1
|
Massalha L, Levin AR, Adiram-Filiba N, Golub E. Selective binding of c-MYC G-quadruplex caged in a dsDNA by a hemopeptide. Chem Commun (Camb) 2024. [PMID: 38973676 DOI: 10.1039/d4cc01389a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/09/2024]
Abstract
The microperoxidase-11 hemopeptide exhibits configuration-dependent selectivity for guanine-quadruplexes by specifically uncaging c-MYC guanine-quadruplexes from a duplex DNA.
Collapse
Affiliation(s)
- Leen Massalha
- Department of Chemistry, Faculty of Exact Sciences and Institute of Nanotechnology and Advanced Materials, Bar Ilan University, 5290002, Israel.
| | - Adiel Richter Levin
- Department of Chemistry, Faculty of Exact Sciences and Institute of Nanotechnology and Advanced Materials, Bar Ilan University, 5290002, Israel.
| | - Nurit Adiram-Filiba
- Department of Chemistry, Faculty of Exact Sciences and Institute of Nanotechnology and Advanced Materials, Bar Ilan University, 5290002, Israel.
| | - Eyal Golub
- Department of Chemistry, Faculty of Exact Sciences and Institute of Nanotechnology and Advanced Materials, Bar Ilan University, 5290002, Israel.
| |
Collapse
|
2
|
Dent MR, Rose JJ, Tejero J, Gladwin MT. Carbon Monoxide Poisoning: From Microbes to Therapeutics. Annu Rev Med 2024; 75:337-351. [PMID: 37582490 PMCID: PMC11160397 DOI: 10.1146/annurev-med-052422-020045] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/17/2023]
Abstract
Carbon monoxide (CO) poisoning leads to 50,000-100,000 emergency room visits and 1,500-2,000 deaths each year in the United States alone. Even with treatment, survivors often suffer from long-term cardiac and neurocognitive deficits, highlighting a clear unmet medical need for novel therapeutic strategies that reduce morbidity and mortality associated with CO poisoning. This review examines the prevalence and impact of CO poisoning and pathophysiology in humans and highlights recent advances in therapeutic strategies that accelerate CO clearance and mitigate toxicity. We focus on recent developments of high-affinity molecules that take advantage of the uniquely strong interaction between CO and heme to selectively bind and sequester CO in preclinical models. These scavengers, which employ heme-binding scaffolds ranging from organic small molecules to hemoproteins derived from humans and potentially even microorganisms, show promise as field-deployable antidotes that may rapidly accelerate CO clearance and improve outcomes for survivors of acute CO poisoning.
Collapse
Affiliation(s)
- Matthew R Dent
- Heart, Lung, Blood and Vascular Medicine Institute, University of Pittsburgh, Pittsburgh, Pennsylvania, USA; ,
| | - Jason J Rose
- Department of Medicine, University of Maryland School of Medicine, Baltimore, Maryland, USA; ,
| | - Jesús Tejero
- Heart, Lung, Blood and Vascular Medicine Institute, University of Pittsburgh, Pittsburgh, Pennsylvania, USA; ,
- Division of Pulmonary, Allergy and Critical Care Medicine, University of Pittsburgh, Pittsburgh, Pennsylvania, USA
- Department of Bioengineering, Swanson School of Engineering, University of Pittsburgh, Pittsburgh, Pennsylvania, USA
- Department of Pharmacology and Chemical Biology, University of Pittsburgh, Pittsburgh, Pennsylvania, USA
| | - Mark T Gladwin
- Department of Medicine, University of Maryland School of Medicine, Baltimore, Maryland, USA; ,
| |
Collapse
|
3
|
Polaczek J, Kieca K, Oszajca M, Impert O, Katafias A, Chatterjee D, Ćoćić D, Puchta R, Stochel G, Hubbard CD, van Eldik R. A Personal Account on Inorganic Reaction Mechanisms. CHEM REC 2023:e202300278. [PMID: 37821418 DOI: 10.1002/tcr.202300278] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/16/2023] [Revised: 09/22/2023] [Indexed: 10/13/2023]
Abstract
The presented Review is focused on the latest research in the field of inorganic chemistry performed by the van Eldik group and his collaborators. The first part of the manuscript concentrates on the interaction of nitric oxide and its derivatives with biologically important compounds. We summarized mechanistic information on the interaction between model porphyrin systems (microperoxidase) and NO as well as the recent studies on the formation of nitrosylcobalamin (CblNO). The following sections cover the characterization of the Ru(II)/Ru(III) mixed-valence ion-pair complexes, including Ru(II)/Ru(III)(edta) complexes. The last part concerns the latest mechanistic information on the DFT techniques applications. Each section presents the most important results with the mechanistic interpretations.
Collapse
Affiliation(s)
- Justyna Polaczek
- Faculty of Chemistry, Jagiellonian University, Gronostajowa 2, 30-387, Kraków, Poland
| | - Konrad Kieca
- Faculty of Chemistry, Jagiellonian University, Gronostajowa 2, 30-387, Kraków, Poland
- Jagiellonian University, Doctoral School of Exact and Natural Sciences, Kraków, 30-348, Krakow, Poland
| | - Maria Oszajca
- Faculty of Chemistry, Jagiellonian University, Gronostajowa 2, 30-387, Kraków, Poland
| | - Olga Impert
- Faculty of Chemistry, Nicolaus Copernicus University in Torun, Gagarina 7, 87-100, Torun, Poland
| | - Anna Katafias
- Faculty of Chemistry, Nicolaus Copernicus University in Torun, Gagarina 7, 87-100, Torun, Poland
| | - Debabrata Chatterjee
- Faculty of Chemistry, Nicolaus Copernicus University in Torun, Gagarina 7, 87-100, Torun, Poland
- Vice-Chancellor's Research Group, Zoology Department, University of Burdwan, Burdwan, 713104, India
| | - Dušan Ćoćić
- University of Kragujevac, Faculty of Science, Department of Chemistry, Radoja Domanovića 12, P. O. Box 60, 34000, Kragujevac, Serbia
| | - Ralph Puchta
- Department of Chemistry and Pharmacy, University of Erlangen-Nuremberg, Egerlandstrasse 1, 91058, Erlangen, Germany
- Central Institute for Scientific Computing (CISC), University of Erlangen-Nuremberg, Martensstr. 5a, 91058, Erlangen, Germany
- Computer Chemistry Center, Department of Chemistry and Pharmacy, University of Erlangen-Nuremberg, Nägelsbachstr. 25, 91052, Erlangen, Germany
| | - Grażyna Stochel
- Faculty of Chemistry, Jagiellonian University, Gronostajowa 2, 30-387, Kraków, Poland
| | - Colin D Hubbard
- Department of Chemistry, University of New Hampshire, Durham, 03824, USA
| | - Rudi van Eldik
- Department of Chemistry and Pharmacy, University of Erlangen-Nuremberg, Egerlandstrasse 1, 91058, Erlangen, Germany
- Faculty of Chemistry, Nicolaus Copernicus University in Torun, Gagarina 7, 87-100, Torun, Poland
| |
Collapse
|
4
|
Marques HM. The inorganic chemistry of the cobalt corrinoids - an update. J Inorg Biochem 2023; 242:112154. [PMID: 36871417 DOI: 10.1016/j.jinorgbio.2023.112154] [Citation(s) in RCA: 8] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/07/2023] [Revised: 01/23/2023] [Accepted: 01/26/2023] [Indexed: 02/05/2023]
Abstract
The inorganic chemistry of the cobalt corrinoids, derivatives of vitamin B12, is reviewed, with particular emphasis on equilibrium constants for, and kinetics of, their axial ligand substitution reactions. The role the corrin ligand plays in controlling and modifying the properties of the metal ion is emphasised. Other aspects of the chemistry of these compounds, including their structure, corrinoid complexes with metals other than cobalt, the redox chemistry of the cobalt corrinoids and their chemical redox reactions, and their photochemistry are discussed. Their role as catalysts in non-biological reactions and aspects of their organometallic chemistry are briefly mentioned. Particular mention is made of the role that computational methods - and especially DFT calculations - have played in developing our understanding of the inorganic chemistry of these compounds. A brief overview of the biological chemistry of the B12-dependent enzymes is also given for the reader's convenience.
Collapse
Affiliation(s)
- Helder M Marques
- Molecular Sciences Institute, School of Chemistry, University of the Witwatersrand, Johannesburg 2050, South Africa.
| |
Collapse
|
5
|
Zhong F, Albert T, Moënne-Loccoz P, Pletneva EV. Influence of the Interdomain Interface on Structural and Redox Properties of Multiheme Proteins. Inorg Chem 2022; 61:20949-20963. [PMID: 36493379 PMCID: PMC11034829 DOI: 10.1021/acs.inorgchem.2c03427] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Abstract
Multiheme proteins are important in energy conversion and biogeochemical cycles of nitrogen and sulfur. A diheme cytochrome c4 (c4) was used as a model to elucidate roles of the interdomain interface on properties of iron centers in its hemes A and B. Isolated monoheme domains c4-A and c4-B, together with the full-length diheme c4 and its Met-to-His ligand variants, were characterized by a variety of spectroscopic and stability measurements. In both isolated domains, the heme iron is Met/His-ligated at pH 5.0, as in the full-length c4, but becomes His/His-ligated in c4-B at higher pH. Intradomain contacts in c4-A are minimally affected by the separation of c4-A and c4-B domains, and isolated c4-A is folded. In contrast, the isolated c4-B is partially unfolded, and the interface with c4-A guides folding of this domain. The c4-A and c4-B domains have the propensity to interact even without the polypeptide linker. Thermodynamic cycles have revealed properties of monomeric folded isolated domains, suggesting that ferrous (FeII), but not ferric (FeIII) c4-A and c4-B, is stabilized by the interface. This study illustrates the effects of the interface on tuning structural and redox properties of multiheme proteins and enriches our understanding of redox-dependent complexation.
Collapse
Affiliation(s)
- Fangfang Zhong
- Department of Chemistry, Dartmouth College, Hanover, NH 03755, United States
| | - Therese Albert
- Department of Chemical Physiology and Biochemistry, School of Medicine, Oregon Health & Science University, Portland, OR 97239, United States
| | - Pierre Moënne-Loccoz
- Department of Chemical Physiology and Biochemistry, School of Medicine, Oregon Health & Science University, Portland, OR 97239, United States
| | | |
Collapse
|
6
|
Koebke KJ, Pinter TBJ, Pitts WC, Pecoraro VL. Catalysis and Electron Transfer in De Novo Designed Metalloproteins. Chem Rev 2022; 122:12046-12109. [PMID: 35763791 PMCID: PMC10735231 DOI: 10.1021/acs.chemrev.1c01025] [Citation(s) in RCA: 15] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
One of the hallmark advances in our understanding of metalloprotein function is showcased in our ability to design new, non-native, catalytically active protein scaffolds. This review highlights progress and milestone achievements in the field of de novo metalloprotein design focused on reports from the past decade with special emphasis on de novo designs couched within common subfields of bioinorganic study: heme binding proteins, monometal- and dimetal-containing catalytic sites, and metal-containing electron transfer sites. Within each subfield, we highlight several of what we have identified as significant and important contributions to either our understanding of that subfield or de novo metalloprotein design as a discipline. These reports are placed in context both historically and scientifically. General suggestions for future directions that we feel will be important to advance our understanding or accelerate discovery are discussed.
Collapse
Affiliation(s)
- Karl J. Koebke
- Department of Chemistry, University of Michigan Ann Arbor, MI 48109 USA
| | | | - Winston C. Pitts
- Department of Chemistry, University of Michigan Ann Arbor, MI 48109 USA
| | | |
Collapse
|
7
|
Xie PC, Guo XQ, Yang FQ, Xu N, Chen YY, Wang XQ, Wang H, Yong YC. Cytochrome C catalyzed oxygen tolerant atom-transfer radical polymerization. BIORESOUR BIOPROCESS 2022; 9:41. [PMID: 38647739 PMCID: PMC10992558 DOI: 10.1186/s40643-022-00531-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/19/2022] [Accepted: 03/25/2022] [Indexed: 11/10/2022] Open
Abstract
Atom-transfer radical polymerization (ATRP) is a well-known technique for controlled polymer synthesis. However, the ATRP usually employed toxic heavy metal ionas as the catalyst and was susceptible to molecular oxygen, which made it should be conducted under strictly anoxic condition. Conducting ATRP under ambient and biocompatible conditions is the major challenge. In this study, cytochrome C was explored as an efficient biocatalyst for ATRP under biocompatible conditions. The cytochrome C catalyzed ATRP showed a relatively low polymer dispersity index of 1.19. More interestingly, the cytochrome C catalyzed ATRP showed superior oxygen resistance as it could be performed under aerobic conditions with high dissolved oxygen level. Further analysis suggested that the Fe(II) embed in the cytochrome C might serve as the catalytic center and methyl radical was responsible for the ATRP catalysis. This work explored new biocompatible catalyst for aerobic ATRP, which might open new dimension for practical ATRP and application of cytochrome C protein.
Collapse
Affiliation(s)
- Peng-Cheng Xie
- Biofuels Institute, School of Environment and Safety Engineering, Jiangsu University, 301 Xuefu Road, Zhenjiang, 212013, China
| | - Xue-Qing Guo
- Joint Institute of Jiangsu University-Hongrun Tech, Jiangsu University, 301 Xuefu Road, Zhenjiang, 212013, China
| | - Fu-Qiao Yang
- Biofuels Institute, School of Environment and Safety Engineering, Jiangsu University, 301 Xuefu Road, Zhenjiang, 212013, China
| | - Nuo Xu
- Biofuels Institute, School of Environment and Safety Engineering, Jiangsu University, 301 Xuefu Road, Zhenjiang, 212013, China
| | - Yuan-Yuan Chen
- Biofuels Institute, School of Environment and Safety Engineering, Jiangsu University, 301 Xuefu Road, Zhenjiang, 212013, China
| | - Xing-Qiang Wang
- Biofuels Institute, School of Environment and Safety Engineering, Jiangsu University, 301 Xuefu Road, Zhenjiang, 212013, China
| | - Hongcheng Wang
- Biofuels Institute, School of Environment and Safety Engineering, Jiangsu University, 301 Xuefu Road, Zhenjiang, 212013, China
| | - Yang-Chun Yong
- Biofuels Institute, School of Environment and Safety Engineering, Jiangsu University, 301 Xuefu Road, Zhenjiang, 212013, China.
- Joint Institute of Jiangsu University-Hongrun Tech, Jiangsu University, 301 Xuefu Road, Zhenjiang, 212013, China.
| |
Collapse
|
8
|
Wilson GS. Spectroelectrochemistry of Proteins. ELECTROANAL 2021. [DOI: 10.1002/elan.202100535] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Affiliation(s)
- George S. Wilson
- Department of Chemistry University of Kansas Lawrence, KS USA 1-66045
| |
Collapse
|
9
|
Oszajca M, Drabik G, Radoń M, Franke A, van Eldik R, Stochel G. Experimental and Computational Insight into the Mechanism of NO Binding to Ferric Microperoxidase. The Likely Role of Tautomerization to Account for the pH Dependence. Inorg Chem 2021; 60:15948-15967. [PMID: 34476946 DOI: 10.1021/acs.inorgchem.1c00933] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
According to the current paradigm, the metal-hydroxo bond in a six-coordinate porphyrin complex is believed to be significantly less reactive in ligand substitution than the analogous metal-aqua bond, due to a much higher strength of the former bond. Here, we report kinetic studies for nitric oxide (NO) binding to a heme-protein model, acetylated microperoxidase-11 (AcMP-11), that challenge this paradigm. In the studied pH range 7.4-12.6, ferric AcMP-11 exists in three acid-base forms, assigned in the literature as [(AcMP-11)FeIII(H2O)(HisH)] (1), [(AcMP-11)FeIII(OH)(HisH)] (2), and [(AcMP-11)FeIII(OH)(His-)] (3). From the pH dependence of the second-order rate constant for NO binding (kon), we determined individual rate constants characterizing forms 1-3, revealing only a ca. 10-fold decrease in the NO binding rate on going from 1 (kon(1) = 3.8 × 106 M-1 s-1) to 2 (kon(2) = 4.0 × 105 M-1 s-1) and the inertness of 3. These findings lead to the abandonment of the dissociatively activated mechanism, in which the reaction rate can be directly correlated with the Fe-OH bond energy, as the mechanistic explanation for the process with regard to 2. The reactivity of 2 is accounted for through the existence of a tautomeric equilibrium between the major [(AcMP-11)FeIII(OH)(HisH)] (2a) and minor [(AcMP-11)FeIII(H2O)(His-)] (2b) species, of which the second one is assigned as the NO binding target due to its labile Fe-OH2 bond. The proposed mechanism is further substantiated by quantum-chemical calculations, which confirmed both the significant labilization of the Fe-OH2 bond in the [(AcMP-11)FeIII(H2O)(His-)] tautomer and the feasibility of the tautomer formation, especially after introducing empirical corrections to the computed relative acidities of the H2O and HisH ligands based on the experimental pKa values. It is shown that the "effective lability" of the axial ligand (OH-/H2O) in 2 may be comparable to the lability of the H2O ligand in 1.
Collapse
Affiliation(s)
- Maria Oszajca
- Faculty of Chemistry, Jagiellonian University, Gronostajowa 2, 30-387 Krakow, Poland
| | - Gabriela Drabik
- Faculty of Chemistry, Jagiellonian University, Gronostajowa 2, 30-387 Krakow, Poland
| | - Mariusz Radoń
- Faculty of Chemistry, Jagiellonian University, Gronostajowa 2, 30-387 Krakow, Poland
| | - Alicja Franke
- Department of Chemistry, Ludwigs-Maximilians University, Butenandtstrasse 5-13, 81377 Munich, Germany
| | - Rudi van Eldik
- Faculty of Chemistry, Jagiellonian University, Gronostajowa 2, 30-387 Krakow, Poland.,Department of Chemistry and Pharmacy, University of Erlangen-Nuremberg, Egerlandstr. 1, 91058 Erlangen, Germany.,Faculty of Chemistry, Nicolaus Copernicus University in Torun, Gagarina 7, 87-100 Torun, Poland
| | - Grażyna Stochel
- Faculty of Chemistry, Jagiellonian University, Gronostajowa 2, 30-387 Krakow, Poland
| |
Collapse
|
10
|
Zhong F, Alden SL, Hughes RP, Pletneva EV. Comparing Properties of Common Bioinorganic Ligands with Switchable Variants of Cytochrome c. Inorg Chem 2021; 61:1207-1227. [PMID: 34699724 DOI: 10.1021/acs.inorgchem.1c02322] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Ligand substitution at the metal center is common in catalysis and signal transduction of metalloproteins. Understanding the effects of particular ligands, as well as the polypeptide surrounding, is critical for uncovering mechanisms of these biological processes and exploiting them in the design of bioinspired catalysts and molecular devices. A series of switchable K79G/M80X/F82C (X = Met, His, or Lys) variants of cytochrome (cyt) c was employed to directly compare the stability of differently ligated proteins and activation barriers for Met, His, and Lys replacement at the ferric heme iron. Studies of these variants and their nonswitchable counterparts K79G/M80X have revealed stability trends Met < Lys < His and Lys < His < Met for the protein FeIII-X and FeII-X species, respectively. The differences in the hydrogen-bonding interactions in folded proteins and in solvation of unbound X in the unfolded proteins explain these trends. Calculations of free energy of ligand dissociation in small heme model complexes reveal that the ease of the FeIII-X bond breaking increases in the series amine < imidazole < thioether, mirroring trends in hardness of these ligands. Experimental rate constants for X dissociation in differently ligated cyt c variants are consistent with this sequence, but the differences between Met and His dissociation rates are attenuated because the former process is limited by the heme crevice opening. Analyses of activation parameters and comparisons to those for the Lys-to-Met ligand switch in the alkaline transition suggest that ligand dissociation is entropically driven in all the variants and accompanied by Lys protonation at neutral pH. The described thiolate redox-linked switches have offered a wealth of new information about interactions of different protein-derived ligands with the heme iron in cyt c model proteins, and we anticipate that the strategy of employing these switches could benefit studies of other redox metalloproteins and model complexes.
Collapse
Affiliation(s)
- Fangfang Zhong
- Department of Chemistry, Dartmouth College, Hanover, New Hampshire 03755, United States
| | - Stephanie L Alden
- Department of Chemistry, Dartmouth College, Hanover, New Hampshire 03755, United States
| | - Russell P Hughes
- Department of Chemistry, Dartmouth College, Hanover, New Hampshire 03755, United States
| | - Ekaterina V Pletneva
- Department of Chemistry, Dartmouth College, Hanover, New Hampshire 03755, United States
| |
Collapse
|
11
|
Diz V, Bieza SA, Oviedo Rouco S, Estrin DA, Murgida DH, Bari SE. Reactivity of inorganic sulfide species towards a pentacoordinated heme model system. J Inorg Biochem 2021; 220:111459. [PMID: 33894504 DOI: 10.1016/j.jinorgbio.2021.111459] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/28/2020] [Revised: 03/30/2021] [Accepted: 04/03/2021] [Indexed: 02/07/2023]
Abstract
The reactivity of inorganic sulfide towards ferric bis(N-acetyl)- microperoxidase 11 in sodium dodecyl sulfate has been explored by means of visible absorption and resonance Raman spectroscopies. The reaction has been previously studied in buffered solutions at neutral pH and in the presence of excess sulfide, revealing the formation of a moderately stable hexacoordinated low spin ferric sulfide complex that yields the ferrous form in the hour's timescale. In the surfactant solution, instead, the ferrous form is rapidly formed. The spectroscopic characterization of the heme structure in the surfactant milieu revealed the stabilization of a major ferric mono-histidyl high spin heme, which may be ascribed to out of plane distortions prompting the detachment of the axially ligated water molecule, thus leading to a differential reactivity. The ferric bis(N-acetyl)- microperoxidase 11 in sodium dodecyl sulfate provides a model for pentacoordinated heme platforms with an imidazole-based ligand.
Collapse
Affiliation(s)
- Virginia Diz
- Universidad de Buenos Aires, Facultad de Ciencias Exactas y Naturales, Departamento de Química Inorgánica, Analítica y Química Física, Buenos Aires, Argentina
| | - Silvina A Bieza
- CONICET-Universidad de Buenos Aires, Instituto de Química Física de los Materiales, Medio Ambiente y Energía (INQUIMAE), Buenos Aires, Argentina
| | - Santiago Oviedo Rouco
- Universidad de Buenos Aires, Facultad de Ciencias Exactas y Naturales, Departamento de Química Inorgánica, Analítica y Química Física, Buenos Aires, Argentina; CONICET-Universidad de Buenos Aires, Instituto de Química Física de los Materiales, Medio Ambiente y Energía (INQUIMAE), Buenos Aires, Argentina
| | - Darío A Estrin
- Universidad de Buenos Aires, Facultad de Ciencias Exactas y Naturales, Departamento de Química Inorgánica, Analítica y Química Física, Buenos Aires, Argentina; CONICET-Universidad de Buenos Aires, Instituto de Química Física de los Materiales, Medio Ambiente y Energía (INQUIMAE), Buenos Aires, Argentina
| | - Daniel H Murgida
- Universidad de Buenos Aires, Facultad de Ciencias Exactas y Naturales, Departamento de Química Inorgánica, Analítica y Química Física, Buenos Aires, Argentina; CONICET-Universidad de Buenos Aires, Instituto de Química Física de los Materiales, Medio Ambiente y Energía (INQUIMAE), Buenos Aires, Argentina
| | - Sara E Bari
- CONICET-Universidad de Buenos Aires, Instituto de Química Física de los Materiales, Medio Ambiente y Energía (INQUIMAE), Buenos Aires, Argentina.
| |
Collapse
|
12
|
Porter J, Dit Fouque KJ, Miksovska J, Fernandez-Lima F. Salt bridges govern the structural heterogeneity of heme protein interactions and porphyrin networks: microperoxidase-11. RSC Adv 2020; 10:33861-33867. [PMID: 35519052 PMCID: PMC9056719 DOI: 10.1039/d0ra04956e] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/04/2020] [Accepted: 09/01/2020] [Indexed: 11/21/2022] Open
Abstract
In this work, a proteolytic digest of cytochrome c (microperoxidase 11, MP-11) was used as a model to study the structural aspects of heme protein interactions and porphyrin networks. The MP-11 structural heterogeneity was studied as a function of the starting pH (e.g., pH 3.1-6.1) and concentration (e.g., 1-50 μM) conditions and adduct coordination. Trapped ion mobility spectrometry coupled to mass spectrometry (TIMS-MS) showed the MP-11 structural dependence of the charge state distribution and molecular ion forms with the starting pH conditions. The singly charged (e.g., [M]+, [M - 2H + NH4]+, [M - H + Na]+ and [M - H + K]+) and doubly charged (e.g., [M + H]2+, [M - H + NH4]2+, [M + Na]2+ and [M + K]2+) molecular ion forms were observed for all solvent conditions, although the structural heterogeneity (e.g., number of mobility bands) significantly varied with the pH value and ion form. The MP-11 dimer formation as a model for heme-protein protein interactions showed that dimer formation is favored toward more neutral pH and favored when assisted by salt bridges (e.g., NH4 +, Na+ and K+ vs. H+). Inspection of the dimer mobility profiles (2+ and 3+ charge states) showed a high degree of structural heterogeneity as a function of the solution pH and ion form; the observation of common mobility bands suggest that the different salt bridges can stabilize similar structural motifs. In addition, the salt bridge influence on the MP-11 dimer formations was measured using collision induced dissociation and showed a strong dependence with the type of salt bridge (i.e., a CE50 of 10.0, 11.5, 11.8 and 13.0 eV was observed for [2M + H]3+, [2M - H + NH4]3+, [2M + Na]3+ and [2M + K]3+, respectively). Measurements of the dimer equilibrium constant showed that the salt bridge interactions increase the binding strength of the dimeric species.
Collapse
Affiliation(s)
- J Porter
- Department of Chemistry and Biochemistry, Florida International University Miami FL 33199 USA
| | - K Jeanne Dit Fouque
- Department of Chemistry and Biochemistry, Florida International University Miami FL 33199 USA
| | - J Miksovska
- Department of Chemistry and Biochemistry, Florida International University Miami FL 33199 USA
- Biomolecular Science Institute, Florida International University Miami FL 33199 USA
| | - F Fernandez-Lima
- Department of Chemistry and Biochemistry, Florida International University Miami FL 33199 USA
- Biomolecular Science Institute, Florida International University Miami FL 33199 USA
| |
Collapse
|
13
|
Electrochemical Biosensors Employing Natural and Artificial Heme Peroxidases on Semiconductors. SENSORS 2020; 20:s20133692. [PMID: 32630267 PMCID: PMC7374321 DOI: 10.3390/s20133692] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/04/2020] [Revised: 06/25/2020] [Accepted: 06/27/2020] [Indexed: 12/20/2022]
Abstract
Heme peroxidases are widely used as biological recognition elements in electrochemical biosensors for hydrogen peroxide and phenolic compounds. Various nature-derived and fully synthetic heme peroxidase mimics have been designed and their potential for replacing the natural enzymes in biosensors has been investigated. The use of semiconducting materials as transducers can thereby offer new opportunities with respect to catalyst immobilization, reaction stimulation, or read-out. This review focuses on approaches for the construction of electrochemical biosensors employing natural heme peroxidases as well as various mimics immobilized on semiconducting electrode surfaces. It will outline important advances made so far as well as the novel applications resulting thereof.
Collapse
|
14
|
Xia H, Li N, Zhong X, Jiang Y. Metal-Organic Frameworks: A Potential Platform for Enzyme Immobilization and Related Applications. Front Bioeng Biotechnol 2020; 8:695. [PMID: 32695766 PMCID: PMC7338372 DOI: 10.3389/fbioe.2020.00695] [Citation(s) in RCA: 54] [Impact Index Per Article: 13.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/09/2020] [Accepted: 06/03/2020] [Indexed: 12/21/2022] Open
Abstract
Enzymes, as natural catalysts with remarkable catalytic activity and high region-selectivities, hold great promise in industrial catalysis. However, applications of enzymatic transformation are hampered by the fragility of enzymes in harsh conditions. Recently, metal-organic frameworks (MOFs), due to their high stability and available structural properties, have emerged as a promising platform for enzyme immobilization. Synthetic strategies of enzyme-MOF composites mainly including surface immobilization, covalent linkage, pore entrapment and in situ synthesis. Compared with free enzymes, most immobilized enzymes exhibit enhanced resistance against solvents and high temperatures. Besides, MOFs serving as matrixes for enzyme immobilization show extraordinary superiority in many aspects compared with other supporting materials. The advantages of using MOFs to support enzymes are discussed. To obtain a high enzyme loading capacity and to reduce the diffusion resistance of reactants and products during the reaction, the mesoporous MOFs have been designed and constructed. This review also covers the applications of enzyme-MOF composites in bio-sensing and detection, bio-catalysis, and cancer therapy, which is concerned with interdisciplinary nano-chemistry, material science and medical chemistry. Finally, some perspectives on reservation or enhancement of bio-catalytic activity of enzyme-MOF composites and the future of enzyme immobilization strategies are discussed.
Collapse
Affiliation(s)
- Huan Xia
- School of Chemistry and Chemical Engineering, Guangdong Provincial Key Lab of Green Chemical Product Technology, South China University of Technology, Guangzhou, China
| | - Na Li
- School of Chemistry and Chemical Engineering, Guangdong Provincial Key Lab of Green Chemical Product Technology, South China University of Technology, Guangzhou, China
| | - Xue Zhong
- School of Chemistry and Chemical Engineering, Guangdong Provincial Key Lab of Green Chemical Product Technology, South China University of Technology, Guangzhou, China
| | - Yanbin Jiang
- School of Chemistry and Chemical Engineering, Guangdong Provincial Key Lab of Green Chemical Product Technology, South China University of Technology, Guangzhou, China
| |
Collapse
|
15
|
Foglia NO, Bari SE, Estrin DA. In Silico Insight into the Reductive Nitrosylation of Ferric Hemeproteins. Inorg Chem 2020; 59:3631-3641. [DOI: 10.1021/acs.inorgchem.9b03198] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]
Affiliation(s)
- Nicolás O. Foglia
- Universidad de Buenos Aires, Consejo Nacional de Investigaciones Científicas y Técnicas, Instituto de Quı́mica de los Materiales, Medio Ambiente y Energı́a, Facultad de Ciencias Exactas y Naturales, Buenos Aires, Argentina
- Universidad de Buenos Aires, Facultad de Ciencias Exactas y Naturales, Departamento de Quı́mica Inorgánica, Analı́tica y Quı́mica Fı́sica, Buenos Aires, Argentina
| | - Sara E. Bari
- Universidad de Buenos Aires, Consejo Nacional de Investigaciones Científicas y Técnicas, Instituto de Quı́mica de los Materiales, Medio Ambiente y Energı́a, Facultad de Ciencias Exactas y Naturales, Buenos Aires, Argentina
| | - Darío A. Estrin
- Universidad de Buenos Aires, Consejo Nacional de Investigaciones Científicas y Técnicas, Instituto de Quı́mica de los Materiales, Medio Ambiente y Energı́a, Facultad de Ciencias Exactas y Naturales, Buenos Aires, Argentina
- Universidad de Buenos Aires, Facultad de Ciencias Exactas y Naturales, Departamento de Quı́mica Inorgánica, Analı́tica y Quı́mica Fı́sica, Buenos Aires, Argentina
| |
Collapse
|
16
|
Yan J, Li Z, Liu M, Sun X, Ma L, Wang Z, Zhao Z, Huang X, Yuan L. Activity adaptability of a DhHP-6 peroxidase-mimic in wide pH and temperature ranges and solvent media. Catal Sci Technol 2020. [DOI: 10.1039/c9cy01855g] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Deuterohemin-β-Ala-His-Thr-Val-Glu-Lys (DhHp-6): peroxidase with high activity.
Collapse
Affiliation(s)
- Jiaqing Yan
- Key Laboratory for Molecular Enzymology and Engineering of Ministry of Education
- College of Life Science
- Jilin University
- Changchun 130012
- China
| | - Zhengqiang Li
- Key Laboratory for Molecular Enzymology and Engineering of Ministry of Education
- College of Life Science
- Jilin University
- Changchun 130012
- China
| | - Min Liu
- Hospital of Stomatology
- Jilin University
- Changchun
- China
| | - Xiaoli Sun
- Institute of Theoretical Chemistry
- Jilin University
- Changchun 130023
- China
| | - Li Ma
- Department of Physics
- Georgia Southern University
- Statesboro
- USA
| | - Zhi Wang
- Key Laboratory for Molecular Enzymology and Engineering of Ministry of Education
- College of Life Science
- Jilin University
- Changchun 130012
- China
| | - Zijian Zhao
- Institute of Agro-food Technology
- Jilin Academy of Agricultural Sciences
- Changchun
- China
| | - Xuri Huang
- Institute of Theoretical Chemistry
- Jilin University
- Changchun 130023
- China
| | - Long Yuan
- Key Laboratory of Functional Materials Physics and Chemistry of the Ministry of Education
- College of Physics
- Jilin Normal University
- Changchun 130103
- China
| |
Collapse
|
17
|
Deng Y, Weaver ML, Hoke KR, Pletneva EV. A Heme Propionate Staples the Structure of Cytochrome c for Methionine Ligation to the Heme Iron. Inorg Chem 2019; 58:14085-14106. [PMID: 31589413 DOI: 10.1021/acs.inorgchem.9b02111] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Ligand-switch reactions at the heme iron are common in biological systems, but their mechanisms and the features of the polypeptide fold that support dual ligation are not well understood. In cytochrome c (cyt c), two low-stability loops (Ω-loop C and Ω-loop D) are connected by the heme propionate HP6. At alkaline pH, the native Met80 ligand from Ω-loop D switches to a Lys residue from the same loop. Deprotonation of an as yet unknown group triggers the alkaline transition. We have created the two cyt c variants T49V/K79G and T78V/K79G with altered connections of these two loops to HP6. Electronic absorption, NMR, and EPR studies demonstrate that at pH 7.4 ferric forms of these variants are Lys-ligated, whereas ferrous forms maintain the native Met80 ligation. Measurements of protein stability, cyclic voltammetry, pH-jump and gated electron-transfer kinetics have revealed that these Thr to Val substitutions greatly affect the alkaline transition in both ferric and ferrous proteins. The substitutions modify the stability of the Met-ligated species and reduction potentials of the heme iron. The kinetics of ligand-switch processes are also altered, and analyses of these effects implicate redox-dependent differences in metal-ligand interactions and the role of the protein dynamics, including cross-talk between the two Ω-loops. With the two destabilized variants, it is possible to map energy levels for the Met- and Lys-ligated species in both ferric and ferrous proteins and assess the role of the protein scaffold in redox-dependent preferences for these two ligands. The estimated shift in the heme iron reduction potential upon deprotonation of the "trigger" group is consistent with those associated with deprotonation of an HP, suggesting that HP6, on its own or as a part of a hydrogen-bonded cluster, is a likely "trigger" for the Met to Lys ligand switch.
Collapse
Affiliation(s)
- Yunling Deng
- Department of Chemistry , Dartmouth College , Hanover , New Hampshire 03755 , United States
| | - Madeline L Weaver
- Department of Chemistry and Biochemistry , Berry College , Mount Berry , Georgia 30149 , United States
| | - Kevin R Hoke
- Department of Chemistry and Biochemistry , Berry College , Mount Berry , Georgia 30149 , United States
| | - Ekaterina V Pletneva
- Department of Chemistry , Dartmouth College , Hanover , New Hampshire 03755 , United States
| |
Collapse
|
18
|
Sajadimehr Y, Moosavi‐Movahedi Z, Haghighi MG, Miyardan AB, Nourisefat M, Moosavi‐Movahedi AA. Iron‐Porphyrin/Cysteine/PEG as Pseudo‐Chloroperoxidase Nanozyme. ChemistrySelect 2019. [DOI: 10.1002/slct.201901649] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/02/2023]
Affiliation(s)
- Yazdan Sajadimehr
- Chemistry and Chemical Engineering Research Center of Iran Tehran Iran
| | | | | | | | - Maryam Nourisefat
- Institute of Biochemistry and BiophysicsUniversity of Tehran Tehran Iran
| | | |
Collapse
|
19
|
Gkaniatsou E, Serre C, Mahy JP, Steunou N, Ricoux R, Sicard C. Enhancing microperoxidase activity and selectivity: immobilization in metal-organic frameworks. J PORPHYR PHTHALOCYA 2019. [DOI: 10.1142/s1088424619300106] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Abstract
Microperoxidases 8 (MP8) and 11 (MP11) are heme-containing peptides obtained by the proteolytic digestion of Cytochrome c. They act as mini-enzymes that combine both peroxidase-like and Cytochrome P450-like activities that may be useful in the synthesis of fine chemicals or in the degradation of environmental pollutants. However, their use is limited by their instability in solution due to (i) the bleaching of the heme in the presence of an excess of H2O2, (ii) the decoordination of the distal histidine ligand of the iron under acidic conditions and, (iii) their tendency to aggregate in aqueous alkaline solutions, even at low concentrations. Additionally, both MP8 and MP11 show relatively low selectivity, due to the lack of control of the substrates by a specific catalytic pocket on the distal face of the heme. Both stability and selectivity issues can be effectively addressed by immobilization of microperoxidases in solid matrices, which can also lead to their possible recycling from the reaction medium. Considering their relatively small size, the pore inclusion of MPs into Metal-Organic Frameworks appeared to be more adequate compared to other immobilization methods that have been widely investigated for decades. The present minireview describes the catalytic activities of MP8 and MP11, their limitations, and various results describing their immobilization into MOFs which led to MP11- or MP8@MOF hybrid materials that display good activity in the oxidation of dyes and phenol derivatives, with remarkable recyclability due to the stabilization of the MPs inside the MOF cavities. An example of selective oxidation of dyes according to their charge by MP8@MOF hybrid materials is also highlighted.
Collapse
Affiliation(s)
- Effrosyni Gkaniatsou
- Institut Lavoisier de Versailles, UVSQ, CNRS, Université Paris-Saclay, 45 Avenue des Etat-Unis, Versailles, France
| | - Christian Serre
- Institut des Matériaux Poreux de Paris, UMR-8004 CNRS-ENS-ESPCI, PSL Research University, 75005, Paris, France
| | - Jean-Pierre Mahy
- Laboratoire de Chimie Bioorganique et Bioinorganique, Institut de Chimie Moléculaire et des Matériaux d’Orsay, UMR 8182, Université Paris Sud, Université Paris-Saclay, 91405 Orsay Cedex, France
| | - Nathalie Steunou
- Institut Lavoisier de Versailles, UVSQ, CNRS, Université Paris-Saclay, 45 Avenue des Etat-Unis, Versailles, France
| | - Rémy Ricoux
- Laboratoire de Chimie Bioorganique et Bioinorganique, Institut de Chimie Moléculaire et des Matériaux d’Orsay, UMR 8182, Université Paris Sud, Université Paris-Saclay, 91405 Orsay Cedex, France
| | - Clémence Sicard
- Institut Lavoisier de Versailles, UVSQ, CNRS, Université Paris-Saclay, 45 Avenue des Etat-Unis, Versailles, France
| |
Collapse
|
20
|
Antimony-doped tin oxide nanoparticles as peroxidase mimics for paper-based colorimetric detection of glucose using smartphone read-out. Mikrochim Acta 2019; 186:403. [DOI: 10.1007/s00604-019-3506-6] [Citation(s) in RCA: 23] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/21/2019] [Accepted: 05/12/2019] [Indexed: 12/26/2022]
|
21
|
Zhao J, Peng Q, Wang Z, Xu W, Xiao H, Wu Q, Sun HL, Ma F, Zhao J, Sun CJ, Zhao J, Li J. Proton mediated spin state transition of cobalt heme analogs. Nat Commun 2019; 10:2303. [PMID: 31127106 PMCID: PMC6534676 DOI: 10.1038/s41467-019-10357-z] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/05/2018] [Accepted: 05/02/2019] [Indexed: 11/17/2022] Open
Abstract
The spin state transition from low spin to high spin upon substrate addition is one of the key steps in cytochrome P450 catalysis. External perturbations such as pH and hydrogen bonding can also trigger the spin state transition of hemes through deprotonated histidine (e.g. Cytochrome c). In this work, we report the isolated 2-methylimidazole Cobalt(II) [Co(TPP)(2-MeHIm)] and [Co(TTP)(2-MeHIm)], and the corresponding 2-methylimidazolate derivatives where the N−H proton of axial 2-MeHIm is removed. Interestingly, various spectroscopies including EPR and XAFS determine a high-spin state (S = 3/2) for the imidazolate derivatives, in contrast to the low-spin state (S = 1/2) of all known imidazole analogs. DFT assisted stereoelectronic investigations are applied to understand the metal-ligand interactions, which suggest that the dramatically displaced metal center allowing a promotion eg(dπ) → b1g(\documentclass[12pt]{minimal}
\usepackage{amsmath}
\usepackage{wasysym}
\usepackage{amsfonts}
\usepackage{amssymb}
\usepackage{amsbsy}
\usepackage{mathrsfs}
\usepackage{upgreek}
\setlength{\oddsidemargin}{-69pt}
\begin{document}$$d_{x^2 - y^2}$$\end{document}dx2-y2) is crucial for the occurrence of the spin state transition. Studying the electronic structures and spin transitions of synthetic heme analogs is crucial to advancing our understanding of heme enzyme mechanisms. Here the authors show that a Co(II) porphyrin complex undergoes an unexpected spin state transition upon deprotonation of its axial imidazole ligand.
Collapse
Affiliation(s)
- Jianping Zhao
- College of Materials Science and Opto-electronic Technology, CAS Center for Excellence in Topological Quantum Computation, & Center of Materials Science and Optoelectronics Engineering, University of Chinese Academy of Sciences, Yanqi Lake, Huairou District, 101408, Beijing, China
| | - Qian Peng
- State Key Laboratory and Institute of Elemento-Organic Chemistry, College of Chemistry, Nankai University, 300071, Tianjin, China
| | - Zijian Wang
- State Key Laboratory and Institute of Elemento-Organic Chemistry, College of Chemistry, Nankai University, 300071, Tianjin, China
| | - Wei Xu
- Institute of High Energy Physics & University of Chinese Academy of Sciences, Chinese Academy of Sciences, 100049, Beijing, China
| | - Hongyan Xiao
- Key Laboratory of Photochemical Conversion and Optoelectronic Materials, Technical Institute of Physics and Chemistry, Chinese Academy of Sciences, 100190, Beijing, China
| | - Qi Wu
- College of Materials Science and Opto-electronic Technology, CAS Center for Excellence in Topological Quantum Computation, & Center of Materials Science and Optoelectronics Engineering, University of Chinese Academy of Sciences, Yanqi Lake, Huairou District, 101408, Beijing, China
| | - Hao-Ling Sun
- Department of Chemistry and Beijing Key Laboratory of Energy Conversion and Storage Materials, Beijing Normal University, 100875, Beijing, China
| | - Fang Ma
- Department of Chemistry and Beijing Key Laboratory of Energy Conversion and Storage Materials, Beijing Normal University, 100875, Beijing, China
| | - Jiyong Zhao
- Advanced Photon Source, Argonne National Laboratory, Argonne, IL, 60439, USA
| | - Cheng-Jun Sun
- Advanced Photon Source, Argonne National Laboratory, Argonne, IL, 60439, USA
| | - Jianzhang Zhao
- State Key Laboratory of Fine Chemicals, School of Chemical Engineering, Dalian University of Technology, West Campus, 2 Ling-Gong Road, 116024, Dalian, China
| | - Jianfeng Li
- College of Materials Science and Opto-electronic Technology, CAS Center for Excellence in Topological Quantum Computation, & Center of Materials Science and Optoelectronics Engineering, University of Chinese Academy of Sciences, Yanqi Lake, Huairou District, 101408, Beijing, China.
| |
Collapse
|
22
|
Muginova SV, Vakhraneva ES, Myasnikova DA, Shekhovtsova TN. Fluorometric Determination of Artemisinin Using the Pyronin B–Microperoxidase-11 System. JOURNAL OF ANALYTICAL CHEMISTRY 2019. [DOI: 10.1134/s1061934818120079] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
|
23
|
Wang K, Su Y, Liang Y, Song Y, Wang L. Oral DhHP-6 for the Treatment of Type 2 Diabetes Mellitus. Int J Mol Sci 2019; 20:ijms20061517. [PMID: 30917579 PMCID: PMC6470840 DOI: 10.3390/ijms20061517] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/24/2019] [Revised: 03/15/2019] [Accepted: 03/22/2019] [Indexed: 12/16/2022] Open
Abstract
Type 2 diabetes mellitus (T2DM) is associated with pancreatic β-cell dysfunction which can be induced by oxidative stress. Deuterohemin-βAla-His-Thr-Val-Glu-Lys (DhHP-6) is a microperoxidase mimetic that can scavenge reactive oxygen species (ROS) in vivo. In our previous studies, we demonstrated an increased stability of linear peptides upon their covalent attachment to porphyrins. In this study, we assessed the utility of DhHP-6 as an oral anti-diabetic drug in vitro and in vivo. DhHP-6 showed high resistance to proteolytic degradation in vitro and in vivo. The degraded DhHP-6 product in gastrointestinal (GI) fluid retained the enzymatic activity of DhHP-6, but displayed a higher permeability coefficient. DhHP-6 protected against the cell damage induced by H2O2 and promoted insulin secretion in INS-1 cells. In the T2DM model, DhHP-6 reduced blood glucose levels and facilitated the recovery of blood lipid disorders. DhHP-6 also mitigated both insulin resistance and glucose tolerance. Most importantly, DhHP-6 promoted the recovery of damaged pancreas islets. These findings suggest that DhHP-6 in physiological environments has high stability against enzymatic degradation and maintains enzymatic activity. As DhHP-6 lowered the fasting blood glucose levels of T2DM mice, it thus represents a promising candidate for oral administration and clinical therapy.
Collapse
Affiliation(s)
- Kai Wang
- School of life Sciences, Jilin University, Changchun 130012, China.
| | - Yu Su
- School of life Sciences, Jilin University, Changchun 130012, China.
| | - Yuting Liang
- School of life Sciences, Jilin University, Changchun 130012, China.
| | - Yanhui Song
- School of life Sciences, Jilin University, Changchun 130012, China.
| | - Liping Wang
- School of life Sciences, Jilin University, Changchun 130012, China.
- Key Laboratory for Molecular Enzymology and Engineering, the Ministry of Education, Jilin University, Changchun 130012, China.
| |
Collapse
|
24
|
Reductive nitrosylation of ferric microperoxidase-11. J Biol Inorg Chem 2018; 24:21-29. [PMID: 30390140 DOI: 10.1007/s00775-018-1623-z] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/16/2018] [Accepted: 10/08/2018] [Indexed: 10/28/2022]
Abstract
Microperoxidase-11 (MP11) is an undecapeptide derived from horse heart cytochrome c, which is considered as a heme-protein model. Here, the reductive nitrosylation of ferric MP11 (MP11(III)) under anaerobic conditions has been investigated between pH 7.4 and 9.2, at T = 20.0 °C. At pH ≤ 7.7, NO binds reversibly to MP11(III) leading to the formation of the MP11(III)-NO complex. However, between pH 8.2 and 9.2, the addition of NO to MP11(III) leads to the formation of ferrous nitrosylated MP11(II) (MP11(II)-NO). In fact, the transient MP11{FeNO}6 species is converted to ferrous deoxygenated MP11 (MP11(II)) by OH-- and H2O-based catalysis, which represents the rate-limiting step of the whole reaction. Then, MP11(II) binds NO very rapidly leading to MP11(II)-NO formation. Over the whole pH range explored, the apparent values of kon, koff, and K (= koff/kon) for MP11(III)(-NO) (de)nitrosylation are essentially pH independent, ranging between 5.8 × 105 M-1 s-1 and 1.6 × 106 M-1 s-1, between 1.9 s-1 and 3.7 s-1, and between 1.4 × 10-6 M and 4.6 × 10-6 M, respectively. Values of the apparent pseudo-first-order rate constant for the MP11{FeNO}6 conversion to MP11(II) (i.e., h) increase linearly with pH; the apparent values [Formula: see text] and [Formula: see text] are 7.2 × 102 M-1 s-1 and 2.5 × 10-4 s-1, respectively. Present data confirm that MP11 is a useful molecular model to highlight the role of the protein matrix on the heme-based reactivity.
Collapse
|
25
|
Influence of heme c attachment on heme conformation and potential. J Biol Inorg Chem 2018; 23:1073-1083. [PMID: 30143872 DOI: 10.1007/s00775-018-1603-3] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/10/2018] [Accepted: 08/16/2018] [Indexed: 10/28/2022]
Abstract
Heme c is characterized by its covalent attachment to a polypeptide. The attachment is typically to a CXXCH motif in which the two Cys form thioether bonds with the heme, "X" can be any amino acid other than Cys, and the His serves as a heme axial ligand. Some cytochromes c, however, contain heme attachment motifs with three or four intervening residues in a CX3CH or CX4CH motif. Here, the impacts of these variations in the heme attachment motif on heme ruffling and electronic structure are investigated by spectroscopically characterizing CX3CH and CX4CH variants of Hydrogenobacter thermophilus cytochrome c552. In addition, a novel CXCH variant is studied. 1H and 13C NMR, EPR, and resonance Raman spectra of the protein variants are analyzed to deduce the extent of ruffling using previously reported relationships between these spectral data and heme ruffling. In addition, the reduction potentials of these protein variants are measured using protein film voltammetry. The CXCH and CX4CH variants are found to have enhanced heme ruffling and lower reduction potentials. Implications of these results for the use of these noncanonical motifs in nature, and for the engineering of novel heme peptide structures, are discussed.
Collapse
|
26
|
Boubeta FM, Bieza SA, Bringas M, Estrin DA, Boechi L, Bari SE. Mechanism of Sulfide Binding by Ferric Hemeproteins. Inorg Chem 2018; 57:7591-7600. [DOI: 10.1021/acs.inorgchem.8b00478] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Affiliation(s)
- Fernando M. Boubeta
- Instituto de Química Física de los Materiales, Medio Ambiente y Energía (INQUIMAE), CONICET and Universidad de Buenos Aires, Buenos Aires 1053, Argentina
| | - Silvina A. Bieza
- Instituto de Química Física de los Materiales, Medio Ambiente y Energía (INQUIMAE), CONICET and Universidad de Buenos Aires, Buenos Aires 1053, Argentina
| | - Mauro Bringas
- Instituto de Química Física de los Materiales, Medio Ambiente y Energía (INQUIMAE), CONICET and Universidad de Buenos Aires, Buenos Aires 1053, Argentina
| | - Darío A. Estrin
- Instituto de Química Física de los Materiales, Medio Ambiente y Energía (INQUIMAE), CONICET and Universidad de Buenos Aires, Buenos Aires 1053, Argentina
| | | | - Sara E. Bari
- Instituto de Química Física de los Materiales, Medio Ambiente y Energía (INQUIMAE), CONICET and Universidad de Buenos Aires, Buenos Aires 1053, Argentina
| |
Collapse
|
27
|
Abstract
Met80, one of the heme iron ligands in cytochrome c (cyt c), is readily oxidized to Met sulfoxide (Met-SO) by several biologically relevant oxidants. The modification has been suggested to affect both the electron-transfer (ET) and apoptotic functions of this metalloprotein. The coordination of the heme iron in Met-oxidized cyt c (Met-SO cyt c) is critical for both of these functions but has remained poorly defined. We present electronic absorption, NMR, and EPR spectroscopic investigations as well as kinetic studies and mutational analyses to identify the heme iron ligands in yeast iso-1 Met-SO cyt c. Similar to the alkaline form of native cyt c, Lys73 and Lys79 ligate to the ferric heme iron in the Met80-oxidized protein, but this coordination takes place at much lower pH. The ferrous heme iron is ligated by Met-SO, implying the redox-linked ligand switch in the modified protein. Binding studies with the model peptide microperoxidase-8 provide a rationale for alterations in ligation and for the role of the polypeptide packing in native and Met-SO cyt c. Imidazole binding experiments have revealed that Lys dissociation from the ferric heme in K73A/K79G/M80K (M80K#) and Met-SO is more than 3 orders of magnitude slower than the opening of the heme pocket that limits Met80 replacement in native cyt c. The Lys-to-Met-SO ligand substitution gates ET of ferric Met-SO cyt c with Co(terpy)22+. Owing to the slow Lys dissociation step, ET reaction is slow but possible, which is not the case for nonswitchable M80A and M80K#. Acidic conditions cause Lys replacement by a water ligand in Met-SO cyt c (p Ka = 6.3 ± 0.1), increasing the intrinsic peroxidase activity of the protein. This pH-driven ligand switch may be a mechanism to boost peroxidase function of cyt c specifically in apoptotic cells.
Collapse
Affiliation(s)
- Fangfang Zhong
- Department of Chemistry, Dartmouth College, Hanover, NH 03755
| | | |
Collapse
|
28
|
Ling P, Zhang Q, Cao T, Gao F. Versatile Three-Dimensional Porous Cu@Cu2
O Aerogel Networks as Electrocatalysts and Mimicking Peroxidases. Angew Chem Int Ed Engl 2018; 57:6819-6824. [DOI: 10.1002/anie.201801369] [Citation(s) in RCA: 119] [Impact Index Per Article: 19.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/01/2018] [Revised: 03/18/2018] [Indexed: 12/12/2022]
Affiliation(s)
- Pinghua Ling
- Laboratory of Functionalized Molecular Solids; Ministry of Education; Anhui Key Laboratory of Chemo/Biosensing; Laboratory of Optical Probes and Bioelectrocatalysis (LOPAB); College of Chemistry and Materials Science; Anhui Normal University; Wuhu 241002 P. R. China
| | - Qiang Zhang
- Laboratory of Functionalized Molecular Solids; Ministry of Education; Anhui Key Laboratory of Chemo/Biosensing; Laboratory of Optical Probes and Bioelectrocatalysis (LOPAB); College of Chemistry and Materials Science; Anhui Normal University; Wuhu 241002 P. R. China
| | - Tingting Cao
- Laboratory of Functionalized Molecular Solids; Ministry of Education; Anhui Key Laboratory of Chemo/Biosensing; Laboratory of Optical Probes and Bioelectrocatalysis (LOPAB); College of Chemistry and Materials Science; Anhui Normal University; Wuhu 241002 P. R. China
| | - Feng Gao
- Laboratory of Functionalized Molecular Solids; Ministry of Education; Anhui Key Laboratory of Chemo/Biosensing; Laboratory of Optical Probes and Bioelectrocatalysis (LOPAB); College of Chemistry and Materials Science; Anhui Normal University; Wuhu 241002 P. R. China
| |
Collapse
|
29
|
Ling P, Zhang Q, Cao T, Gao F. Versatile Three-Dimensional Porous Cu@Cu2
O Aerogel Networks as Electrocatalysts and Mimicking Peroxidases. Angew Chem Int Ed Engl 2018. [DOI: 10.1002/ange.201801369] [Citation(s) in RCA: 20] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Affiliation(s)
- Pinghua Ling
- Laboratory of Functionalized Molecular Solids; Ministry of Education; Anhui Key Laboratory of Chemo/Biosensing; Laboratory of Optical Probes and Bioelectrocatalysis (LOPAB); College of Chemistry and Materials Science; Anhui Normal University; Wuhu 241002 P. R. China
| | - Qiang Zhang
- Laboratory of Functionalized Molecular Solids; Ministry of Education; Anhui Key Laboratory of Chemo/Biosensing; Laboratory of Optical Probes and Bioelectrocatalysis (LOPAB); College of Chemistry and Materials Science; Anhui Normal University; Wuhu 241002 P. R. China
| | - Tingting Cao
- Laboratory of Functionalized Molecular Solids; Ministry of Education; Anhui Key Laboratory of Chemo/Biosensing; Laboratory of Optical Probes and Bioelectrocatalysis (LOPAB); College of Chemistry and Materials Science; Anhui Normal University; Wuhu 241002 P. R. China
| | - Feng Gao
- Laboratory of Functionalized Molecular Solids; Ministry of Education; Anhui Key Laboratory of Chemo/Biosensing; Laboratory of Optical Probes and Bioelectrocatalysis (LOPAB); College of Chemistry and Materials Science; Anhui Normal University; Wuhu 241002 P. R. China
| |
Collapse
|
30
|
Mantovani KM, Molgero Westrup KC, da Silva Junior RM, Jaerger S, Wypych F, Nakagaki S. Oxidation catalyst obtained by the immobilization of layered double hydroxide/Mn(iii) porphyrin on monodispersed silica spheres. Dalton Trans 2018; 47:3068-3073. [PMID: 29200223 DOI: 10.1039/c7dt03656f] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Several functional hybrid materials have been reported as immobilized porphyrin derivatives in various organic and inorganic host materials (polymers, mineral clays, silica, etc.), with potential applications in various fields, such as photochemistry, electrochemistry and heterogeneous catalysis. Layered double hydroxides (LDHs), commonly known as hydrotalcite-like materials, have also been analyzed for use as supports for metallocomplexes. Recently, nanocomposite materials with a core-shell structure produced by combining two kinds of nanometer-size materials have received considerable attention, since the use of these materials is a promising strategy to prevent the aggregation and self-oxidation of molecules, reducing the catalytic activity. In this study, monodispersed hierarchical layered double hydroxides on silica spheres (LDH@SiO2) with core-shell structures were developed for metalloporphyrin immobilization and the materials were used as the oxidant catalysts of different substrates.
Collapse
Affiliation(s)
- Karen Mary Mantovani
- Laboratório de Bioinorgânica e Catálise, Departamento de Química, Universidade Federal do Paraná, CP 19032, 81531-980, Curitiba, PR, Brazil.
| | | | | | | | | | | |
Collapse
|
31
|
Đurović M, Oszajca M, Stochel G, van Eldik R. The Influence of Redox‐Active Transition Metal Containing Micro‐ and Nanoparticles on the Properties of Representative Bioinorganic Reaction Systems. Eur J Inorg Chem 2018. [DOI: 10.1002/ejic.201701421] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
Affiliation(s)
- Mirjana Đurović
- Faculty of Chemistry Jagiellonian University Gronostajowa 2 30‐387 Kraków Poland
| | - Maria Oszajca
- Faculty of Chemistry Jagiellonian University Gronostajowa 2 30‐387 Kraków Poland
| | - Grażyna Stochel
- Faculty of Chemistry Jagiellonian University Gronostajowa 2 30‐387 Kraków Poland
| | - Rudi van Eldik
- Faculty of Chemistry Jagiellonian University Gronostajowa 2 30‐387 Kraków Poland
- Department of Chemistry and Pharmacy University of Erlangen‐Nuremberg Egerlandstr. 1 91058 Erlangen Germany
| |
Collapse
|
32
|
Chino M, Leone L, Zambrano G, Pirro F, D'Alonzo D, Firpo V, Aref D, Lista L, Maglio O, Nastri F, Lombardi A. Oxidation catalysis by iron and manganese porphyrins within enzyme-like cages. Biopolymers 2018; 109:e23107. [DOI: 10.1002/bip.23107] [Citation(s) in RCA: 27] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/05/2017] [Revised: 01/31/2018] [Accepted: 02/05/2018] [Indexed: 01/03/2023]
Affiliation(s)
- Marco Chino
- Department of Chemical Sciences; University of Napoli “Federico II,” Via Cintia; Napoli 80126 Italy
| | - Linda Leone
- Department of Chemical Sciences; University of Napoli “Federico II,” Via Cintia; Napoli 80126 Italy
| | - Gerardo Zambrano
- Department of Chemical Sciences; University of Napoli “Federico II,” Via Cintia; Napoli 80126 Italy
| | - Fabio Pirro
- Department of Chemical Sciences; University of Napoli “Federico II,” Via Cintia; Napoli 80126 Italy
| | - Daniele D'Alonzo
- Department of Chemical Sciences; University of Napoli “Federico II,” Via Cintia; Napoli 80126 Italy
| | - Vincenzo Firpo
- Department of Chemical Sciences; University of Napoli “Federico II,” Via Cintia; Napoli 80126 Italy
| | - Diaa Aref
- Department of Chemical Sciences; University of Napoli “Federico II,” Via Cintia; Napoli 80126 Italy
| | - Liliana Lista
- Department of Chemical Sciences; University of Napoli “Federico II,” Via Cintia; Napoli 80126 Italy
| | - Ornella Maglio
- Department of Chemical Sciences; University of Napoli “Federico II,” Via Cintia; Napoli 80126 Italy
- Institute of Biostructures and Bioimages-National Research Council, Via Mezzocannone 16; Napoli 80134 Italy
| | - Flavia Nastri
- Department of Chemical Sciences; University of Napoli “Federico II,” Via Cintia; Napoli 80126 Italy
| | - Angela Lombardi
- Department of Chemical Sciences; University of Napoli “Federico II,” Via Cintia; Napoli 80126 Italy
| |
Collapse
|
33
|
Silveira CM, Castro MA, Dantas JM, Salgueiro C, Murgida DH, Todorovic S. Structure, electrocatalysis and dynamics of immobilized cytochrome PccH and its microperoxidase. Phys Chem Chem Phys 2018; 19:8908-8918. [PMID: 28295106 DOI: 10.1039/c6cp08361g] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Geobacter sulfurreducens cells have the ability to exchange electrons with conductive materials, and the periplasmic cytochrome PccH plays an essential role in the direct electrode-to-cell electron transfer in this bacterium. It has atypically low redox potential and unique structural features that differ from those observed in other c-type cytochromes. We report surface enhanced resonance Raman spectroscopic and electrochemical characterization of the immobilized PccH, together with molecular dynamics simulations that allow for the rationalization of experimental observations. Upon attachment to electrodes functionalized with partially or fully hydrophobic self-assembled monolayers, PccH displays a distribution of native and non-native heme spin configurations, similar to those observed in horse heart cytochrome c. The native structural and thermodynamic features of PccH are preserved upon attachment mixed hydrophobic (-CH3/-NH2) surfaces, while pure -OH, -NH2 and -COOH surfaces do not provide suitable platforms for its adsorption, indicating that its still unknown physiological redox partner might be membrane integrated. Neither of the employed immobilization strategies results in electrocatalytically active PccH capable of the reduction of hydrogen peroxide. Pseudoperoxidase activity is observed in immobilized microperoxidase, which is enzymatically produced from PccH and spectroscopically characterized. Further improvement of PccH microperoxidase stability is required for its application in electrochemical biosensing of hydrogen peroxide.
Collapse
Affiliation(s)
- Célia M Silveira
- Instituto de Tecnologia Química e Biológica António Xavier, Universidade NOVA de Lisboa, Av. da República, 2780-157 Oeiras, Portugal. and UCIBIO, REQUIMTE, Faculdade de Ciências e Tecnologia, Universidade NOVA de Lisboa, 2829-516 Monte de Caparica, Portugal
| | - María A Castro
- Departamento de Química Inorgánica, Analítica y Química Física and INQUIMAE (CONICET-UBA), Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, Argentina
| | - Joana M Dantas
- UCIBIO, REQUIMTE, Faculdade de Ciências e Tecnologia, Universidade NOVA de Lisboa, 2829-516 Monte de Caparica, Portugal
| | - Carlos Salgueiro
- UCIBIO, REQUIMTE, Faculdade de Ciências e Tecnologia, Universidade NOVA de Lisboa, 2829-516 Monte de Caparica, Portugal
| | - Daniel H Murgida
- Departamento de Química Inorgánica, Analítica y Química Física and INQUIMAE (CONICET-UBA), Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, Argentina
| | - Smilja Todorovic
- Instituto de Tecnologia Química e Biológica António Xavier, Universidade NOVA de Lisboa, Av. da República, 2780-157 Oeiras, Portugal.
| |
Collapse
|
34
|
Nye DB, Preimesberger MR, Majumdar A, Lecomte JTJ. Histidine-Lysine Axial Ligand Switching in a Hemoglobin: A Role for Heme Propionates. Biochemistry 2018; 57:631-644. [PMID: 29271191 DOI: 10.1021/acs.biochem.7b01155] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Abstract
The hemoglobin of Synechococcus sp. PCC 7002, GlbN, is a monomeric group I truncated protein (TrHb1) that coordinates the heme iron with two histidine ligands at neutral pH. One of these is the distal histidine (His46), a residue that can be displaced by dioxygen and other small molecules. Here, we show with mutagenesis, electronic absorption spectroscopy, and nuclear magnetic resonance (NMR) spectroscopy that at high pH and exclusively in the ferrous state, Lys42 competes with His46 for the iron coordination site. When b heme is originally present, the population of the lysine-bound species remains too small for detailed characterization; however, the population can be increased significantly by using dimethyl-esterified heme. Electronic absorption and NMR spectroscopies showed that the reversible ligand switching process occurs with an apparent pKa of 9.3 and a Lys-ligated population of ∼60% at the basic pH limit in the modified holoprotein. The switching rate, which is slow on the chemical shift time scale, was estimated to be 20-30 s-1 by NMR exchange spectroscopy. Lys42-His46 competition and attendant conformational rearrangement appeared to be related to weakened bis-histidine ligation and enhanced backbone dynamics in the ferrous protein. The pH- and redox-dependent ligand exchange process observed in GlbN illustrates the structural plasticity allowed by the TrHb1 fold and demonstrates the importance of electrostatic interactions at the heme periphery for achieving axial ligand selection. An analogy is drawn to the alkaline transition of cytochrome c, in which Lys-Met competition is detected at alkaline pH, but, in contrast to GlbN, in the ferric state only.
Collapse
Affiliation(s)
- Dillon B Nye
- T. C. Jenkins Department of Biophysics, Johns Hopkins University , Baltimore, Maryland 21218, United States
| | - Matthew R Preimesberger
- T. C. Jenkins Department of Biophysics, Johns Hopkins University , Baltimore, Maryland 21218, United States
| | - Ananya Majumdar
- Biomolecular NMR Center, Johns Hopkins University , Baltimore, Maryland 21218, United States
| | - Juliette T J Lecomte
- T. C. Jenkins Department of Biophysics, Johns Hopkins University , Baltimore, Maryland 21218, United States
| |
Collapse
|
35
|
Prieto T, Santana V, Britto AMM, Araujo-Chaves JC, R Nascimento O, L Nantes-Cardoso I. Structure and Catalysis of Fe(III) and Cu(II) Microperoxidase-11 Interacting with the Positively Charged Interfaces of Lipids. Molecules 2017; 22:molecules22081212. [PMID: 28933729 PMCID: PMC6151982 DOI: 10.3390/molecules22081212] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/06/2017] [Revised: 06/20/2017] [Accepted: 07/14/2017] [Indexed: 11/24/2022] Open
Abstract
Numerous applications have been described for microperoxidases (MPs) such as in photoreceptors, sensing, drugs, and hydrogen evolution. The last application was obtained by replacing Fe(III), the native central metal, by cobalt ion and inspired part of the present study. Here, the Fe(III) of MP-11 was replaced by Cu(II) that is also a stable redox state in aerated medium, and the structure and activity of both MPs were modulated by the interaction with the positively charged interfaces of lipids. Comparative spectroscopic characterization of Fe(III) and Cu(II)MP-11 in the studied media demonstrated the presence of high and low spin species with axial distortion. The association of the Fe(III)MP-11 with CTAB and Cu(II)MP-11 with DODAB affected the colloidal stability of the surfactants that was recovered by heating. This result is consistent with hydrophobic interactions of MPs with DODAB vesicles and CTAB micelles. The hydrophobic interactions decreased the heme accessibility to substrates and the Fe(III) MP-11catalytic efficiency. Cu(II)MP-11 challenged by peroxides exhibited a cyclic Cu(II)/Cu(I) interconversion mechanism that is suggestive of a mimetic Cu/ZnSOD (superoxide dismutase) activity against peroxides. Hydrogen peroxide-activated Cu(II)MP-11 converted Amplex Red® to dihydroresofurin. This study opens more possibilities for technological applications of MPs.
Collapse
Affiliation(s)
- Tatiana Prieto
- Universidade Federal do ABC, Santo André 09210-170, SP, Brazil.
| | - Vinicius Santana
- Universidade de São Paulo, Instituto de Física de São Carlos, São Carlos 13400-970, SP, Brazil.
| | | | | | - Otaciro R Nascimento
- Universidade de São Paulo, Instituto de Física de São Carlos, São Carlos 13400-970, SP, Brazil.
| | | |
Collapse
|
36
|
Solomon LA, Kronenberg JB, Fry HC. Control of Heme Coordination and Catalytic Activity by Conformational Changes in Peptide-Amphiphile Assemblies. J Am Chem Soc 2017; 139:8497-8507. [PMID: 28505436 DOI: 10.1021/jacs.7b01588] [Citation(s) in RCA: 50] [Impact Index Per Article: 7.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Abstract
Self-assembling peptide materials have gained significant attention, due to well-demonstrated applications, but they are functionally underutilized. To advance their utility, we use noncovalent interactions to incorporate the biological cofactor heme-B for catalysis. Heme-proteins achieve differing functions through structural and coordinative variations. Here, we replicate this phenomenon by highlighting changes in heme reactivity as a function of coordination, sequence, and morphology (micelles versus fibers) in a series of simple peptide amphiphiles with the sequence c16-xyL3K3-CO2H where c16 is a palmitoyl moiety and xy represents the heme binding region: AA, AH, HH, and MH. The morphology of this peptide series is characterized using transmission electron and atomic force microscopies as well as dynamic light scattering. Within this small library of peptide constructs, we show that three spectroscopically (UV/visible and electron paramagnetic resonance) distinct heme environments were generated: noncoordinated/embedded high-spin, five-coordinate high-spin, and six-coordinate low-spin. The resulting material's functional dependence on sequence and supramolecular morphology is highlighted 2-fold. First, the heme active site binds carbon monoxide in both micelles and fibers, demonstrating that the heme active site in both morphologies is accessible to small molecules for catalysis. Second, peroxidase activity was observed in heme-containing micelles yet was significantly reduced in heme-containing fibers. We briefly discuss the implications these findings have in the production of functional, self-assembling peptide materials.
Collapse
Affiliation(s)
- Lee A Solomon
- Argonne National Laboratory , 9700 South Cass Avenue, Argonne, Illinois 60439, United States
| | - Jacob B Kronenberg
- Illinois Math and Science Academy , 1500 West Sullivan Road, Aurora, Illinois 60506, United States
| | - H Christopher Fry
- Argonne National Laboratory , 9700 South Cass Avenue, Argonne, Illinois 60439, United States
| |
Collapse
|
37
|
Moosavi-Movahedi Z, Kalejahi ES, Nourisefat M, Maghami P, Poursasan N, Moosavi-Movahedi AA. Mixed SDS-Hemin-Imidazole at low ionic strength being efficient peroxidase-like as a nanozyme. Colloids Surf A Physicochem Eng Asp 2017. [DOI: 10.1016/j.colsurfa.2017.02.086] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
|
38
|
Gu J, Shin DW, Pletneva EV. Remote Perturbations in Tertiary Contacts Trigger Ligation of Lysine to the Heme Iron in Cytochrome c. Biochemistry 2017; 56:2950-2966. [PMID: 28474881 DOI: 10.1021/acs.biochem.6b01187] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Perturbations in protein structure define the mechanism of allosteric regulation and biological information transfer. In cytochrome c (cyt c), ligation of Met80 to the heme iron is critical for the protein's electron-transfer (ET) function in oxidative phosphorylation and for suppressing its peroxidase activity in apoptosis. The hard base Lys is a better match for the hard ferric iron than the soft base Met is, suggesting the key role of the protein scaffold in favoring Met ligation. To probe the role of the protein structure in the maintenance of Met ligation, mutations T49V and Y67R/M80A were designed to disrupt hydrogen bonding and packing of the heme coordination loop, respectively. Electronic absorption, nuclear magnetic resonance, and electron paramagnetic resonance spectra reveal that ferric forms of both variants are Lys-ligated at neutral pH. A minor change in the tertiary contacts in T49V, away from the heme coordination loop, appears to be sufficient to execute a change in ligation, suggesting a cross-talk between the different regions of the protein structure and a possibility of built-in conformational switches in cyt c. Analyses of thermodynamic stability, kinetics of Lys binding and dissociation, and the pH-dependent changes in ligation provide a detailed characterization of the Lys coordination in these variants and relate these properties to the extent of structural perturbations. The findings emphasize the importance of the hydrogen-bonding network in controlling ligation of the native Met80 to the heme iron.
Collapse
Affiliation(s)
- Jie Gu
- Department of Chemistry, Dartmouth College , Hanover, New Hampshire 03755, United States
| | - Dong-Woo Shin
- Department of Chemistry, Dartmouth College , Hanover, New Hampshire 03755, United States
| | - Ekaterina V Pletneva
- Department of Chemistry, Dartmouth College , Hanover, New Hampshire 03755, United States
| |
Collapse
|
39
|
Vázquez-González M, Liao WC, Cazelles R, Wang S, Yu X, Gutkin V, Willner I. Mimicking Horseradish Peroxidase Functions Using Cu 2+-Modified Carbon Nitride Nanoparticles or Cu 2+-Modified Carbon Dots as Heterogeneous Catalysts. ACS NANO 2017; 11:3247-3253. [PMID: 28234445 DOI: 10.1021/acsnano.7b00352] [Citation(s) in RCA: 185] [Impact Index Per Article: 26.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/21/2023]
Abstract
Cu2+-functionalized carbon nitride nanoparticles (Cu2+-g-C3N4 NPs), ∼200 nm, and Cu2+-carbon dots (Cu2+-C-dots), ∼8 nm, act as horseradish peroxidase-mimicking catalysts. The nanoparticles catalyze the generation of chemiluminescence in the presence of luminol/H2O2 and catalyze the oxidation of dopamine by H2O2 to form aminochrome. The Cu2+-g-C3N4-driven generation of chemiluminescence is used to develop a H2O2 sensor and is implemented to develop a glucose detection platform and a sensor for probing glucose oxidase. Also, the Cu2+-C-dots are functionalized with the β-cyclodextrin (β-CD) receptor units. The concentration of dopamine, at the Cu2+-C-dots' surface, by means of the β-CD receptor sites, leads to a 4-fold enhancement in the oxidation of dopamine by H2O2 to yield aminochrome compared to that of the unmodified C-dots.
Collapse
Affiliation(s)
- Margarita Vázquez-González
- Institute of Chemistry, Center for Nanoscience and Nanotechnology, The Hebrew University of Jerusalem , Jerusalem 91904, Israel
| | - Wei-Ching Liao
- Institute of Chemistry, Center for Nanoscience and Nanotechnology, The Hebrew University of Jerusalem , Jerusalem 91904, Israel
| | - Rémi Cazelles
- Institute of Chemistry, Center for Nanoscience and Nanotechnology, The Hebrew University of Jerusalem , Jerusalem 91904, Israel
| | - Shan Wang
- Institute of Chemistry, Center for Nanoscience and Nanotechnology, The Hebrew University of Jerusalem , Jerusalem 91904, Israel
| | - Xu Yu
- Institute of Chemistry, Center for Nanoscience and Nanotechnology, The Hebrew University of Jerusalem , Jerusalem 91904, Israel
| | - Vitaly Gutkin
- Institute of Chemistry, Center for Nanoscience and Nanotechnology, The Hebrew University of Jerusalem , Jerusalem 91904, Israel
| | - Itamar Willner
- Institute of Chemistry, Center for Nanoscience and Nanotechnology, The Hebrew University of Jerusalem , Jerusalem 91904, Israel
| |
Collapse
|
40
|
Wang S, Cazelles R, Liao WC, Vázquez-González M, Zoabi A, Abu-Reziq R, Willner I. Mimicking Horseradish Peroxidase and NADH Peroxidase by Heterogeneous Cu 2+-Modified Graphene Oxide Nanoparticles. NANO LETTERS 2017; 17:2043-2048. [PMID: 28183178 DOI: 10.1021/acs.nanolett.7b00093] [Citation(s) in RCA: 143] [Impact Index Per Article: 20.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/26/2023]
Abstract
Cu2+-ion-modified graphene oxide nanoparticles, Cu2+-GO NPs, act as a heterogeneous catalyst mimicking functions of horseradish peroxidase, HRP, and of NADH peroxidase. The Cu2+-GO NPs catalyze the oxidation of dopamine to aminochrome by H2O2 and catalyze the generation of chemiluminescence in the presence of luminol and H2O2. The Cu2+-GO NPs provide an active material for the chemiluminescence detection of H2O2 and allow the probing of the activity of H2O2-generating oxidases and the detection of their substrates. This is exemplified with detecting glucose by the aerobic oxidation of glucose by glucose oxidase and the Cu2+-GO NP-stimulated chemiluminescence intensity generated by the H2O2 product. Similarly, the Cu2+-GO NPs catalyze the H2O2 oxidation of NADH to the biologically active NAD+ cofactor. This catalytic system allows its conjugation to biocatalytic transformations involving NAD+-dependent enzyme, as exemplified for the alcohol dehydrogenase-catalyzed oxidation of benzyl alcohol to benzoic acid through the Cu2+-GO NPs-catalyzed regeneration of NAD+.
Collapse
Affiliation(s)
- Shan Wang
- Institute of Chemistry, The Center for Nanoscience and Nanotechnology, The Hebrew University of Jerusalem , Jerusalem 91904, Israel
| | - Rémi Cazelles
- Institute of Chemistry, The Center for Nanoscience and Nanotechnology, The Hebrew University of Jerusalem , Jerusalem 91904, Israel
| | - Wei-Ching Liao
- Institute of Chemistry, The Center for Nanoscience and Nanotechnology, The Hebrew University of Jerusalem , Jerusalem 91904, Israel
| | - Margarita Vázquez-González
- Institute of Chemistry, The Center for Nanoscience and Nanotechnology, The Hebrew University of Jerusalem , Jerusalem 91904, Israel
| | - Amani Zoabi
- Institute of Chemistry, The Center for Nanoscience and Nanotechnology, The Hebrew University of Jerusalem , Jerusalem 91904, Israel
| | - Raed Abu-Reziq
- Institute of Chemistry, The Center for Nanoscience and Nanotechnology, The Hebrew University of Jerusalem , Jerusalem 91904, Israel
| | - Itamar Willner
- Institute of Chemistry, The Center for Nanoscience and Nanotechnology, The Hebrew University of Jerusalem , Jerusalem 91904, Israel
| |
Collapse
|
41
|
Bioelectrocatalytic Reduction of Hydrogen Peroxide by Microperoxidase-11 Immobilized on Mesoporous Antimony-Doped Tin Oxide. ChemElectroChem 2017. [DOI: 10.1002/celc.201600776] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
|
42
|
Chakraborty J, Nath I, Verpoort F. Snapshots of encapsulated porphyrins and heme enzymes in metal-organic materials: A prevailing paradigm of heme mimicry. Coord Chem Rev 2016. [DOI: 10.1016/j.ccr.2016.08.006] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023]
|
43
|
Kalaivani G, Sivanesan A, Kannan A, Sevvel R. Generating monomeric 5-coordinated microperoxidase-11 using carboxylic acid functionalized silver nanoparticles: A surface-enhanced resonance Raman scattering analysis. Colloids Surf B Biointerfaces 2016; 146:722-30. [DOI: 10.1016/j.colsurfb.2016.07.017] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/28/2016] [Revised: 07/03/2016] [Accepted: 07/06/2016] [Indexed: 12/14/2022]
|
44
|
Nastri F, Chino M, Maglio O, Bhagi-Damodaran A, Lu Y, Lombardi A. Design and engineering of artificial oxygen-activating metalloenzymes. Chem Soc Rev 2016; 45:5020-54. [PMID: 27341693 PMCID: PMC5021598 DOI: 10.1039/c5cs00923e] [Citation(s) in RCA: 133] [Impact Index Per Article: 16.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Abstract
Many efforts are being made in the design and engineering of metalloenzymes with catalytic properties fulfilling the needs of practical applications. Progress in this field has recently been accelerated by advances in computational, molecular and structural biology. This review article focuses on the recent examples of oxygen-activating metalloenzymes, developed through the strategies of de novo design, miniaturization processes and protein redesign. Considerable progress in these diverse design approaches has produced many metal-containing biocatalysts able to adopt the functions of native enzymes or even novel functions beyond those found in Nature.
Collapse
Affiliation(s)
- Flavia Nastri
- Department of Chemical Sciences, University of Naples “Federico II”, Via Cintia, 80126 Naples, Italy
| | - Marco Chino
- Department of Chemical Sciences, University of Naples “Federico II”, Via Cintia, 80126 Naples, Italy
| | - Ornella Maglio
- Department of Chemical Sciences, University of Naples “Federico II”, Via Cintia, 80126 Naples, Italy
- IBB, CNR, Via Mezzocannone 16, 80134 Naples, Italy
| | - Ambika Bhagi-Damodaran
- Department of Chemistry, University of Illinois at Urbana-Champaign, A322 CLSL, 600 South Mathews Avenue, Urbana, IL 61801
| | - Yi Lu
- Department of Chemistry, University of Illinois at Urbana-Champaign, A322 CLSL, 600 South Mathews Avenue, Urbana, IL 61801
| | - Angela Lombardi
- Department of Chemical Sciences, University of Naples “Federico II”, Via Cintia, 80126 Naples, Italy
| |
Collapse
|
45
|
Ascenzi P, Sbardella D, Santucci R, Coletta M. Cyanide binding to ferrous and ferric microperoxidase-11. J Biol Inorg Chem 2016; 21:511-22. [DOI: 10.1007/s00775-016-1361-z] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/04/2016] [Accepted: 05/09/2016] [Indexed: 10/21/2022]
|
46
|
Kogikoski S, Sousa CP, Liberato MS, Andrade-Filho T, Prieto T, Ferreira FF, Rocha AR, Guha S, Alves WA. Multifunctional biosensors based on peptide–polyelectrolyte conjugates. Phys Chem Chem Phys 2016; 18:3223-33. [DOI: 10.1039/c5cp07165h] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]
Abstract
The crystal structure of self-assembled peptide nanostructures dictates the conductivity. We show that the orthorhombic phase can be doped with PAH, improving hole and electron injection, opening opportunities for self-assembled peptide composites.
Collapse
Affiliation(s)
- S. Kogikoski
- Centro de Ciências Naturais e Humanas
- Universidade Federal do ABC
- Santo André
- Brazil
| | - C. P. Sousa
- Centro de Ciências Naturais e Humanas
- Universidade Federal do ABC
- Santo André
- Brazil
| | - M. S. Liberato
- Centro de Ciências Naturais e Humanas
- Universidade Federal do ABC
- Santo André
- Brazil
| | - T. Andrade-Filho
- Instituto de Ciências Exatas
- Faculdade de Física
- Universidade Federal do Sul e Sudeste do Pará
- Marabá
- Brazil
| | - T. Prieto
- Centro de Ciências Naturais e Humanas
- Universidade Federal do ABC
- Santo André
- Brazil
| | - F. F. Ferreira
- Centro de Ciências Naturais e Humanas
- Universidade Federal do ABC
- Santo André
- Brazil
| | - A. R. Rocha
- Instituto de Física Teórica
- Universidade Estadual Paulista – UNESP
- São Paulo
- Brazil
| | - S. Guha
- Department of Physics of Astronomy
- University of Missouri
- Columbia
- USA
| | - W. A. Alves
- Centro de Ciências Naturais e Humanas
- Universidade Federal do ABC
- Santo André
- Brazil
| |
Collapse
|
47
|
Zhao Z, Zhang J, Wang M, Wang Z, Wang L, Ma L, Huang X, Li Z. Structure advantage and peroxidase activity enhancement of deuterohemin-peptide–inorganic hybrid flowers. RSC Adv 2016. [DOI: 10.1039/c6ra24192a] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
Hybridizing deuterohemin-peptide (DhHP-6) with copper phosphate to form hybrid flowers was prepared for preventing DhHP-6 aggregation.
Collapse
Affiliation(s)
- Zijian Zhao
- Institute of Theoretical Chemistry
- Jilin University
- Changchun 130023
- PR China
- Key Laboratory for Molecular Enzymology
| | - Ji Zhang
- Key Laboratory for Molecular Enzymology
- Engineering of Ministry of Education
- College of Life Science
- Jilin University
- Changchun 130012
| | - Mingyang Wang
- National Engineering Laboratory for AIDS Vaccine
- College of Life Science
- Jilin University
- Changchun 130012
- PR China
| | - Zhi Wang
- Key Laboratory for Molecular Enzymology
- Engineering of Ministry of Education
- College of Life Science
- Jilin University
- Changchun 130012
| | - Liping Wang
- National Engineering Laboratory for AIDS Vaccine
- College of Life Science
- Jilin University
- Changchun 130012
- PR China
| | - Li Ma
- Key Laboratory for Molecular Enzymology
- Engineering of Ministry of Education
- College of Life Science
- Jilin University
- Changchun 130012
| | - Xuri Huang
- Institute of Theoretical Chemistry
- Jilin University
- Changchun 130023
- PR China
| | - Zhengqiang Li
- Key Laboratory for Molecular Enzymology
- Engineering of Ministry of Education
- College of Life Science
- Jilin University
- Changchun 130012
| |
Collapse
|
48
|
Ascenzi P, Sbardella D, Fiocchetti M, Santucci R, Coletta M. NO2−-mediated nitrosylation of ferrous microperoxidase-11. J Inorg Biochem 2015; 153:121-127. [DOI: 10.1016/j.jinorgbio.2015.06.022] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/25/2015] [Revised: 06/03/2015] [Accepted: 06/30/2015] [Indexed: 11/29/2022]
|
49
|
Carmona-Ribeiro AM, Prieto T, Nantes IL. Nanostructures for peroxidases. Front Mol Biosci 2015; 2:50. [PMID: 26389124 PMCID: PMC4558528 DOI: 10.3389/fmolb.2015.00050] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/19/2014] [Accepted: 08/19/2015] [Indexed: 11/13/2022] Open
Abstract
Peroxidases are enzymes catalyzing redox reactions that cleave peroxides. Their active redox centers have heme, cysteine thiols, selenium, manganese, and other chemical moieties. Peroxidases and their mimetic systems have several technological and biomedical applications such as environment protection, energy production, bioremediation, sensors and immunoassays design, and drug delivery devices. The combination of peroxidases or systems with peroxidase-like activity with nanostructures such as nanoparticles, nanotubes, thin films, liposomes, micelles, nanoflowers, nanorods and others is often an efficient strategy to improve catalytic activity, targeting, and reusability.
Collapse
Affiliation(s)
- Ana M Carmona-Ribeiro
- Biocolloids Laboratory, Departamento de Bioquímica, Instituto de Química, Universidade de São Paulo São Paulo, Brazil
| | - Tatiana Prieto
- NanoBioMav, Centro de Ciências Naturais e Humanas, Universidade Federal do ABC Santo André, Brazil
| | - Iseli L Nantes
- NanoBioMav, Centro de Ciências Naturais e Humanas, Universidade Federal do ABC Santo André, Brazil
| |
Collapse
|
50
|
|