; 1860:673-682. [PMID: 29229525 DOI: 10.1016/j.bbamem.2017.12.007] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/18/2017] [Revised: 11/23/2017] [Accepted: 12/07/2017] [Indexed: 11/30/2022]
Abstract
By exploiting the sensitivity of the NIR spectrum, particularly the first overtone of water, to the number and strength of hydrogen bonds, the hydrogen bond network and water polymerization in membranes of DMPA (1,2-dimyristoyl-sn-glycero-3-phosphate) and DMPC (1,2-dimyristoyl-sn-glycero-3-phosphocholine) was investigated as a function of the temperature and the presence of this two phospholipids having the same tail but different polar head. Principal components analysis performed on the spectra was used to disclose subtle spectral changes that mirror the alteration of the vibrational energy of the water O-H bonds, as a measure of the H-bond network. Temperature showed a dominating effect on the H-bond network. Increasing temperatures diminished the number of strongly H-bonded water molecules and increased the number of weakly H-bonded waters. This main effect of temperature was missing after the subtraction of the pure water spectra from the lipid-containing ones. An intriguing secondary effect of temperature was also revealed. Phospholipids exhibited an effect qualitatively similar to that of the temperature. DMPA, and particularly DMPC, disrupted the H-bond network in the neighboring lipid-water interface, reducing water polymerization and strengthening the water O-H bonds. The type of the polar head affects the H-bonds more than duplicate the concentration of the lipid. A connection between head group structure and the effect on the H-bonds network, and the existence of two populations of water molecules are discussed.
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Affiliation(s)
- Jorge J Wenz
- Instituto de Investigaciones Bioquímicas de Bahía Blanca, Universidad Nacional del Sur (UNS)-CONICET, Bahía Blanca, Argentina; Departamento de Biología, Bioquímica y Farmacia, UNS, Bahía Blanca, Argentina..
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33
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Cho BO, Che DN, Shin JY, Kang HJ, Kim JH, Kim HY, Cho WG, Jang SI. Ameliorative effects of Diospyros lotus leaf extract against UVB-induced skin damage in BALB/c mice. Biomed Pharmacother 2017; 95:264-274. [DOI: 10.1016/j.biopha.2017.07.159] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/11/2017] [Revised: 07/10/2017] [Accepted: 07/30/2017] [Indexed: 11/17/2022] Open
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Zamarrón A, García M, Río MD, Larcher F, Juarranz Á. Effects of photodynamic therapy on dermal fibroblasts from xeroderma pigmentosum and Gorlin-Goltz syndrome patients. Oncotarget 2017; 8:77385-77399. [PMID: 29100394 PMCID: PMC5652786 DOI: 10.18632/oncotarget.20485] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/10/2017] [Accepted: 07/26/2017] [Indexed: 12/22/2022] Open
Abstract
PDT is widely applied for the treatment of non-melanoma skin cancer pre-malignant and malignant lesions (actinic keratosis, basal cell carcinoma and in situ squamous cell carcinoma). In photodynamic therapy (PDT) the interaction of a photosensitizer (PS), light and oxygen leads to the formation of reactive oxygen species (ROS) and thus the selective tumor cells eradication. Xeroderma pigmentosum (XP) and Gorlin-Goltz Syndrome (GS) patients are at high risk of developing skin cancer in sun-exposed areas. Therefore, the use of PDT as a preventive treatment may constitute a very promising therapeutic modality for these syndromes. Given the demonstrated role of cancer associated fibroblasts (CAFs) in tumor progression and the putative CAFs features of some cancer-prone genodermatoses fibroblasts, in this study, we have further characterized the phenotype of XP and GS dermal fibroblasts and evaluated their response to methyl-δ-aminolevulinic acid (MAL)-PDT compared to that of dermal fibroblasts obtained from healthy donors. We show here that XP/GS fibroblasts display clear features of CAFs and present a significantly higher response to PDT, even after being stimulated with UV light, underscoring the value of this therapeutic approach for these rare skin conditions and likely to other forms of skin cancer were CAFs play a major role.
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Affiliation(s)
- Alicia Zamarrón
- Department of Biology, Faculty of Sciences, Autónoma University of Madrid, IRYCIS, Madrid, Spain
| | - Marta García
- Department of Bioengineering, Carlos III University (UC3M), Madrid, Spain
- CIEMAT-Centro de Investigaciones Biomédicas en Red de Enfermedades Raras (CIBERER), Madrid, Spain
- Instituto de Investigación Sanitaria de la Fundación Jiménez Díaz (IIS-FJD), Madrid, Spain
| | - Marcela Del Río
- Department of Bioengineering, Carlos III University (UC3M), Madrid, Spain
- CIEMAT-Centro de Investigaciones Biomédicas en Red de Enfermedades Raras (CIBERER), Madrid, Spain
- Instituto de Investigación Sanitaria de la Fundación Jiménez Díaz (IIS-FJD), Madrid, Spain
| | - Fernando Larcher
- Department of Bioengineering, Carlos III University (UC3M), Madrid, Spain
- CIEMAT-Centro de Investigaciones Biomédicas en Red de Enfermedades Raras (CIBERER), Madrid, Spain
- Instituto de Investigación Sanitaria de la Fundación Jiménez Díaz (IIS-FJD), Madrid, Spain
| | - Ángeles Juarranz
- Department of Biology, Faculty of Sciences, Autónoma University of Madrid, IRYCIS, Madrid, Spain
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35
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UV Radiation Protection by Thermal Plasma Synthesized Zinc Oxide Nanosheets. J Inorg Organomet Polym Mater 2017. [DOI: 10.1007/s10904-017-0568-y] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
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36
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Water Bridging Dynamics of Polymerase Chain Reaction in the Gauge Theory Paradigm of Quantum Fields. WATER 2017. [DOI: 10.3390/w9050339] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
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37
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Affiliation(s)
- Roumiana Tsenkova
- Professor at Kobe University, Biomeasurement Technology Laboratory, Visiting Professor at Keio University Medical Faculty, Tokyo, Japan
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38
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Water Properties of Soft Contact Lenses: A Comparative Near-Infrared Study of Two Hydrogel Materials. INT J POLYM SCI 2016. [DOI: 10.1155/2016/3737916] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/02/2023] Open
Abstract
The functionality of soft contact lenses depends strongly on the water content and their water-transport ability. This study was conducted in order to examine the state of water in two sets of soft contact lenses: VSO38, pHEMA Filcon I 1, and VSO50, copolymer of HEMA and VP Filcon II 1 (HEMA = 2-hydroxy-ethyl methacrylate; VP = vinyl pyrrolidone). Hydrogel lenses were studied using near-infrared spectroscopy and the novel Aquaphotomics approach in order to determine the state of water in materials based on their near-infrared spectra. Aquaphotomics approach investigates absorption at specific vibrational bands of water’s covalent and hydrogen bonds which can provide information on how the water structure changes with the structural change of the polymer network. Principal component analysis and specific star-chart “aquagram” were used to analyse water spectral pattern in hydrogel materials. The findings show that material VSO38 has water predominantly organized in bound state, while material with higher water content, VSO50, has more free and weakly hydrogen bonded water. Our findings define in detail exact water species existing and interacting with the polymer network. The results show qualitative and quantitative possibilities of Aquaphotomics for better modelling and understanding water behaviour in hydrogel materials.
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39
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Water revealed as molecular mirror when measuring low concentrations of sugar with near infrared light. Anal Chim Acta 2015; 896:52-62. [DOI: 10.1016/j.aca.2015.09.014] [Citation(s) in RCA: 47] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/15/2015] [Revised: 08/25/2015] [Accepted: 09/06/2015] [Indexed: 11/16/2022]
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