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Artigas A, Carissan Y, Hagebaum-Reignier D, Bock H, Durola F, Coquerel Y. Aromaticity in Semi-Condensed Figure-Eight Molecules. Chemistry 2024; 30:e202401016. [PMID: 38642001 DOI: 10.1002/chem.202401016] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/12/2024] [Revised: 04/08/2024] [Accepted: 04/19/2024] [Indexed: 04/22/2024]
Abstract
Electron delocalization and aromaticity was comparatively evaluated in recently synthesized figure-eight molecules made of two condensed U-shaped polycyclic aromatic hydrocarbon moieties connected either by two single bonds or by two para-phenylene groups. The selected examples include molecules that incorporate eight-membered and sixteen-membered rings, as well as a doubly [5]helicene-bridged (1,4)cyclophane. We probe whether some electron delocalization could occur through the stereogenic single bonds in these molecules: Is aromaticity purely (semi-)local, or possibly also global in these molecules? It was concluded that the situation can go from a purely (semi-)local character when the dihedral angle at the connecting single bonds is large, such as in biphenyl, to a predominantly (semi-)local character with a minor global contribution when the dihedral angle is small, such as in the para-phenylene connectors of the [5] helicene-bridged cyclophane.
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Affiliation(s)
- Albert Artigas
- Facultat de Ciències, Universitat de Girona, Campus Montilivi, Carrer de Maria Aurèlia Capmany i Farnès 69, 17003, Girona, Catalunya, Spain
| | - Yannick Carissan
- Aix Marseille Univ, CNRS, Centrale Méditerranée, iSm2, Marseille, France
| | | | - Harald Bock
- Centre de Recherche Paul Pascal, CNRS, 115 av. Schweitzer, 33600, Pessac, France
| | - Fabien Durola
- Centre de Recherche Paul Pascal, CNRS, 115 av. Schweitzer, 33600, Pessac, France
| | - Yoann Coquerel
- Aix Marseille Univ, CNRS, Centrale Méditerranée, iSm2, Marseille, France
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2
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Rončević I, Leslie FJ, Rossmannek M, Tavernelli I, Gross L, Anderson HL. Aromaticity Reversal Induced by Vibrations in Cyclo[16]carbon. J Am Chem Soc 2023; 145:26962-26972. [PMID: 38039504 PMCID: PMC10722511 DOI: 10.1021/jacs.3c10207] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/16/2023] [Revised: 10/29/2023] [Accepted: 10/31/2023] [Indexed: 12/03/2023]
Abstract
Aromaticity is typically regarded as an intrinsic property of a molecule, correlated with electron delocalization, stability, and other properties. Small variations in the molecular geometry usually result in small changes in aromaticity, in line with Hammond's postulate. For example, introducing bond-length alternation in benzene and square cyclobutadiene by modulating the geometry along the Kekulé vibration gradually decreases the magnitude of their ring currents, making them less aromatic and less antiaromatic, respectively. A sign change in the ring current, corresponding to a reversal of aromaticity, typically requires a gross perturbation such as electronic excitation, addition or removal of two electrons, or a dramatic change in the molecular geometry. Here, we use multireference calculations to show how movement along the Kekulé vibration, which controls bond-length alternation, induces a sudden reversal in the ring current of cyclo[16]carbon, C16. This reversal occurs when the two orthogonal π systems of C16 sustain opposing currents. These results are rationalized by a Hückel model which includes bond-length alternation, and which is combined with a minimal model accounting for orbital contributions to the ring current. Finally, we successfully describe the electronic structure of C16 with a "divide-and-conquer" approach suitable for execution on a quantum computer.
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Affiliation(s)
- Igor Rončević
- Department
of Chemistry, Oxford University, Chemistry
Research Laboratory, Oxford OX1 3TA, United
Kingdom
| | - Freddie J. Leslie
- Department
of Chemistry, Oxford University, Chemistry
Research Laboratory, Oxford OX1 3TA, United
Kingdom
| | - Max Rossmannek
- IBM
Research Europe − Zurich, Säumerstrasse 4, Rüschlikon 8803, Switzerland
| | - Ivano Tavernelli
- IBM
Research Europe − Zurich, Säumerstrasse 4, Rüschlikon 8803, Switzerland
| | - Leo Gross
- IBM
Research Europe − Zurich, Säumerstrasse 4, Rüschlikon 8803, Switzerland
| | - Harry L. Anderson
- Department
of Chemistry, Oxford University, Chemistry
Research Laboratory, Oxford OX1 3TA, United
Kingdom
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3
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Mahmood A, Dimitrova M, Sundholm D. Current-Density Calculations on Zn-Porphyrin 40 Nanorings. J Phys Chem A 2023; 127:7452-7459. [PMID: 37665662 PMCID: PMC10510378 DOI: 10.1021/acs.jpca.3c03564] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/26/2023] [Revised: 08/04/2023] [Indexed: 09/06/2023]
Abstract
Two porphyrinoid nanorings have been studied computationally. They were built by linking 40 Zn-porphyrin units with butadiyne bridges. The molecular structures belonging to the D40h point group were fully optimized with the Turbomole program at the density functional theory (DFT) level using the B3LYP functional and the def2-SVP basis sets. The aromatic character was studied at the DFT level by calculating the magnetically induced current-density (MICD) susceptibility using the GIMIC program. The neutral molecules are globally non-aromatic with aromatic Zn-porphyrin units. Charged nanorings could not be studied because almost degenerate frontier orbitals led to vanishing optical gaps for the cations. Since DFT calculations of the MICD are computationally expensive, we also calculated the MICD using three pseudo-π models. Appropriate pseudo-π models were constructed by removing the outer hydrogen atoms and replacing all carbon and nitrogen atoms with hydrogen atoms. The central Zn atom was either replaced with a beryllium atom or with two inner hydrogen atoms. Calculations with the computationally inexpensive pseudo-π models yielded qualitatively the same magnetic response as obtained in the all-electron calculations.
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Affiliation(s)
- Atif Mahmood
- Department of Chemistry, University
of Helsinki, P.O. Box 55, A. I. Virtasen Aukio 1, FIN-00014 Helsinki, Finland
| | - Maria Dimitrova
- Department of Chemistry, University
of Helsinki, P.O. Box 55, A. I. Virtasen Aukio 1, FIN-00014 Helsinki, Finland
| | - Dage Sundholm
- Department of Chemistry, University
of Helsinki, P.O. Box 55, A. I. Virtasen Aukio 1, FIN-00014 Helsinki, Finland
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4
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Merino G, Solà M, Fernández I, Foroutan-Nejad C, Lazzeretti P, Frenking G, Anderson HL, Sundholm D, Cossío FP, Petrukhina MA, Wu J, Wu JI, Restrepo A. Aromaticity: Quo Vadis. Chem Sci 2023; 14:5569-5576. [PMID: 37265727 PMCID: PMC10231312 DOI: 10.1039/d2sc04998h] [Citation(s) in RCA: 43] [Impact Index Per Article: 43.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/07/2022] [Accepted: 02/22/2023] [Indexed: 07/25/2023] Open
Abstract
Aromaticity is one of the most deeply rooted concepts in chemistry. But why, if two-thirds of existing compounds can be classified as aromatic, is there no consensus on what aromaticity is? σ-, π-, δ-, spherical, Möbius, or all-metal aromaticity… why are so many attributes needed to specify a property? Is aromaticity a dubious concept? This perspective aims to reflect where the aromaticity community is and where it is going.
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Affiliation(s)
- Gabriel Merino
- Departamento de Física Aplicada, Centro de Investigación y de Estudios Avanzados Unidad Mérida, km 6 Antigua Carretera a Progreso, Apdo. Postal 73, Cordemex 97310 Mérida Yucatán Mexico
| | - Miquel Solà
- Institut de Química Computacional i Catàlisi and Department de Química, Universitat de Girona C/M. Aurèlia Capmany, 69 Girona 17003 Catalonia Spain
| | - Israel Fernández
- Departamento de Química Orgánica and Centro de Innovación en Química Avanzada (ORFEO-CINQA), Facultad de Ciencias Químicas, Universidad Complutense de Madrid 28040 Madrid Spain
| | - Cina Foroutan-Nejad
- Institute of Organic Chemistry, Polish Academy of Sciences Kasprzaka 44/52 01-224 Warsaw Poland
| | - Paolo Lazzeretti
- Dipartimento di Chimica e Biologia "A. Zambelli", Università degli Studi di Salerno via Giovanni Paolo II 132, Fisciano 84084 SA Italy
| | - Gernot Frenking
- Fachbereich Chemie, Philipps-Universität Marburg Hans-Meerwein-Strasse 4, D-35043 Marburg Germany
| | | | - Dage Sundholm
- Department of Chemistry, Faculty of Science, University of Helsinki P.O. Box 55, A. I. Virtasen aukio 1 FIN-00014 Helsinki Finland
| | - Fernando P Cossío
- Departamento de Química Orgánica I, Instituto de Innovaciónen Química Avanzada (ORFEO-CINQA), University of the Basque Country (UPV/EHU) Paseo Manuel Lardizabal 3 20018 Donostia/San Sebastián Spain
| | - Marina A Petrukhina
- Department of Chemistry, University at Albany, State University of New York Albany New York 12222 USA
| | - Jishan Wu
- Department of Chemistry, National University of Singapore 3 Science Drive 3 Singapore 117543 Singapore
| | - Judy I Wu
- Department of Chemistry, University of Houston Houston Texas 77204 USA
| | - Albeiro Restrepo
- Instituto de Química, Universidad de Antioquia Calle 70 No. 52-21 050010 Medellín Colombia
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5
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Orozco-Ic M, Sundholm D. Magnetic response properties of carbon nano-onions. Phys Chem Chem Phys 2022; 24:22487-22496. [PMID: 36106772 DOI: 10.1039/d2cp02718f] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The magnetic response of a number of double- and triple-layer carbon nano-onions (CNOs) is analyzed by calculating the magnetically induced current density and the induced magnetic field using the pseudo-π model. Qualitatively the same magnetic response was obtained in calculations at the all-electron level. The calculations show that the CNOs exhibit strong net diatropic (paratropic) ring currents when the external magnetic field points perpendicularly to one of the six-membered (five-membered) rings. They are deshielded inside and shielded outside the CNO; the latter dominates for larger CNOs. The magnetic response originates from a combination of spherical paratropic current densities on the inside of each carbon layer and diatropic current densities on the outside of them. The quantitative differences in the aromaticity of the CNOs as compared to single fullerenes are discussed in terms of ring-current strengths. The magnetic response of some of the CNOs is approximately the sum of the magnetic response of the individual layers, whereas deviations are significant for CNOs containing C80. For the largest CNOs, the deviation from the sum of the fullerene contributions is larger, especially when the external magnetic field is perpendicular to a six-membered ring.
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Affiliation(s)
- Mesías Orozco-Ic
- Department of Chemistry, Faculty of Science, University of Helsinki, P.O. Box 55, A. I. Virtasen aukio 1, FIN-00014 Helsinki, Finland.
| | - Dage Sundholm
- Department of Chemistry, Faculty of Science, University of Helsinki, P.O. Box 55, A. I. Virtasen aukio 1, FIN-00014 Helsinki, Finland.
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6
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Orozco-Ic M, Charistos ND, Muñoz-Castro A, Islas R, Sundholm D, Merino G. Core-electron contributions to the molecular magnetic response. Phys Chem Chem Phys 2022; 24:12158-12166. [PMID: 35543541 DOI: 10.1039/d1cp05713h] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Orbital contributions to the magnetic response depend on the method used to compute them. Here, we show that dissecting nuclear magnetic shielding tensors using natural localized molecular orbitals (NLMOs) leads to anomalous core contributions. The arbitrariness of the assignment might significantly affect the interpretation of the magnetic response of nonplanar molecules such as C60 or [14]helicene and the assessment of their aromatic character. We solve this problem by computing the core- and σ-components of the induced magnetic field (and NICS) and the magnetically induced current density by removing the valence electrons (RVE). We estimate the core contributions to the magnetic response by performing calculations on the corresponding highly charged molecules, such as C6H630+ for benzene, using gauge-including atomic orbitals and canonical molecular orbitals (CMOs). The orbital contributions to nuclear magnetic shielding tensors are usually estimated by employing a natural chemical shielding (NCS) analysis in NLMO or CMO bases. The RVE approach shows that the core contribution to the magnetic response is small and localized at the nuclei, contrary to what NCS calculations suggest. This may lead to a completely incorrect interpretation of the magnetic σ-orbital response of nonplanar structures, which may play a major role in the overall magnetic shielding of the system. The RVE approach is thus a simple and inexpensive way to determine the magnetic response of the core- and σ-electrons.
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Affiliation(s)
- Mesías Orozco-Ic
- Department of Chemistry, Faculty of Science, University of Helsinki, P.O. Box 55, A. I. Virtasen aukio 1, FIN-00014 Helsinki, Finland.
| | - Nickolas D Charistos
- Aristotle University of Thessaloniki, Department of Chemistry, Laboratory of Quantum and Computational Chemistry, Thessaloniki, 54 124, Greece
| | - Alvaro Muñoz-Castro
- Grupo de Química Inorgánica y Materiales Moleculares, Facultad de Ingeniería, Universidad Autonoma de Chile, El Llano Subercaseaux 2801, Santiago, Chile
| | - Rafael Islas
- Departamento de Ciencias Químicas, Facultad de Ciencias Exactas, Universidad Andres Bello, Av. República 275, 8370146, Santiago, Chile
| | - Dage Sundholm
- Department of Chemistry, Faculty of Science, University of Helsinki, P.O. Box 55, A. I. Virtasen aukio 1, FIN-00014 Helsinki, Finland.
| | - Gabriel Merino
- Departamento de Física Aplicada, Centro de Investigación y de Estudios Avanzados, Unidad Mérida. Km 6 Antigua Carretera a Progreso. Apdo. Postal 73, Cordemex, 97310, Mérida, Yuc., Mexico.
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7
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Arias-Olivares D, Páez-Hernández D. The spin–orbit effects on platinabenzene: a ring current and electron delocalization approach. NEW J CHEM 2022. [DOI: 10.1039/d2nj03317h] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The aromaticity of platinabenzene was studied using the electronic structure and magnetic descriptors with relativistic corrections. It presents aromatic character following the Hückel's rule, negative NICS values, and diatropic current densities.
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8
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Orozco-Ic M, Dimitrova M, Barroso J, Sundholm D, Merino G. Magnetically Induced Ring-Current Strengths of Planar and Nonplanar Molecules: New Insights from the Pseudo-π Model. J Phys Chem A 2021; 125:5753-5764. [PMID: 34161099 DOI: 10.1021/acs.jpca.1c03555] [Citation(s) in RCA: 16] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
The pseudo-π model yields current densities and induced magnetic fields that mimic the π-component, allowing investigations of large molecular structures, whether they are planar or not, at a low computational cost but with high accuracy. Herein the π-contribution to the magnetically induced current densities and induced magnetic fields of large planar molecules and nonplanar molecules (such as [10]cyclophenacene and chiral toroidal nanotubes C2016 and C2196) were computed using the pseudo-π model with the gauge-including magnetically induced currents method. Additionally, we provide a way to determine the π-component of the ring-current strengths, which can be used for assessing the aromatic character of large carbon molecules.
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Affiliation(s)
- Mesías Orozco-Ic
- Departamento de Física Aplicada, Centro de Investigación y de Estudios Avanzados, Unidad Mérida. Km 6 Antigua Carretera a Progreso. Apdo. Postal 73, Cordemex, 97310, Mérida, Yucatan, México
| | - Maria Dimitrova
- Department of Chemistry, Faculty of Science, University of Helsinki, P.O. Box 55, A. I. Virtasen aukio 1, FIN-00014 Helsinki, Finland
| | - Jorge Barroso
- Departamento de Física Aplicada, Centro de Investigación y de Estudios Avanzados, Unidad Mérida. Km 6 Antigua Carretera a Progreso. Apdo. Postal 73, Cordemex, 97310, Mérida, Yucatan, México
| | - Dage Sundholm
- Department of Chemistry, Faculty of Science, University of Helsinki, P.O. Box 55, A. I. Virtasen aukio 1, FIN-00014 Helsinki, Finland
| | - Gabriel Merino
- Departamento de Física Aplicada, Centro de Investigación y de Estudios Avanzados, Unidad Mérida. Km 6 Antigua Carretera a Progreso. Apdo. Postal 73, Cordemex, 97310, Mérida, Yucatan, México
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9
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Monaco G, Summa FF, Zanasi R. Program Package for the Calculation of Origin-Independent Electron Current Density and Derived Magnetic Properties in Molecular Systems. J Chem Inf Model 2020; 61:270-283. [PMID: 33347314 DOI: 10.1021/acs.jcim.0c01136] [Citation(s) in RCA: 30] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
We present SYSMOIC, a program package for the calculation of the origin-independent current density induced at first order by an external magnetic field in planar and nonplanar molecular systems. Origin independence is obtained adopting the continuous transformation of the origin of the current density method, implemented at both density functional theory (DFT) and Hartree-Fock (HF) levels. Expansion coefficients for perturbed and unperturbed molecular orbitals, over basis sets containing up to m-type Gaussian functions, can be calculated by the package itself or obtained from a Gaussian calculation. A number of different functionalities presented so far in the literature that are connected to the induced current, such as current density maps for any orientation of the inducing magnetic field, net bond current strengths, stagnation graphs, magnetic shielding densities, vorticities, and anisotropies, are now made available all together in a single multiplatform package installation.
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Affiliation(s)
- Guglielmo Monaco
- Dipartimento di Chimica e Biologia "A. Zambelli", Università degli Studi di Salerno, via Giovanni Paolo II 132, Fisciano 84084 SA, Italy
| | - Francesco F Summa
- Dipartimento di Chimica e Biologia "A. Zambelli", Università degli Studi di Salerno, via Giovanni Paolo II 132, Fisciano 84084 SA, Italy
| | - Riccardo Zanasi
- Dipartimento di Chimica e Biologia "A. Zambelli", Università degli Studi di Salerno, via Giovanni Paolo II 132, Fisciano 84084 SA, Italy
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10
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Heteroatom effects on aromaticity of five-membered rings in acenaphthylene analogs. J Mol Model 2020; 26:275. [PMID: 32959185 DOI: 10.1007/s00894-020-04543-w] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/11/2020] [Accepted: 09/13/2020] [Indexed: 10/23/2022]
Abstract
The pattern of cyclic conjugation was thoroughly studied in the series of N- and P-acenaphthylene derivatives using several different aromaticity indices: the energy effect (ef), multicenter delocalization index (MCI), harmonic oscillator model of aromaticity (HOMA) index, and nucleus independent chemical shifts (NICS). The Kekulé-structure-based reasoning predicts that there would be no cyclic conjugation in the "empty" five-membered heteroatom-containing rings in the studied molecules. It was found that according to the ef, MCI, and HOMA values, the extent of cyclic conjugation in the pentagonal rings is strongly influenced by the number and mutual arrangement of the hexagonal rings. In addition, it was revealed that in some of the examined molecules, the intensity of cyclic conjugation in the "empty" pentagons is even stronger than that of some hexagonal rings within the same molecule. The obtained results refute what one would expect based on "chemical intuition," which is usually strongly rooted to the Kekulé structures.Graphical abstract.
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11
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Orozco‐Ic M, Barroso J, Islas R, Merino G. Delocalization in Substituted Benzene Dications: A Magnetic Point of View. ChemistryOpen 2020; 9:657-661. [PMID: 32499992 PMCID: PMC7266496 DOI: 10.1002/open.202000105] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/15/2020] [Revised: 04/21/2020] [Indexed: 11/24/2022] Open
Abstract
In this work, the induced magnetic field is analyzed for a series of substituted benzenes dications with formula C6R62+ (R=I, At, SeH, SeCH3, TeH, TeCH3), presumably exhibiting concentric aromaticity. Previous studies concluded that in the carbon skeleton, just π-electrons are delocalized. However, our results support that both the σ- and π-electrons are delocalized in the carbon skeleton, combined with a σ-delocalization in the external ring. The role of the relativistic effects in these dications is discussed in detail.
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Affiliation(s)
- Mesías Orozco‐Ic
- Departamento de Física AplicadaCentro de Investigación y de Estudios AvanzadosUnidad Mérida. Km 6 Antigua Carretera a Progreso. Apdo. Postal 73, Cordemex97310Mérida, Yuc.México
| | - Jorge Barroso
- Departamento de Física AplicadaCentro de Investigación y de Estudios AvanzadosUnidad Mérida. Km 6 Antigua Carretera a Progreso. Apdo. Postal 73, Cordemex97310Mérida, Yuc.México
| | - Rafael Islas
- Departamento de Ciencias Químicas Facultad de Ciencias ExactasUniversidad Andres BelloAv. República 2758320000SantiagoChile
| | - Gabriel Merino
- Departamento de Física AplicadaCentro de Investigación y de Estudios AvanzadosUnidad Mérida. Km 6 Antigua Carretera a Progreso. Apdo. Postal 73, Cordemex97310Mérida, Yuc.México
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12
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Orozco‐Ic M, Barroso J, Charistos ND, Muñoz‐Castro A, Merino G. Consequences of Curvature on Induced Magnetic Field: The Case of Helicenes. Chemistry 2019; 26:326-330. [DOI: 10.1002/chem.201904390] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/24/2019] [Indexed: 11/11/2022]
Affiliation(s)
- Mesías Orozco‐Ic
- Departamento de Física Aplicada Centro de Investigación y, de Estudios Avanzados, Unidad Mérida Mérida Yucatán México
| | - Jorge Barroso
- Departamento de Física Aplicada Centro de Investigación y, de Estudios Avanzados, Unidad Mérida Mérida Yucatán México
| | - Nickolas D. Charistos
- Department of Chemistry, Laboratory of Quantum and Computational Chemistry Aristotle University of Thessaloniki Thessaloniki 54 124 Greece
| | - Alvaro Muñoz‐Castro
- Laboratorio de Química Inorgánica y Materiales Moleculares Facultad de Ingeniería Universidad Autónoma de Chile Santiago Chile
| | - Gabriel Merino
- Departamento de Física Aplicada Centro de Investigación y, de Estudios Avanzados, Unidad Mérida Mérida Yucatán México
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13
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Liu N, You XR, Zhai HJ. Chemical Bonding in Transition Metal Nitride Os 3N 3 + Cluster: 6π Inorganic Benzene and δ 2δ* 1δ* 1 Aromaticity. ACS OMEGA 2018; 3:17083-17091. [PMID: 31458328 PMCID: PMC6643571 DOI: 10.1021/acsomega.8b02709] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/08/2018] [Accepted: 11/29/2018] [Indexed: 06/10/2023]
Abstract
Inorganic benzene-like clusters with a planar hexagonal ring are of interest in chemistry, as are new types of aromaticity, multifold aromaticity, and in particular δ aromaticity beyond carbon-based organic systems. Here we report on a computational study of chemical bonding in a binary Os3N3 + D 3h (7A2″) cluster. This transition metal nitride cluster assumes a perfectly planar, heteroatomic, hexagonal geometry. An array of quantum chemistry tools is exploited to elucidate the electronic, structural, and bonding properties of D 3h Os3N3 + cluster, which include canonical molecular orbitals, adaptive natural density partitioning, natural bond orbital analysis, orbital composition calculations, and nucleus-independent chemical shifts. The computational data collectively support the bonding picture of 2-fold π/δ aromaticity: 6π electrons delocalized over all Os/N centers versus an Os-based 4δ framework in the unique δ2δ*1δ*1 configuration. The π sextet renders this heteroatomic cluster an inorganic analog of benzene. Transition metal-based inorganic benzenes are unknown in the literature, to our knowledge. The triplet 4δ electron-counting is a rare case of d-orbital aromaticity and δ-aromaticity, following the reversed 4n Hückel rule for aromaticity in a triplet system. This bonding picture is concrete, differing fundamentally from a recent study on the relevant system.
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14
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Solà M. Connecting and combining rules of aromaticity. Towards a unified theory of aromaticity. WILEY INTERDISCIPLINARY REVIEWS-COMPUTATIONAL MOLECULAR SCIENCE 2018. [DOI: 10.1002/wcms.1404] [Citation(s) in RCA: 20] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]
Affiliation(s)
- Miquel Solà
- Institute of Computational Chemistry and Catalysis and Chemistry Department Universitat de Girona Girona Spain
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15
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Xie Q, Sun T, Orozco‐Ic M, Barroso J, Zhao Y, Merino G, Zhu J. Probing Hyperconjugative Aromaticity of Monosubstituted Cyclopentadienes. ASIAN J ORG CHEM 2018. [DOI: 10.1002/ajoc.201800680] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Affiliation(s)
- Qiong Xie
- State Key Laboratory of Physical Chemistry of Solid Surfaces and Collaborative Innovation Center of Chemistry for Energy Materials (iChEM), and College of Chemistry and Chemical EngineeringXiamen University Xiamen 361005 P. R. China
| | - Tingting Sun
- State Key Laboratory of Physical Chemistry of Solid Surfaces and Collaborative Innovation Center of Chemistry for Energy Materials (iChEM), and College of Chemistry and Chemical EngineeringXiamen University Xiamen 361005 P. R. China
| | - Mesías Orozco‐Ic
- Departamento de FísicaAplicada, Centro de Investigación y de EstudiosAvanzadosUnidad Mérida, Km. 6 Antigua Carretera a Progreso, A.P. 73, Cordemex Mérida 97310 Mexico
| | - Jorge Barroso
- Departamento de FísicaAplicada, Centro de Investigación y de EstudiosAvanzadosUnidad Mérida, Km. 6 Antigua Carretera a Progreso, A.P. 73, Cordemex Mérida 97310 Mexico
| | - Yu Zhao
- State Key Laboratory of Physical Chemistry of Solid Surfaces and Collaborative Innovation Center of Chemistry for Energy Materials (iChEM), and College of Chemistry and Chemical EngineeringXiamen University Xiamen 361005 P. R. China
| | - Gabriel Merino
- Departamento de FísicaAplicada, Centro de Investigación y de EstudiosAvanzadosUnidad Mérida, Km. 6 Antigua Carretera a Progreso, A.P. 73, Cordemex Mérida 97310 Mexico
| | - Jun Zhu
- State Key Laboratory of Physical Chemistry of Solid Surfaces and Collaborative Innovation Center of Chemistry for Energy Materials (iChEM), and College of Chemistry and Chemical EngineeringXiamen University Xiamen 361005 P. R. China
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Baranac-Stojanović M. Can Variations of 1
H NMR Chemical Shifts in Benzene Substituted with an Electron-Accepting (NO 2
)/Donating (NH 2
) Group be Explained in Terms of Resonance Effects of Substituents? Chem Asian J 2018; 13:877-881. [DOI: 10.1002/asia.201800137] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/24/2018] [Revised: 02/19/2018] [Indexed: 11/08/2022]
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19
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Deng Y, Yu D, Cao X, Liu L, Rong C, Lu T, Liu S. Structure, aromaticity and reactivity of corannulene and its analogues: a conceptual density functional theory and density functional reactivity theory study. Mol Phys 2017. [DOI: 10.1080/00268976.2017.1403657] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
Affiliation(s)
- Youer Deng
- Key Laboratory of Chemical Biology and Traditional Chinese Medicine Research (Ministry of Education of China), College of Chemistry and Chemical Engineering, Hunan Normal University, Changsha, P.R. China
| | - Donghai Yu
- Key Laboratory of Chemical Biology and Traditional Chinese Medicine Research (Ministry of Education of China), College of Chemistry and Chemical Engineering, Hunan Normal University, Changsha, P.R. China
| | - Xiaofang Cao
- Key Laboratory of Chemical Biology and Traditional Chinese Medicine Research (Ministry of Education of China), College of Chemistry and Chemical Engineering, Hunan Normal University, Changsha, P.R. China
| | - Lianghong Liu
- Department of Pharmacy, Hunan University of Medicine, Huaihua, P.R. China
| | - Chunying Rong
- Key Laboratory of Chemical Biology and Traditional Chinese Medicine Research (Ministry of Education of China), College of Chemistry and Chemical Engineering, Hunan Normal University, Changsha, P.R. China
| | - Tian Lu
- Beijing Kein Research Center for Natural Sciences, Beijing, P.R. China
| | - Shubin Liu
- Research Computing Center, University of North Carolina, Chapel Hill, NC, USA
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D2BIA-flexible, not (explicitly) arbitrary and reference/structurally invariant-a very effective and improved version of the D3BIA aromaticity index. J Mol Model 2017; 23:253. [PMID: 28785890 DOI: 10.1007/s00894-017-3433-6] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/23/2017] [Accepted: 07/26/2017] [Indexed: 10/19/2022]
Abstract
Although there are a multitude of aromaticity indexes, only a few have a widespread usage. All famous aromaticity indexes are limited: HOMA and FLU are reference-dependent; ELF is π-bond-dependent; PDI is structurally dependent and NICS is ring size dependent. These limitations stimulate the continuous search for better (i.e., having no dependency), more flexible (i.e., applied to any aromatic system) and more effective (i.e., with excellent correlations with other indexes) aromaticity indexes. The D3BIA was our first topological aromaticity index. It is flexible, reference-independent and effective for planar and caged aromatic molecules. However, one of its terms, the degree of degeneracy (δ), is arbitrary and difficult to carry out for new users. Thus, in this work, we show that D2BIA-an improved version of D3BIA-is a good candidate to be used widely, since it retains the strong points of D3BIA while avoiding its weak point. In particular cases where all studied systems have δ = 1 (e.g., for acenes), then D2BIA equals D3BIA. For our recent study with acenes, D3BIA (and, as a consequence, D2BIA) has (have) an excellent correlation with FLU according to the MP3 method. In this work, by using DFT calculations for a series involving several six-membered and five-membered heteroaromatic rings, only D2BIA and NICS have very good correlation. All other well known aromaticity indexes used in this work (FLU, HOMA and ELF) gave poor correlations. As to homoaromatic systems, only D2BIA vs NICS and D2BIA vs FLU plots have excellent correlations. HOMA has the worst results in this series. Thus, D2BIA proved to be flexible and effective for the analysis of heteroaromatic rings of different sizes and for caged homoaromatic systems. Moreover, D2BIA has better correlations than D3BIA for planar aromatic systems, and same correlations for caged-homoaromatic systems. Graphical abstract D2BIA-an effective and improved version of the D3BIA aromaticity index.
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21
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Kumar A, Duran M, Solà M. Is coronene better described by Clar's aromatic π-sextet model or by the AdNDP representation? J Comput Chem 2017; 38:1606-1611. [DOI: 10.1002/jcc.24801] [Citation(s) in RCA: 23] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/09/2017] [Revised: 03/15/2017] [Accepted: 03/16/2017] [Indexed: 01/19/2023]
Affiliation(s)
- Anand Kumar
- Department of Chemistry; Indian Institute of Science Education and Research; Pune, Dr. Homi Bhabha Road Pune Maharashtra 411008 India
- Institut de Química Computacional i Catàlisi (IQCC), Department de Química; Universitat de Girona; c/Maria Aurèlia Capmany 6 Girona Catalonia 17003 Spain
| | - Miquel Duran
- Institut de Química Computacional i Catàlisi (IQCC), Department de Química; Universitat de Girona; c/Maria Aurèlia Capmany 6 Girona Catalonia 17003 Spain
| | - Miquel Solà
- Institut de Química Computacional i Catàlisi (IQCC), Department de Química; Universitat de Girona; c/Maria Aurèlia Capmany 6 Girona Catalonia 17003 Spain
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Yu D, Rong C, Lu T, Chattaraj PK, De Proft F, Liu S. Aromaticity and antiaromaticity of substituted fulvene derivatives: perspectives from the information-theoretic approach in density functional reactivity theory. Phys Chem Chem Phys 2017; 19:18635-18645. [DOI: 10.1039/c7cp03544f] [Citation(s) in RCA: 29] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Strong correlations among aromaticity descriptors and information-theoretic quantities are unveiled, providing novel insights about aromaticity and antiaromaticity from different perspectives.
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Affiliation(s)
- Donghai Yu
- Key Laboratory of Chemical Biology and Traditional Chinese Medicine Research (Ministry of Education of China)
- College of Chemistry and Chemical Engineering
- Hunan Normal University
- Changsha
- P. R. China
| | - Chunying Rong
- Key Laboratory of Chemical Biology and Traditional Chinese Medicine Research (Ministry of Education of China)
- College of Chemistry and Chemical Engineering
- Hunan Normal University
- Changsha
- P. R. China
| | - Tian Lu
- Beijing Kein Research Center for Natural Sciences
- Beijing 100022
- P. R. China
| | - Pratim K. Chattaraj
- Department of Chemistry and Center for Theoretical Studies
- Indian Institute of Technology
- Kharagpur 721302
- India
| | - Frank De Proft
- Research Group of General Chemistry (ALGC)
- Vrije Universiteit Brussel (VUB)
- 1050 Brussels
- Belgium
| | - Shubin Liu
- Key Laboratory of Chemical Biology and Traditional Chinese Medicine Research (Ministry of Education of China)
- College of Chemistry and Chemical Engineering
- Hunan Normal University
- Changsha
- P. R. China
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23
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Popov IA, Pan FX, You XR, Li LJ, Matito E, Liu C, Zhai HJ, Sun ZM, Boldyrev AI. Peculiar All-Metal σ-Aromaticity of the [Au2Sb16]4−Anion in the Solid State. Angew Chem Int Ed Engl 2016; 55:15344-15346. [DOI: 10.1002/anie.201609497] [Citation(s) in RCA: 39] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/27/2016] [Indexed: 11/11/2022]
Affiliation(s)
- Ivan A. Popov
- State Key Laboratory of Rare Earth Resource Utilization, Changchun Institute of Applied Chemistry; Changchun Jilin 130022 China
- Department of Chemistry and Biochemistry; Utah State University; 0300 Old Main Hill Logan UT 84322-0300 USA
| | - Fu-Xing Pan
- State Key Laboratory of Rare Earth Resource Utilization, Changchun Institute of Applied Chemistry; Changchun Jilin 130022 China
| | - Xue-Rui You
- Shanxi University; Institute of Molecular Science; Taiyuan China
| | - Lei-Jiao Li
- State Key Laboratory of Rare Earth Resource Utilization, Changchun Institute of Applied Chemistry; Changchun Jilin 130022 China
| | - Eduard Matito
- Euskal Herriko Unibertsitatea (UPV/EHU) Donostia International Physics Center (DIPC); Euskadi Spain
- IKERBASQUE Basque Foundation for Science; Bilbao Spain
| | - Chao Liu
- State Key Laboratory of Rare Earth Resource Utilization, Changchun Institute of Applied Chemistry; Changchun Jilin 130022 China
| | - Hua-Jin Zhai
- Shanxi University; Institute of Molecular Science; Taiyuan China
| | - Zhong-Ming Sun
- State Key Laboratory of Rare Earth Resource Utilization, Changchun Institute of Applied Chemistry; Changchun Jilin 130022 China
- State Key Laboratory of Structural Chemistry; Fujian Institute of Research on the Structure of Matter; Chinese Academy of Sciences; Fuzhou Fujian 350002 China
| | - Alexander I. Boldyrev
- Department of Chemistry and Biochemistry; Utah State University; 0300 Old Main Hill Logan UT 84322-0300 USA
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Popov IA, Pan FX, You XR, Li LJ, Matito E, Liu C, Zhai HJ, Sun ZM, Boldyrev AI. Peculiar All-Metal σ-Aromaticity of the [Au2Sb16]4−Anion in the Solid State. Angew Chem Int Ed Engl 2016. [DOI: 10.1002/ange.201609497] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Affiliation(s)
- Ivan A. Popov
- State Key Laboratory of Rare Earth Resource Utilization, Changchun Institute of Applied Chemistry; Changchun Jilin 130022 China
- Department of Chemistry and Biochemistry; Utah State University; 0300 Old Main Hill Logan UT 84322-0300 USA
| | - Fu-Xing Pan
- State Key Laboratory of Rare Earth Resource Utilization, Changchun Institute of Applied Chemistry; Changchun Jilin 130022 China
| | - Xue-Rui You
- Shanxi University; Institute of Molecular Science; Taiyuan China
| | - Lei-Jiao Li
- State Key Laboratory of Rare Earth Resource Utilization, Changchun Institute of Applied Chemistry; Changchun Jilin 130022 China
| | - Eduard Matito
- Euskal Herriko Unibertsitatea (UPV/EHU) Donostia International Physics Center (DIPC); Euskadi Spain
- IKERBASQUE Basque Foundation for Science; Bilbao Spain
| | - Chao Liu
- State Key Laboratory of Rare Earth Resource Utilization, Changchun Institute of Applied Chemistry; Changchun Jilin 130022 China
| | - Hua-Jin Zhai
- Shanxi University; Institute of Molecular Science; Taiyuan China
| | - Zhong-Ming Sun
- State Key Laboratory of Rare Earth Resource Utilization, Changchun Institute of Applied Chemistry; Changchun Jilin 130022 China
- State Key Laboratory of Structural Chemistry; Fujian Institute of Research on the Structure of Matter; Chinese Academy of Sciences; Fuzhou Fujian 350002 China
| | - Alexander I. Boldyrev
- Department of Chemistry and Biochemistry; Utah State University; 0300 Old Main Hill Logan UT 84322-0300 USA
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