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Number Cited by Other Article(s)
1
Centeno SP, Nothdurft K, Klymchenko AS, Pich A, Richtering W, Wöll D. FLIM nanoscopy resolves the structure and preferential adsorption in the co-nonsolvency of PNIPAM microgels in methanol-water. J Colloid Interface Sci 2025;678:210-220. [PMID: 39243721 DOI: 10.1016/j.jcis.2024.08.235] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/08/2024] [Revised: 08/27/2024] [Accepted: 08/28/2024] [Indexed: 09/09/2024]
2
Mathur D, Díaz SA, Hildebrandt N, Pensack RD, Yurke B, Biaggne A, Li L, Melinger JS, Ancona MG, Knowlton WB, Medintz IL. Pursuing excitonic energy transfer with programmable DNA-based optical breadboards. Chem Soc Rev 2023;52:7848-7948. [PMID: 37872857 PMCID: PMC10642627 DOI: 10.1039/d0cs00936a] [Citation(s) in RCA: 15] [Impact Index Per Article: 15.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/15/2023] [Indexed: 10/25/2023]
3
Simeth NA, de Mendoza P, Dubach VRA, Stuart MCA, Smith JW, Kudernac T, Browne WR, Feringa BL. Photoswitchable architecture transformation of a DNA-hybrid assembly at the microscopic and macroscopic scale. Chem Sci 2022;13:3263-3272. [PMID: 35414864 PMCID: PMC8926171 DOI: 10.1039/d1sc06490h] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/21/2021] [Accepted: 02/16/2022] [Indexed: 01/01/2023]  Open
4
Kashida H, Asanuma H. Pseudo Base Pairs that Exhibit High Duplex Stability and Orthogonality through Covalent and Non-covalent Interactions. J SYN ORG CHEM JPN 2021. [DOI: 10.5059/yukigoseikyokaishi.79.1013] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
5
Madhu M, Ramakrishnan R, Vijay V, Hariharan M. Free Charge Carriers in Homo-Sorted π-Stacks of Donor-Acceptor Conjugates. Chem Rev 2021;121:8234-8284. [PMID: 34133137 DOI: 10.1021/acs.chemrev.1c00078] [Citation(s) in RCA: 39] [Impact Index Per Article: 13.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
6
Hanser F, Marsol C, Valencia C, Villa P, Klymchenko AS, Bonnet D, Karpenko J. Nile Red-Based GPCR Ligands as Ultrasensitive Probes of the Local Lipid Microenvironment of the Receptor. ACS Chem Biol 2021;16:651-660. [PMID: 33733725 DOI: 10.1021/acschembio.0c00897] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023]
7
Mass OA, Wilson CK, Roy SK, Barclay MS, Patten LK, Terpetschnig EA, Lee J, Pensack RD, Yurke B, Knowlton WB. Exciton Delocalization in Indolenine Squaraine Aggregates Templated by DNA Holliday Junction Scaffolds. J Phys Chem B 2020;124:9636-9647. [PMID: 33052691 DOI: 10.1021/acs.jpcb.0c06480] [Citation(s) in RCA: 37] [Impact Index Per Article: 9.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/21/2023]
8
Kashida H, Azuma H, Maruyama R, Araki Y, Wada T, Asanuma H. Efficient Light‐Harvesting Antennae Resulting from the Dense Organization of Dyes into DNA Junctions through d ‐Threoninol. Angew Chem Int Ed Engl 2020;59:11360-11363. [DOI: 10.1002/anie.202004221] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/23/2020] [Indexed: 01/07/2023]
9
Kashida H, Azuma H, Maruyama R, Araki Y, Wada T, Asanuma H. Efficient Light‐Harvesting Antennae Resulting from the Dense Organization of Dyes into DNA Junctions through d ‐Threoninol. Angew Chem Int Ed Engl 2020. [DOI: 10.1002/ange.202004221] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
10
Karmakar S, Horrocks T, Gibbons BC, Guenther DC, Emehiser R, Hrdlicka PJ. Synthesis and biophysical characterization of oligonucleotides modified with O2'-alkylated RNA monomers featuring substituted pyrene moieties. Org Biomol Chem 2019;17:609-621. [PMID: 30575837 DOI: 10.1039/c8ob02764a] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
11
Kashida H, Kawai H, Maruyama R, Kokubo Y, Araki Y, Wada T, Asanuma H. Quantitative evaluation of energy migration between identical chromophores enabled by breaking symmetry. Commun Chem 2018. [DOI: 10.1038/s42004-018-0093-0] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]  Open
12
Cannon BL, Patten LK, Kellis DL, Davis PH, Lee J, Graugnard E, Yurke B, Knowlton WB. Large Davydov Splitting and Strong Fluorescence Suppression: An Investigation of Exciton Delocalization in DNA-Templated Holliday Junction Dye Aggregates. J Phys Chem A 2018;122:2086-2095. [PMID: 29420037 DOI: 10.1021/acs.jpca.7b12668] [Citation(s) in RCA: 45] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
13
Hrdlicka PJ, Karmakar S. 25 years and still going strong: 2'-O-(pyren-1-yl)methylribonucleotides - versatile building blocks for applications in molecular biology, diagnostics and materials science. Org Biomol Chem 2017;15:9760-9774. [PMID: 29135014 PMCID: PMC5711458 DOI: 10.1039/c7ob02152f] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
14
Karmakar S, Guenther DC, Gibbons BC, Hrdlicka PJ. Recognition of mixed-sequence DNA using double-stranded probes with interstrand zipper arrangements of O2'-triphenylene- and coronene-functionalized RNA monomers. Org Biomol Chem 2017;15:9362-9371. [PMID: 29090304 PMCID: PMC5700769 DOI: 10.1039/c7ob01920c] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
15
Cannon BL, Kellis DL, Patten LK, Davis PH, Lee J, Graugnard E, Yurke B, Knowlton WB. Coherent Exciton Delocalization in a Two-State DNA-Templated Dye Aggregate System. J Phys Chem A 2017;121:6905-6916. [PMID: 28813152 DOI: 10.1021/acs.jpca.7b04344] [Citation(s) in RCA: 56] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
16
Mishra AK, Weissman H, Krieg E, Votaw KA, McCullagh M, Rybtchinski B, Lewis FD. Self‐Assembly of Perylenediimide–Single‐Strand‐DNA Conjugates: Employing Hydrophobic Interactions and DNA Base‐Pairing To Create a Diverse Structural Space. Chemistry 2017;23:10328-10337. [DOI: 10.1002/chem.201700752] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/16/2017] [Indexed: 01/05/2023]
17
Astakhova K, Golovin AV, Prokhorenko IA, Ustinov AV, Stepanova IA, Zatsepin TS, Korshun VA. Design of 2′-phenylethynylpyrene excimer forming DNA/RNA probes for homogeneous SNP detection: The attachment manner matters. Tetrahedron 2017. [DOI: 10.1016/j.tet.2017.04.045] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
18
Kashida H, Asanuma H. Development of Pseudo Base-Pairs on d-Threoninol which Exhibit Various Functions. BULLETIN OF THE CHEMICAL SOCIETY OF JAPAN 2017. [DOI: 10.1246/bcsj.20160371] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
19
KASHIDA H, ASANUMA H. Development of Pseudo Base Pairs Which Show High DNA Duplex Stabilities and Orthogonality. KOBUNSHI RONBUNSHU 2017. [DOI: 10.1295/koron.2017-0009] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
20
Crnolatac I, Rogan I, Majić B, Tomić S, Deligeorgiev T, Horvat G, Makuc D, Plavec J, Pescitelli G, Piantanida I. Small molecule probes finely differentiate between various ds- and ss-DNA and RNA by fluorescence, CD and NMR response. Anal Chim Acta 2016;940:128-35. [PMID: 27662767 DOI: 10.1016/j.aca.2016.08.021] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/15/2016] [Revised: 08/10/2016] [Accepted: 08/11/2016] [Indexed: 01/24/2023]
21
Kim KT, Choi TS, Kim KY, Kim HI, Kim BH. Disassembly of Chromophore-Guided DNA Duplexes through Site-Selective Binding of Coralyne to Pyrene-Modified Adenine Bases. Chempluschem 2016;81:590-593. [DOI: 10.1002/cplu.201600230] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/03/2016] [Indexed: 11/06/2022]
22
Kundu R. G-Tetraplex-Induced FRET within Telomeric Repeat Sequences Using (Py) A-(Per) A as Energy Donor-Acceptor Pair. Chem Asian J 2015;11:198-201. [PMID: 26490798 DOI: 10.1002/asia.201500996] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/16/2015] [Indexed: 01/08/2023]
23
Giri L, Pedireddi V. Exploration of supramolecular assemblies of rac-1,3-cyclohexanedicarboxylic acid. J Mol Struct 2015. [DOI: 10.1016/j.molstruc.2015.07.064] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
24
Würthner F, Saha-Möller CR, Fimmel B, Ogi S, Leowanawat P, Schmidt D. Perylene Bisimide Dye Assemblies as Archetype Functional Supramolecular Materials. Chem Rev 2015;116:962-1052. [PMID: 26270260 DOI: 10.1021/acs.chemrev.5b00188] [Citation(s) in RCA: 994] [Impact Index Per Article: 110.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
25
Sanju KS, Thurakkal S, Neelakandan PP, Joseph J, Ramaiah D. Simultaneous binding of a cyclophane and classical intercalators to DNA: observation of FRET-mediated white light emission. Phys Chem Chem Phys 2015;17:13495-500. [DOI: 10.1039/c5cp00208g] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]
26
Xu Z, Guo K, Yu J, Sun H, Tang J, Shen J, Müllen K, Yang W, Yin M. A unique perylene-based DNA intercalator: localization in cell nuclei and inhibition of cancer cells and tumors. SMALL (WEINHEIM AN DER BERGSTRASSE, GERMANY) 2014;10:4087-4092. [PMID: 24976526 DOI: 10.1002/smll.201401262] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/08/2014] [Revised: 05/22/2014] [Indexed: 06/03/2023]
27
Probst M, Langenegger SM, Häner R. A modular LHC built on the DNA three-way junction. Chem Commun (Camb) 2014;50:159-61. [PMID: 24177922 DOI: 10.1039/c3cc47490a] [Citation(s) in RCA: 39] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
28
Manicardi A, Guidi L, Ghidini A, Corradini R. Pyrene-modified PNAs: Stacking interactions and selective excimer emission in PNA2DNA triplexes. Beilstein J Org Chem 2014;10:1495-503. [PMID: 25161706 PMCID: PMC4142857 DOI: 10.3762/bjoc.10.154] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/11/2014] [Accepted: 06/03/2014] [Indexed: 12/17/2022]  Open
29
Markova LI, Malinovskii VL, Patsenker LD, Häner R. J- vs. H-type assembly: pentamethine cyanine (Cy5) as a near-IR chiroptical reporter. Chem Commun (Camb) 2013;49:5298-300. [PMID: 23636273 DOI: 10.1039/c3cc42103a] [Citation(s) in RCA: 54] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
30
Evaluation of intrinsic spectroscopic properties of chromophore assemblies by shielding with cyclohexyl base pairs within a DNA duplex. Bioorg Med Chem 2013;21:6191-7. [DOI: 10.1016/j.bmc.2013.04.032] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/07/2013] [Revised: 03/28/2013] [Accepted: 04/05/2013] [Indexed: 11/21/2022]
31
Kaura M, Kumar P, Hrdlicka PJ. Synthesis and hybridization properties of oligonucleotides modified with 5-(1-aryl-1,2,3-triazol-4-yl)-2'-deoxyuridines. Org Biomol Chem 2013;10:8575-8. [PMID: 23042241 DOI: 10.1039/c2ob26717a] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
32
Niko Y, Kawauchi S, Otsu S, Tokumaru K, Konishi GI. Fluorescence enhancement of pyrene chromophores induced by alkyl groups through σ-π conjugation: systematic synthesis of primary, secondary, and tertiary alkylated pyrenes at the 1, 3, 6, and 8 positions and their photophysical properties. J Org Chem 2013;78:3196-207. [PMID: 23425392 DOI: 10.1021/jo400128c] [Citation(s) in RCA: 62] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/17/2023]
33
Kato T, Kashida H, Kishida H, Yada H, Okamoto H, Asanuma H. Development of a Robust Model System of FRET using Base Surrogates Tethering Fluorophores for Strict Control of Their Position and Orientation within DNA Duplex. J Am Chem Soc 2013;135:741-50. [DOI: 10.1021/ja309279w] [Citation(s) in RCA: 60] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]
34
Biner SM, Häner R. DNA Triplex-Mediated Assembly of Polyaromatic Chromophores. Chem Biodivers 2012;9:2485-93. [DOI: 10.1002/cbdv.201200276] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/24/2012] [Indexed: 12/22/2022]
35
Dohno C, Shibata T, Okazaki M, Makishi S, Nakatani K. Amphiphilic DNA Duplex Stabilized by a Hydrophobic Zipper. European J Org Chem 2012. [DOI: 10.1002/ejoc.201200540] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
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