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Satapathi D, Das M, Das UK, Laha S, Kundu P, Choudhuri I, Bhattacharya N, Samanta BC, Chattopadhyay N, Maity T. Experimental and molecular modelling demonstration of effective DNA and protein binding as well as anticancer potential of two mononuclear Cu(II) and Co(II) complexes with isothiocyanate and azide as anionic residues. Int J Biol Macromol 2024; 275:133716. [PMID: 38977049 DOI: 10.1016/j.ijbiomac.2024.133716] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/27/2024] [Revised: 07/03/2024] [Accepted: 07/05/2024] [Indexed: 07/10/2024]
Abstract
In the present study, one mononuclear Cu(II) [CuL(SCN)] (1) and one mononuclear Co(II) [CoLN3] (2) complexes, with a Schiff base ligand (HL) formed by condensation of 2-picolylamine and salicylaldehyde, have been successfully developed and structurally characterized. The square planer geometry of both complexes is fulfilled by the coordination of one deprotonated ligand and one ancillary ligand SCN-(1) or N3-(2) to the metal centre. Binding affinities of both complexes with deoxyribonucleic acid (DNA) and human serum albumin (HSA) are investigated using several biophysical and spectroscopic techniques. High values of the macromolecule-complex binding constants and other results confirm the effectiveness of both complexes towards binding with DNA and HSA. The determined values of the thermodynamic parameters support spontaneous interactions of both complexes with HSA, while fluorescence displacement and DNA melting studies establish groove-binding interactions with DNA for both complexes 1 and 2. The molecular modelling study validates the experimental findings. Both complexes are subjected to an MTT test establishing the anticancer property of complex 1 with lower risk to normal cells, confirmed by the IC50 values of the complex for HeLa cancer cells and HEK normal cells. Finally, a nuclear staining analysis reveals that the complexes have caused apoptotic cell death.
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Affiliation(s)
- Dibyendu Satapathi
- Department of Chemistry, Prabhat Kumar College, Purba Medinipur, Contai, West Bengal 721404, India
| | - Manik Das
- Department of Chemistry, Prabhat Kumar College, Purba Medinipur, Contai, West Bengal 721404, India
| | - Uttam Kumar Das
- Department of Chemistry, School of Physical Science, Mahatma Gandhi Central University, Bihar, India
| | - Soumik Laha
- Indian Institute of Chemical Biology, Jadavpur, Kolkata, West Bengal, India
| | - Pronab Kundu
- Department of Chemistry, Presidency University, Yelahanka, Bengaluru 560064, India
| | - Indranil Choudhuri
- Department of Biotechnology, Panskura Banamali College, Panskura, West Bengal, India
| | - Nandan Bhattacharya
- Department of Biotechnology, Panskura Banamali College, Panskura, West Bengal, India
| | | | | | - Tithi Maity
- Department of Chemistry, Prabhat Kumar College, Purba Medinipur, Contai, West Bengal 721404, India.
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2
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Adak S, Rahaman SA, Karmakar S, Bandyopadhyay S. An Emission-Based Probe for the Detection and Quantification of DNA and RNA. Chem Asian J 2024; 19:e202400400. [PMID: 38779709 DOI: 10.1002/asia.202400400] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/11/2024] [Revised: 05/20/2024] [Accepted: 05/22/2024] [Indexed: 05/25/2024]
Abstract
Sequence-independent detection of low concentrations of nucleic acids is important for applications in forensics and diagnostics. An emission-based probe for detecting and quantifying DNA and RNA utilizing a water-soluble dicationic tetraphenylethene (TPE) derivativewas developed. The recognition is based on the electrostatic and other non-covalent interactions between the phosphate backbone of nucleic acids and the cationic probe, which cause the restriction of rotation of the aryl units of the probe, ensuing in the enhancement of the fluorescence signal. The binding was validated by different spectroscopic techniques and also by electrophoretic mobility shift assay. The probable mode of binding with the nucleic acids was studied by blind-docking studies that correlated well with the experimental results.
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Affiliation(s)
- Soumen Adak
- Department of Chemical Sciences, Indian Institute of Science Education and Research (IISER) Kolkata, Mohanpur, Nadia, WB 741246, India
| | - Sk Atiur Rahaman
- Department of Chemical Sciences, Indian Institute of Science Education and Research (IISER) Kolkata, Mohanpur, Nadia, WB 741246, India
| | - Susnata Karmakar
- Department of Physiology, Development and Neuroscience, University of Cambridge, Cambridge, England, United Kingdom
| | - Subhajit Bandyopadhyay
- Department of Chemical Sciences, Indian Institute of Science Education and Research (IISER) Kolkata, Mohanpur, Nadia, WB 741246, India
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3
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Amir M, Aamir Qureshi M, Khan A, Nayeem SM, Ayoub Malik W, Javed S. Exploring the interaction of tepotinib with calf thymus DNA using molecular dynamics simulation and multispectroscopic techniques. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2024; 308:123678. [PMID: 38039637 DOI: 10.1016/j.saa.2023.123678] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/03/2023] [Revised: 10/05/2023] [Accepted: 11/21/2023] [Indexed: 12/03/2023]
Abstract
In recent times, there has been a surge in the discovery of drugs that directly interact with DNA, influencing gene expression. As a result, understanding how biomolecules interact with DNA has become a major area of research. One such drug is Tepotinib (TPT), an FDA-approved anti-cancer medication known as a MET tyrosine kinase inhibitor, used in chemotherapy for metastatic non-small cell lung cancer (NSCLC) with MET exon 14 skipping alterations. In our study, we adopted both biophysical and in-silico methods to investigate the binding relationship of TPT and ctDNA. The absorption spectra of ctDNA exhibited a hypochromic effect when titrated with TPT and the binding constant of TPT-ctDNA complex was calculated, Ka = 9.91 × 104 M-1. By computing bimolecular enhancement constant (KB) and thermodynamic enhancement constant (KD) in fluorometric investigations, it was found that the fluorescence enhancement is a result of a static process involving the ctDNA-TPT complex formation in the ground state, as opposed to a dynamic process. The displacement assay results further supported this finding, showing that TPT exhibits a binding preference for minor groove of ct-DNA and was also demonstrated by KI quenching and CD spectroscopy. The molecular docking and molecular dynamic simulations validated TPT's groove binding nature and binding pattern with ctDNA, respectively. Thus, the results of our present investigation offer valuable insights into the interaction between TPT and ctDNA. It is evident that TPT, as an anti-cancer medication, binds to the minor groove of ctDNA.
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Affiliation(s)
- Mohd Amir
- Department of Biochemistry, Faculty of Life Sciences, Aligarh Muslim University, Aligarh 202002, India.
| | - Mohd Aamir Qureshi
- Department of Biochemistry, Faculty of Life Sciences, Aligarh Muslim University, Aligarh 202002, India.
| | - Ashma Khan
- Department of Chemistry, Faculty of Sciences, Aligarh Muslim University, Aligarh 202002, India.
| | - Shahid M Nayeem
- Department of Chemistry, Faculty of Sciences, Aligarh Muslim University, Aligarh 202002, India.
| | - Waseem Ayoub Malik
- Department of Biochemistry, Faculty of Life Sciences, Aligarh Muslim University, Aligarh 202002, India.
| | - Saleem Javed
- Department of Biochemistry, Faculty of Life Sciences, Aligarh Muslim University, Aligarh 202002, India.
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Ding L, Liu Y, Wang L, Yang Y. Distinguishing the responsive mechanisms of fluorescent probes to hydrogen peroxide, proteins, and DNA/RNA. Phys Chem Chem Phys 2024; 26:7765-7771. [PMID: 38372974 DOI: 10.1039/d4cp00082j] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/20/2024]
Abstract
The responsive mechanisms of cationic quinolinium-vinyl-N,N-dimethylaniline boronate (QVD-B) derivative probes to hydrogen peroxide (H2O2), proteins and DNA/RNA are theoretically investigated in this study. The potential energy curves of QVD-B scanned on a dihedral angle (N+-C-CC) in the first singlet (S1) state exhibit large torsional energy barriers. Additionally, the energy of the lowest unoccupied molecular orbital (LUMO) of an acceptor moiety (-3.14 eV) is lower than that of a donor moiety (-1.13 eV) in QVD-B. This demonstrates that photoinduced electron transfer (PET) quenches the fluorescence of QVD-B, as opposed to the previous report of intramolecular single-bond rotation. After reacting with H2O2, the reaction product of quinoline-vinyl-N,N-dimethylaniline (QVD) turns off the PET pathway and turns on the fluorescence at 550 nm, which is consistent with the experimental results (580 nm). Among the possible configurations of QVD-B that forms with proteins and DNA, the calculated fluorescence values of corresponding twisted QVD-B-P (638 nm) and QVD-B-D (686 nm) are consistent with the experimental results (632 and 688 nm). The frontier molecular orbital and electron-hole analysis show that the charge transfer distance follows the order of QVD (1.88 Å) < QVD-B-P (4.49 Å) < QVD-B-D (6.39 Å), which induces the fluorescence red-shifts of QVD-B-P and QVD-B-D compared to that of QVD. The multi-detection mechanism of the fluorescent probe QVD-B is attributed to PET progress and different degrees of local charge transfer after photoexcitation.
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Affiliation(s)
- Lina Ding
- School of Chemistry and Chemical Engineering, School of Physics, Henan Normal University, Xinxiang 453007, P. R. China.
| | - Yang Liu
- School of Chemistry and Chemical Engineering, School of Physics, Henan Normal University, Xinxiang 453007, P. R. China.
| | - Liang Wang
- School of Chemistry and Chemical Engineering, School of Physics, Henan Normal University, Xinxiang 453007, P. R. China.
| | - Yonggang Yang
- School of Chemistry and Chemical Engineering, School of Physics, Henan Normal University, Xinxiang 453007, P. R. China.
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Lavanya K, Saranya J, Bodapati ATS, Reddy RS, Madku SR, Sahoo BK. Biophysical insights on the interaction of anticoagulant drug dicoumarol with calf thymus-DNA: deciphering the binding mode and binding force with thermodynamics. J Biomol Struct Dyn 2024; 42:1392-1403. [PMID: 37038635 DOI: 10.1080/07391102.2023.2199872] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/13/2022] [Accepted: 03/31/2023] [Indexed: 04/12/2023]
Abstract
The biological activity of drugs is exhibited due to their interactions with bio-receptors. Dicoumarol (DIC) is a natural hydroxycoumarin and a well-known anticoagulant. DNA is the genetic material and one of the targets of numerous drugs. The interaction of DIC with calf-thymus DNA (ct-DNA) has been studied using different biophysical techniques and docking studies. The binding constant in the order of 103 to 104 M-1 was observed from spectroscopic studies. Thermodynamic studies at 4 different temperatures revealed the spontaneity of the interaction with the entropy-driven process. Marker displacement studies with competitive markers of intercalators (ethidium bromide) and groove binders (Hoechst 33258) confirmed the groove-binding nature of DIC in DNA. The groove-binding mode of DIC was complemented by different studies like viscosity measurements, DNA melting, and the effect of KI on the binding. A minor perturbation in the DNA viscosity and no significant change in the DNA melting temperature (Tm) after binding with DIC further confirms the groove binding mode. The effect of KI on the DIC and DIC-DNA system suggested the absence of DIC intercalation. The absence of significant electrostatic force was revealed from the ionic-strength effect study. Binding-induced conformational variation in ct-DNA was absent in circular dichroism studies. Molecular docking studies suggested the position of DIC within the minor groove of ct-DNA, covering three base pairs long. The outcome of this report may help in understanding the pharmacodynamics and pharmacokinetics of dicoumarol analogs and related molecules.Communicated by Ramaswamy H. Sarma.
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Affiliation(s)
- K Lavanya
- Department of H&S (Chemistry), Gokaraju Rangaraju Institute of Engineering and Technology, Hyderabad, India
- Department of Chemistry, GITAM School of Science, GITAM Deemed to be University Hyderabad Campus, Hyderabad, India
| | - Jagadeesan Saranya
- Department of H&S (Chemistry), Gokaraju Rangaraju Institute of Engineering and Technology, Hyderabad, India
| | - Anna Tanuja Safala Bodapati
- Department of Chemistry, GITAM School of Science, GITAM Deemed to be University Hyderabad Campus, Hyderabad, India
- Chemistry Division, BS&H Department, BVRIT College of Engineering for Women, Hyderabad, India
| | - Ragaiahgari Srinivas Reddy
- Department of Chemistry, GITAM School of Science, GITAM Deemed to be University Hyderabad Campus, Hyderabad, India
- Department of Chemistry, B. V. Raju Institute of Technology (BVRIT), Narsapur, India
| | - Shravya Rao Madku
- Department of Chemistry, GITAM School of Science, GITAM Deemed to be University Hyderabad Campus, Hyderabad, India
- Department of Chemistry, St. Francis College for Women, Hyderabad, India
| | - Bijaya Ketan Sahoo
- Department of Chemistry, GITAM School of Science, GITAM Deemed to be University Hyderabad Campus, Hyderabad, India
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Mudi A, Ray S, Bera M, Dolai M, Das M, Kundu P, Laha S, Choudhuri I, Chandra Samanta B, Bhattacharyya N, Maity T. A multi-spectroscopic and molecular docking approach for DNA/protein binding study and cell viability assay of first-time reported pendent azide bearing Cu(II)-quercetin and dicyanamide bearing Zn(II)-quercetin complexes. Heliyon 2023; 9:e22712. [PMID: 38125469 PMCID: PMC10731082 DOI: 10.1016/j.heliyon.2023.e22712] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/27/2023] [Revised: 11/16/2023] [Accepted: 11/16/2023] [Indexed: 12/23/2023] Open
Abstract
In the current study, one new quercetin-based Zn(II) complex [Zn(Qr)(CNNCN)(H2O)2] (Complex 1) which is developed by condensation of quercetin with ZnCl2 in the presence of NaN(CN)2 and Cu(II) complex [Cu(Qr)N3(CH3OH)(H2O)] (complex 2) which is developed by the condensation reaction of quercetin and CuCl2 in presence of NaN3, are thoroughly examined in relation to their use in biomedicine. The results of several spectroscopic studied confirm the structure of both the complexes and the Density Functional Theory (DFT) study helps to optimize the structure of complex 1 and 2. After completion of the identification process, DNA and Human Serum Albumin (HSA) binding efficacy of both the investigated complexes are performed by implementing a long range of biophysical studies and a thorough analysis of the results unveils that complex 1 has better interaction efficacy with the macromolecules than complex 2. The binding efficacy of complex 1 is comparatively higher towards both macromolecules because of its pure groove binding mode during interaction with DNA and the presence of an extra H-bond during connection with HSA. The experimental host-guest binding results is fully validated by molecular docking study. Interestingly complex 1 shows better antioxidant properties than complex 2, as well as quercetin, and it has strong anticancer property with minimal damage to normal cells, which is proved by the MTT assay study. Better DNA and HSA binding efficacy of 1 may be the reason for the better anticancer property of complex 1.
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Affiliation(s)
- Anupam Mudi
- Department of Botany, Behala College, Behala, India
| | - Shubham Ray
- Department of Chemistry, Prabhat Kumar College, Contai, Contai, Purba Medinipur, 721404, India
| | - Manjushree Bera
- Department of Nutrition, Prabhat Kumar College, Contai, Contai, Purba Medinipur, 721404, India
| | - Malay Dolai
- Department of Chemistry, Prabhat Kumar College, Contai, Contai, Purba Medinipur, 721404, India
| | - Manik Das
- Department of Chemistry, Prabhat Kumar College, Contai, Contai, Purba Medinipur, 721404, India
| | - Pronab Kundu
- Department of Chemistry, Presidency University, Yelahanka, Bengaluru, 560064, India
| | | | | | | | | | - Tithi Maity
- Department of Chemistry, Prabhat Kumar College, Contai, Contai, Purba Medinipur, 721404, India
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Fioravanço LP, Pôrto JB, Martins FM, Siqueira JD, Iglesias BA, Rodrigues BM, Chaves OA, Back DF. A Vanadium(V) complexes derived from pyridoxal/salicylaldehyde. Interaction with CT-DNA/HSA, and molecular docking assessments. J Inorg Biochem 2023; 239:112070. [PMID: 36450221 DOI: 10.1016/j.jinorgbio.2022.112070] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/26/2022] [Revised: 11/11/2022] [Accepted: 11/13/2022] [Indexed: 11/19/2022]
Abstract
With the increasing development of metallopharmaceuticals, coordination compounds become viable alternatives for therapeutic uses. Despite the importance of platinum derivatives in this area, first-row transition metals complexes are welcome due to their characteristics. Vanadium is a promising metal in this context, as it has a range of compounds with different biological applications, including anticancer therapeutic effects. In this effort, the study of interactions between coordination compounds with deoxyribonucleic acid and with human serum albumin is fundamental. In this way, ten iminic ligands were synthesized by condensing p-substituted aromatic benzohydrazides (OH, CH3, H, NO2, and NH2) with salicylaldehyde (L1As-L5As) or pyridoxal hydrochloride (L1P-L5P). These ligands have characteristics that allow the tridentate coordination of vanadium cations, leading to the formation of ten vanadium(V) complexes (C1As-C5As and C1P-C5P) with different structural features, all characterized by single-crystal X-ray diffraction, UV-Vis and infrared spectroscopies, and cyclic voltammetry. In addition, the complexes were tested for their interactions with calf thymus deoxyribonucleic acid and human serum albumin by spectroscopic assays and molecular docking calculations. These new results can contribute to further research and provide different ways to design new vanadium complexes with biological applications.
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Affiliation(s)
- Letícia Paiva Fioravanço
- Laboratory of Inorganic Materials, Department of Chemistry, CCNE, UFSM, Santa Maria, RS 97105-900, Brazil
| | - Juliana Bortoluzzi Pôrto
- Laboratory of Inorganic Materials, Department of Chemistry, CCNE, UFSM, Santa Maria, RS 97105-900, Brazil
| | - Francisco Mainardi Martins
- Laboratory of Inorganic Materials, Department of Chemistry, CCNE, UFSM, Santa Maria, RS 97105-900, Brazil
| | - Josiéli Demetrio Siqueira
- Laboratory of Inorganic Materials, Department of Chemistry, CCNE, UFSM, Santa Maria, RS 97105-900, Brazil
| | - Bernardo Almeida Iglesias
- Laboratory of Bioinorganic and Porphyrin Materials, Department of Chemistry, CCNE, UFSM, Santa Maria, RS 97105-900, Brazil
| | - Bruna Matiuzzi Rodrigues
- Laboratory of Bioinorganic and Porphyrin Materials, Department of Chemistry, CCNE, UFSM, Santa Maria, RS 97105-900, Brazil
| | - Otávio Augusto Chaves
- Coimbra Chemistry Center, Department of Chemistry, University of Coimbra, Rua Larga N°2, 3004-535, Coimbra, Portugal
| | - Davi Fernando Back
- Laboratory of Inorganic Materials, Department of Chemistry, CCNE, UFSM, Santa Maria, RS 97105-900, Brazil.
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Liu J, Chen Y, Yao B, Cai S, Li X, Leng Y, Cai X. A novel fluorescent probe based on cyanoacetyl indole derivative for highly selective and sensitive detection of HPO42−. Tetrahedron Lett 2022. [DOI: 10.1016/j.tetlet.2022.154075] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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9
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Wang D, Liu M, Wu Y, Weng T, Wang L, Zhang Y, Zhao Y, Han J. Idarubicin/mithramycin-acridine orange combination drugs co-loaded by DNA nanostructures: Different effects of intercalation and groove binding on drug release and cytotoxicity. J Mol Liq 2022. [DOI: 10.1016/j.molliq.2022.118947] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
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10
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Goswami S, Ghosh R, Prasanthan P, Kishore N. Mode of interaction of altretamine with calf thymus DNA: biophysical insights. J Biomol Struct Dyn 2022; 41:3728-3740. [PMID: 35343872 DOI: 10.1080/07391102.2022.2054472] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
Abstract
Insights into drug-DNA interactions have importance in medicinal chemistry as it has a major role in the evolution of new therapeutic drugs. Therefore, binding studies of small molecules with DNA are of significant interest. Spectroscopy, coupled with measurements of viscosity and molecular docking studies were employed to obtain mechanistic insights into the binding of altretamine with calf thymus DNA (CT-DNA). The UV-visible spectroscopic measurements study confirmed altretamine-CT-DNA complex formation with affinity constant ([15.68 ± 0.04] × 103 M-1), a value associated with groove binding phenomenon. The associated thermodynamic signatures suggest enthalpically driven interactions. The values of standard molar free energy change (ΔGmo) -(23.93 ± 0.23) kJ mol-1, enthalpy change (ΔvHHmo) -(50.84 ± 0.19) kJ mol-1 and entropy change (ΔSmo) -(90.29 ± 0.12) JK-1 mol-1 indicate the binding is thermodynamically favorable and an important role of the hydrogen bonds and Van der Waals interactions in the binding of altretamine with CT-DNA. Circular dichroism spectroscopy indicated insignificant conformational changes in the DNA backbone upon interaction with altretamine suggesting no distortion and/or unstacking of the base pairs in the DNA helix. UV-melting study suggested that the thermal stability of the DNA backbone is not affected by the binding of the drug. Competitive displacement assays with ethidium bromide, Hoechst-33258 and DAPI established the binding of altretamine with CT-DNA in the minor groove. The mode of binding was further confirmed by viscosity and molecular docking studies. Molecular docking further ascertained binding of altretamine in the minor groove of the CT-DNA, preferably with the A-T rich sequences.
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Affiliation(s)
- Sathi Goswami
- Department of Chemistry, Indian Institute of Technology Bombay, Maharashtra, India
| | - Ritutama Ghosh
- Department of Chemistry, Indian Institute of Technology Bombay, Maharashtra, India
| | - Pooja Prasanthan
- Department of Chemistry, Indian Institute of Technology Bombay, Maharashtra, India
| | - Nand Kishore
- Department of Chemistry, Indian Institute of Technology Bombay, Maharashtra, India
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Mahmoudi-Moghaddam H, Garkani-Nejad Z. A new electrochemical DNA biosensor for determination of anti-cancer drug chlorambucil based on a polypyrrole/flower-like platinum/NiCo 2O 4/pencil graphite electrode. RSC Adv 2022; 12:5001-5011. [PMID: 35425519 PMCID: PMC8981350 DOI: 10.1039/d1ra08291d] [Citation(s) in RCA: 12] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/11/2021] [Accepted: 01/27/2022] [Indexed: 01/05/2023] Open
Abstract
In the current study, DNA immobilization was performed on pencil graphite (PG) modified with a polypyrrole (PPy) and flower-like Pt/NiCo2O4 (FL-Pt/NiCo2O4) nanocomposite, as a new sensitive electrode to detect chlorambucil (CHB). Energy dispersive X-ray (EDX) analysis, X-ray diffraction (XRD) and scanning electron microscopy (SEM) techniques were employed to characterize the synthesized FL-Pt/NiCo2O4 and PPy/FL-Pt/NiCo2O4 nanocomposites. Moreover, differential pulse voltammetry (DPV) was selected to assess the guanine and adenine electrochemical responses on the DNA sensor. The CHB determination was performed using the maximum currents towards adenine and guanine in the acetate buffer solution (ABS). According to the results, ds-DNA/PPy/FL-Pt/NiCo2O4/PGE was able to detect the different concentrations of CHB in the range between 0.018 and 200 μM, with a detection limit of (LOD) of 4.0 nM. The new biosensor was also exploited for CHB determination in real samples (serum, urine and drug), the results of which revealed excellent recoveries (97.5% to 103.8%). Furthermore, the interaction between ds-DNA and CHB was studied using electrochemistry, spectrophotometry and docking whose outputs confirmed their effective interaction.
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Affiliation(s)
- Hadi Mahmoudi-Moghaddam
- Chemistry Department, Faculty of Science, Shahid Bahonar University of Kerman Kerman Iran +98 3433257433
| | - Zahra Garkani-Nejad
- Chemistry Department, Faculty of Science, Shahid Bahonar University of Kerman Kerman Iran +98 3433257433
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Self-assembled DNA nanotrains for targeted delivery of mithramycin dimers coordinated by different metal ions: Effect of binding affinity on drug loading, release and cytotoxicity. J Mol Liq 2021. [DOI: 10.1016/j.molliq.2021.116722] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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13
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van der Westhuizen D, Slabber CA, Fernandes MA, Joubert DF, Kleinhans G, van der Westhuizen CJ, Stander A, Munro OQ, Bezuidenhout DI. A Cytotoxic Bis(1,2,3-triazol-5-ylidene)carbazolide Gold(III) Complex Targets DNA by Partial Intercalation. Chemistry 2021; 27:8295-8307. [PMID: 33822431 PMCID: PMC8251726 DOI: 10.1002/chem.202100598] [Citation(s) in RCA: 14] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/15/2021] [Indexed: 12/13/2022]
Abstract
The syntheses of bis(triazolium)carbazole precursors and their corresponding coinage metal (Au, Ag) complexes are reported. For alkylated triazolium salts, di- or tetranuclear complexes with bridging ligands were isolated, while the bis(aryl) analogue afforded a bis(carbene) AuI -CNC pincer complex suitable for oxidation to the redox-stable [AuIII (CNC)Cl]+ cation. Although the ligand salt and the [AuIII (CNC)Cl]+ complex were both notably cytotoxic toward the breast cancer cell line MDA-MB-231, the AuIII complex was somewhat more selective. Electrophoresis, viscometry, UV-vis, CD and LD spectroscopy suggest the cytotoxic [AuIII (CNC)Cl]+ complex behaves as a partial DNA intercalator. In silico screening indicated that the [AuIII (CNC)Cl]+ complex can target DNA three-way junctions with good specificity, several other regular B-DNA forms, and Z-DNA. Multiple hydrophobic π-type interactions involving T and A bases appear to be important for B-form DNA binding, while phosphate O⋅⋅⋅Au interactions evidently underpin Z-DNA binding. The CNC ligand effectively stabilizes the AuIII ion, preventing reduction in the presence of glutathione. Both the redox stability and DNA affinity of the hit compound might be key factors underpinning its cytotoxicity in vitro.
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Affiliation(s)
| | - Cathryn A. Slabber
- Molecular Sciences InstituteSchool of ChemistryUniversity of the Witwatersrand2050JohannesburgSouth Africa
| | - Manuel A. Fernandes
- Molecular Sciences InstituteSchool of ChemistryUniversity of the Witwatersrand2050JohannesburgSouth Africa
| | - Daniël F. Joubert
- Department of PhysiologyUniversity of Pretoria0031PretoriaSouth Africa
| | - George Kleinhans
- Molecular Sciences InstituteSchool of ChemistryUniversity of the Witwatersrand2050JohannesburgSouth Africa
- Chemistry DepartmentUniversity of Pretoria0028PretoriaSouth Africa
| | - C. Johan van der Westhuizen
- Chemistry DepartmentUniversity of Pretoria0028PretoriaSouth Africa
- Future Production: ChemicalsPharmaceutical Technologies Research GroupCouncil for Scientific and Industrial Research (CSIR)0184PretoriaSouth Africa
| | - André Stander
- Department of PhysiologyUniversity of Pretoria0031PretoriaSouth Africa
| | - Orde Q. Munro
- Molecular Sciences InstituteSchool of ChemistryUniversity of the Witwatersrand2050JohannesburgSouth Africa
| | - Daniela I. Bezuidenhout
- Molecular Sciences InstituteSchool of ChemistryUniversity of the Witwatersrand2050JohannesburgSouth Africa
- Laboratory of Inorganic ChemistryEnvironmental and Chemical EngineeringUniversity of Oulu3000OuluFinland
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14
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Abhijna Krishna R, Dheepika R, Muralisankar M, Nagarajan S. Microwave-assisted synthesis and DNA-binding studies of half-sandwich ruthenium(II) arene complexes containing phenanthroimidazole-triarylamine hybrids. J COORD CHEM 2021. [DOI: 10.1080/00958972.2021.1885650] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
Affiliation(s)
| | | | | | - Samuthira Nagarajan
- Department of Chemistry, Central University of Tamil Nadu, Thiruvarur, India
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15
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Mondal P, Sengupta P, Pal U, Saha S, Bose A. Biophysical and theoretical studies of the interaction between a bioactive compound 3,5-dimethoxy-4-hydroxycinnamic acid with calf thymus DNA. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2021; 245:118936. [PMID: 32977108 DOI: 10.1016/j.saa.2020.118936] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/04/2020] [Revised: 08/12/2020] [Accepted: 09/07/2020] [Indexed: 06/11/2023]
Abstract
3,5-Dimethoxy-4-hydroxycinnamic acid commonly known as Sinapic acid is a well-known derivative of hydroxycinnamic acids, is commonly present in human diet. Due to its wide variety of pharmacological activities like antioxidant, antimicrobial, anti-inflammatory, anticancer, and anti-anxiety, it has attracted much attention for the researchers. In our previous published work we have already analyzed the interaction between sinapic acid (SA) with a model transport protein. In this work our aim is to demonstrate a detailed investigation of the binding interaction between sinapic acid with another carrier of genetic information in a living cell, the DNA. Here we have used calf thymus DNA (ct-DNA) as a model. The binding characteristic of SA with ct-DNA was investigated by different spectroscopic and theoretical tools. The spectroscopic investigation revealed that quenching of intrinsic fluorescence of SA by ct-DNA occurs through dynamic quenching mechanism. The thermodynamic parameters established the involvement of hydrogen bonding and weak van der Waals forces in the interaction. Further, the circular dichroism, competitive binding experiment with ethidium bromide and potassium iodide quenching experiment suggested that SA possibly binds to the groove position of the ct-DNA. Finally, molecular docking analysis established the SA binds to minor groove position of ct-DNA in G-C rich region through hydrogen bonding interaction. Additionally, gel electrophoresis analysis has been performed to determine the protective efficacy of SA against UVB induced DNA damage and 50 μM of SA was found to protect the DNA from UVB induced damage. We hope that our study could provide the validation of SA on behalf of therapeutics and development of next generation therapeutic drug as well as designing new efficient drug molecule and methodology for the interaction study of the drug with DNA.
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Affiliation(s)
- Prasenjit Mondal
- Department of Chemistry, Presidency University, 86/1 College Street, Kolkata, West Bengal, India
| | - Priti Sengupta
- Department of Chemistry, Presidency University, 86/1 College Street, Kolkata, West Bengal, India
| | - Uttam Pal
- Technical Research Centre, S.N. Bose National Centre for Basic Sciences, JD Block, Sector III, Salt Lake, Kolkata, India
| | - Sutapa Saha
- Department of Life Sciences, Presidency University, 86/1 College Street, Kolkata, West Bengal, India
| | - Adity Bose
- Department of Chemistry, Presidency University, 86/1 College Street, Kolkata, West Bengal, India.
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16
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Oliveira VA, Terenzi H, Menezes LB, Chaves OA, Iglesias BA. Evaluation of DNA-binding and DNA-photocleavage ability of tetra-cationic porphyrins containing peripheral [Ru(bpy)2Cl]+ complexes: Insights for photodynamic therapy agents. JOURNAL OF PHOTOCHEMISTRY AND PHOTOBIOLOGY B-BIOLOGY 2020; 211:111991. [DOI: 10.1016/j.jphotobiol.2020.111991] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/27/2020] [Revised: 06/02/2020] [Accepted: 08/06/2020] [Indexed: 12/16/2022]
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17
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Li N, Hu X, Pan J, Zhang Y, Gong D, Zhang G. Insights into the mechanism of groove binding between 4-octylphenol and calf thymus DNA. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2020; 238:118454. [PMID: 32413714 DOI: 10.1016/j.saa.2020.118454] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/09/2020] [Revised: 05/04/2020] [Accepted: 05/05/2020] [Indexed: 06/11/2023]
Abstract
4-Octylphenol is an endocrine disruptor, belonging to environmental estrogens. It can be enriched in the human body through the food chain and may harm human health. Herein, we used a variety of spectroscopic techniques, molecular docking, and gel electrophoresis to study the interaction of 4-octylphenol and ctDNA. It was found that the mechanism of ctDNA quenching the endogenous fluorescence of 4-octylphenol was static quenching, and formed a complex. The negative enthalpy change (ΔH°), entropy change (ΔS°) and Gibbs free energy (ΔG°) have shown that 4-octylphenol and ctDNA spontaneously bind together under the action of hydrogen bonds and van der Waal's force. Viscosity, melting temperature and iodide quenching experiments showed that 4-octylphenol acted on the groove of ctDNA. Insignificant change in circular dichromism spectra further confirmed this binding mode. The binding sites and groups for 4-octylphenol and ctDNA interaction were identified by molecular docking. Gel electrophoresis found that 4-octylphenol at high concentrations caused DNA cleavage. Above findings may lay a theoretical foundation for understanding the toxicity mechanism of 4-octylphenol.
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Affiliation(s)
- Na Li
- State Key Laboratory of Food Science and Technology, Nanchang University, Nanchang 330047, China
| | - Xing Hu
- State Key Laboratory of Food Science and Technology, Nanchang University, Nanchang 330047, China
| | - Junhui Pan
- State Key Laboratory of Food Science and Technology, Nanchang University, Nanchang 330047, China
| | - Ying Zhang
- Division of Accounting, Nanchang University, Nanchang 330047, China
| | - Deming Gong
- State Key Laboratory of Food Science and Technology, Nanchang University, Nanchang 330047, China; Department of Biomedicine, New Zealand Institute of Natural Medicine Research, Auckland 2104, New Zealand
| | - Guowen Zhang
- State Key Laboratory of Food Science and Technology, Nanchang University, Nanchang 330047, China.
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18
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Pazin WM, Almeida AKA, Manzoni V, Dias JMM, de Abreu ACF, Navarro M, Ito AS, Ribeiro AS, de Oliveira IN. Thermal and solvatochromic effects on the emission properties of a thienyl-based dansyl derivative. RSC Adv 2020; 10:28484-28491. [PMID: 35520094 PMCID: PMC9055963 DOI: 10.1039/d0ra05949h] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/22/2020] [Accepted: 07/16/2020] [Indexed: 12/22/2022] Open
Abstract
Environmental conditions have a profound effect on the photophysical behavior of highly conjugated compounds, which can be exploited in a large variety of applications. In this context, we use a combination of experimental and computational methods to investigate thermal and solvatochromic effects on the fluorescence properties of a dansyl derivative bearing a thienyl substituent, namely 2-(3-thienyl)ethyl dansylglycinate (TEDG). In particular, we analyze how the solvent polarity and temperature affect the ground and excited state energies of TEDG by using time-resolved and steady-state fluorescence techniques. We determine the changes in dipole moment of the TEDG molecule upon photoexcitation, as well as the solvent polarity effects on the excited state lifetime. Besides, we provide theoretical modeling of the HOMO-LUMO orbitals and the vertical absorption and emission energies using time-dependent density functional theory (TDDFT) as well as the polarizable continuum model (PCM) to include the solvent contribution to the absorption and emission energies. Our results show that the emission mechanism of TEDG involves locally excited states derived from hybrid molecular orbitals, accompanied by a moderate variation of the molecular dipole moment upon light excitation. Our findings demonstrate that TEDG exhibits desirable fluorescence properties that make it a promising candidate for use as a photoactive material in electrochromic, optical thermometry, and thermography applications.
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Affiliation(s)
- W M Pazin
- Departamento de Física, Faculdade de Filosofia Ciências e Letras de Ribeirão Preto, Universidade de São Paulo Ribeirão Preto, SP 14040-901 Brazil
- Departamento de Física, Faculdade de Ciências e Tecnologia, Universidade Estadual Paulista Presidente Prudente, SP 19060-900 Brazil
| | - A K A Almeida
- Instituto de Química e Biotecnologia, Universidade Federal de Alagoas Maceió AL 57072-970 Brazil
| | - V Manzoni
- Instituto de Física, Universidade Federal de Alagoas Maceió AL 57072-970 Brazil
| | - J M M Dias
- Departamento de Química Fundamental, CCEN, Universidade Federal de Pernambuco Recife PE 50670-901 Brazil
| | - A C F de Abreu
- Instituto de Física, Universidade Federal de Alagoas Maceió AL 57072-970 Brazil
- Instituto Federal do Piauí, Campus Angical Angical PI 64410-000 Brazil
| | - M Navarro
- Departamento de Química Fundamental, CCEN, Universidade Federal de Pernambuco Recife PE 50670-901 Brazil
| | - A S Ito
- Departamento de Física, Faculdade de Filosofia Ciências e Letras de Ribeirão Preto, Universidade de São Paulo Ribeirão Preto, SP 14040-901 Brazil
| | - A S Ribeiro
- Instituto de Química e Biotecnologia, Universidade Federal de Alagoas Maceió AL 57072-970 Brazil
| | - I N de Oliveira
- Instituto de Física, Universidade Federal de Alagoas Maceió AL 57072-970 Brazil
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19
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Saha T, Kumar P, Sepay N, Ganguly D, Tiwari K, Mukhopadhyay K, Das S. Multitargeting Antibacterial Activity of a Synthesized Mn 2+ Complex of Curcumin on Gram-Positive and Gram-Negative Bacterial Strains. ACS OMEGA 2020; 5:16342-16357. [PMID: 32685797 PMCID: PMC7364437 DOI: 10.1021/acsomega.9b04079] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/30/2019] [Accepted: 06/16/2020] [Indexed: 05/05/2023]
Abstract
Curcumin is an important molecule with a plethora of pharmacological activities and therapeutic potentials. Despite its efficacy, it remained a potential drug candidate owing to hydrolytic instability and poor aqueous solubility. To overcome the limitations related to low solubility, low bioavailability, and the fact that curcumin is never present in solution as a "single unit", its complex was prepared with MnII with the idea that binding to a metal ion might help to resolve these issues. The complex was characterized by elemental and spectral analysis. The structure of the complex was determined by density functional theory calculations. The complex was stable at physiological buffer conditions, unlike curcumin. It did not have any detrimental effect on mammalian cells. There was a significant enhancement in the antibacterial activity of the complex compared to curcumin against both Gram-positive (Staphylococcus aureus) and Gram-negative (Escherichia coli) bacteria. It showed a strong affinity for deoxyribonucleic acid (DNA) evident from a high binding constant value with calf thymus DNA and also from the retarded electrophoretic mobility of bacterial plasmid DNA. The complex showed "superoxide dismutase-like" activity leading to the generation of reactive oxygen species (ROS). The complex caused bacterial membrane perturbation evident from calcein leakage assay, which was further corroborated by scanning and transmission electron microscopic experiments. Overall, the present study shows improved stability and antibacterial potency of a nontoxic complex over curcumin. Its multitargeting mode of action such as ROS-production, effective binding with DNA, and permeabilization of bacterial membrane together allows it to be an effective antibacterial agent that could be taken further for therapeutic use against bacterial infections.
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Affiliation(s)
- Tanmoy Saha
- Department
of Chemistry, Jadavpur University, Kolkata 700032, India
| | - Prince Kumar
- School
of Environmental Sciences, Jawaharlal Nehru
University, New Delhi 110067, India
| | - Nayim Sepay
- Department
of Chemistry, Jadavpur University, Kolkata 700032, India
| | - Durba Ganguly
- Department
of Inorganic Chemistry, Indian Association
for the Cultivation of Science, Kolkata 700032, India
| | - Kanchan Tiwari
- School
of Environmental Sciences, Jawaharlal Nehru
University, New Delhi 110067, India
| | - Kasturi Mukhopadhyay
- School
of Environmental Sciences, Jawaharlal Nehru
University, New Delhi 110067, India
| | - Saurabh Das
- Department
of Chemistry, Jadavpur University, Kolkata 700032, India
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20
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Zhang G, Zhou Z, Xu J, Liao Y, Hu X. Groove binding between ferulic acid and calf thymus DNA: spectroscopic methodology combined with chemometrics and molecular docking studies. J Biomol Struct Dyn 2019; 38:2029-2037. [PMID: 31157597 DOI: 10.1080/07391102.2019.1624194] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Abstract
Ferulic acid (FA), a dietary phenolic acid compound, is proved to possess numerous biological activities. Hence, this study was devoted to explore the interaction between FA and calf thymus DNA (ctDNA) by UV - vis absorption, fluorescence, circular dichroism (CD) spectroscopy combined with multivariate curve resolution-alternating least-squares (MCR - ALS) and molecular docking studies. The concentration curves and the pure spectra of compositions (FA, ctDNA and FA - ctDNA complex) were obtained by MCR - ALS approach to verify and monitor the interaction of FA with ctDNA. The groove binding mode between FA and ctDNA was confirmed by the results of melting analysis, viscosity measurements, single-stranded DNA experiments, and competitive studies. The binding constant of FA - ctDNA complex was 4.87 × 104 L mol-1 at 298 K. The values of enthalpy (ΔH°) and entropy (ΔS°) changes in the interaction were -16.24 kJ mol-1 and 35.02 J mol-1 K-1, respectively, indicating that the main binding forces were hydrogen bonds and hydrophobic interactions. The result of CD spectra suggested that a decrease in right-handed helicity of ctDNA was induced by FA and the DNA conformational transition from the B-form to the A-form. The results of docking indicated that FA binding with ctDNA in the minor groove. These findings may be conducive to understand the interaction mechanism of FA with ctDNA and the pharmacological effects of FA. Communicated by Ramaswamy H. Sarma[Formula: see text].
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Affiliation(s)
- Guowen Zhang
- State Key Laboratory of Food Science and Technology, Nanchang University, Nanchang, China
| | - Zhisheng Zhou
- State Key Laboratory of Food Science and Technology, Nanchang University, Nanchang, China
| | - Jianjian Xu
- State Key Laboratory of Food Science and Technology, Nanchang University, Nanchang, China
| | - Yijing Liao
- State Key Laboratory of Food Science and Technology, Nanchang University, Nanchang, China
| | - Xing Hu
- State Key Laboratory of Food Science and Technology, Nanchang University, Nanchang, China
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21
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Kundu P, Das S, Chattopadhyay N. Managing efficacy and toxicity of drugs: Targeted delivery and excretion. Int J Pharm 2019; 565:378-390. [DOI: 10.1016/j.ijpharm.2019.04.058] [Citation(s) in RCA: 16] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/20/2019] [Revised: 04/17/2019] [Accepted: 04/19/2019] [Indexed: 01/03/2023]
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22
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Bhat IA, Roy B, Hazra P, Kabir-Ud-Din. Conformational and solution dynamics of hemoglobin (Hb) in presence of a cleavable gemini surfactant: Insights from spectroscopy, atomic force microscopy, molecular docking and density functional theory. J Colloid Interface Sci 2019; 538:489-498. [PMID: 30537662 DOI: 10.1016/j.jcis.2018.12.008] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/11/2018] [Revised: 11/19/2018] [Accepted: 12/02/2018] [Indexed: 12/30/2022]
Abstract
Herein, we have explored the conformational alterations of hemoglobin (Hb) in presence of a cleavable gemini surfactant (C16-C4O2-C16). The concerned surfactant was found to induce significant structural perturbations in Hb. UV-vis spectroscopy, steady-state/time-resolved fluorescence, and other utilized techniques have authenticated the complexation of Hb with the gemini surfactant. CD has demonstrated the alterations in secondary structural elements (α-helicity, β-sheet, β-turn, and random coil) of Hb upon C16-C4O2-C16 addition. Atomic force microscopy (AFM) has revealed the existence of unique star-shaped gemini surfactant microstructures aligned to Hb in a necklace pattern. The 1H NMR peak broadening and lower delta values hint at the binding of the concerned gemini surfactant to Hb. Molecular docking and DFT calculations have further substantiated the Hb-gemini complex formation and the involvement of electrostatic/hydrophobic forces therein. In future, these results might pave-the-way to construct self-assembled, sustainable, and green surfactant-protein mixtures for their end-use in industrial, engineering, biomedical, drug delivery, gene transfection, and other relevant excipient formulations.
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Affiliation(s)
- Imtiyaz Ahmad Bhat
- Department of Chemistry, Indian Institute of Science Education and Research (IISER), Pune 411008, Maharashtra, India.
| | - Bibhisan Roy
- Department of Chemistry, Indian Institute of Science Education and Research (IISER), Pune 411008, Maharashtra, India
| | - Partha Hazra
- Department of Chemistry, Indian Institute of Science Education and Research (IISER), Pune 411008, Maharashtra, India
| | - Kabir-Ud-Din
- Department of Chemistry, Arba Minch University, Ethiopia
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23
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Roudini L, NayebZadeh Eidgahi N, Rahimi HR, Saberi MR, Amiri Tehranizadeh Z, Beigoli S, Chamani J. Determining the interaction behavior of calf thymus DNA with berberine hydrochloride in the presence of linker histone: a biophysical study. J Biomol Struct Dyn 2019; 38:364-381. [DOI: 10.1080/07391102.2019.1574240] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Affiliation(s)
- Louisa Roudini
- Department of Biology, Faculty of Sciences, Mashhad Branch, Islamic Azad University, Mashhad, Iran
| | - Negar NayebZadeh Eidgahi
- Department of Biology, Faculty of Sciences, Mashhad Branch, Islamic Azad University, Mashhad, Iran
| | - Hamid Reza Rahimi
- Neurogenic Inflammation Research Center, Mashhad University of Medical Sciences, Mashhad, Iran
- Department of Modern Sciences & Technologies, School of Medicine, Mashhad University of Medical Sciences, Mashhad, Iran
| | - Mohammad Reza Saberi
- Medical Chemistry Department, School of Pharmacy, Mashhad University of Medical Sciences, Mashhad, Iran
| | - Zeinab Amiri Tehranizadeh
- Medical Chemistry Department, School of Pharmacy, Mashhad University of Medical Sciences, Mashhad, Iran
| | - Sima Beigoli
- Endoscopic and Minimally Invasive Surgery Research Center, Mashhad University of Medical Sciences, Mashhad, Iran
| | - Jamshidkhan Chamani
- Department of Biology, Faculty of Sciences, Mashhad Branch, Islamic Azad University, Mashhad, Iran
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24
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Ray A, Das S, Chattopadhyay N. Aggregation of Nile Red in Water: Prevention through Encapsulation in β-Cyclodextrin. ACS OMEGA 2019; 4:15-24. [PMID: 31459307 PMCID: PMC6649296 DOI: 10.1021/acsomega.8b02503] [Citation(s) in RCA: 43] [Impact Index Per Article: 8.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/25/2018] [Accepted: 11/15/2018] [Indexed: 05/28/2023]
Abstract
The present work, based on various spectroscopic investigations, vividly demonstrates the self-association of Nile red (NR) in aqueous medium. The rapid decrease in the absorbance as well as emission of NR in water bears the signature of the aggregation process. Appearance of a new blue-shifted absorption band in addition to the original one and a drastic decrease in the emission intensity imply that the aggregation is of H-type. Poor solubility of NR in water, hydrophobic interaction, and the planar structure of the dye are ascribed to favor the formation of the aggregate in the aqueous medium. Absorption-based kinetic studies reveal the aggregation process to be second order, thereby establishing the aggregate to be a dimer. Similar kinetic profiles of the absorbance of NR in the presence and absence of light confirm that the aggregation process is not photoassisted. The presence of an isosbestic point in the absorbance spectra and an isoemissive point in the time-resolved area normalized emission spectra bears the evidence of equilibrium between the dimeric and the monomeric species of NR in the ground state as well as in the photoexcited state. Encapsulation of the monomer of NR within the hydrophobic cavity of β-cyclodextrin is demonstrated to prevent the aggregation process.
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25
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Dávila–Rodríguez M, Barolli JP, de Oliveira KM, Colina–Vegas L, da Silva Miranda F, Castellano EE, Von Poelhsitz G, Batista AA. Carbonyl–heterobimetallic Ru(II)/Fe(II)–complexes containing polypyridyl ligands: Synthesis, characterization, cellular viability assays and interactions with biomolecules. Arch Biochem Biophys 2018; 660:156-167. [DOI: 10.1016/j.abb.2018.10.020] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/06/2018] [Revised: 10/25/2018] [Accepted: 10/30/2018] [Indexed: 12/18/2022]
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26
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Kale KB, Ottoor DP. Comprehensive analysis of the atenolol - DNA complex by viscometric, molecular docking and spectroscopic techniques. LUMINESCENCE 2018; 34:39-47. [DOI: 10.1002/bio.3574] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/07/2018] [Revised: 10/01/2018] [Accepted: 10/04/2018] [Indexed: 12/28/2022]
Affiliation(s)
- Kishor B. Kale
- Department of Chemistry; Savitribai Phule Pune University; Ganeshkhind Road Pune India
| | - Divya P. Ottoor
- Department of Chemistry; Savitribai Phule Pune University; Ganeshkhind Road Pune India
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27
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Jamali T, Kavoosi G, Safavi M, Ardestani SK. In-vitro evaluation of apoptotic effect of OEO and thymol in 2D and 3D cell cultures and the study of their interaction mode with DNA. Sci Rep 2018; 8:15787. [PMID: 30361692 PMCID: PMC6202332 DOI: 10.1038/s41598-018-34055-w] [Citation(s) in RCA: 51] [Impact Index Per Article: 8.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/11/2018] [Accepted: 09/10/2018] [Indexed: 12/22/2022] Open
Abstract
Oliveria decumbens is an Iranian endemic plant used extensively in traditional medicine. Recently, some studies have been performed on biological effects of Oliveria essential oil (OEO). However, to our knowledge, the anticancer activity of OEO has not been reported. Based on our GC/MS analysis, the basic ingredients of OEO are thymol, carvacrol, p-cymene and γ-terpinene. Therefore, we used OEO and its main component, thymol, to explore their effects on cell growth inhibition and anticancer activity. Despite having a limited effect on L929 normal cells, OEO/thymol induced cytotoxicity in MDA-MB231 breast cancer monolayers (2D) and to a lesser extent in MDA-MB231 spheroids (3D). Flow cytometry, caspase-3 activity assay in treated monolayers/spheroids and also fluorescence staining and DNA fragmentation in treated monolayers demonstrated apoptotic death mode. Indeed, OEO/thymol increased the Reactive Oxygen Species (ROS) level leading to mitochondrial membrane potential (MMP, ΔΨm) loss, caspase-3 activation and DNA damage caused S-phase cell cycle arrest. Furthermore, immunoblotting studies revealed the activation of intrinsic and maybe extrinsic apoptosis pathways by OEO/thymol. Additionally, in-vitro experiments, indicated that OEO/thymol interacts with DNA via minor grooves confirmed by docking method. Altogether, our reports underlined the potential of OEO to be considered as a new candidate for cancer therapy.
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Affiliation(s)
- Tahereh Jamali
- Institute of Biochemistry and Biophysics, University of Tehran, Tehran, Iran
| | | | - Maliheh Safavi
- Department of Biotechnology, Iranian Research Organization for Science and Technology, Tehran, Iran
| | - Susan K Ardestani
- Institute of Biochemistry and Biophysics, University of Tehran, Tehran, Iran.
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28
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Pawar S, Tandel R, Kunabevu R, Jaldappagari S. Spectroscopic and computational approaches to unravel the mode of binding between a isoflavone, biochanin-A and calf thymus DNA. J Biomol Struct Dyn 2018; 37:846-856. [DOI: 10.1080/07391102.2018.1442748] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023]
Affiliation(s)
- Suma Pawar
- Department of Chemistry, Karnatak University, Dharwad, 580 003, India
| | - Ranjita Tandel
- Department of Chemistry, Karnatak University, Dharwad, 580 003, India
| | - Ramesh Kunabevu
- Department of Chemistry, SJM College, Chitradurga, 577 501, India
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29
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Kundu P, Chattopadhyay N. Interaction of a bioactive pyrazole derivative with calf thymus DNA: Deciphering the mode of binding by multi-spectroscopic and molecular docking investigations. JOURNAL OF PHOTOCHEMISTRY AND PHOTOBIOLOGY B-BIOLOGY 2017; 173:485-492. [DOI: 10.1016/j.jphotobiol.2017.06.022] [Citation(s) in RCA: 29] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/10/2017] [Revised: 06/15/2017] [Accepted: 06/21/2017] [Indexed: 11/16/2022]
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30
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Spectroscopic, electrochemical and molecular docking study of the binding interaction of a small molecule 5H-naptho[2,1-f][1,2] oxathieaphine 2,2-dioxide with calf thymus DNA. Int J Biol Macromol 2017; 101:527-535. [DOI: 10.1016/j.ijbiomac.2017.03.053] [Citation(s) in RCA: 34] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/04/2017] [Revised: 03/09/2017] [Accepted: 03/10/2017] [Indexed: 11/24/2022]
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31
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Das S, Chattopadhyay N. Supramolecular Inclusion-Assisted Disruption of Probe-Solvent Network. ChemistrySelect 2017. [DOI: 10.1002/slct.201701401] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/31/2023]
Affiliation(s)
- Sinjan Das
- Department of Chemistry; Jadavpur University; Kolkata - 700032 India
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32
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Shokohi-Pour Z, Chiniforoshan H, Sabzalian MR, Esmaeili SA, Momtazi-Borojeni AA. Cobalt (II) complex with novel unsymmetrical tetradentate Schiff base (ON) ligand: in vitro cytotoxicity studies of complex, interaction with DNA/protein, molecular docking studies, and antibacterial activity. J Biomol Struct Dyn 2017; 36:532-549. [PMID: 28271957 DOI: 10.1080/07391102.2017.1287006] [Citation(s) in RCA: 26] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
Abstract
[C20H17N3O2] and cobalt (II) complex [Co(L2)(MeOH)2].ClO4, (L2 = 4-((E)-1-((2-(((E)-pyridin-2-ylmethylene) amino) phenyl) imino) ethyl) benzene-1, 3-diol) novel Schiff base has been synthesiszed and chracterized by Fourier transform infrared, UV-vis, 1H-NMR spectroscopy, and elemental analysis techniques. The interaction of Co(II) complex with DNA and BSA was investigated by electronic absorption spectroscopy, fluorescence spectroscopy, circular dichroism, and thermal denaturation studies. Our experiments indicate that this complex could strongly bind to CT-DNA via minor groove mechanism. In addition, fluorescence spectrometry of BSA with the complex showed that the fluorescence quenching mechanism of BSA was of static type. The complex exhibited significant in vitro cytotoxicity against three human cancer cell lines (JURKAT, SKOV3, and U87). The molecular docking experiment effectively proved the binding of complex to DNA and BSA. Finally, antibacterial assay over gram-positive and gram-negative pathogenic bacterial strains was studied.
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Affiliation(s)
- Zahra Shokohi-Pour
- a Department of Chemistry , Isfahan University of Technology , Isfahan 84156-83111 , Iran
| | - Hossein Chiniforoshan
- a Department of Chemistry , Isfahan University of Technology , Isfahan 84156-83111 , Iran
| | - Mohammad R Sabzalian
- b Department of Agronomy and Plant Breeding , College of Agriculture, Isfahan University of Technology , Isfahan 84156-83111 , Iran
| | - Seyed-Alireza Esmaeili
- c Student Research Committee, Department of Immunology and Allergy , Immunology Research Center, School of Medicine, Mashhad University of Medical Sciences , Mashhad , Iran
| | - Amir Abbas Momtazi-Borojeni
- d Student Research Committee, Department of Medical Biotechnology , Nanotechnology Research Center, School of Medicine, Mashhad University of Medical Sciences , Mashhad , Iran
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33
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Ismail MB, Booysen IN, Hosten E, Akerman MP. Synthesis, characterization and DNA interaction studies of tricarbonyl rhenium(I) compounds containing terpyridine Schiff base chelates. J Organomet Chem 2017. [DOI: 10.1016/j.jorganchem.2017.01.017] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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34
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Afzal M, Kundu P, Das S, Ghosh S, Chattopadhyay N. A promising strategy for improved solubilization of ionic drugs simply by electrostatic pushing. RSC Adv 2017. [DOI: 10.1039/c7ra08056e] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
Addition of soluble salts to the SDS-bound phenosafranin induces electrostatic pushing of the probe within the micellar interior from its initial location at the micelle–water interface.
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Affiliation(s)
- Mohd Afzal
- Department of Chemistry
- Jadavpur University
- Kolkata-700032
- India
| | - Pronab Kundu
- Department of Chemistry
- Jadavpur University
- Kolkata-700032
- India
| | - Sinjan Das
- Department of Chemistry
- Jadavpur University
- Kolkata-700032
- India
| | - Saptarshi Ghosh
- Department of Chemistry
- Jadavpur University
- Kolkata-700032
- India
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35
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Chandra F, Mallick S, Koner AL. Spectroscopic investigation of bio-mimetic solvolysis of 6-(N,N-dimethylamino)-2,3-naphthalic anhydride in confined nanocavities. Phys Chem Chem Phys 2017; 19:4337-4344. [DOI: 10.1039/c6cp08009j] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Enzymes are biological catalysts that can vastly accelerate the reaction rate of a substrate by accommodating it within the active site.
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Affiliation(s)
- Falguni Chandra
- Department of Chemistry
- Indian Institute of Science Education and Research Bhopal
- Bhopal-462066
- India
| | - Suman Mallick
- Department of Chemistry
- Indian Institute of Science Education and Research Bhopal
- Bhopal-462066
- India
| | - Apurba L. Koner
- Department of Chemistry
- Indian Institute of Science Education and Research Bhopal
- Bhopal-462066
- India
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36
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Afzal M, Ghosh S, Das S, Chattopadhyay N. Endogenous Activation-Induced Delivery of a Bioactive Photosensitizer from a Micellar Carrier to Natural DNA. J Phys Chem B 2016; 120:11492-11501. [DOI: 10.1021/acs.jpcb.6b08283] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
Affiliation(s)
- Mohd Afzal
- Department of Chemistry, Jadavpur University, Kolkata 700032, India
| | - Saptarshi Ghosh
- Department of Chemistry, Jadavpur University, Kolkata 700032, India
| | - Sinjan Das
- Department of Chemistry, Jadavpur University, Kolkata 700032, India
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37
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Filipović NR, Bjelogrlić S, Todorović TR, Blagojević VA, Muller CD, Marinković A, Vujčić M, Janović B, Malešević AS, Begović N, Senćanski M, Minić DM. Ni(ii) complex with bishydrazone ligand: synthesis, characterization, DNA binding studies and pro-apoptotic and pro-differentiation induction in human cancerous cell lines. RSC Adv 2016. [DOI: 10.1039/c6ra24604d] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023] Open
Abstract
A new Ni(ii) complex, [Ni(L)(H2O)] (1), with diethyl 3,3′-(2,2′-(1,1′-(pyridine-2,6-diyl)bis(ethan-1-yl-1-ylidene))bis(hydrazin-1-yl-2-ylidene))bis(3-oxopropanoate) ligand (H2L) was synthesized as a potential chemotherapeutic agent.
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Affiliation(s)
| | | | | | | | - Christian D. Muller
- Institut Pluridisciplinaire Hubert Curien
- UMR 7178 CNRS Université de Strasbourg
- 67401 Illkirch
- France
| | | | - Miroslava Vujčić
- Institute of Chemistry, Technology and Metallurgy
- University of Belgrade
- 11000 Belgrade
- Serbia
| | - Barbara Janović
- Institute of Chemistry, Technology and Metallurgy
- University of Belgrade
- 11000 Belgrade
- Serbia
| | | | - Nebojša Begović
- Institute of General and Physical Chemistry
- 11000 Belgrade
- Serbia
| | - Milan Senćanski
- Center for Multidisciplinary Research
- Institute of Nuclear Sciences ”Vinča”
- University of Belgrade
- 11000 Belgrade
- Serbia
| | - Dragica M. Minić
- Faculty of Physical Chemistry
- University of Belgrade
- 11000 Belgrade
- Serbia
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38
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Kundu P, Ghosh S, Das S, Chattopadhyay N. Cyclodextrin induced controlled delivery of a biological photosensitizer from a nanocarrier to DNA. Phys Chem Chem Phys 2016; 18:3685-93. [DOI: 10.1039/c5cp06174a] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023]
Abstract
Addition of β-cyclodextrin to the micelle bound phenosafranin in the presence of ctDNA leads to quantitative transfer of the fluorophore from the micelle to the DNA.
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Affiliation(s)
- Pronab Kundu
- Department of Chemistry
- Jadavpur University
- Kolkata-700032
- India
| | - Saptarshi Ghosh
- Department of Chemistry
- Jadavpur University
- Kolkata-700032
- India
| | - Sinjan Das
- Department of Chemistry
- Jadavpur University
- Kolkata-700032
- India
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39
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Ghosh S, Kundu P, Chattopadhyay N. DNA induced sequestration of a bioactive cationic fluorophore from the lipid environment: A spectroscopic investigation. JOURNAL OF PHOTOCHEMISTRY AND PHOTOBIOLOGY B-BIOLOGY 2016; 154:118-25. [DOI: 10.1016/j.jphotobiol.2015.11.001] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/06/2015] [Revised: 10/29/2015] [Accepted: 11/01/2015] [Indexed: 12/28/2022]
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40
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Karami K, Lighvan ZM, Barzani SA, Faal AY, Poshteh-Shirani M, Khayamian T, Eigner V, Dušek M. Design and synthesis of a novel trinuclear palladium(ii) complex containing an oxime chelate ligand: determining the interaction mechanism with the DNA groove and BSA site I by spectroscopic and molecular dynamics simulation approaches. NEW J CHEM 2015. [DOI: 10.1039/c5nj01280e] [Citation(s) in RCA: 61] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The trinuclear Pd(II) complex containing an oxime ligand showed significant interaction with both CT-DNA and BSA.
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Affiliation(s)
- Kazem Karami
- Department of Chemistry
- Isfahan University of Technology
- Isfahan
- Iran
| | | | | | - Ali Yeganeh Faal
- Department of Chemistry
- Faculty of Science
- Payam Noor University
- Iran
| | | | - Taghi Khayamian
- Department of Chemistry
- Isfahan University of Technology
- Isfahan
- Iran
| | | | - Michal Dušek
- Institute of Physics AS CR
- Prague 8
- Czech Republic
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41
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Ghosh S, Chattopadhyay N. Modification of the photophysics of 3-hydroxyflavone in aqueous solutions of imidazolium-based room temperature ionic liquids: a comparison between micelle-forming and non micelle-forming ionic liquids. RSC Adv 2015. [DOI: 10.1039/c5ra03833b] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
Fluorometric techniques have been exploited to study the photophysical behaviour of an ESIPT probe, 3HF, in two imidazolium-based room temperature ionic liquids, one micelle-forming and the other non micelle-forming.
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Affiliation(s)
- Saptarshi Ghosh
- Department of Chemistry
- Jadavpur University
- Kolkata – 700 032
- India
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42
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Tu B, Liu ZJ, Chen ZF, Ouyang Y, Hu YJ. Understanding the structure–activity relationship between quercetin and naringenin: in vitro. RSC Adv 2015. [DOI: 10.1039/c5ra22551e] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
The interactions of quercetin and naringenin with DNA have been studied at molecular level, which may throw light on their structure–activity relationships, helpful for the design of analogs flavonoids and their application in drug industries.
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Affiliation(s)
- Bao Tu
- Hubei Collaborative Innovation Center for Rare Metal Chemistry
- Hubei Key Laboratory of Pollutant Analysis & Reuse Technology
- Department of Chemistry
- Hubei Normal University
- Huangshi 435002
| | - Zhi-Juan Liu
- Hubei Collaborative Innovation Center for Rare Metal Chemistry
- Hubei Key Laboratory of Pollutant Analysis & Reuse Technology
- Department of Chemistry
- Hubei Normal University
- Huangshi 435002
| | - Zhi-Feng Chen
- Hubei Collaborative Innovation Center for Rare Metal Chemistry
- Hubei Key Laboratory of Pollutant Analysis & Reuse Technology
- Department of Chemistry
- Hubei Normal University
- Huangshi 435002
| | - Yu Ouyang
- Hubei Collaborative Innovation Center for Rare Metal Chemistry
- Hubei Key Laboratory of Pollutant Analysis & Reuse Technology
- Department of Chemistry
- Hubei Normal University
- Huangshi 435002
| | - Yan-Jun Hu
- Hubei Collaborative Innovation Center for Rare Metal Chemistry
- Hubei Key Laboratory of Pollutant Analysis & Reuse Technology
- Department of Chemistry
- Hubei Normal University
- Huangshi 435002
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43
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Kundu P, Ghosh S, Chattopadhyay N. Exploration of the binding interaction of a potential nervous system stimulant with calf-thymus DNA and dissociation of the drug–DNA complex by detergent sequestration. Phys Chem Chem Phys 2015; 17:17699-709. [DOI: 10.1039/c5cp02101d] [Citation(s) in RCA: 38] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The binding interaction of a potential nervous system stimulant with calf-thymus DNA has been divulged and dissociation of the drug–DNA complex has been achieved by the detergent sequestration method.
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Affiliation(s)
- Pronab Kundu
- Department of Chemistry
- Jadavpur University
- Kolkata – 700 032
- India
| | - Saptarshi Ghosh
- Department of Chemistry
- Jadavpur University
- Kolkata – 700 032
- India
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44
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Wang L, Tao M, Zhang G, Li S, Gong D. Partial intercalative binding of the food colorant erythrosine to herring sperm DNA. RSC Adv 2015. [DOI: 10.1039/c5ra19626d] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022] Open
Abstract
Erythrosine partially inserts into the G–C rich region of hsDNA and induces moderate conformational perturbation of the DNA.
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Affiliation(s)
- Langhong Wang
- State Key Laboratory of Food Science and Technology
- Nanchang University
- Nanchang 330047
- China
| | - Mo Tao
- State Key Laboratory of Food Science and Technology
- Nanchang University
- Nanchang 330047
- China
| | - Guowen Zhang
- State Key Laboratory of Food Science and Technology
- Nanchang University
- Nanchang 330047
- China
| | - Song Li
- State Key Laboratory of Food Science and Technology
- Nanchang University
- Nanchang 330047
- China
| | - Deming Gong
- School of Biological Sciences
- The University of Auckland
- Auckland 1142
- New Zealand
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